Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99685.t1 | XP_003614031.1 | 84 | 525 | 59 | 6 | 1 | 511 | 1 | 514 | 6.10E-191 | 677.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99685.t1 | G7JWR4 | 84.0 | 525 | 59 | 6 | 1 | 511 | 1 | 514 | 4.4e-191 | 677.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene99685.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99685.t1 | MTR_5g043930 | 90.095 | 525 | 27 | 6 | 1 | 511 | 1 | 514 | 0.0 | 839 |
| MS.gene99685.t1 | MTR_4g082980 | 40.665 | 541 | 200 | 17 | 1 | 511 | 1 | 450 | 8.92e-71 | 233 |
| MS.gene99685.t1 | MTR_4g109340 | 33.211 | 545 | 258 | 25 | 6 | 511 | 13 | 490 | 4.44e-54 | 190 |
| MS.gene99685.t1 | MTR_3g023760 | 34.234 | 222 | 104 | 6 | 5 | 213 | 13 | 205 | 1.61e-19 | 91.7 |
| MS.gene99685.t1 | MTR_0160s0030 | 42.466 | 73 | 27 | 1 | 439 | 511 | 284 | 341 | 2.52e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99685.t1 | AT1G26610 | 43.019 | 530 | 195 | 22 | 5 | 511 | 10 | 455 | 6.18e-93 | 291 |
| MS.gene99685.t1 | AT1G26590 | 33.263 | 475 | 158 | 20 | 5 | 465 | 10 | 339 | 1.55e-36 | 139 |
| MS.gene99685.t1 | AT1G26590 | 33.263 | 475 | 158 | 20 | 5 | 465 | 10 | 339 | 1.55e-36 | 139 |
| MS.gene99685.t1 | AT1G26590 | 33.263 | 475 | 158 | 20 | 5 | 465 | 10 | 339 | 1.55e-36 | 139 |
| MS.gene99685.t1 | AT1G26590 | 33.193 | 476 | 159 | 20 | 5 | 466 | 28 | 358 | 3.75e-36 | 138 |
| MS.gene99685.t1 | AT2G45120 | 35.135 | 111 | 58 | 3 | 406 | 511 | 203 | 304 | 9.66e-11 | 63.5 |
Find 86 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGAAAGAGATTGGATTT+AGG | 0.149234 | 5.3:-31545722 | MS.gene99685:CDS |
| TTGAAAATCTTGTTACAAAT+TGG | 0.152666 | 5.3:+31544564 | None:intergenic |
| CATCATTTCCTCCAATAAAA+TGG | 0.153454 | 5.3:+31544508 | None:intergenic |
| AGAGAAAGAGATTGGATTTA+GGG | 0.199212 | 5.3:-31545721 | MS.gene99685:CDS |
| GATGATGGTAACCTTATTTA+TGG | 0.208436 | 5.3:-31545683 | MS.gene99685:CDS |
| GTTTCTGATAATTCTGATTC+TGG | 0.223352 | 5.3:-31545047 | MS.gene99685:CDS |
| GTCTAGAGATTCTACTTATA+AGG | 0.238762 | 5.3:-31545264 | MS.gene99685:CDS |
| TTCCTATTGCTTTGTGCCTT+TGG | 0.256242 | 5.3:+31544669 | None:intergenic |
| AAGATGAAATCGGTCGAAAT+TGG | 0.290349 | 5.3:-31545074 | MS.gene99685:CDS |
| GCAGCAGCAGCAGGAGGTGC+AGG | 0.291343 | 5.3:+31544438 | None:intergenic |
| TTCAAGTCAGGACAAGCTTT+AGG | 0.299867 | 5.3:-31544546 | MS.gene99685:CDS |
| AAATTGTTCTTCTTCGGTTT+CGG | 0.316942 | 5.3:-31545333 | MS.gene99685:CDS |
| TGAATTCAAGAAAGTAGTTT+TGG | 0.325143 | 5.3:-31544862 | MS.gene99685:CDS |
| TCAAGTCAGGACAAGCTTTA+GGG | 0.329356 | 5.3:-31544545 | MS.gene99685:CDS |
| AGTCTTCGTCTTCGCTTCAT+TGG | 0.341040 | 5.3:-31545358 | MS.gene99685:CDS |
| TCTCTCTAAGACCATAAATA+AGG | 0.341554 | 5.3:+31545672 | None:intergenic |
| GTCTTCGTCTTCGCTTCATT+GGG | 0.345040 | 5.3:-31545357 | MS.gene99685:CDS |
| TTGGGGAAATTGTTCTTCTT+CGG | 0.374225 | 5.3:-31545339 | MS.gene99685:CDS |
| AATCTCTTGGTGGTCACATT+AGG | 0.382747 | 5.3:-31545844 | MS.gene99685:CDS |
| TGTCCGTGAAAAGCAGAAAT+TGG | 0.395743 | 5.3:-31545477 | MS.gene99685:CDS |
| TTATAAGGGTCGGTTTCCTT+TGG | 0.398606 | 5.3:-31545249 | MS.gene99685:CDS |
| GATTCTGGATACTTCACATA+TGG | 0.400793 | 5.3:-31545032 | MS.gene99685:CDS |
| TGAAAAGCAGAAATTGGTTA+TGG | 0.401153 | 5.3:-31545471 | MS.gene99685:CDS |
| AAGTTTGCTGTTATGAATCA+TGG | 0.406974 | 5.3:-31545164 | MS.gene99685:CDS |
| TTGCTTTGTGCCTTTGGTGC+AGG | 0.408431 | 5.3:+31544675 | None:intergenic |
| CCTTGTGGAAAATCTCTTGG+TGG | 0.417387 | 5.3:-31545854 | MS.gene99685:CDS |
| GGGAAGAAAGAGAAAGAGAT+TGG | 0.418968 | 5.3:-31545729 | MS.gene99685:CDS |
| TTCGGTTTCGGAGGTTGAGC+AGG | 0.435311 | 5.3:-31545321 | MS.gene99685:CDS |
| GATGCTAAGTCTTCAAAAGT+TGG | 0.438840 | 5.3:-31544960 | MS.gene99685:CDS |
| CAAAACCTTCATTCATCATC+AGG | 0.439438 | 5.3:+31544372 | None:intergenic |
| ATCATTTCCTCCAATAAAAT+GGG | 0.439536 | 5.3:+31544509 | None:intergenic |
| GATTTAGGGTCTAGTGGTAA+TGG | 0.442325 | 5.3:-31545707 | MS.gene99685:CDS |
| GCAGCATGAGCACCACCAGC+TGG | 0.444894 | 5.3:+31544465 | None:intergenic |
| TTCTGCAAAGAATGTGGAAA+AGG | 0.449593 | 5.3:-31545587 | MS.gene99685:CDS |
| TTTCCTTGTGGAAAATCTCT+TGG | 0.449803 | 5.3:-31545857 | MS.gene99685:CDS |
| CACCAAAGGCACAAAGCAAT+AGG | 0.453178 | 5.3:-31544671 | MS.gene99685:CDS |
| TTCGGAGGTTGAGCAGGAGC+AGG | 0.458621 | 5.3:-31545315 | MS.gene99685:CDS |
| TCTAGAGATTCTACTTATAA+GGG | 0.461296 | 5.3:-31545263 | MS.gene99685:CDS |
| TCAGTCTGATACCGAGGCTT+CGG | 0.472830 | 5.3:-31545444 | MS.gene99685:CDS |
| CTGAACAGTAGCAGCAGCAT+TGG | 0.476419 | 5.3:+31545619 | None:intergenic |
| AATAAGAAGTCAAGTACTAA+AGG | 0.485690 | 5.3:-31544630 | MS.gene99685:CDS |
| CCACACAGTGCTTTCAATGA+TGG | 0.493227 | 5.3:+31545560 | None:intergenic |
| CTTCGGTTCAGACTGATTCA+AGG | 0.498154 | 5.3:-31545427 | MS.gene99685:CDS |
| GCTATGTTTAAGTTTGATGA+GGG | 0.506285 | 5.3:-31545749 | MS.gene99685:CDS |
| TGTCACTCTGAGAAAGATAA+GGG | 0.513515 | 5.3:-31545527 | MS.gene99685:CDS |
| TTGTCACTCTGAGAAAGATA+AGG | 0.514322 | 5.3:-31545528 | MS.gene99685:CDS |
| ATGATTCATAACAGCAAACT+TGG | 0.515359 | 5.3:+31545166 | None:intergenic |
| TGCTGCTGCTACTGTTCAGA+TGG | 0.519726 | 5.3:-31545615 | MS.gene99685:CDS |
| CAAAGACGGGAAGATGAAAT+CGG | 0.522844 | 5.3:-31545084 | MS.gene99685:CDS |
| CAAAGCAATAGGAACATGAA+TGG | 0.522883 | 5.3:-31544660 | MS.gene99685:CDS |
| AGATTAAGATCAAATAAAGA+TGG | 0.528073 | 5.3:+31544402 | None:intergenic |
| AGACTGATTCAAGGAGATCA+AGG | 0.531367 | 5.3:-31545418 | MS.gene99685:CDS |
| GAGAAATTCTGCAAAGAATG+TGG | 0.532692 | 5.3:-31545593 | MS.gene99685:CDS |
| AGTTCAAGAATCTTAGCGGC+GGG | 0.534441 | 5.3:-31545388 | MS.gene99685:CDS |
| TCTAGTGGTAATGGTGATGA+TGG | 0.536602 | 5.3:-31545698 | MS.gene99685:CDS |
| AATCGGATTGAAAGTGTGTC+TGG | 0.538516 | 5.3:-31545500 | MS.gene99685:CDS |
| GAATCAGATGATTCAAGTGA+TGG | 0.538994 | 5.3:-31544996 | MS.gene99685:CDS |
| TGCTATGTTTAAGTTTGATG+AGG | 0.542036 | 5.3:-31545750 | MS.gene99685:CDS |
| GAGATTCTACTTATAAGGGT+CGG | 0.543765 | 5.3:-31545259 | MS.gene99685:CDS |
| AGAAGAAGTTGAACAAAGAC+GGG | 0.553022 | 5.3:-31545097 | MS.gene99685:CDS |
| CTTCATTCATCATCAGGAGC+AGG | 0.558382 | 5.3:+31544378 | None:intergenic |
| TTGTTCTTCTTCGGTTTCGG+AGG | 0.558551 | 5.3:-31545330 | MS.gene99685:CDS |
| ATCAGTCTGAACCGAAGCCT+CGG | 0.559850 | 5.3:+31545433 | None:intergenic |
| GAGAAGAAGTTGAACAAAGA+CGG | 0.560154 | 5.3:-31545098 | MS.gene99685:CDS |
| AGGAGCAGGAAGATGTTGCT+AGG | 0.560537 | 5.3:-31545301 | MS.gene99685:CDS |
| AGACACACTTTCAATCCGAT+TGG | 0.563334 | 5.3:+31545502 | None:intergenic |
| ACTCTTGTGATTAGACCAGC+TGG | 0.571253 | 5.3:-31544480 | MS.gene99685:CDS |
| TCAAGCAAGGTAATAAGCAG+AGG | 0.577439 | 5.3:-31544903 | MS.gene99685:CDS |
| CTGCTCCTGATGATGAATGA+AGG | 0.579633 | 5.3:-31544377 | None:intergenic |
| AGATTGGATTTAGGGTCTAG+TGG | 0.582545 | 5.3:-31545713 | MS.gene99685:CDS |
| ATGAAGTTCAAGAATCTTAG+CGG | 0.594742 | 5.3:-31545392 | MS.gene99685:CDS |
| GAAAGCACTGTGTGGTCACA+TGG | 0.599338 | 5.3:-31545552 | MS.gene99685:CDS |
| AGAAAGATAAGGGAGCCAAT+CGG | 0.599365 | 5.3:-31545517 | MS.gene99685:CDS |
| TGATTCTTATCCTGCACCAA+AGG | 0.602247 | 5.3:-31544685 | MS.gene99685:CDS |
| CAAGTCAGGACAAGCTTTAG+GGG | 0.607651 | 5.3:-31544544 | MS.gene99685:CDS |
| TCAGAAGACTCTGTCACCAA+AGG | 0.619365 | 5.3:+31545233 | None:intergenic |
| GGATAGTCAGTCTGATACCG+AGG | 0.628900 | 5.3:-31545450 | MS.gene99685:CDS |
| TCTTCGTCTTCGCTTCATTG+GGG | 0.631575 | 5.3:-31545356 | MS.gene99685:CDS |
| AAGTCAGGACAAGCTTTAGG+GGG | 0.631959 | 5.3:-31544543 | MS.gene99685:CDS |
| GCAAACTTGGTATCAACAGA+AGG | 0.632363 | 5.3:+31545179 | None:intergenic |
| AGAATCCCAAGAAAACAACT+AGG | 0.636642 | 5.3:-31545652 | MS.gene99685:CDS |
| AAGTTCAAGAATCTTAGCGG+CGG | 0.653501 | 5.3:-31545389 | MS.gene99685:CDS |
| CCATCATTGAAAGCACTGTG+TGG | 0.660357 | 5.3:-31545560 | MS.gene99685:CDS |
| GTTCAAGAATCTTAGCGGCG+GGG | 0.682533 | 5.3:-31545387 | MS.gene99685:CDS |
| CTTGTGATTAGACCAGCTGG+TGG | 0.684788 | 5.3:-31544477 | MS.gene99685:CDS |
| TGTTTGAAAAGGTTTCCTTG+TGG | 0.689303 | 5.3:-31545869 | MS.gene99685:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTAAGATCAAATAAAGA+TGG | + | chr5.3:31545874-31545893 | None:intergenic | 20.0% |
| !! | TCTATCAAGAAAACAAAAAA+TGG | - | chr5.3:31545469-31545488 | MS.gene99685:CDS | 20.0% |
| !! | TTGAAAATCTTGTTACAAAT+TGG | + | chr5.3:31545712-31545731 | None:intergenic | 20.0% |
| !!! | TTTGTAAGTTTTGTTTGAAA+AGG | - | chr5.3:31544393-31544412 | MS.gene99685:CDS | 20.0% |
| ! | AATAAGAAGTCAAGTACTAA+AGG | - | chr5.3:31545643-31545662 | MS.gene99685:CDS | 25.0% |
| ! | ATCATTTCCTCCAATAAAAT+GGG | + | chr5.3:31545767-31545786 | None:intergenic | 25.0% |
| ! | TCTAGAGATTCTACTTATAA+GGG | - | chr5.3:31545010-31545029 | MS.gene99685:CDS | 25.0% |
| !! | TGAATTCAAGAAAGTAGTTT+TGG | - | chr5.3:31545411-31545430 | MS.gene99685:CDS | 25.0% |
| !!! | TCATCTGATTCTACTTTTTT+AGG | + | chr5.3:31545268-31545287 | None:intergenic | 25.0% |
| AAATTGTTCTTCTTCGGTTT+CGG | - | chr5.3:31544940-31544959 | MS.gene99685:CDS | 30.0% | |
| AAGAGAAAGAGATTGGATTT+AGG | - | chr5.3:31544551-31544570 | MS.gene99685:CDS | 30.0% | |
| AGAGAAAGAGATTGGATTTA+GGG | - | chr5.3:31544552-31544571 | MS.gene99685:CDS | 30.0% | |
| ATGAAGTTCAAGAATCTTAG+CGG | - | chr5.3:31544881-31544900 | MS.gene99685:CDS | 30.0% | |
| ATGATTCATAACAGCAAACT+TGG | + | chr5.3:31545110-31545129 | None:intergenic | 30.0% | |
| ATTGTTGCTGCTAAAAACAA+TGG | - | chr5.3:31545139-31545158 | MS.gene99685:CDS | 30.0% | |
| CATCATTTCCTCCAATAAAA+TGG | + | chr5.3:31545768-31545787 | None:intergenic | 30.0% | |
| GTCTAGAGATTCTACTTATA+AGG | - | chr5.3:31545009-31545028 | MS.gene99685:CDS | 30.0% | |
| GTTTCTGATAATTCTGATTC+TGG | - | chr5.3:31545226-31545245 | MS.gene99685:CDS | 30.0% | |
| TGAAAAGCAGAAATTGGTTA+TGG | - | chr5.3:31544802-31544821 | MS.gene99685:CDS | 30.0% | |
| ! | GATGATGGTAACCTTATTTA+TGG | - | chr5.3:31544590-31544609 | MS.gene99685:CDS | 30.0% |
| ! | GCTATGTTTAAGTTTGATGA+GGG | - | chr5.3:31544524-31544543 | MS.gene99685:CDS | 30.0% |
| ! | TGCTATGTTTAAGTTTGATG+AGG | - | chr5.3:31544523-31544542 | MS.gene99685:CDS | 30.0% |
| !! | AAGTTTGCTGTTATGAATCA+TGG | - | chr5.3:31545109-31545128 | MS.gene99685:CDS | 30.0% |
| !! | ACAAACCTAGTTGTTTTCTT+GGG | + | chr5.3:31544629-31544648 | None:intergenic | 30.0% |
| !! | TAACCAATTTCTGCTTTTCA+CGG | + | chr5.3:31544802-31544821 | None:intergenic | 30.0% |
| !! | TCTCTCTAAGACCATAAATA+AGG | + | chr5.3:31544604-31544623 | None:intergenic | 30.0% |
| !!! | AAAAACAATGGTTTTGAGCT+TGG | - | chr5.3:31545151-31545170 | MS.gene99685:CDS | 30.0% |
| !!! | AAGTAGTTTTGGATGATTCA+AGG | - | chr5.3:31545422-31545441 | MS.gene99685:CDS | 30.0% |
| !!! | ATTCAAGTGATGGTTTTTTC+AGG | - | chr5.3:31545287-31545306 | MS.gene99685:CDS | 30.0% |
| !!! | TGTAACAAGATTTTCAAGTC+AGG | - | chr5.3:31545715-31545734 | MS.gene99685:CDS | 30.0% |
| !!! | TTTTCTAGTTTCGAGAATCA+TGG | - | chr5.3:31545340-31545359 | MS.gene99685:CDS | 30.0% |
| AAGATGAAATCGGTCGAAAT+TGG | - | chr5.3:31545199-31545218 | MS.gene99685:CDS | 35.0% | |
| AGAAGAAGTTGAACAAAGAC+GGG | - | chr5.3:31545176-31545195 | MS.gene99685:CDS | 35.0% | |
| AGAATCCCAAGAAAACAACT+AGG | - | chr5.3:31544621-31544640 | MS.gene99685:CDS | 35.0% | |
| CAAAGCAATAGGAACATGAA+TGG | - | chr5.3:31545613-31545632 | MS.gene99685:CDS | 35.0% | |
| GAATCAGATGATTCAAGTGA+TGG | - | chr5.3:31545277-31545296 | MS.gene99685:CDS | 35.0% | |
| GAGAAATTCTGCAAAGAATG+TGG | - | chr5.3:31544680-31544699 | MS.gene99685:CDS | 35.0% | |
| GAGAAGAAGTTGAACAAAGA+CGG | - | chr5.3:31545175-31545194 | MS.gene99685:CDS | 35.0% | |
| GAGATTCTACTTATAAGGGT+CGG | - | chr5.3:31545014-31545033 | MS.gene99685:CDS | 35.0% | |
| GATGCTAAGTCTTCAAAAGT+TGG | - | chr5.3:31545313-31545332 | MS.gene99685:CDS | 35.0% | |
| GATTCTGGATACTTCACATA+TGG | - | chr5.3:31545241-31545260 | MS.gene99685:CDS | 35.0% | |
| TGTTTGAAAAGGTTTCCTTG+TGG | - | chr5.3:31544404-31544423 | MS.gene99685:CDS | 35.0% | |
| TTCTGCAAAGAATGTGGAAA+AGG | - | chr5.3:31544686-31544705 | MS.gene99685:CDS | 35.0% | |
| TTGGGGAAATTGTTCTTCTT+CGG | - | chr5.3:31544934-31544953 | MS.gene99685:CDS | 35.0% | |
| TTTCCTTGTGGAAAATCTCT+TGG | - | chr5.3:31544416-31544435 | MS.gene99685:CDS | 35.0% | |
| ! | AAAAGGTCCCATTTTATTGG+AGG | - | chr5.3:31545757-31545776 | MS.gene99685:CDS | 35.0% |
| ! | CACAAAAGGTCCCATTTTAT+TGG | - | chr5.3:31545754-31545773 | MS.gene99685:CDS | 35.0% |
| ! | TGTCACTCTGAGAAAGATAA+GGG | - | chr5.3:31544746-31544765 | MS.gene99685:CDS | 35.0% |
| ! | TTGTCACTCTGAGAAAGATA+AGG | - | chr5.3:31544745-31544764 | MS.gene99685:CDS | 35.0% |
| ! | TTTTGGATGATTCAAGGAAG+AGG | - | chr5.3:31545428-31545447 | MS.gene99685:CDS | 35.0% |
| !! | CACAAACCTAGTTGTTTTCT+TGG | + | chr5.3:31544630-31544649 | None:intergenic | 35.0% |
| !!! | TCATGGTTTTGAATCAAGCA+AGG | - | chr5.3:31545357-31545376 | MS.gene99685:CDS | 35.0% |
| AAGTTCAAGAATCTTAGCGG+CGG | - | chr5.3:31544884-31544903 | MS.gene99685:CDS | 40.0% | |
| AGAAAGATAAGGGAGCCAAT+CGG | - | chr5.3:31544756-31544775 | MS.gene99685:CDS | 40.0% | |
| AGACACACTTTCAATCCGAT+TGG | + | chr5.3:31544774-31544793 | None:intergenic | 40.0% | |
| CAAAGACGGGAAGATGAAAT+CGG | - | chr5.3:31545189-31545208 | MS.gene99685:CDS | 40.0% | |
| GCAAACTTGGTATCAACAGA+AGG | + | chr5.3:31545097-31545116 | None:intergenic | 40.0% | |
| GGGAAGAAAGAGAAAGAGAT+TGG | - | chr5.3:31544544-31544563 | MS.gene99685:CDS | 40.0% | |
| TCAAGCAAGGTAATAAGCAG+AGG | - | chr5.3:31545370-31545389 | MS.gene99685:CDS | 40.0% | |
| TCAAGTCAGGACAAGCTTTA+GGG | - | chr5.3:31545728-31545747 | MS.gene99685:CDS | 40.0% | |
| TGATTCTTATCCTGCACCAA+AGG | - | chr5.3:31545588-31545607 | MS.gene99685:CDS | 40.0% | |
| TGTCCGTGAAAAGCAGAAAT+TGG | - | chr5.3:31544796-31544815 | MS.gene99685:CDS | 40.0% | |
| TTCAAGTCAGGACAAGCTTT+AGG | - | chr5.3:31545727-31545746 | MS.gene99685:CDS | 40.0% | |
| TTCCTATTGCTTTGTGCCTT+TGG | + | chr5.3:31545607-31545626 | None:intergenic | 40.0% | |
| ! | AATCGGATTGAAAGTGTGTC+TGG | - | chr5.3:31544773-31544792 | MS.gene99685:CDS | 40.0% |
| ! | AATCTCTTGGTGGTCACATT+AGG | - | chr5.3:31544429-31544448 | MS.gene99685:CDS | 40.0% |
| ! | AGACTGATTCAAGGAGATCA+AGG | - | chr5.3:31544855-31544874 | MS.gene99685:CDS | 40.0% |
| ! | AGATTGGATTTAGGGTCTAG+TGG | - | chr5.3:31544560-31544579 | MS.gene99685:CDS | 40.0% |
| ! | GATTTAGGGTCTAGTGGTAA+TGG | - | chr5.3:31544566-31544585 | MS.gene99685:CDS | 40.0% |
| ! | TTATAAGGGTCGGTTTCCTT+TGG | - | chr5.3:31545024-31545043 | MS.gene99685:CDS | 40.0% |
| !! | TCTAGTGGTAATGGTGATGA+TGG | - | chr5.3:31544575-31544594 | MS.gene99685:CDS | 40.0% |
| ACTCTTGTGATTAGACCAGC+TGG | - | chr5.3:31545793-31545812 | MS.gene99685:CDS | 45.0% | |
| AGTCTTCGTCTTCGCTTCAT+TGG | - | chr5.3:31544915-31544934 | MS.gene99685:CDS | 45.0% | |
| AGTTCAAGAATCTTAGCGGC+GGG | - | chr5.3:31544885-31544904 | MS.gene99685:CDS | 45.0% | |
| CCACACAGTGCTTTCAATGA+TGG | + | chr5.3:31544716-31544735 | None:intergenic | 45.0% | |
| CCTTGTGGAAAATCTCTTGG+TGG | - | chr5.3:31544419-31544438 | MS.gene99685:CDS | 45.0% | |
| GTCTTCGTCTTCGCTTCATT+GGG | - | chr5.3:31544916-31544935 | MS.gene99685:CDS | 45.0% | |
| TCAGAAGACTCTGTCACCAA+AGG | + | chr5.3:31545043-31545062 | None:intergenic | 45.0% | |
| TCTTCGTCTTCGCTTCATTG+GGG | - | chr5.3:31544917-31544936 | MS.gene99685:CDS | 45.0% | |
| TTGTTCTTCTTCGGTTTCGG+AGG | - | chr5.3:31544943-31544962 | MS.gene99685:CDS | 45.0% | |
| ! | CAAGTCAGGACAAGCTTTAG+GGG | - | chr5.3:31545729-31545748 | MS.gene99685:CDS | 45.0% |
| ! | CACCAAAGGCACAAAGCAAT+AGG | - | chr5.3:31545602-31545621 | MS.gene99685:CDS | 45.0% |
| ! | CCACCAAGAGATTTTCCACA+AGG | + | chr5.3:31544422-31544441 | None:intergenic | 45.0% |
| ! | CTTCGGTTCAGACTGATTCA+AGG | - | chr5.3:31544846-31544865 | MS.gene99685:CDS | 45.0% |
| !! | AAGCTTTAGGGGGTCACAAA+AGG | - | chr5.3:31545740-31545759 | MS.gene99685:CDS | 45.0% |
| !! | AAGTCAGGACAAGCTTTAGG+GGG | - | chr5.3:31545730-31545749 | MS.gene99685:CDS | 45.0% |
| !! | CCATCATTGAAAGCACTGTG+TGG | - | chr5.3:31544713-31544732 | MS.gene99685:CDS | 45.0% |
| AGGAGCAGGAAGATGTTGCT+AGG | - | chr5.3:31544972-31544991 | MS.gene99685:CDS | 50.0% | |
| ATCAGTCTGAACCGAAGCCT+CGG | + | chr5.3:31544843-31544862 | None:intergenic | 50.0% | |
| CTGAACAGTAGCAGCAGCAT+TGG | + | chr5.3:31544657-31544676 | None:intergenic | 50.0% | |
| CTTGTGATTAGACCAGCTGG+TGG | - | chr5.3:31545796-31545815 | MS.gene99685:CDS | 50.0% | |
| GGATAGTCAGTCTGATACCG+AGG | - | chr5.3:31544823-31544842 | MS.gene99685:CDS | 50.0% | |
| GTTCAAGAATCTTAGCGGCG+GGG | - | chr5.3:31544886-31544905 | MS.gene99685:CDS | 50.0% | |
| TCAGTCTGATACCGAGGCTT+CGG | - | chr5.3:31544829-31544848 | MS.gene99685:CDS | 50.0% | |
| TGCTGCTGCTACTGTTCAGA+TGG | - | chr5.3:31544658-31544677 | MS.gene99685:CDS | 50.0% | |
| ! | TTGCTTTGTGCCTTTGGTGC+AGG | + | chr5.3:31545601-31545620 | None:intergenic | 50.0% |
| !! | GAAAGCACTGTGTGGTCACA+TGG | - | chr5.3:31544721-31544740 | MS.gene99685:CDS | 50.0% |
| TTCGGTTTCGGAGGTTGAGC+AGG | - | chr5.3:31544952-31544971 | MS.gene99685:CDS | 55.0% | |
| TTCGGAGGTTGAGCAGGAGC+AGG | - | chr5.3:31544958-31544977 | MS.gene99685:CDS | 60.0% | |
| GCAGCATGAGCACCACCAGC+TGG | + | chr5.3:31545811-31545830 | None:intergenic | 65.0% | |
| GCAGCAGCAGCAGCAGCAGC+AGG | + | chr5.3:31545847-31545866 | None:intergenic | 70.0% | |
| GCAGCAGCAGCAGCAGCAGG+AGG | + | chr5.3:31545844-31545863 | None:intergenic | 70.0% | |
| ! | GCAGCAGCAGCAGGAGGTGC+AGG | + | chr5.3:31545838-31545857 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 31544380 | 31545915 | 31544380 | ID=MS.gene99685 |
| chr5.3 | mRNA | 31544380 | 31545915 | 31544380 | ID=MS.gene99685.t1;Parent=MS.gene99685 |
| chr5.3 | exon | 31544380 | 31545915 | 31544380 | ID=MS.gene99685.t1.exon1;Parent=MS.gene99685.t1 |
| chr5.3 | CDS | 31544380 | 31545915 | 31544380 | ID=cds.MS.gene99685.t1;Parent=MS.gene99685.t1 |
| Gene Sequence |
| Protein sequence |
