Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99568.t1 | XP_003629092.1 | 67.7 | 226 | 72 | 1 | 1 | 226 | 1 | 225 | 3.50E-74 | 288.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99568.t1 | Q8S9H7 | 55.3 | 47 | 21 | 0 | 103 | 149 | 132 | 178 | 3.4e-09 | 63.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99568.t1 | G7L8N4 | 67.7 | 226 | 72 | 1 | 1 | 226 | 1 | 225 | 2.5e-74 | 288.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene99568.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99568.t1 | MTR_8g073050 | 86.283 | 226 | 30 | 1 | 1 | 226 | 1 | 225 | 1.11e-120 | 342 |
| MS.gene99568.t1 | MTR_6g043480 | 59.052 | 232 | 86 | 6 | 1 | 225 | 1 | 230 | 7.38e-70 | 213 |
| MS.gene99568.t1 | MTR_6g043490 | 58.369 | 233 | 86 | 6 | 1 | 225 | 1 | 230 | 6.26e-67 | 206 |
| MS.gene99568.t1 | MTR_8g072990 | 52.000 | 250 | 85 | 9 | 1 | 224 | 1 | 241 | 2.26e-61 | 192 |
| MS.gene99568.t1 | MTR_5g027570 | 39.726 | 73 | 44 | 0 | 94 | 166 | 83 | 155 | 2.00e-14 | 70.1 |
| MS.gene99568.t1 | MTR_1g048660 | 42.667 | 75 | 39 | 1 | 104 | 174 | 13 | 87 | 4.03e-13 | 63.5 |
| MS.gene99568.t1 | MTR_8g063870 | 36.634 | 101 | 47 | 2 | 90 | 173 | 68 | 168 | 5.09e-13 | 67.0 |
| MS.gene99568.t1 | MTR_7g067080 | 36.735 | 98 | 53 | 3 | 57 | 149 | 93 | 186 | 7.92e-13 | 66.6 |
| MS.gene99568.t1 | MTR_4g111975 | 49.057 | 53 | 27 | 0 | 100 | 152 | 135 | 187 | 2.18e-12 | 65.5 |
| MS.gene99568.t1 | MTR_3g462790 | 53.191 | 47 | 22 | 0 | 103 | 149 | 147 | 193 | 2.39e-12 | 65.5 |
| MS.gene99568.t1 | MTR_5g069710 | 35.644 | 101 | 48 | 3 | 57 | 149 | 87 | 178 | 2.69e-12 | 65.1 |
| MS.gene99568.t1 | MTR_5g081860 | 53.191 | 47 | 22 | 0 | 103 | 149 | 125 | 171 | 2.74e-12 | 64.7 |
| MS.gene99568.t1 | MTR_4g100630 | 46.667 | 60 | 32 | 0 | 90 | 149 | 82 | 141 | 3.55e-12 | 65.1 |
| MS.gene99568.t1 | MTR_2g100930 | 55.319 | 47 | 21 | 0 | 103 | 149 | 109 | 155 | 7.02e-12 | 64.3 |
| MS.gene99568.t1 | MTR_1g111830 | 39.326 | 89 | 48 | 2 | 96 | 184 | 117 | 199 | 1.48e-11 | 62.4 |
| MS.gene99568.t1 | MTR_6g092540 | 40.244 | 82 | 37 | 2 | 103 | 173 | 97 | 177 | 3.90e-11 | 61.6 |
| MS.gene99568.t1 | MTR_8g101650 | 50.980 | 51 | 25 | 0 | 103 | 153 | 105 | 155 | 5.90e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99568.t1 | AT5G05790 | 46.774 | 62 | 32 | 1 | 90 | 150 | 117 | 178 | 9.22e-13 | 66.2 |
| MS.gene99568.t1 | AT5G05790 | 46.774 | 62 | 32 | 1 | 90 | 150 | 117 | 178 | 9.22e-13 | 66.2 |
| MS.gene99568.t1 | AT5G58900 | 55.319 | 47 | 21 | 0 | 103 | 149 | 141 | 187 | 9.43e-13 | 66.2 |
| MS.gene99568.t1 | AT3G16350 | 51.724 | 58 | 27 | 1 | 93 | 149 | 126 | 183 | 1.75e-12 | 66.2 |
| MS.gene99568.t1 | AT3G11280 | 45.161 | 62 | 33 | 1 | 90 | 150 | 113 | 174 | 1.82e-12 | 65.5 |
| MS.gene99568.t1 | AT3G11280 | 45.161 | 62 | 33 | 1 | 90 | 150 | 113 | 174 | 1.82e-12 | 65.5 |
| MS.gene99568.t1 | AT2G38090 | 28.276 | 145 | 88 | 2 | 17 | 149 | 47 | 187 | 2.13e-12 | 65.5 |
| MS.gene99568.t1 | AT1G49010 | 49.057 | 53 | 27 | 0 | 100 | 152 | 131 | 183 | 2.85e-12 | 65.1 |
| MS.gene99568.t1 | AT5G08520 | 40.909 | 66 | 39 | 0 | 87 | 152 | 102 | 167 | 5.05e-12 | 64.3 |
| MS.gene99568.t1 | AT1G19000 | 50.909 | 55 | 26 | 1 | 96 | 149 | 94 | 148 | 2.06e-11 | 62.4 |
| MS.gene99568.t1 | AT1G19000 | 50.909 | 55 | 26 | 1 | 96 | 149 | 94 | 148 | 2.06e-11 | 62.4 |
| MS.gene99568.t1 | AT5G01200 | 55.319 | 47 | 21 | 0 | 103 | 149 | 146 | 192 | 2.08e-11 | 62.4 |
| MS.gene99568.t1 | AT5G04760 | 44.615 | 65 | 34 | 1 | 104 | 168 | 100 | 162 | 4.55e-11 | 60.8 |
| MS.gene99568.t1 | AT5G56840 | 41.538 | 65 | 38 | 0 | 103 | 167 | 91 | 155 | 8.32e-11 | 60.1 |
Find 75 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTAAGAACCGTTGATATT+TGG | 0.199296 | 8.3:-29489295 | None:intergenic |
| TCATCATCTGTTCCATATTA+TGG | 0.206416 | 8.3:+29490137 | MS.gene99568:CDS |
| ATACATAGTTCTTAGCAATT+TGG | 0.264680 | 8.3:-29489977 | None:intergenic |
| GGTGTTGGTGGTGATGGATT+TGG | 0.296123 | 8.3:-29489187 | None:intergenic |
| CTAGCTTCTCCTCCATAATA+TGG | 0.305605 | 8.3:-29490149 | None:intergenic |
| GCCTAGATCCATTTGAGAAT+TGG | 0.308067 | 8.3:-29489340 | None:intergenic |
| AGTTGATTTGGAACTTCGTT+TGG | 0.333131 | 8.3:+29490244 | MS.gene99568:CDS |
| GGTGTTGATGGAGGTGAGTC+AGG | 0.358089 | 8.3:-29489095 | None:intergenic |
| CCTAGATCCATTTGAGAATT+GGG | 0.364618 | 8.3:-29489339 | None:intergenic |
| CTGATGGGGCTGATCAAGTA+TGG | 0.367591 | 8.3:+29489939 | MS.gene99568:CDS |
| TGGATTTGGTGGTGAAGATT+AGG | 0.385439 | 8.3:-29489173 | None:intergenic |
| GCTTGCTCCGTTGTTGTTGT+TGG | 0.386799 | 8.3:-29490183 | None:intergenic |
| ACTCTGCTTCCAAGAGTAAC+AGG | 0.390450 | 8.3:+29490111 | MS.gene99568:CDS |
| TAGTTTGGTGTTGGTGGTGA+TGG | 0.391425 | 8.3:-29489193 | None:intergenic |
| GGATTTGGTGGTGAAGATTA+GGG | 0.406181 | 8.3:-29489172 | None:intergenic |
| TGATGAGTTCCTGTTACTCT+TGG | 0.406940 | 8.3:-29490120 | None:intergenic |
| TTTGAGAATTGGGATGTGTT+TGG | 0.407144 | 8.3:-29489329 | None:intergenic |
| GCTGTGATACATGCCAGATT+GGG | 0.411636 | 8.3:-29489273 | None:intergenic |
| TCTCAAATGGATCTAGGCTC+AGG | 0.415889 | 8.3:+29489345 | MS.gene99568:CDS |
| GATAAAGATACGGGTGTTGA+TGG | 0.416245 | 8.3:-29489107 | None:intergenic |
| GGCTGTGATACATGCCAGAT+TGG | 0.416389 | 8.3:-29489274 | None:intergenic |
| TGGTGATGGAGGAGTTGATT+TGG | 0.416843 | 8.3:+29490232 | MS.gene99568:CDS |
| GTAAGATCAATGATCTCAAT+AGG | 0.418602 | 8.3:-29489065 | None:intergenic |
| CCCAATTCTCAAATGGATCT+AGG | 0.423164 | 8.3:+29489339 | MS.gene99568:CDS |
| GTTGATTTGGAACTTCGTTT+GGG | 0.424734 | 8.3:+29490245 | MS.gene99568:CDS |
| GATCTAGGCTCAGGGTTCCT+TGG | 0.425255 | 8.3:+29489354 | MS.gene99568:CDS |
| CTACCTAGTGCTTCTGGTGA+TGG | 0.425886 | 8.3:+29490218 | MS.gene99568:CDS |
| ATGACTCTACCTAGTGCTTC+TGG | 0.429378 | 8.3:+29490212 | MS.gene99568:CDS |
| GTGGTACAAACAAGGTAGTT+TGG | 0.433356 | 8.3:-29489208 | None:intergenic |
| TAGAAACGGGAGCAAAGTTA+AGG | 0.448465 | 8.3:-29489145 | None:intergenic |
| GCTACCGGTTGGCCCCAATC+TGG | 0.452184 | 8.3:+29489260 | MS.gene99568:CDS |
| TCAAGTATGGAAAAGGGAAA+TGG | 0.454658 | 8.3:+29489952 | MS.gene99568:CDS |
| AAGATTAGGGTTGGTAGAAA+CGG | 0.455787 | 8.3:-29489159 | None:intergenic |
| CTCTTGGAAGCAGAGTTGTT+GGG | 0.457547 | 8.3:-29490104 | None:intergenic |
| GATGTGTTTGGTTCAGTTGA+CGG | 0.458493 | 8.3:-29489317 | None:intergenic |
| ATTTGAGGGGACTCAAATCC+TGG | 0.458680 | 8.3:-29489236 | None:intergenic |
| GGCCAACCGGTAGCAATTTG+AGG | 0.458848 | 8.3:-29489251 | None:intergenic |
| ACTCTTGGAAGCAGAGTTGT+TGG | 0.461350 | 8.3:-29490105 | None:intergenic |
| GGGCTGATCAAGTATGGAAA+AGG | 0.470163 | 8.3:+29489945 | MS.gene99568:CDS |
| AACACATCCCAATTCTCAAA+TGG | 0.470281 | 8.3:+29489332 | MS.gene99568:CDS |
| GTTGGTGGTGATGGATTTGG+TGG | 0.475694 | 8.3:-29489184 | None:intergenic |
| CATGCCAGATTGGGGCCAAC+CGG | 0.482065 | 8.3:-29489264 | None:intergenic |
| GACTCAAATCCTGGAGGTGG+TGG | 0.483319 | 8.3:-29489227 | None:intergenic |
| CCTAAAACCATGCACAAAAG+TGG | 0.488465 | 8.3:-29490060 | None:intergenic |
| GGAGCAAAGTTAAGGATTGT+TGG | 0.489039 | 8.3:-29489137 | None:intergenic |
| AGATTAGGGTTGGTAGAAAC+GGG | 0.494754 | 8.3:-29489158 | None:intergenic |
| CCACAACAAGTTAAAAGCTA+TGG | 0.499837 | 8.3:+29490011 | MS.gene99568:CDS |
| GAGTCCCCTCAAATTGCTAC+CGG | 0.500058 | 8.3:+29489245 | MS.gene99568:CDS |
| GCCAACCGGTAGCAATTTGA+GGG | 0.514459 | 8.3:-29489250 | None:intergenic |
| CCTAGTGCTTCTGGTGATGG+AGG | 0.523054 | 8.3:+29490221 | MS.gene99568:CDS |
| GTGTTGATGGAGGTGAGTCA+GGG | 0.531660 | 8.3:-29489094 | None:intergenic |
| AGCAACACCAACAACAACAA+CGG | 0.538127 | 8.3:+29490176 | MS.gene99568:CDS |
| TTGTTTGTACCACCACCTCC+AGG | 0.546643 | 8.3:+29489218 | MS.gene99568:CDS |
| ACAAGGTAGTTTGGTGTTGG+TGG | 0.546899 | 8.3:-29489199 | None:intergenic |
| TGGTACATTAGATAAAGATA+CGG | 0.550576 | 8.3:-29489117 | None:intergenic |
| CAAACAAGGTAGTTTGGTGT+TGG | 0.559413 | 8.3:-29489202 | None:intergenic |
| CCCCTCAAATTGCTACCGGT+TGG | 0.559490 | 8.3:+29489249 | MS.gene99568:CDS |
| AAACCATGCACAAAAGTGGC+TGG | 0.562701 | 8.3:-29490056 | None:intergenic |
| AGAAGCACTAGGTAGAGTCA+TGG | 0.563013 | 8.3:-29490210 | None:intergenic |
| AAAGATACGGGTGTTGATGG+AGG | 0.573043 | 8.3:-29489104 | None:intergenic |
| GGGGACTCAAATCCTGGAGG+TGG | 0.579811 | 8.3:-29489230 | None:intergenic |
| TTGGTGGTGAAGATTAGGGT+TGG | 0.582165 | 8.3:-29489168 | None:intergenic |
| GGCTGATCAAGTATGGAAAA+GGG | 0.582167 | 8.3:+29489946 | MS.gene99568:CDS |
| CCTCCATCACCAGAAGCACT+AGG | 0.589074 | 8.3:-29490221 | None:intergenic |
| GGTACATTAGATAAAGATAC+GGG | 0.591571 | 8.3:-29489116 | None:intergenic |
| CTCAAATGGATCTAGGCTCA+GGG | 0.596918 | 8.3:+29489346 | MS.gene99568:CDS |
| TCATGCTCTAATTGACTCCA+AGG | 0.607425 | 8.3:-29489371 | None:intergenic |
| TGGAGGTGGTGGTACAAACA+AGG | 0.619969 | 8.3:-29489216 | None:intergenic |
| TGTTGATGGAGGTGAGTCAG+GGG | 0.623721 | 8.3:-29489093 | None:intergenic |
| CATGCACAAAAGTGGCTGGT+AGG | 0.630767 | 8.3:-29490052 | None:intergenic |
| CTGTGATACATGCCAGATTG+GGG | 0.653088 | 8.3:-29489272 | None:intergenic |
| TCATCTGTTCCATATTATGG+AGG | 0.666793 | 8.3:+29490140 | MS.gene99568:CDS |
| GTATCACAGCCAAATATCAA+CGG | 0.672262 | 8.3:+29489286 | MS.gene99568:CDS |
| TGAGGGGACTCAAATCCTGG+AGG | 0.739253 | 8.3:-29489233 | None:intergenic |
| CCAACCGGTAGCAATTTGAG+GGG | 0.766266 | 8.3:-29489249 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGTTATCATTAAATT+TGG | - | chr8.3:29489497-29489516 | None:intergenic | 10.0% |
| !! | ATAAAATTAGTCATTAAATT+CGG | - | chr8.3:29489735-29489754 | None:intergenic | 10.0% |
| !! | ATATCAATAGTAAAATTTAA+CGG | - | chr8.3:29489876-29489895 | None:intergenic | 10.0% |
| !!! | ATTATTTTATAATCTATCAA+AGG | - | chr8.3:29489832-29489851 | None:intergenic | 10.0% |
| !!! | TTATTTTATAATCTATCAAA+GGG | - | chr8.3:29489831-29489850 | None:intergenic | 10.0% |
| !! | CTAAAAGTTTAATACAAAAT+TGG | - | chr8.3:29489709-29489728 | None:intergenic | 15.0% |
| !! | TATCAATAGTAAAATTTAAC+GGG | - | chr8.3:29489875-29489894 | None:intergenic | 15.0% |
| !!! | TATTTTAGCTTATTTCTGAT+GGG | + | chr8.3:29489924-29489943 | MS.gene99568:intron | 20.0% |
| !!! | TTATTTTAGCTTATTTCTGA+TGG | + | chr8.3:29489923-29489942 | MS.gene99568:intron | 20.0% |
| ! | AAATTGCGATAAAAATTGAG+AGG | + | chr8.3:29489469-29489488 | MS.gene99568:intron | 25.0% |
| ! | ATAATCTATCAAAGGGTAAT+TGG | - | chr8.3:29489824-29489843 | None:intergenic | 25.0% |
| ! | ATACATAGTTCTTAGCAATT+TGG | - | chr8.3:29489980-29489999 | None:intergenic | 25.0% |
| ! | GTTGAATAACCACAAAAATT+TGG | + | chr8.3:29489658-29489677 | MS.gene99568:intron | 25.0% |
| ! | TGGTACATTAGATAAAGATA+CGG | - | chr8.3:29489120-29489139 | None:intergenic | 25.0% |
| !! | TTTCTTTCTCCAAATTTTTG+TGG | - | chr8.3:29489670-29489689 | None:intergenic | 25.0% |
| !!! | ATTTTAGCTTATTTCTGATG+GGG | + | chr8.3:29489925-29489944 | MS.gene99568:intron | 25.0% |
| AAATAACTGCGAATTTAGTG+GGG | - | chr8.3:29489588-29489607 | None:intergenic | 30.0% | |
| GAAATAACTGCGAATTTAGT+GGG | - | chr8.3:29489589-29489608 | None:intergenic | 30.0% | |
| GGTACATTAGATAAAGATAC+GGG | - | chr8.3:29489119-29489138 | None:intergenic | 30.0% | |
| GTAAGATCAATGATCTCAAT+AGG | - | chr8.3:29489068-29489087 | None:intergenic | 30.0% | |
| GTTTAAGAACCGTTGATATT+TGG | - | chr8.3:29489298-29489317 | None:intergenic | 30.0% | |
| TCATCATCTGTTCCATATTA+TGG | + | chr8.3:29490137-29490156 | MS.gene99568:CDS | 30.0% | |
| TGAAATAACTGCGAATTTAG+TGG | - | chr8.3:29489590-29489609 | None:intergenic | 30.0% | |
| ! | ATTGGTGTAGAAGTGATTTT+AGG | - | chr8.3:29489806-29489825 | None:intergenic | 30.0% |
| AACACATCCCAATTCTCAAA+TGG | + | chr8.3:29489332-29489351 | MS.gene99568:CDS | 35.0% | |
| CCACAACAAGTTAAAAGCTA+TGG | + | chr8.3:29490011-29490030 | MS.gene99568:CDS | 35.0% | |
| CCTAGATCCATTTGAGAATT+GGG | - | chr8.3:29489342-29489361 | None:intergenic | 35.0% | |
| GTATCACAGCCAAATATCAA+CGG | + | chr8.3:29489286-29489305 | MS.gene99568:CDS | 35.0% | |
| TCAAGTATGGAAAAGGGAAA+TGG | + | chr8.3:29489952-29489971 | MS.gene99568:CDS | 35.0% | |
| TCATCTGTTCCATATTATGG+AGG | + | chr8.3:29490140-29490159 | MS.gene99568:CDS | 35.0% | |
| TTTGAGAATTGGGATGTGTT+TGG | - | chr8.3:29489332-29489351 | None:intergenic | 35.0% | |
| !! | AAGATTAGGGTTGGTAGAAA+CGG | - | chr8.3:29489162-29489181 | None:intergenic | 35.0% |
| !! | AGTTGATTTGGAACTTCGTT+TGG | + | chr8.3:29490244-29490263 | MS.gene99568:CDS | 35.0% |
| !! | GTTGATTTGGAACTTCGTTT+GGG | + | chr8.3:29490245-29490264 | MS.gene99568:CDS | 35.0% |
| !!! | CCATAGCTTTTAACTTGTTG+TGG | - | chr8.3:29490014-29490033 | None:intergenic | 35.0% |
| AGCAACACCAACAACAACAA+CGG | + | chr8.3:29490176-29490195 | MS.gene99568:CDS | 40.0% | |
| CCCAATTCTCAAATGGATCT+AGG | + | chr8.3:29489339-29489358 | MS.gene99568:CDS | 40.0% | |
| CCTAAAACCATGCACAAAAG+TGG | - | chr8.3:29490063-29490082 | None:intergenic | 40.0% | |
| CTAGCTTCTCCTCCATAATA+TGG | - | chr8.3:29490152-29490171 | None:intergenic | 40.0% | |
| GCCTAGATCCATTTGAGAAT+TGG | - | chr8.3:29489343-29489362 | None:intergenic | 40.0% | |
| GGAGCAAAGTTAAGGATTGT+TGG | - | chr8.3:29489140-29489159 | None:intergenic | 40.0% | |
| GGCTGATCAAGTATGGAAAA+GGG | + | chr8.3:29489946-29489965 | MS.gene99568:CDS | 40.0% | |
| GTGGTACAAACAAGGTAGTT+TGG | - | chr8.3:29489211-29489230 | None:intergenic | 40.0% | |
| TAGAAACGGGAGCAAAGTTA+AGG | - | chr8.3:29489148-29489167 | None:intergenic | 40.0% | |
| TGATGAGTTCCTGTTACTCT+TGG | - | chr8.3:29490123-29490142 | None:intergenic | 40.0% | |
| ! | GATGTGTTTGGTTCAGTTGA+CGG | - | chr8.3:29489320-29489339 | None:intergenic | 40.0% |
| ! | TCATGCTCTAATTGACTCCA+AGG | - | chr8.3:29489374-29489393 | None:intergenic | 40.0% |
| !! | AGATTAGGGTTGGTAGAAAC+GGG | - | chr8.3:29489161-29489180 | None:intergenic | 40.0% |
| !! | CAAACAAGGTAGTTTGGTGT+TGG | - | chr8.3:29489205-29489224 | None:intergenic | 40.0% |
| !! | CCACTTTTGTGCATGGTTTT+AGG | + | chr8.3:29490060-29490079 | MS.gene99568:CDS | 40.0% |
| !! | GATAAAGATACGGGTGTTGA+TGG | - | chr8.3:29489110-29489129 | None:intergenic | 40.0% |
| !! | GGATTTGGTGGTGAAGATTA+GGG | - | chr8.3:29489175-29489194 | None:intergenic | 40.0% |
| !! | TGGATTTGGTGGTGAAGATT+AGG | - | chr8.3:29489176-29489195 | None:intergenic | 40.0% |
| AAACCATGCACAAAAGTGGC+TGG | - | chr8.3:29490059-29490078 | None:intergenic | 45.0% | |
| ACTCTGCTTCCAAGAGTAAC+AGG | + | chr8.3:29490111-29490130 | MS.gene99568:CDS | 45.0% | |
| ACTCTTGGAAGCAGAGTTGT+TGG | - | chr8.3:29490108-29490127 | None:intergenic | 45.0% | |
| ATGACTCTACCTAGTGCTTC+TGG | + | chr8.3:29490212-29490231 | MS.gene99568:CDS | 45.0% | |
| ATTTGAGGGGACTCAAATCC+TGG | - | chr8.3:29489239-29489258 | None:intergenic | 45.0% | |
| CTCAAATGGATCTAGGCTCA+GGG | + | chr8.3:29489346-29489365 | MS.gene99568:CDS | 45.0% | |
| CTCTTGGAAGCAGAGTTGTT+GGG | - | chr8.3:29490107-29490126 | None:intergenic | 45.0% | |
| CTGTGATACATGCCAGATTG+GGG | - | chr8.3:29489275-29489294 | None:intergenic | 45.0% | |
| GCTGTGATACATGCCAGATT+GGG | - | chr8.3:29489276-29489295 | None:intergenic | 45.0% | |
| GGGCTGATCAAGTATGGAAA+AGG | + | chr8.3:29489945-29489964 | MS.gene99568:CDS | 45.0% | |
| TCTCAAATGGATCTAGGCTC+AGG | + | chr8.3:29489345-29489364 | MS.gene99568:CDS | 45.0% | |
| !! | AAAGATACGGGTGTTGATGG+AGG | - | chr8.3:29489107-29489126 | None:intergenic | 45.0% |
| !! | ACAAGGTAGTTTGGTGTTGG+TGG | - | chr8.3:29489202-29489221 | None:intergenic | 45.0% |
| !! | AGAAGCACTAGGTAGAGTCA+TGG | - | chr8.3:29490213-29490232 | None:intergenic | 45.0% |
| !! | TAGTTTGGTGTTGGTGGTGA+TGG | - | chr8.3:29489196-29489215 | None:intergenic | 45.0% |
| !! | TGGTGATGGAGGAGTTGATT+TGG | + | chr8.3:29490232-29490251 | MS.gene99568:CDS | 45.0% |
| !! | TTGGTGGTGAAGATTAGGGT+TGG | - | chr8.3:29489171-29489190 | None:intergenic | 45.0% |
| CATGCACAAAAGTGGCTGGT+AGG | - | chr8.3:29490055-29490074 | None:intergenic | 50.0% | |
| CCAACCGGTAGCAATTTGAG+GGG | - | chr8.3:29489252-29489271 | None:intergenic | 50.0% | |
| CTACCTAGTGCTTCTGGTGA+TGG | + | chr8.3:29490218-29490237 | MS.gene99568:CDS | 50.0% | |
| CTGATGGGGCTGATCAAGTA+TGG | + | chr8.3:29489939-29489958 | MS.gene99568:CDS | 50.0% | |
| GAGTCCCCTCAAATTGCTAC+CGG | + | chr8.3:29489245-29489264 | MS.gene99568:CDS | 50.0% | |
| GCCAACCGGTAGCAATTTGA+GGG | - | chr8.3:29489253-29489272 | None:intergenic | 50.0% | |
| GGCTGTGATACATGCCAGAT+TGG | - | chr8.3:29489277-29489296 | None:intergenic | 50.0% | |
| TTGTTTGTACCACCACCTCC+AGG | + | chr8.3:29489218-29489237 | MS.gene99568:CDS | 50.0% | |
| ! | GCTTGCTCCGTTGTTGTTGT+TGG | - | chr8.3:29490186-29490205 | None:intergenic | 50.0% |
| ! | GTGTTGATGGAGGTGAGTCA+GGG | - | chr8.3:29489097-29489116 | None:intergenic | 50.0% |
| ! | TGGAGGTGGTGGTACAAACA+AGG | - | chr8.3:29489219-29489238 | None:intergenic | 50.0% |
| ! | TGTTGATGGAGGTGAGTCAG+GGG | - | chr8.3:29489096-29489115 | None:intergenic | 50.0% |
| !! | GGTGTTGGTGGTGATGGATT+TGG | - | chr8.3:29489190-29489209 | None:intergenic | 50.0% |
| !! | GTTGGTGGTGATGGATTTGG+TGG | - | chr8.3:29489187-29489206 | None:intergenic | 50.0% |
| !!! | CTACCAGCCACTTTTGTGCA+TGG | + | chr8.3:29490053-29490072 | MS.gene99568:CDS | 50.0% |
| CCCCTCAAATTGCTACCGGT+TGG | + | chr8.3:29489249-29489268 | MS.gene99568:CDS | 55.0% | |
| GACTCAAATCCTGGAGGTGG+TGG | - | chr8.3:29489230-29489249 | None:intergenic | 55.0% | |
| GATCTAGGCTCAGGGTTCCT+TGG | + | chr8.3:29489354-29489373 | MS.gene99568:CDS | 55.0% | |
| GGCCAACCGGTAGCAATTTG+AGG | - | chr8.3:29489254-29489273 | None:intergenic | 55.0% | |
| TGAGGGGACTCAAATCCTGG+AGG | - | chr8.3:29489236-29489255 | None:intergenic | 55.0% | |
| !! | CCTAGTGCTTCTGGTGATGG+AGG | + | chr8.3:29490221-29490240 | MS.gene99568:CDS | 55.0% |
| !! | CCTCCATCACCAGAAGCACT+AGG | - | chr8.3:29490224-29490243 | None:intergenic | 55.0% |
| !! | GGTGTTGATGGAGGTGAGTC+AGG | - | chr8.3:29489098-29489117 | None:intergenic | 55.0% |
| CATGCCAGATTGGGGCCAAC+CGG | - | chr8.3:29489267-29489286 | None:intergenic | 60.0% | |
| GGGGACTCAAATCCTGGAGG+TGG | - | chr8.3:29489233-29489252 | None:intergenic | 60.0% | |
| ! | GCTACCGGTTGGCCCCAATC+TGG | + | chr8.3:29489260-29489279 | MS.gene99568:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 29489062 | 29490280 | 29489062 | ID=MS.gene99568 |
| chr8.3 | mRNA | 29489062 | 29490280 | 29489062 | ID=MS.gene99568.t1;Parent=MS.gene99568 |
| chr8.3 | exon | 29489062 | 29489393 | 29489062 | ID=MS.gene99568.t1.exon1;Parent=MS.gene99568.t1 |
| chr8.3 | CDS | 29489062 | 29489393 | 29489062 | ID=cds.MS.gene99568.t1;Parent=MS.gene99568.t1 |
| chr8.3 | exon | 29489932 | 29490280 | 29489932 | ID=MS.gene99568.t1.exon2;Parent=MS.gene99568.t1 |
| chr8.3 | CDS | 29489932 | 29490280 | 29489932 | ID=cds.MS.gene99568.t1;Parent=MS.gene99568.t1 |
| Gene Sequence |
| Protein sequence |
