Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99571.t1 | AET03563.1 | 81.4 | 242 | 42 | 2 | 1 | 239 | 1 | 242 | 5.30E-105 | 390.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99571.t1 | Q8S9H7 | 41.7 | 60 | 35 | 0 | 85 | 144 | 119 | 178 | 6.8e-08 | 59.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99571.t1 | G7L8M9 | 81.4 | 242 | 42 | 2 | 1 | 239 | 1 | 242 | 3.8e-105 | 390.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene99571.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99571.t1 | MTR_8g072990 | 88.430 | 242 | 25 | 2 | 1 | 239 | 1 | 242 | 3.83e-143 | 400 |
| MS.gene99571.t1 | MTR_6g043490 | 64.919 | 248 | 58 | 5 | 1 | 238 | 1 | 229 | 2.03e-94 | 276 |
| MS.gene99571.t1 | MTR_6g043480 | 64.516 | 248 | 59 | 6 | 1 | 238 | 1 | 229 | 2.31e-92 | 271 |
| MS.gene99571.t1 | MTR_8g073050 | 52.245 | 245 | 88 | 8 | 1 | 238 | 1 | 223 | 9.22e-55 | 175 |
| MS.gene99571.t1 | MTR_5g027570 | 41.791 | 67 | 39 | 0 | 93 | 159 | 87 | 153 | 7.58e-14 | 68.9 |
| MS.gene99571.t1 | MTR_8g063870 | 31.343 | 134 | 85 | 3 | 92 | 223 | 89 | 217 | 3.28e-12 | 65.1 |
| MS.gene99571.t1 | MTR_5g027550 | 42.593 | 54 | 31 | 0 | 93 | 146 | 72 | 125 | 2.76e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99571.t1 | AT5G08520 | 43.396 | 53 | 30 | 0 | 95 | 147 | 115 | 167 | 1.98e-11 | 62.8 |
Find 74 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGTTGTTCCAACATATTA+TGG | 0.256138 | 8.3:+29546362 | MS.gene99571:CDS |
| CCATAATATGTTGGAACAAC+TGG | 0.277085 | 8.3:-29546362 | None:intergenic |
| AGTTGATTTGGAGCTTCGTT+TGG | 0.335545 | 8.3:+29546472 | MS.gene99571:CDS |
| TATTTGTGATGGGGATGATT+AGG | 0.340678 | 8.3:+29546105 | MS.gene99571:CDS |
| AGAGTGAGAGTTTCCTTTGC+AGG | 0.342620 | 8.3:-29546335 | None:intergenic |
| GTTGATTTGGAGCTTCGTTT+GGG | 0.348489 | 8.3:+29546473 | MS.gene99571:CDS |
| TGGTGTTGGTGGTGAAGATT+AGG | 0.365491 | 8.3:-29545230 | None:intergenic |
| GATGAAGATATGGGTATTGA+TGG | 0.385170 | 8.3:-29545170 | None:intergenic |
| GTTGGAGAACCCTAGCAATT+AGG | 0.390702 | 8.3:-29545343 | None:intergenic |
| TGGTGCAACAGATGAAGATA+TGG | 0.391943 | 8.3:-29545180 | None:intergenic |
| TGTATTAGTTTATTTGTGAT+GGG | 0.392456 | 8.3:+29546095 | MS.gene99571:intron |
| GCTATGCTGCTAGTTTCTTC+AGG | 0.401725 | 8.3:+29546198 | MS.gene99571:CDS |
| TTGTATTAGTTTATTTGTGA+TGG | 0.403857 | 8.3:+29546094 | MS.gene99571:intron |
| GAGCTGATGGTAAGGTAGTT+TGG | 0.407255 | 8.3:-29545250 | None:intergenic |
| GAATCAAAATTATGTATCAT+TGG | 0.435669 | 8.3:-29545200 | None:intergenic |
| AATGGCATGGTGTTTGATCT+TGG | 0.456252 | 8.3:-29545371 | None:intergenic |
| ACTACCAACTGTCCTCAATC+TGG | 0.459036 | 8.3:+29545305 | MS.gene99571:CDS |
| AGTTGGTAGTGATCATTTGA+TGG | 0.459982 | 8.3:-29545292 | None:intergenic |
| GTAAGGTAGTTTGGTGTTGG+TGG | 0.469673 | 8.3:-29545241 | None:intergenic |
| AAAGAAAATATGATTCCAAC+GGG | 0.472141 | 8.3:+29546255 | MS.gene99571:CDS |
| ATGGTAAGGTAGTTTGGTGT+TGG | 0.479447 | 8.3:-29545244 | None:intergenic |
| AAACCATGCACATATTCGTC+TGG | 0.484230 | 8.3:-29546227 | None:intergenic |
| TGCCATTCCCAAGTGGATCT+AGG | 0.486137 | 8.3:+29545387 | MS.gene99571:CDS |
| TGTCCTCAATCTGGCACTCA+TGG | 0.486448 | 8.3:+29545314 | MS.gene99571:CDS |
| TGGTGATGGAGAAGTTGATT+TGG | 0.487057 | 8.3:+29546460 | MS.gene99571:CDS |
| TTAGGTATGGACAAGGGAGA+TGG | 0.490096 | 8.3:+29546123 | MS.gene99571:CDS |
| ATGGTGGTAGCCTAATTGCT+AGG | 0.506606 | 8.3:+29545333 | MS.gene99571:CDS |
| GAAGATATGGGTATTGATGG+AGG | 0.506856 | 8.3:-29545167 | None:intergenic |
| GATCTAGGCACATGGTGTCT+TGG | 0.508481 | 8.3:+29545402 | MS.gene99571:CDS |
| CCTAGTGGTTCAGCTGGTGA+TGG | 0.511802 | 8.3:+29546446 | MS.gene99571:CDS |
| AGATATGGGTATTGATGGAG+GGG | 0.512610 | 8.3:-29545165 | None:intergenic |
| GCATAGCTTTGAACTTGTTG+TGG | 0.515534 | 8.3:-29546182 | None:intergenic |
| TAGTGATCATTTGATGGGAC+TGG | 0.528979 | 8.3:-29545286 | None:intergenic |
| TGGTCGTGTCCTTGAGCTGA+TGG | 0.529573 | 8.3:-29545263 | None:intergenic |
| AAGATATGGGTATTGATGGA+GGG | 0.533718 | 8.3:-29545166 | None:intergenic |
| ACTCCGCCTAGTGGTTCAGC+TGG | 0.543679 | 8.3:+29546440 | MS.gene99571:CDS |
| AAGGAAGTATGTAAGATCAA+TGG | 0.547109 | 8.3:-29545138 | None:intergenic |
| TGCCTAGATCCACTTGGGAA+TGG | 0.547210 | 8.3:-29545389 | None:intergenic |
| TGGTGGTAGCCTAATTGCTA+GGG | 0.547474 | 8.3:+29545334 | MS.gene99571:CDS |
| GTATTGATGGAGGGGAGTCA+AGG | 0.547727 | 8.3:-29545157 | None:intergenic |
| CATAATATGTTGGAACAACT+GGG | 0.548941 | 8.3:-29546361 | None:intergenic |
| GTGTCCTTGAGCTGATGGTA+AGG | 0.551347 | 8.3:-29545258 | None:intergenic |
| GCTTCTCCTCCATAATATGT+TGG | 0.555055 | 8.3:-29546371 | None:intergenic |
| AAAAGAAAATATGATTCCAA+CGG | 0.555446 | 8.3:+29546254 | MS.gene99571:CDS |
| GTTGGTAGTGATCATTTGAT+GGG | 0.561211 | 8.3:-29545291 | None:intergenic |
| CCACCATGAGTGCCAGATTG+AGG | 0.566054 | 8.3:-29545317 | None:intergenic |
| GTATTAGTTTATTTGTGATG+GGG | 0.567565 | 8.3:+29546096 | MS.gene99571:intron |
| CCATCACCAGCTGAACCACT+AGG | 0.572498 | 8.3:-29546446 | None:intergenic |
| GGTGCAACAGATGAAGATAT+GGG | 0.573397 | 8.3:-29545179 | None:intergenic |
| TGATGATGAGTTTATCCCGT+TGG | 0.580417 | 8.3:-29546270 | None:intergenic |
| TGTTTGATCTTGGTAACGGT+TGG | 0.581165 | 8.3:-29545361 | None:intergenic |
| GTGATGGGGATGATTAGGTA+TGG | 0.581299 | 8.3:+29546110 | MS.gene99571:CDS |
| TGCTAACAATGATCCTGCAA+AGG | 0.585046 | 8.3:+29546322 | MS.gene99571:CDS |
| GTAAGATCAATGGTCTCCAT+AGG | 0.586191 | 8.3:-29545128 | None:intergenic |
| ATGGTGTTTGATCTTGGTAA+CGG | 0.590660 | 8.3:-29545365 | None:intergenic |
| AGTGCCAGATTGAGGACAGT+TGG | 0.594443 | 8.3:-29545309 | None:intergenic |
| TTGGTGGTGAAGATTAGGAT+TGG | 0.600454 | 8.3:-29545225 | None:intergenic |
| TGAACCACTAGGCGGAGTCA+TGG | 0.600756 | 8.3:-29546435 | None:intergenic |
| CCCAAGTGGATCTAGGCACA+TGG | 0.602457 | 8.3:+29545394 | MS.gene99571:CDS |
| CATGCACATATTCGTCTGGT+AGG | 0.603146 | 8.3:-29546223 | None:intergenic |
| GTTGTTCCAACATATTATGG+AGG | 0.614847 | 8.3:+29546365 | MS.gene99571:CDS |
| ACCATGTGCCTAGATCCACT+TGG | 0.620902 | 8.3:-29545395 | None:intergenic |
| CCTCAATCTGGCACTCATGG+TGG | 0.624726 | 8.3:+29545317 | MS.gene99571:CDS |
| TTGATTTGGAGCTTCGTTTG+GGG | 0.630279 | 8.3:+29546474 | MS.gene99571:CDS |
| AGATCCACTTGGGAATGGCA+TGG | 0.630755 | 8.3:-29545384 | None:intergenic |
| CCATGTGCCTAGATCCACTT+GGG | 0.631806 | 8.3:-29545394 | None:intergenic |
| ACTACCTTACCATCAGCTCA+AGG | 0.650911 | 8.3:+29545254 | MS.gene99571:CDS |
| TGATCATTTGATGGGACTGG+TGG | 0.653895 | 8.3:-29545283 | None:intergenic |
| AACACCATGCCATTCCCAAG+TGG | 0.655209 | 8.3:+29545380 | MS.gene99571:CDS |
| GGGATGATTAGGTATGGACA+AGG | 0.664435 | 8.3:+29546116 | MS.gene99571:CDS |
| CTACCAGACGAATATGTGCA+TGG | 0.669323 | 8.3:+29546224 | MS.gene99571:CDS |
| ACTTCCATGACTCCGCCTAG+TGG | 0.676435 | 8.3:+29546431 | MS.gene99571:CDS |
| GGATGATTAGGTATGGACAA+GGG | 0.676501 | 8.3:+29546117 | MS.gene99571:CDS |
| TCACCAGCTGAACCACTAGG+CGG | 0.766297 | 8.3:-29546443 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAAATTTTTACCAAAAA+AGG | + | chr8.3:29545934-29545953 | MS.gene99571:intron | 10.0% |
| !! | TAAAATAATGACAAATATCA+GGG | - | chr8.3:29545598-29545617 | None:intergenic | 15.0% |
| !! | TATATTGACAAATTTATAGA+GGG | - | chr8.3:29545782-29545801 | None:intergenic | 15.0% |
| !! | TTAAAATAATGACAAATATC+AGG | - | chr8.3:29545599-29545618 | None:intergenic | 15.0% |
| !! | TTATATTGACAAATTTATAG+AGG | - | chr8.3:29545783-29545802 | None:intergenic | 15.0% |
| !!! | CATTATTTAATAACCTTTTT+TGG | - | chr8.3:29545950-29545969 | None:intergenic | 15.0% |
| !! | AAAAGAAAATATGATTCCAA+CGG | + | chr8.3:29546254-29546273 | MS.gene99571:CDS | 20.0% |
| !! | GAATCAAAATTATGTATCAT+TGG | - | chr8.3:29545203-29545222 | None:intergenic | 20.0% |
| !! | TACAAAAGTAAAATAAGAAC+AGG | - | chr8.3:29546079-29546098 | None:intergenic | 20.0% |
| !! | TATTATTCAATAACCTATGA+AGG | - | chr8.3:29545919-29545938 | None:intergenic | 20.0% |
| !!! | TGTATTAGTTTATTTGTGAT+GGG | + | chr8.3:29546095-29546114 | MS.gene99571:intron | 20.0% |
| !!! | TTGTATTAGTTTATTTGTGA+TGG | + | chr8.3:29546094-29546113 | MS.gene99571:intron | 20.0% |
| ! | AAAGAAAATATGATTCCAAC+GGG | + | chr8.3:29546255-29546274 | MS.gene99571:CDS | 25.0% |
| ! | ATAACCTATGAAGGTTTAAT+TGG | - | chr8.3:29545910-29545929 | None:intergenic | 25.0% |
| ! | ATCAGGGAAAGAAAAAAATT+GGG | - | chr8.3:29545582-29545601 | None:intergenic | 25.0% |
| ! | TATCAGGGAAAGAAAAAAAT+TGG | - | chr8.3:29545583-29545602 | None:intergenic | 25.0% |
| ! | TGCCAGAAAAGTTAAAATAA+TGG | - | chr8.3:29545671-29545690 | None:intergenic | 25.0% |
| ! | TTAAAATAATGGCCAATAAG+TGG | - | chr8.3:29545660-29545679 | None:intergenic | 25.0% |
| !! | GTATTAGTTTATTTGTGATG+GGG | + | chr8.3:29546096-29546115 | MS.gene99571:intron | 25.0% |
| ATCTCCAATTAAACCTTCAT+AGG | + | chr8.3:29545903-29545922 | MS.gene99571:intron | 30.0% | |
| CATAATATGTTGGAACAACT+GGG | - | chr8.3:29546364-29546383 | None:intergenic | 30.0% | |
| TCAGGGAAAGAAAAAAATTG+GGG | - | chr8.3:29545581-29545600 | None:intergenic | 30.0% | |
| TTCTGGCAATGATATTCTTA+CGG | + | chr8.3:29545683-29545702 | MS.gene99571:intron | 30.0% | |
| ! | AAGGAAGTATGTAAGATCAA+TGG | - | chr8.3:29545141-29545160 | None:intergenic | 30.0% |
| !!! | GGCCATTATTTTAACTTTTC+TGG | + | chr8.3:29545666-29545685 | MS.gene99571:intron | 30.0% |
| ATGGTGTTTGATCTTGGTAA+CGG | - | chr8.3:29545368-29545387 | None:intergenic | 35.0% | |
| CCAGTTGTTCCAACATATTA+TGG | + | chr8.3:29546362-29546381 | MS.gene99571:CDS | 35.0% | |
| CCATAATATGTTGGAACAAC+TGG | - | chr8.3:29546365-29546384 | None:intergenic | 35.0% | |
| GTTGTTCCAACATATTATGG+AGG | + | chr8.3:29546365-29546384 | MS.gene99571:CDS | 35.0% | |
| ! | TATTTGTGATGGGGATGATT+AGG | + | chr8.3:29546105-29546124 | MS.gene99571:CDS | 35.0% |
| !! | AAGATATGGGTATTGATGGA+GGG | - | chr8.3:29545169-29545188 | None:intergenic | 35.0% |
| !! | AGTTGGTAGTGATCATTTGA+TGG | - | chr8.3:29545295-29545314 | None:intergenic | 35.0% |
| !! | CTCATTTCTAGTCCACTTAT+TGG | + | chr8.3:29545645-29545664 | MS.gene99571:intron | 35.0% |
| !! | GATGAAGATATGGGTATTGA+TGG | - | chr8.3:29545173-29545192 | None:intergenic | 35.0% |
| !! | GTTGGTAGTGATCATTTGAT+GGG | - | chr8.3:29545294-29545313 | None:intergenic | 35.0% |
| AAACCATGCACATATTCGTC+TGG | - | chr8.3:29546230-29546249 | None:intergenic | 40.0% | |
| AATGGCATGGTGTTTGATCT+TGG | - | chr8.3:29545374-29545393 | None:intergenic | 40.0% | |
| GCTTCTCCTCCATAATATGT+TGG | - | chr8.3:29546374-29546393 | None:intergenic | 40.0% | |
| GGATGATTAGGTATGGACAA+GGG | + | chr8.3:29546117-29546136 | MS.gene99571:CDS | 40.0% | |
| GGTGCAACAGATGAAGATAT+GGG | - | chr8.3:29545182-29545201 | None:intergenic | 40.0% | |
| GTAAGATCAATGGTCTCCAT+AGG | - | chr8.3:29545131-29545150 | None:intergenic | 40.0% | |
| TAGTGATCATTTGATGGGAC+TGG | - | chr8.3:29545289-29545308 | None:intergenic | 40.0% | |
| TGCTAACAATGATCCTGCAA+AGG | + | chr8.3:29546322-29546341 | MS.gene99571:CDS | 40.0% | |
| TGGTGCAACAGATGAAGATA+TGG | - | chr8.3:29545183-29545202 | None:intergenic | 40.0% | |
| ! | TGATGATGAGTTTATCCCGT+TGG | - | chr8.3:29546273-29546292 | None:intergenic | 40.0% |
| !! | AGATATGGGTATTGATGGAG+GGG | - | chr8.3:29545168-29545187 | None:intergenic | 40.0% |
| !! | AGTTGATTTGGAGCTTCGTT+TGG | + | chr8.3:29546472-29546491 | MS.gene99571:CDS | 40.0% |
| !! | ATGGTAAGGTAGTTTGGTGT+TGG | - | chr8.3:29545247-29545266 | None:intergenic | 40.0% |
| !! | GAAGATATGGGTATTGATGG+AGG | - | chr8.3:29545170-29545189 | None:intergenic | 40.0% |
| !! | GCATAGCTTTGAACTTGTTG+TGG | - | chr8.3:29546185-29546204 | None:intergenic | 40.0% |
| !! | GTTGATTTGGAGCTTCGTTT+GGG | + | chr8.3:29546473-29546492 | MS.gene99571:CDS | 40.0% |
| !! | TGGTGATGGAGAAGTTGATT+TGG | + | chr8.3:29546460-29546479 | MS.gene99571:CDS | 40.0% |
| !! | TGTTTGATCTTGGTAACGGT+TGG | - | chr8.3:29545364-29545383 | None:intergenic | 40.0% |
| !! | TTGATTTGGAGCTTCGTTTG+GGG | + | chr8.3:29546474-29546493 | MS.gene99571:CDS | 40.0% |
| !! | TTGGTGGTGAAGATTAGGAT+TGG | - | chr8.3:29545228-29545247 | None:intergenic | 40.0% |
| ACTACCAACTGTCCTCAATC+TGG | + | chr8.3:29545305-29545324 | MS.gene99571:CDS | 45.0% | |
| ACTACCTTACCATCAGCTCA+AGG | + | chr8.3:29545254-29545273 | MS.gene99571:CDS | 45.0% | |
| AGAGTGAGAGTTTCCTTTGC+AGG | - | chr8.3:29546338-29546357 | None:intergenic | 45.0% | |
| ATGGTGGTAGCCTAATTGCT+AGG | + | chr8.3:29545333-29545352 | MS.gene99571:CDS | 45.0% | |
| CATGCACATATTCGTCTGGT+AGG | - | chr8.3:29546226-29546245 | None:intergenic | 45.0% | |
| CTACCAGACGAATATGTGCA+TGG | + | chr8.3:29546224-29546243 | MS.gene99571:CDS | 45.0% | |
| GAGCTGATGGTAAGGTAGTT+TGG | - | chr8.3:29545253-29545272 | None:intergenic | 45.0% | |
| GGGATGATTAGGTATGGACA+AGG | + | chr8.3:29546116-29546135 | MS.gene99571:CDS | 45.0% | |
| GTTGGAGAACCCTAGCAATT+AGG | - | chr8.3:29545346-29545365 | None:intergenic | 45.0% | |
| TGATCATTTGATGGGACTGG+TGG | - | chr8.3:29545286-29545305 | None:intergenic | 45.0% | |
| TGGTGGTAGCCTAATTGCTA+GGG | + | chr8.3:29545334-29545353 | MS.gene99571:CDS | 45.0% | |
| TTAGGTATGGACAAGGGAGA+TGG | + | chr8.3:29546123-29546142 | MS.gene99571:CDS | 45.0% | |
| ! | GCTATGCTGCTAGTTTCTTC+AGG | + | chr8.3:29546198-29546217 | MS.gene99571:CDS | 45.0% |
| ! | GTGATGGGGATGATTAGGTA+TGG | + | chr8.3:29546110-29546129 | MS.gene99571:CDS | 45.0% |
| !! | GTAAGGTAGTTTGGTGTTGG+TGG | - | chr8.3:29545244-29545263 | None:intergenic | 45.0% |
| !! | TGGTGTTGGTGGTGAAGATT+AGG | - | chr8.3:29545233-29545252 | None:intergenic | 45.0% |
| !! | AAAAAAAATAATTAGATTTA+AGG | - | chr8.3:29545462-29545481 | None:intergenic | 5.0% |
| !!! | AATTTAAATATCAAATTTTA+AGG | - | chr8.3:29545998-29546017 | None:intergenic | 5.0% |
| AACACCATGCCATTCCCAAG+TGG | + | chr8.3:29545380-29545399 | MS.gene99571:CDS | 50.0% | |
| ACCATGTGCCTAGATCCACT+TGG | - | chr8.3:29545398-29545417 | None:intergenic | 50.0% | |
| AGATCCACTTGGGAATGGCA+TGG | - | chr8.3:29545387-29545406 | None:intergenic | 50.0% | |
| AGTGCCAGATTGAGGACAGT+TGG | - | chr8.3:29545312-29545331 | None:intergenic | 50.0% | |
| CCATGTGCCTAGATCCACTT+GGG | - | chr8.3:29545397-29545416 | None:intergenic | 50.0% | |
| GATCTAGGCACATGGTGTCT+TGG | + | chr8.3:29545402-29545421 | MS.gene99571:CDS | 50.0% | |
| GTGTCCTTGAGCTGATGGTA+AGG | - | chr8.3:29545261-29545280 | None:intergenic | 50.0% | |
| TGCCATTCCCAAGTGGATCT+AGG | + | chr8.3:29545387-29545406 | MS.gene99571:CDS | 50.0% | |
| TGCCTAGATCCACTTGGGAA+TGG | - | chr8.3:29545392-29545411 | None:intergenic | 50.0% | |
| TGTCCTCAATCTGGCACTCA+TGG | + | chr8.3:29545314-29545333 | MS.gene99571:CDS | 50.0% | |
| ! | GTATTGATGGAGGGGAGTCA+AGG | - | chr8.3:29545160-29545179 | None:intergenic | 50.0% |
| ACTTCCATGACTCCGCCTAG+TGG | + | chr8.3:29546431-29546450 | MS.gene99571:CDS | 55.0% | |
| CCACCATGAGTGCCAGATTG+AGG | - | chr8.3:29545320-29545339 | None:intergenic | 55.0% | |
| CCATCACCAGCTGAACCACT+AGG | - | chr8.3:29546449-29546468 | None:intergenic | 55.0% | |
| CCCAAGTGGATCTAGGCACA+TGG | + | chr8.3:29545394-29545413 | MS.gene99571:CDS | 55.0% | |
| CCTAGTGGTTCAGCTGGTGA+TGG | + | chr8.3:29546446-29546465 | MS.gene99571:CDS | 55.0% | |
| CCTCAATCTGGCACTCATGG+TGG | + | chr8.3:29545317-29545336 | MS.gene99571:CDS | 55.0% | |
| TCACCAGCTGAACCACTAGG+CGG | - | chr8.3:29546446-29546465 | None:intergenic | 55.0% | |
| TGAACCACTAGGCGGAGTCA+TGG | - | chr8.3:29546438-29546457 | None:intergenic | 55.0% | |
| TGGTCGTGTCCTTGAGCTGA+TGG | - | chr8.3:29545266-29545285 | None:intergenic | 55.0% | |
| ACTCCGCCTAGTGGTTCAGC+TGG | + | chr8.3:29546440-29546459 | MS.gene99571:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 29545125 | 29546505 | 29545125 | ID=MS.gene99571 |
| chr8.3 | mRNA | 29545125 | 29546505 | 29545125 | ID=MS.gene99571.t1;Parent=MS.gene99571 |
| chr8.3 | exon | 29545125 | 29545441 | 29545125 | ID=MS.gene99571.t1.exon1;Parent=MS.gene99571.t1 |
| chr8.3 | CDS | 29545125 | 29545441 | 29545125 | ID=cds.MS.gene99571.t1;Parent=MS.gene99571.t1 |
| chr8.3 | exon | 29546103 | 29546505 | 29546103 | ID=MS.gene99571.t1.exon2;Parent=MS.gene99571.t1 |
| chr8.3 | CDS | 29546103 | 29546505 | 29546103 | ID=cds.MS.gene99571.t1;Parent=MS.gene99571.t1 |
| Gene Sequence |
| Protein sequence |
