Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99606.t1 | XP_024632961.1 | 85.4 | 536 | 54 | 2 | 1 | 512 | 1 | 536 | 6.30E-268 | 932.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99606.t1 | Q9SZL8 | 28.5 | 470 | 313 | 6 | 32 | 499 | 70 | 518 | 2.9e-56 | 221.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99606.t1 | D3YBB9 | 79.7 | 512 | 104 | 0 | 1 | 512 | 49 | 560 | 7.8e-244 | 852.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene99606.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99606.t1 | MTR_0558s0020 | 87.838 | 296 | 35 | 1 | 1 | 295 | 1 | 296 | 0.0 | 550 |
| MS.gene99606.t1 | MTR_1g083640 | 83.451 | 284 | 31 | 1 | 1 | 268 | 1 | 284 | 2.17e-176 | 498 |
| MS.gene99606.t1 | MTR_8g446020 | 73.898 | 295 | 38 | 1 | 1 | 295 | 1 | 256 | 1.07e-155 | 444 |
| MS.gene99606.t1 | MTR_6g090505 | 83.966 | 237 | 38 | 0 | 65 | 301 | 1 | 237 | 1.27e-146 | 425 |
| MS.gene99606.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 396 | 495 | 230 | 306 | 8.73e-35 | 134 |
| MS.gene99606.t1 | MTR_2g014100 | 82.449 | 245 | 34 | 1 | 1 | 236 | 1 | 245 | 3.22e-145 | 417 |
| MS.gene99606.t1 | MTR_0337s0040 | 72.308 | 260 | 32 | 2 | 1 | 259 | 1 | 221 | 1.65e-127 | 371 |
| MS.gene99606.t1 | MTR_3g008240 | 84.729 | 203 | 30 | 1 | 1 | 202 | 1 | 203 | 2.04e-121 | 355 |
| MS.gene99606.t1 | MTR_4g040430 | 84.158 | 202 | 28 | 1 | 1 | 202 | 1 | 198 | 3.70e-121 | 354 |
| MS.gene99606.t1 | MTR_5g071590 | 73.889 | 180 | 34 | 2 | 1 | 167 | 1 | 180 | 1.54e-92 | 280 |
| MS.gene99606.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 91 | 232 | 3 | 144 | 2.06e-89 | 271 |
| MS.gene99606.t1 | MTR_0019s0290 | 82.237 | 152 | 27 | 0 | 82 | 233 | 9 | 160 | 1.39e-88 | 269 |
| MS.gene99606.t1 | MTR_1281s0010 | 81.651 | 109 | 20 | 0 | 19 | 127 | 1 | 109 | 1.66e-58 | 189 |
| MS.gene99606.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 1.45e-39 | 147 |
| MS.gene99606.t1 | MTR_0337s0060 | 93.939 | 66 | 4 | 0 | 447 | 512 | 21 | 86 | 1.29e-35 | 133 |
| MS.gene99606.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 3.57e-32 | 131 |
| MS.gene99606.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 1.46e-31 | 121 |
| MS.gene99606.t1 | MTR_1g070355 | 26.852 | 324 | 216 | 6 | 41 | 362 | 80 | 384 | 1.09e-19 | 92.8 |
| MS.gene99606.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 5.72e-15 | 77.8 |
| MS.gene99606.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.31e-13 | 66.6 |
| MS.gene99606.t1 | MTR_4g035820 | 22.414 | 290 | 192 | 7 | 17 | 299 | 61 | 324 | 2.00e-13 | 73.6 |
| MS.gene99606.t1 | MTR_1g013060 | 29.954 | 217 | 131 | 8 | 40 | 253 | 29 | 227 | 9.23e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99606.t1 | AT4G38180 | 28.842 | 475 | 305 | 7 | 32 | 499 | 70 | 518 | 6.67e-62 | 217 |
| MS.gene99606.t1 | AT3G06250 | 26.477 | 491 | 284 | 11 | 34 | 521 | 189 | 605 | 2.19e-42 | 162 |
| MS.gene99606.t1 | AT3G06250 | 26.477 | 491 | 284 | 11 | 34 | 521 | 189 | 605 | 2.19e-42 | 162 |
| MS.gene99606.t1 | AT3G06250 | 26.477 | 491 | 284 | 11 | 34 | 521 | 189 | 605 | 2.19e-42 | 162 |
| MS.gene99606.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 1.24e-41 | 160 |
| MS.gene99606.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 1.24e-41 | 160 |
| MS.gene99606.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 1.24e-41 | 160 |
| MS.gene99606.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 1.24e-41 | 160 |
| MS.gene99606.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 1.24e-41 | 160 |
| MS.gene99606.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 3.83e-41 | 157 |
| MS.gene99606.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 6.75e-41 | 157 |
| MS.gene99606.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 6.75e-41 | 157 |
| MS.gene99606.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 7.34e-41 | 157 |
| MS.gene99606.t1 | AT2G27110 | 25.506 | 494 | 305 | 11 | 10 | 499 | 29 | 463 | 9.69e-39 | 151 |
| MS.gene99606.t1 | AT2G27110 | 25.506 | 494 | 305 | 11 | 10 | 499 | 29 | 463 | 9.69e-39 | 151 |
| MS.gene99606.t1 | AT4G38170 | 28.623 | 276 | 186 | 4 | 235 | 507 | 24 | 291 | 2.68e-38 | 147 |
| MS.gene99606.t1 | AT2G27110 | 29.758 | 289 | 195 | 3 | 213 | 499 | 36 | 318 | 7.59e-38 | 148 |
| MS.gene99606.t1 | AT5G18960 | 25.249 | 503 | 298 | 13 | 24 | 521 | 200 | 629 | 1.32e-37 | 148 |
| MS.gene99606.t1 | AT5G18960 | 25.249 | 503 | 298 | 13 | 24 | 521 | 200 | 629 | 1.32e-37 | 148 |
| MS.gene99606.t1 | AT1G10240 | 26.292 | 445 | 290 | 13 | 49 | 482 | 62 | 479 | 7.42e-37 | 145 |
| MS.gene99606.t1 | AT1G10240 | 26.292 | 445 | 290 | 13 | 49 | 482 | 62 | 479 | 7.42e-37 | 145 |
| MS.gene99606.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 1.52e-36 | 144 |
| MS.gene99606.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 1.52e-36 | 144 |
| MS.gene99606.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 1.59e-36 | 144 |
| MS.gene99606.t1 | AT3G22170 | 22.338 | 479 | 331 | 9 | 34 | 507 | 69 | 511 | 8.79e-35 | 139 |
| MS.gene99606.t1 | AT3G22170 | 22.338 | 479 | 331 | 9 | 34 | 507 | 69 | 511 | 8.79e-35 | 139 |
| MS.gene99606.t1 | AT2G32250 | 24.346 | 497 | 299 | 12 | 4 | 495 | 10 | 434 | 2.21e-32 | 132 |
| MS.gene99606.t1 | AT2G32250 | 24.346 | 497 | 299 | 12 | 4 | 495 | 10 | 434 | 2.21e-32 | 132 |
| MS.gene99606.t1 | AT2G32250 | 24.346 | 497 | 299 | 12 | 4 | 495 | 10 | 434 | 2.22e-32 | 132 |
| MS.gene99606.t1 | AT2G32250 | 24.346 | 497 | 299 | 12 | 4 | 495 | 10 | 434 | 3.18e-32 | 132 |
| MS.gene99606.t1 | AT2G32250 | 24.346 | 497 | 299 | 12 | 4 | 495 | 10 | 434 | 3.18e-32 | 132 |
| MS.gene99606.t1 | AT2G32250 | 24.346 | 497 | 299 | 12 | 4 | 495 | 10 | 434 | 3.18e-32 | 132 |
| MS.gene99606.t1 | AT1G80010 | 25.373 | 469 | 299 | 15 | 41 | 493 | 101 | 534 | 7.24e-32 | 130 |
| MS.gene99606.t1 | AT2G32250 | 24.390 | 451 | 267 | 10 | 50 | 495 | 12 | 393 | 1.88e-31 | 129 |
| MS.gene99606.t1 | AT2G32250 | 24.390 | 451 | 267 | 10 | 50 | 495 | 12 | 393 | 1.98e-31 | 129 |
| MS.gene99606.t1 | AT1G52520 | 23.371 | 445 | 304 | 9 | 41 | 484 | 91 | 499 | 1.37e-28 | 120 |
| MS.gene99606.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 4.66e-28 | 119 |
| MS.gene99606.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 4.71e-28 | 119 |
| MS.gene99606.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 4.99e-28 | 119 |
| MS.gene99606.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 5.35e-28 | 119 |
| MS.gene99606.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 5.35e-28 | 119 |
| MS.gene99606.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 7.45e-28 | 118 |
| MS.gene99606.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 7.45e-28 | 118 |
| MS.gene99606.t1 | AT5G28530 | 22.970 | 431 | 245 | 15 | 40 | 462 | 60 | 411 | 5.71e-17 | 84.7 |
| MS.gene99606.t1 | AT5G28530 | 22.970 | 431 | 245 | 15 | 40 | 462 | 60 | 411 | 6.04e-17 | 84.3 |
Find 71 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 7.1:-39091521 | MS.gene99606:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 7.1:-39091830 | MS.gene99606:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 7.1:-39091563 | MS.gene99606:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 7.1:-39092614 | MS.gene99606:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 7.1:-39092111 | MS.gene99606:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 7.1:-39092078 | MS.gene99606:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 7.1:+39091984 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 7.1:-39091789 | MS.gene99606:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 7.1:+39091966 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 7.1:+39092564 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 7.1:-39091689 | MS.gene99606:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 7.1:-39092557 | MS.gene99606:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 7.1:-39092565 | MS.gene99606:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 7.1:-39091690 | MS.gene99606:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 7.1:+39093094 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 7.1:-39093323 | MS.gene99606:CDS |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 7.1:-39093252 | MS.gene99606:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 7.1:-39092917 | MS.gene99606:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 7.1:-39093035 | MS.gene99606:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 7.1:+39091973 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 7.1:-39093052 | MS.gene99606:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 7.1:-39093169 | MS.gene99606:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 7.1:-39092887 | MS.gene99606:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 7.1:-39093398 | MS.gene99606:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 7.1:-39091899 | MS.gene99606:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 7.1:-39091735 | MS.gene99606:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 7.1:-39093203 | MS.gene99606:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 7.1:-39092842 | MS.gene99606:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 7.1:+39093058 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 7.1:-39093265 | MS.gene99606:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 7.1:-39092774 | MS.gene99606:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 7.1:+39092947 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 7.1:-39093209 | MS.gene99606:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 7.1:+39092098 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 7.1:-39091788 | MS.gene99606:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 7.1:-39092761 | MS.gene99606:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 7.1:-39091549 | MS.gene99606:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 7.1:+39091469 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 7.1:-39092855 | MS.gene99606:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 7.1:+39092669 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 7.1:+39092959 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 7.1:-39091702 | MS.gene99606:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 7.1:+39092803 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 7.1:-39091530 | MS.gene99606:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 7.1:-39091684 | MS.gene99606:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 7.1:-39092999 | MS.gene99606:CDS |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 7.1:+39091581 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 7.1:-39093158 | MS.gene99606:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 7.1:+39091586 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 7.1:-39093157 | MS.gene99606:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 7.1:-39093333 | MS.gene99606:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 7.1:+39091953 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 7.1:-39092707 | MS.gene99606:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 7.1:-39093374 | MS.gene99606:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 7.1:-39092839 | MS.gene99606:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 7.1:-39093000 | MS.gene99606:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 7.1:+39091468 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 7.1:-39093409 | MS.gene99606:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 7.1:-39092848 | MS.gene99606:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 7.1:-39091967 | MS.gene99606:CDS |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 7.1:-39092768 | MS.gene99606:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 7.1:-39092854 | MS.gene99606:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 7.1:-39092765 | MS.gene99606:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 7.1:-39091471 | MS.gene99606:intron |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 7.1:+39093109 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 7.1:+39091733 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 7.1:-39092834 | MS.gene99606:CDS |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 7.1:-39091898 | MS.gene99606:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 7.1:-39091548 | MS.gene99606:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 7.1:+39090998 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 7.1:-39091971 | MS.gene99606:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTCTATAAGATATATAAG+TGG | - | chr7.1:39091420-39091439 | MS.gene99606:intron | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr7.1:39091211-39091230 | MS.gene99606:intron | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | - | chr7.1:39091421-39091440 | MS.gene99606:intron | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr7.1:39091155-39091174 | MS.gene99606:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr7.1:39092038-39092057 | MS.gene99606:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr7.1:39092660-39092679 | MS.gene99606:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr7.1:39092010-39092029 | MS.gene99606:CDS | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr7.1:39092498-39092517 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr7.1:39091217-39091236 | MS.gene99606:intron | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr7.1:39091855-39091874 | MS.gene99606:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr7.1:39091881-39091900 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr7.1:39093031-39093050 | None:intergenic | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | - | chr7.1:39091087-39091106 | MS.gene99606:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr7.1:39092857-39092876 | MS.gene99606:CDS | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr7.1:39091046-39091065 | MS.gene99606:intron | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr7.1:39091928-39091947 | MS.gene99606:CDS | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr7.1:39092996-39093015 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr7.1:39093031-39093050 | MS.gene99606:CDS | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr7.1:39092590-39092609 | MS.gene99606:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr7.1:39092030-39092049 | MS.gene99606:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr7.1:39092286-39092305 | MS.gene99606:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr7.1:39093132-39093151 | MS.gene99606:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr7.1:39091207-39091226 | None:intergenic | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr7.1:39092037-39092056 | MS.gene99606:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr7.1:39091533-39091552 | MS.gene99606:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr7.1:39092664-39092683 | MS.gene99606:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr7.1:39093133-39093152 | MS.gene99606:CDS | 25.0% |
| AAACACATATGATCTTTCCA+TGG | + | chr7.1:39092101-39092120 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr7.1:39091263-39091282 | MS.gene99606:intron | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr7.1:39091863-39091882 | MS.gene99606:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr7.1:39092631-39092650 | MS.gene99606:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr7.1:39091566-39091585 | MS.gene99606:CDS | 30.0% | |
| ATATTAACTTCATCTGAGAG+TGG | - | chr7.1:39091011-39091030 | MS.gene99606:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr7.1:39092632-39092651 | MS.gene99606:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr7.1:39092325-39092344 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | + | chr7.1:39093204-39093223 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr7.1:39091806-39091825 | MS.gene99606:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | chr7.1:39091251-39091270 | MS.gene99606:intron | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr7.1:39093036-39093055 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | - | chr7.1:39091967-39091986 | MS.gene99606:CDS | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr7.1:39093034-39093053 | MS.gene99606:CDS | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr7.1:39092546-39092565 | MS.gene99606:intron | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr7.1:39093205-39093224 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr7.1:39091859-39091878 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr7.1:39091352-39091371 | MS.gene99606:intron | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr7.1:39091097-39091116 | MS.gene99606:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr7.1:39092842-39092861 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr7.1:39091262-39091281 | MS.gene99606:intron | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr7.1:39091734-39091753 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr7.1:39092976-39092995 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr7.1:39091620-39091639 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr7.1:39092245-39092264 | MS.gene99606:intron | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr7.1:39091464-39091483 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr7.1:39091385-39091404 | MS.gene99606:intron | 30.0% |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr7.1:39093091-39093110 | MS.gene99606:CDS | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr7.1:39091610-39091629 | MS.gene99606:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr7.1:39092439-39092458 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr7.1:39092489-39092508 | MS.gene99606:intron | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr7.1:39093316-39093335 | MS.gene99606:CDS | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr7.1:39093216-39093235 | MS.gene99606:CDS | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr7.1:39091942-39091961 | MS.gene99606:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr7.1:39093217-39093236 | MS.gene99606:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr7.1:39093313-39093332 | MS.gene99606:CDS | 30.0% |
| !!! | AAGACATAGCCAGTATTTTT+TGG | - | chr7.1:39091768-39091787 | MS.gene99606:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | - | chr7.1:39091769-39091788 | MS.gene99606:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr7.1:39093381-39093400 | MS.gene99606:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr7.1:39092501-39092520 | MS.gene99606:intron | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr7.1:39092871-39092890 | MS.gene99606:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr7.1:39091168-39091187 | MS.gene99606:intron | 35.0% | |
| CATAAATTCCAAGGCAAGAT+AGG | + | chr7.1:39092068-39092087 | None:intergenic | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr7.1:39092872-39092891 | MS.gene99606:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr7.1:39091503-39091522 | MS.gene99606:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | + | chr7.1:39093206-39093225 | None:intergenic | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr7.1:39091351-39091370 | MS.gene99606:intron | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | - | chr7.1:39092718-39092737 | MS.gene99606:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr7.1:39091346-39091365 | MS.gene99606:intron | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr7.1:39091565-39091584 | MS.gene99606:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr7.1:39091288-39091307 | MS.gene99606:intron | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr7.1:39091646-39091665 | MS.gene99606:CDS | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | + | chr7.1:39092077-39092096 | None:intergenic | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr7.1:39091329-39091348 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr7.1:39092342-39092361 | MS.gene99606:intron | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr7.1:39093154-39093173 | MS.gene99606:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr7.1:39092801-39092820 | MS.gene99606:CDS | 35.0% |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr7.1:39091948-39091967 | MS.gene99606:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr7.1:39092674-39092693 | MS.gene99606:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr7.1:39092514-39092533 | MS.gene99606:intron | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr7.1:39093383-39093402 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr7.1:39092731-39092750 | MS.gene99606:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr7.1:39093323-39093342 | MS.gene99606:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr7.1:39092385-39092404 | MS.gene99606:intron | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr7.1:39093384-39093403 | MS.gene99606:CDS | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr7.1:39092837-39092856 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr7.1:39092195-39092214 | None:intergenic | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr7.1:39091022-39091041 | MS.gene99606:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr7.1:39093048-39093067 | MS.gene99606:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr7.1:39093280-39093299 | MS.gene99606:CDS | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | - | chr7.1:39092081-39092100 | MS.gene99606:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr7.1:39093279-39093298 | MS.gene99606:CDS | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr7.1:39093047-39093066 | MS.gene99606:CDS | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr7.1:39092449-39092468 | MS.gene99606:intron | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr7.1:39092191-39092210 | MS.gene99606:intron | 40.0% | |
| TCCATCTGCCCAAAAAATAC+TGG | + | chr7.1:39091780-39091799 | None:intergenic | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr7.1:39092450-39092469 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | chr7.1:39092309-39092328 | MS.gene99606:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr7.1:39093186-39093205 | MS.gene99606:CDS | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr7.1:39092899-39092918 | MS.gene99606:CDS | 40.0% |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr7.1:39093326-39093345 | MS.gene99606:CDS | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr7.1:39092730-39092749 | MS.gene99606:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr7.1:39091302-39091321 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr7.1:39091572-39091591 | MS.gene99606:CDS | 40.0% |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr7.1:39091655-39091674 | MS.gene99606:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr7.1:39091713-39091732 | MS.gene99606:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr7.1:39091314-39091333 | None:intergenic | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr7.1:39092690-39092709 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr7.1:39092949-39092968 | MS.gene99606:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr7.1:39093301-39093320 | None:intergenic | 45.0% | |
| CTCAAGTAGCACAAATGCTC+TGG | + | chr7.1:39091476-39091495 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr7.1:39091356-39091375 | MS.gene99606:intron | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr7.1:39091652-39091671 | MS.gene99606:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | - | chr7.1:39092890-39092909 | MS.gene99606:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr7.1:39093199-39093218 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr7.1:39093281-39093300 | MS.gene99606:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr7.1:39091754-39091773 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr7.1:39091365-39091384 | None:intergenic | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr7.1:39092753-39092772 | MS.gene99606:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr7.1:39092736-39092755 | MS.gene99606:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr7.1:39091368-39091387 | MS.gene99606:intron | 45.0% |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | - | chr7.1:39091776-39091795 | MS.gene99606:CDS | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr7.1:39092457-39092476 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr7.1:39092453-39092472 | MS.gene99606:intron | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | - | chr7.1:39093236-39093255 | MS.gene99606:CDS | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr7.1:39092954-39092973 | None:intergenic | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr7.1:39092685-39092704 | MS.gene99606:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | - | chr7.1:39093237-39093256 | MS.gene99606:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr7.1:39092522-39092541 | MS.gene99606:intron | 50.0% | |
| TGGGTGATCCTATCTTGCCT+TGG | - | chr7.1:39092057-39092076 | MS.gene99606:CDS | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr7.1:39092521-39092540 | MS.gene99606:intron | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr7.1:39091578-39091597 | MS.gene99606:CDS | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr7.1:39092470-39092489 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | chr7.1:39092955-39092974 | None:intergenic | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr7.1:39091659-39091678 | MS.gene99606:CDS | 55.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr7.1:39091581-39091600 | MS.gene99606:CDS | 55.0% |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr7.1:39091586-39091605 | MS.gene99606:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 39091002 | 39093440 | 39091002 | ID=MS.gene99606 |
| chr7.1 | mRNA | 39091002 | 39093440 | 39091002 | ID=MS.gene99606.t1;Parent=MS.gene99606 |
| chr7.1 | exon | 39092558 | 39093440 | 39092558 | ID=MS.gene99606.t1.exon1;Parent=MS.gene99606.t1 |
| chr7.1 | CDS | 39092558 | 39093440 | 39092558 | ID=cds.MS.gene99606.t1;Parent=MS.gene99606.t1 |
| chr7.1 | exon | 39091472 | 39092123 | 39091472 | ID=MS.gene99606.t1.exon2;Parent=MS.gene99606.t1 |
| chr7.1 | CDS | 39091472 | 39092123 | 39091472 | ID=cds.MS.gene99606.t1;Parent=MS.gene99606.t1 |
| chr7.1 | exon | 39091002 | 39091041 | 39091002 | ID=MS.gene99606.t1.exon3;Parent=MS.gene99606.t1 |
| chr7.1 | CDS | 39091002 | 39091041 | 39091002 | ID=cds.MS.gene99606.t1;Parent=MS.gene99606.t1 |
| Gene Sequence |
| Protein sequence |
