Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99570.t1 | XP_003629092.1 | 84.7 | 170 | 26 | 0 | 1 | 170 | 1 | 170 | 1.90E-75 | 292.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99570.t1 | Q8S9H7 | 52.1 | 48 | 23 | 0 | 103 | 150 | 132 | 179 | 9.8e-09 | 62.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99570.t1 | G7L8N4 | 84.7 | 170 | 26 | 0 | 1 | 170 | 1 | 170 | 1.3e-75 | 292.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene99570.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99570.t1 | MTR_8g073050 | 91.071 | 224 | 19 | 1 | 1 | 224 | 1 | 223 | 6.64e-129 | 363 |
| MS.gene99570.t1 | MTR_6g043480 | 59.483 | 232 | 83 | 6 | 1 | 224 | 1 | 229 | 1.13e-72 | 221 |
| MS.gene99570.t1 | MTR_6g043490 | 60.515 | 233 | 79 | 6 | 1 | 224 | 1 | 229 | 7.53e-71 | 216 |
| MS.gene99570.t1 | MTR_8g072990 | 54.183 | 251 | 80 | 8 | 1 | 225 | 1 | 242 | 1.28e-65 | 203 |
| MS.gene99570.t1 | MTR_5g027570 | 40.580 | 69 | 41 | 0 | 98 | 166 | 87 | 155 | 6.13e-14 | 68.9 |
| MS.gene99570.t1 | MTR_8g063870 | 31.387 | 137 | 77 | 3 | 87 | 212 | 65 | 195 | 1.89e-12 | 65.5 |
| MS.gene99570.t1 | MTR_6g092540 | 32.787 | 122 | 64 | 2 | 103 | 224 | 97 | 200 | 2.99e-12 | 64.7 |
| MS.gene99570.t1 | MTR_1g048660 | 41.333 | 75 | 40 | 1 | 104 | 174 | 13 | 87 | 4.54e-12 | 60.5 |
| MS.gene99570.t1 | MTR_4g111975 | 47.170 | 53 | 28 | 0 | 100 | 152 | 135 | 187 | 6.66e-12 | 63.9 |
| MS.gene99570.t1 | MTR_8g101650 | 49.020 | 51 | 26 | 0 | 103 | 153 | 105 | 155 | 1.42e-11 | 62.8 |
| MS.gene99570.t1 | MTR_5g069710 | 33.333 | 102 | 51 | 2 | 57 | 150 | 87 | 179 | 1.69e-11 | 62.8 |
| MS.gene99570.t1 | MTR_3g462790 | 50.000 | 48 | 24 | 0 | 103 | 150 | 147 | 194 | 1.77e-11 | 62.8 |
| MS.gene99570.t1 | MTR_5g081860 | 50.000 | 48 | 24 | 0 | 103 | 150 | 125 | 172 | 1.83e-11 | 62.4 |
| MS.gene99570.t1 | MTR_4g100630 | 44.262 | 61 | 34 | 0 | 90 | 150 | 82 | 142 | 2.00e-11 | 62.8 |
| MS.gene99570.t1 | MTR_2g100930 | 52.083 | 48 | 23 | 0 | 103 | 150 | 109 | 156 | 2.59e-11 | 62.4 |
| MS.gene99570.t1 | MTR_7g067080 | 33.333 | 99 | 57 | 3 | 57 | 150 | 93 | 187 | 3.93e-11 | 62.0 |
| MS.gene99570.t1 | MTR_5g037080 | 47.917 | 48 | 25 | 0 | 103 | 150 | 102 | 149 | 5.58e-11 | 61.2 |
| MS.gene99570.t1 | MTR_4g107230 | 45.000 | 60 | 26 | 1 | 97 | 149 | 71 | 130 | 6.31e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99570.t1 | AT3G16350 | 49.153 | 59 | 29 | 1 | 93 | 150 | 126 | 184 | 3.01e-12 | 65.5 |
| MS.gene99570.t1 | AT5G05790 | 47.273 | 55 | 29 | 0 | 95 | 149 | 123 | 177 | 3.86e-12 | 64.7 |
| MS.gene99570.t1 | AT5G05790 | 47.273 | 55 | 29 | 0 | 95 | 149 | 123 | 177 | 3.86e-12 | 64.7 |
| MS.gene99570.t1 | AT5G58900 | 52.083 | 48 | 23 | 0 | 103 | 150 | 141 | 188 | 5.11e-12 | 64.3 |
| MS.gene99570.t1 | AT1G49010 | 47.170 | 53 | 28 | 0 | 100 | 152 | 131 | 183 | 6.42e-12 | 64.3 |
| MS.gene99570.t1 | AT2G38090 | 52.083 | 48 | 23 | 0 | 103 | 150 | 141 | 188 | 9.13e-12 | 63.5 |
| MS.gene99570.t1 | AT5G08520 | 45.283 | 53 | 29 | 0 | 100 | 152 | 115 | 167 | 1.89e-11 | 62.8 |
| MS.gene99570.t1 | AT1G19000 | 49.091 | 55 | 27 | 1 | 96 | 149 | 94 | 148 | 2.48e-11 | 62.4 |
| MS.gene99570.t1 | AT1G19000 | 49.091 | 55 | 27 | 1 | 96 | 149 | 94 | 148 | 2.48e-11 | 62.4 |
| MS.gene99570.t1 | AT5G61620 | 36.538 | 104 | 47 | 2 | 104 | 207 | 109 | 193 | 2.65e-11 | 62.4 |
| MS.gene99570.t1 | AT3G11280 | 51.064 | 47 | 23 | 0 | 103 | 149 | 127 | 173 | 3.19e-11 | 61.6 |
| MS.gene99570.t1 | AT3G11280 | 51.064 | 47 | 23 | 0 | 103 | 149 | 127 | 173 | 3.19e-11 | 61.6 |
| MS.gene99570.t1 | AT5G01200 | 52.083 | 48 | 23 | 0 | 103 | 150 | 146 | 193 | 3.57e-11 | 61.6 |
Find 73 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCATCTGCTCCATATTA+TGG | 0.239375 | 8.3:+29514457 | MS.gene99570:CDS |
| GTTTAAGAACCGTTGCAATT+TGG | 0.286710 | 8.3:-29513609 | None:intergenic |
| GGTGTTGGTGGTGATGGATT+TGG | 0.296123 | 8.3:-29513501 | None:intergenic |
| CTGCTAGCTTCTCCATAATA+TGG | 0.297489 | 8.3:-29514469 | None:intergenic |
| TTTGAGAATTGGGATGTCTT+TGG | 0.303715 | 8.3:-29513643 | None:intergenic |
| AATTGGGATGTCTTTGGTTC+AGG | 0.316369 | 8.3:-29513637 | None:intergenic |
| GCCTAGCTCCATTTGAGAAT+TGG | 0.318293 | 8.3:-29513654 | None:intergenic |
| AGTTGATTTGGAGCTTCGTT+TGG | 0.335545 | 8.3:+29514564 | MS.gene99570:CDS |
| CTGATGGGGCTGATTGAGTA+TGG | 0.344517 | 8.3:+29514259 | MS.gene99570:CDS |
| TAGAAACGGGAACAAAATTA+AGG | 0.365725 | 8.3:-29513459 | None:intergenic |
| CCTAGCTCCATTTGAGAATT+GGG | 0.375616 | 8.3:-29513653 | None:intergenic |
| GGTGTTGATGGAGGTGAGTC+AGG | 0.379440 | 8.3:-29513409 | None:intergenic |
| TGGATTTGGTGGTGAAGATT+AGG | 0.385439 | 8.3:-29513487 | None:intergenic |
| TGATGAGTTCCTGTTTCTCT+TGG | 0.391375 | 8.3:-29514440 | None:intergenic |
| TAGTTTGGTGTTGGTGGTGA+TGG | 0.391425 | 8.3:-29513507 | None:intergenic |
| CTCTTGGAAGCAGAGTTGTT+GGG | 0.392834 | 8.3:-29514424 | None:intergenic |
| GGCCAACCGGTAGCGATTTG+AGG | 0.396177 | 8.3:-29513565 | None:intergenic |
| TCTCAAATGGAGCTAGGCTC+AGG | 0.396903 | 8.3:+29513659 | MS.gene99570:CDS |
| GGATTTGGTGGTGAAGATTA+GGG | 0.406181 | 8.3:-29513486 | None:intergenic |
| GATAAAGATACAGGTGTTGA+TGG | 0.413209 | 8.3:-29513421 | None:intergenic |
| GCTGTGATACATGCCAGGTT+GGG | 0.416104 | 8.3:-29513587 | None:intergenic |
| TCTCTTGGAAGCAGAGTTGT+TGG | 0.416850 | 8.3:-29514425 | None:intergenic |
| GTAAGATCAATGATCTCAAT+AGG | 0.418602 | 8.3:-29513379 | None:intergenic |
| ACTCTGCTTCCAAGAGAAAC+AGG | 0.420387 | 8.3:+29514431 | MS.gene99570:CDS |
| GCCAACCGGTAGCGATTTGA+GGG | 0.420964 | 8.3:-29513564 | None:intergenic |
| GTTGATTTGGAGCTTCGTTT+GGG | 0.430693 | 8.3:+29514565 | MS.gene99570:CDS |
| GTGGTACAAACAAGGTAGTT+TGG | 0.433356 | 8.3:-29513522 | None:intergenic |
| GAGCTAGGCTCAGGGTTCCT+TGG | 0.446694 | 8.3:+29513668 | MS.gene99570:CDS |
| AAGATTAGGGTTGGTAGAAA+CGG | 0.455787 | 8.3:-29513473 | None:intergenic |
| GTCTCAAATCCTGGAGGTGG+TGG | 0.457263 | 8.3:-29513541 | None:intergenic |
| GGGCTGATTGAGTATGGAAA+AGG | 0.458465 | 8.3:+29514265 | MS.gene99570:CDS |
| GATGTCTTTGGTTCAGGTAA+CGG | 0.466372 | 8.3:-29513631 | None:intergenic |
| GTTGGTGGTGATGGATTTGG+TGG | 0.475694 | 8.3:-29513498 | None:intergenic |
| GGCTGTGATACATGCCAGGT+TGG | 0.479487 | 8.3:-29513588 | None:intergenic |
| CATGCCAGGTTGGGGCCAAC+CGG | 0.482475 | 8.3:-29513578 | None:intergenic |
| ATTTGAGGGGTCTCAAATCC+TGG | 0.485120 | 8.3:-29513550 | None:intergenic |
| TTGAGTATGGAAAAGGGAAA+TGG | 0.487269 | 8.3:+29514272 | MS.gene99570:CDS |
| AGTGCTTGCTTCATAGTTGT+TGG | 0.490843 | 8.3:-29514503 | None:intergenic |
| CCTAGTGCTTCTGCTGGTGA+TGG | 0.499343 | 8.3:+29514538 | MS.gene99570:CDS |
| CCACAACAAGTTAAAAGCTA+TGG | 0.499837 | 8.3:+29514331 | MS.gene99570:CDS |
| AGATTAGGGTTGGTAGAAAC+GGG | 0.501786 | 8.3:-29513472 | None:intergenic |
| TGGTGATGGAGAAGTTGATT+TGG | 0.503382 | 8.3:+29514552 | MS.gene99570:CDS |
| AAGACATCCCAATTCTCAAA+TGG | 0.506263 | 8.3:+29513646 | MS.gene99570:CDS |
| GGTACATTAGATAAAGATAC+AGG | 0.519695 | 8.3:-29513430 | None:intergenic |
| GGGGTCTCAAATCCTGGAGG+TGG | 0.526295 | 8.3:-29513544 | None:intergenic |
| CTGTGATACATGCCAGGTTG+GGG | 0.528256 | 8.3:-29513586 | None:intergenic |
| AGAAGCACTAGGCGGAGTCA+TGG | 0.531695 | 8.3:-29514527 | None:intergenic |
| GAGACCCCTCAAATCGCTAC+CGG | 0.540565 | 8.3:+29513559 | MS.gene99570:CDS |
| TTGTTTGTACCACCACCTCC+AGG | 0.546643 | 8.3:+29513532 | MS.gene99570:CDS |
| ACAAGGTAGTTTGGTGTTGG+TGG | 0.546899 | 8.3:-29513513 | None:intergenic |
| GGCTGATTGAGTATGGAAAA+GGG | 0.548425 | 8.3:+29514266 | MS.gene99570:CDS |
| GGAACAAAATTAAGGATCGT+TGG | 0.550984 | 8.3:-29513451 | None:intergenic |
| GCTACCGGTTGGCCCCAACC+TGG | 0.556164 | 8.3:+29513574 | MS.gene99570:CDS |
| ACTCCGCCTAGTGCTTCTGC+TGG | 0.556890 | 8.3:+29514532 | MS.gene99570:CDS |
| CCATCACCAGCAGAAGCACT+AGG | 0.558115 | 8.3:-29514538 | None:intergenic |
| AAACCATGCACAAATGTGGC+TGG | 0.559050 | 8.3:-29514376 | None:intergenic |
| CAAACAAGGTAGTTTGGTGT+TGG | 0.559413 | 8.3:-29513516 | None:intergenic |
| CCTAAAACCATGCACAAATG+TGG | 0.569308 | 8.3:-29514380 | None:intergenic |
| CCCAATTCTCAAATGGAGCT+AGG | 0.570237 | 8.3:+29513653 | MS.gene99570:CDS |
| ATTTGGCTGTGATACATGCC+AGG | 0.575999 | 8.3:-29513592 | None:intergenic |
| CTACCAGCCACATTTGTGCA+TGG | 0.576832 | 8.3:+29514373 | MS.gene99570:CDS |
| TTGGTGGTGAAGATTAGGGT+TGG | 0.582165 | 8.3:-29513482 | None:intergenic |
| CTCAAATGGAGCTAGGCTCA+GGG | 0.594472 | 8.3:+29513660 | MS.gene99570:CDS |
| CCCCTCAAATCGCTACCGGT+TGG | 0.595096 | 8.3:+29513563 | MS.gene99570:CDS |
| TCATGCTCTAATTGACTCCA+AGG | 0.607425 | 8.3:-29513685 | None:intergenic |
| AAAGATACAGGTGTTGATGG+AGG | 0.610611 | 8.3:-29513418 | None:intergenic |
| GTGTTGATGGAGGTGAGTCA+GGG | 0.619630 | 8.3:-29513408 | None:intergenic |
| TGGAGGTGGTGGTACAAACA+AGG | 0.619969 | 8.3:-29513530 | None:intergenic |
| CATGCACAAATGTGGCTGGT+AGG | 0.633937 | 8.3:-29514372 | None:intergenic |
| GTATCACAGCCAAATTGCAA+CGG | 0.672262 | 8.3:+29513600 | MS.gene99570:CDS |
| CCAACCGGTAGCGATTTGAG+GGG | 0.703939 | 8.3:-29513563 | None:intergenic |
| TGAGGGGTCTCAAATCCTGG+AGG | 0.731817 | 8.3:-29513547 | None:intergenic |
| TCACCAGCAGAAGCACTAGG+CGG | 0.753286 | 8.3:-29514535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTAGTCATTAAATT+CGG | - | chr8.3:29514056-29514075 | None:intergenic | 10.0% |
| !! | AAATCAAGAGTAAAATTTAA+CGG | - | chr8.3:29514202-29514221 | None:intergenic | 15.0% |
| !! | AAATTGCGATAAAAATTTAG+AGG | + | chr8.3:29513783-29513802 | MS.gene99570:intron | 20.0% |
| !! | AATCAAGAGTAAAATTTAAC+GGG | - | chr8.3:29514201-29514220 | None:intergenic | 20.0% |
| !! | ATAATCTATGAAAGAGTAAT+TGG | - | chr8.3:29514145-29514164 | None:intergenic | 20.0% |
| !! | CAAAAATTAATCACTGAAAA+TGG | - | chr8.3:29513811-29513830 | None:intergenic | 20.0% |
| !! | TGTCAAAAAAATAATAACTG+CGG | - | chr8.3:29513857-29513876 | None:intergenic | 20.0% |
| !!! | TATTTTAGCTTATTTCTGAT+GGG | + | chr8.3:29514244-29514263 | MS.gene99570:intron | 20.0% |
| !!! | TTATTTTAGCTTATTTCTGA+TGG | + | chr8.3:29514243-29514262 | MS.gene99570:intron | 20.0% |
| ! | TTGAAATAGCCACAAAAATT+TGG | + | chr8.3:29513975-29513994 | MS.gene99570:intron | 25.0% |
| !! | TTTCTTTCTCCAAATTTTTG+TGG | - | chr8.3:29513987-29514006 | None:intergenic | 25.0% |
| !!! | ATTTTAGCTTATTTCTGATG+GGG | + | chr8.3:29514245-29514264 | MS.gene99570:intron | 25.0% |
| AAATAACTGTGGATTTAGTG+AGG | - | chr8.3:29513904-29513923 | None:intergenic | 30.0% | |
| AATGATCTCACTTTACTACT+GGG | + | chr8.3:29513751-29513770 | MS.gene99570:intron | 30.0% | |
| AGAGAAAGTTGAAATAACTG+TGG | - | chr8.3:29513915-29513934 | None:intergenic | 30.0% | |
| GGTACATTAGATAAAGATAC+AGG | - | chr8.3:29513433-29513452 | None:intergenic | 30.0% | |
| GTAAGATCAATGATCTCAAT+AGG | - | chr8.3:29513382-29513401 | None:intergenic | 30.0% | |
| TAATGATCTCACTTTACTAC+TGG | + | chr8.3:29513750-29513769 | MS.gene99570:intron | 30.0% | |
| TAGAAACGGGAACAAAATTA+AGG | - | chr8.3:29513462-29513481 | None:intergenic | 30.0% | |
| AAGACATCCCAATTCTCAAA+TGG | + | chr8.3:29513646-29513665 | MS.gene99570:CDS | 35.0% | |
| CAAGAGTAAAATTTAACGGG+AGG | - | chr8.3:29514198-29514217 | None:intergenic | 35.0% | |
| CCACAACAAGTTAAAAGCTA+TGG | + | chr8.3:29514331-29514350 | MS.gene99570:CDS | 35.0% | |
| GGAACAAAATTAAGGATCGT+TGG | - | chr8.3:29513454-29513473 | None:intergenic | 35.0% | |
| GTTTAAGAACCGTTGCAATT+TGG | - | chr8.3:29513612-29513631 | None:intergenic | 35.0% | |
| TCATCATCTGCTCCATATTA+TGG | + | chr8.3:29514457-29514476 | MS.gene99570:CDS | 35.0% | |
| TTGAGTATGGAAAAGGGAAA+TGG | + | chr8.3:29514272-29514291 | MS.gene99570:CDS | 35.0% | |
| TTTGAGAATTGGGATGTCTT+TGG | - | chr8.3:29513646-29513665 | None:intergenic | 35.0% | |
| !! | AAGATTAGGGTTGGTAGAAA+CGG | - | chr8.3:29513476-29513495 | None:intergenic | 35.0% |
| !! | GATAAAGATACAGGTGTTGA+TGG | - | chr8.3:29513424-29513443 | None:intergenic | 35.0% |
| !!! | CCATAGCTTTTAACTTGTTG+TGG | - | chr8.3:29514334-29514353 | None:intergenic | 35.0% |
| !!! | TTGTGCATGGTTTTAGGAAA+AGG | + | chr8.3:29514386-29514405 | MS.gene99570:CDS | 35.0% |
| AGTGCTTGCTTCATAGTTGT+TGG | - | chr8.3:29514506-29514525 | None:intergenic | 40.0% | |
| CCTAAAACCATGCACAAATG+TGG | - | chr8.3:29514383-29514402 | None:intergenic | 40.0% | |
| CCTAGCTCCATTTGAGAATT+GGG | - | chr8.3:29513656-29513675 | None:intergenic | 40.0% | |
| GGCTGATTGAGTATGGAAAA+GGG | + | chr8.3:29514266-29514285 | MS.gene99570:CDS | 40.0% | |
| GTATCACAGCCAAATTGCAA+CGG | + | chr8.3:29513600-29513619 | MS.gene99570:CDS | 40.0% | |
| GTGGTACAAACAAGGTAGTT+TGG | - | chr8.3:29513525-29513544 | None:intergenic | 40.0% | |
| ! | AATTGGGATGTCTTTGGTTC+AGG | - | chr8.3:29513640-29513659 | None:intergenic | 40.0% |
| ! | CCACATTTGTGCATGGTTTT+AGG | + | chr8.3:29514380-29514399 | MS.gene99570:CDS | 40.0% |
| ! | CTGCTAGCTTCTCCATAATA+TGG | - | chr8.3:29514472-29514491 | None:intergenic | 40.0% |
| ! | GATGTCTTTGGTTCAGGTAA+CGG | - | chr8.3:29513634-29513653 | None:intergenic | 40.0% |
| ! | TCATGCTCTAATTGACTCCA+AGG | - | chr8.3:29513688-29513707 | None:intergenic | 40.0% |
| ! | TGATGAGTTCCTGTTTCTCT+TGG | - | chr8.3:29514443-29514462 | None:intergenic | 40.0% |
| !! | AAAGATACAGGTGTTGATGG+AGG | - | chr8.3:29513421-29513440 | None:intergenic | 40.0% |
| !! | AGATTAGGGTTGGTAGAAAC+GGG | - | chr8.3:29513475-29513494 | None:intergenic | 40.0% |
| !! | AGTTGATTTGGAGCTTCGTT+TGG | + | chr8.3:29514564-29514583 | MS.gene99570:CDS | 40.0% |
| !! | CAAACAAGGTAGTTTGGTGT+TGG | - | chr8.3:29513519-29513538 | None:intergenic | 40.0% |
| !! | GGATTTGGTGGTGAAGATTA+GGG | - | chr8.3:29513489-29513508 | None:intergenic | 40.0% |
| !! | GTTGATTTGGAGCTTCGTTT+GGG | + | chr8.3:29514565-29514584 | MS.gene99570:CDS | 40.0% |
| !! | TGGATTTGGTGGTGAAGATT+AGG | - | chr8.3:29513490-29513509 | None:intergenic | 40.0% |
| !! | TGGTGATGGAGAAGTTGATT+TGG | + | chr8.3:29514552-29514571 | MS.gene99570:CDS | 40.0% |
| AAACCATGCACAAATGTGGC+TGG | - | chr8.3:29514379-29514398 | None:intergenic | 45.0% | |
| ACTCTGCTTCCAAGAGAAAC+AGG | + | chr8.3:29514431-29514450 | MS.gene99570:CDS | 45.0% | |
| ATTTGAGGGGTCTCAAATCC+TGG | - | chr8.3:29513553-29513572 | None:intergenic | 45.0% | |
| ATTTGGCTGTGATACATGCC+AGG | - | chr8.3:29513595-29513614 | None:intergenic | 45.0% | |
| CCCAATTCTCAAATGGAGCT+AGG | + | chr8.3:29513653-29513672 | MS.gene99570:CDS | 45.0% | |
| CTCTTGGAAGCAGAGTTGTT+GGG | - | chr8.3:29514427-29514446 | None:intergenic | 45.0% | |
| GCCTAGCTCCATTTGAGAAT+TGG | - | chr8.3:29513657-29513676 | None:intergenic | 45.0% | |
| GGGCTGATTGAGTATGGAAA+AGG | + | chr8.3:29514265-29514284 | MS.gene99570:CDS | 45.0% | |
| TCTCTTGGAAGCAGAGTTGT+TGG | - | chr8.3:29514428-29514447 | None:intergenic | 45.0% | |
| !! | ACAAGGTAGTTTGGTGTTGG+TGG | - | chr8.3:29513516-29513535 | None:intergenic | 45.0% |
| !! | TAGTTTGGTGTTGGTGGTGA+TGG | - | chr8.3:29513510-29513529 | None:intergenic | 45.0% |
| !! | TTGGTGGTGAAGATTAGGGT+TGG | - | chr8.3:29513485-29513504 | None:intergenic | 45.0% |
| CATGCACAAATGTGGCTGGT+AGG | - | chr8.3:29514375-29514394 | None:intergenic | 50.0% | |
| CTACCAGCCACATTTGTGCA+TGG | + | chr8.3:29514373-29514392 | MS.gene99570:CDS | 50.0% | |
| CTCAAATGGAGCTAGGCTCA+GGG | + | chr8.3:29513660-29513679 | MS.gene99570:CDS | 50.0% | |
| CTGATGGGGCTGATTGAGTA+TGG | + | chr8.3:29514259-29514278 | MS.gene99570:CDS | 50.0% | |
| CTGTGATACATGCCAGGTTG+GGG | - | chr8.3:29513589-29513608 | None:intergenic | 50.0% | |
| GCTGTGATACATGCCAGGTT+GGG | - | chr8.3:29513590-29513609 | None:intergenic | 50.0% | |
| TCTCAAATGGAGCTAGGCTC+AGG | + | chr8.3:29513659-29513678 | MS.gene99570:CDS | 50.0% | |
| TTGTTTGTACCACCACCTCC+AGG | + | chr8.3:29513532-29513551 | MS.gene99570:CDS | 50.0% | |
| ! | GTGTTGATGGAGGTGAGTCA+GGG | - | chr8.3:29513411-29513430 | None:intergenic | 50.0% |
| ! | TGGAGGTGGTGGTACAAACA+AGG | - | chr8.3:29513533-29513552 | None:intergenic | 50.0% |
| !! | GGTGTTGGTGGTGATGGATT+TGG | - | chr8.3:29513504-29513523 | None:intergenic | 50.0% |
| !! | GTTGGTGGTGATGGATTTGG+TGG | - | chr8.3:29513501-29513520 | None:intergenic | 50.0% |
| CCAACCGGTAGCGATTTGAG+GGG | - | chr8.3:29513566-29513585 | None:intergenic | 55.0% | |
| CCTAGTGCTTCTGCTGGTGA+TGG | + | chr8.3:29514538-29514557 | MS.gene99570:CDS | 55.0% | |
| GAGACCCCTCAAATCGCTAC+CGG | + | chr8.3:29513559-29513578 | MS.gene99570:CDS | 55.0% | |
| GCCAACCGGTAGCGATTTGA+GGG | - | chr8.3:29513567-29513586 | None:intergenic | 55.0% | |
| GGCTGTGATACATGCCAGGT+TGG | - | chr8.3:29513591-29513610 | None:intergenic | 55.0% | |
| GTCTCAAATCCTGGAGGTGG+TGG | - | chr8.3:29513544-29513563 | None:intergenic | 55.0% | |
| TGAGGGGTCTCAAATCCTGG+AGG | - | chr8.3:29513550-29513569 | None:intergenic | 55.0% | |
| !! | AGAAGCACTAGGCGGAGTCA+TGG | - | chr8.3:29514530-29514549 | None:intergenic | 55.0% |
| !! | CCATCACCAGCAGAAGCACT+AGG | - | chr8.3:29514541-29514560 | None:intergenic | 55.0% |
| !! | GGTGTTGATGGAGGTGAGTC+AGG | - | chr8.3:29513412-29513431 | None:intergenic | 55.0% |
| !! | TCACCAGCAGAAGCACTAGG+CGG | - | chr8.3:29514538-29514557 | None:intergenic | 55.0% |
| ACTCCGCCTAGTGCTTCTGC+TGG | + | chr8.3:29514532-29514551 | MS.gene99570:CDS | 60.0% | |
| CCCCTCAAATCGCTACCGGT+TGG | + | chr8.3:29513563-29513582 | MS.gene99570:CDS | 60.0% | |
| GAGCTAGGCTCAGGGTTCCT+TGG | + | chr8.3:29513668-29513687 | MS.gene99570:CDS | 60.0% | |
| GGCCAACCGGTAGCGATTTG+AGG | - | chr8.3:29513568-29513587 | None:intergenic | 60.0% | |
| GGGGTCTCAAATCCTGGAGG+TGG | - | chr8.3:29513547-29513566 | None:intergenic | 60.0% | |
| ! | CATGCCAGGTTGGGGCCAAC+CGG | - | chr8.3:29513581-29513600 | None:intergenic | 65.0% |
| ! | GCTACCGGTTGGCCCCAACC+TGG | + | chr8.3:29513574-29513593 | MS.gene99570:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 29513376 | 29514597 | 29513376 | ID=MS.gene99570 |
| chr8.3 | mRNA | 29513376 | 29514597 | 29513376 | ID=MS.gene99570.t1;Parent=MS.gene99570 |
| chr8.3 | exon | 29513376 | 29513707 | 29513376 | ID=MS.gene99570.t1.exon1;Parent=MS.gene99570.t1 |
| chr8.3 | CDS | 29513376 | 29513707 | 29513376 | ID=cds.MS.gene99570.t1;Parent=MS.gene99570.t1 |
| chr8.3 | exon | 29514252 | 29514597 | 29514252 | ID=MS.gene99570.t1.exon2;Parent=MS.gene99570.t1 |
| chr8.3 | CDS | 29514252 | 29514597 | 29514252 | ID=cds.MS.gene99570.t1;Parent=MS.gene99570.t1 |
| Gene Sequence |
| Protein sequence |
