AlfalfaGEDB | MS.gene99749

M. sativa cultivar XinJiangDaYe / MS.gene99749

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99749.t1	XP_013464129.1	90.5	411	39	0	38	448	22	432	6.90E-215	756.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99749.t1	Q9C6A1	52.2	410	195	1	38	447	36	444	1.4e-120	434.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99749.t1	A0A072V7X6	90.5	411	39	0	38	448	22	432	5.0e-215	756.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene99749.t1	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99749.t1	MTR_2g061450	88.736	435	46	2	14	448	1	432	0.0	775
MS.gene99749.t1	MTR_2g060620	92.523	107	6	1	318	424	61	165	1.01e-62	201

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99749.t1	AT1G74120	49.548	442	219	2	6	447	7	444	1.43e-149	433
MS.gene99749.t1	AT5G54180	28.829	222	152	5	153	370	253	472	1.52e-15	79.3
MS.gene99749.t1	AT1G62010	27.083	192	121	5	211	399	213	388	7.73e-12	67.4
MS.gene99749.t1	AT5G23930	22.047	381	252	12	45	404	89	445	9.80e-11	63.9

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Find 120 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGTAAGCAATCAACCT+TGG	0.613186	2.1:-34731895	None:intergenic
AAATATCAAGTGGGTTTAAA+TGG	0.226943	2.1:-34731387	None:intergenic
AAATTCACACCTAAGTATGA+AGG	0.579741	2.1:-34731991	None:intergenic
AAATTCGGAAGAGAAGAGGA+AGG	0.533269	2.1:-34731124	None:intergenic
AACAGCTTCCAAAGTCCAGC+TGG	0.524566	2.1:-34732210	None:intergenic
AACCCCAATTTCTACTTAAT+TGG	0.102106	2.1:+34731278	MS.gene99749:CDS
AAGGTTGATTGCTTACGGTT+TGG	0.397737	2.1:+34731897	MS.gene99749:CDS
AAGTGGTTCTTACAAGAATA+AGG	0.352405	2.1:-34731000	None:intergenic
AATAAATTGGCTATCATCAG+CGG	0.542731	2.1:-34731346	None:intergenic
AATCTTGAATAAGGGAAATT+AGG	0.210110	2.1:-34731240	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCACACCTAAGTATGA+AGG	-	chr2.1:34731994-34732013	None:intergenic	30.0%
AACCCCAATTTCTACTTAAT+TGG	+	chr2.1:34731278-34731297	MS.gene99749:CDS	30.0%
AAGTGGTTCTTACAAGAATA+AGG	-	chr2.1:34731003-34731022	None:intergenic	30.0%
AATAAATTGGCTATCATCAG+CGG	-	chr2.1:34731349-34731368	None:intergenic	30.0%
ACCCCAATTTCTACTTAATT+GGG	+	chr2.1:34731279-34731298	MS.gene99749:CDS	30.0%
ACTTTATGGGAAATATCAAG+TGG	-	chr2.1:34731400-34731419	None:intergenic	30.0%
CCCTAAAAATCTCAACTTTA+TGG	-	chr2.1:34731414-34731433	None:intergenic	30.0%
CTTTATGGGAAATATCAAGT+GGG	-	chr2.1:34731399-34731418	None:intergenic	30.0%
TACTCAATCACATTGTATCT+AGG	-	chr2.1:34732033-34732052	None:intergenic	30.0%
TCCCAATTAAGTAGAAATTG+GGG	-	chr2.1:34731283-34731302	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	34730959	34732305	34730959	ID=MS.gene99749
chr2.1	mRNA	34730959	34732305	34730959	ID=MS.gene99749.t1;Parent=MS.gene99749
chr2.1	exon	34730959	34732305	34730959	ID=MS.gene99749.t1.exon1;Parent=MS.gene99749.t1
chr2.1	CDS	34730959	34732305	34730959	ID=cds.MS.gene99749.t1;Parent=MS.gene99749.t1

Gene Sequence

>MS.gene99749

ATGGGGTTGGGTTCCACCATAGTCAGAAAAAGAAACAACGTCCTTATTCTTGTAAGAACCACTTCTTCAACTAATAACAACTACTTCTCCACCATTTCTAATCCACCTACATCTCATTACAGAAAACAAATCGCACTCGCTAATCTCTTCCAATCCTTCGGTTTCCCTTCCTCTTCTCTTCCGAATTTCCTCTCCAAAAACCACTTCCTCTTCAATACCGATCCATCCCACCTTCGTCAATCCCTTACCATCCTCTTTTCCTTCAAAATTCCACAGAAAAACCTAATTTCCCTTATTCAAGATTGCCCTTCTGTGTTGGAACCCCAATTTCTACTTAATTGGGAATTGGGTTTTCCAAAATTCATATCCAAGCTTTCTAATCCTTCCCCGCTGATGATAGCCAATTTATTGCGGTGTTCTACAACTTTCCATTTAAACCCACTTGATATTTCCCATAAAGTTGAGATTTTTAGGGGTTTAGGGTTTTCTGATGATGTTGTGATTAGGGTTTTGGAGGAATTTCCCACTGCAGTTGTAATGGGGAAAAGTCAAATTGTTGGTGTCGTTAATTTTCTTGTGGAATTTGGGGTTCCTAAGGATGAAATTGATAGGGTTGTTAGATTGTTTCCTAGGGTTTTGGGATTTGGAATTGAGGATAGGTTGAAGCTGTTGATTCATGAGTTGAGGAGTTTGGGGTTTTCCAGCCAAGAGGTCAGGGCGGAGGTTGTTAGGGATCCAAGGGTTTTGGGAATGGAGATTGGGGAATTTTCACGGTATTTGAAGTTGTTGCAGAGTTTGAAATGCAGGGAGGCAATTAAAGAGAGGATTTTTGGAGAGGGTTTGGTTAGGGCTTGTTTTGAAGTGAAGTTGAGAGTGGATTGTTTGTGTGGTCACGGTTTGATCCGTAGGGATGCTTTGAAGGTGTTGTGGAAGGAACCAAGGTTGATTGCTTACGGTTTGGAGGATATTGAAAAGAAGATTGAGTTTTTAATCCAAAGGATGAAATATGGTGTTGATTGTTTGCATGAAGTTCCTTCATACTTAGGTGTGAATTTTGAAAAACAGATTGTTCCTAGATACAATGTGATTGAGTATTTGAAAGGAAAAGGTGCAATTGGGTTTGAAGTTGGATTGAAGGACATCATCAAACCAACTAGGCTTAGATTTTACAATCTTTACGTTAAGCCTTATCCAGAATGTGAAAAAATATATGGGAGATTTTCGGGTAAGGTCGAAGTTAAAAGTAAGCATCCAGCTGGACTTTGGAAGCTGTTCCAACCACAGAAGTTTCCTCAAACCGGTCAAGATGTGAAGAACATGAAGGCTTTCATGGATTCAATGCTGTAG

Protein sequence

>MS.gene99749.t1

MGLGSTIVRKRNNVLILVRTTSSTNNNYFSTISNPPTSHYRKQIALANLFQSFGFPSSSLPNFLSKNHFLFNTDPSHLRQSLTILFSFKIPQKNLISLIQDCPSVLEPQFLLNWELGFPKFISKLSNPSPLMIANLLRCSTTFHLNPLDISHKVEIFRGLGFSDDVVIRVLEEFPTAVVMGKSQIVGVVNFLVEFGVPKDEIDRVVRLFPRVLGFGIEDRLKLLIHELRSLGFSSQEVRAEVVRDPRVLGMEIGEFSRYLKLLQSLKCREAIKERIFGEGLVRACFEVKLRVDCLCGHGLIRRDALKVLWKEPRLIAYGLEDIEKKIEFLIQRMKYGVDCLHEVPSYLGVNFEKQIVPRYNVIEYLKGKGAIGFEVGLKDIIKPTRLRFYNLYVKPYPECEKIYGRFSGKVEVKSKHPAGLWKLFQPQKFPQTGQDVKNMKAFMDSML