AlfalfaGEDB | MS.gene99783

M. sativa cultivar XinJiangDaYe / MS.gene99783

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99783.t1	XP_013464514.1	82.8	499	54	4	108	576	292	788	2.70E-211	745

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99783.t1	Q8RWZ5	58.3	506	144	7	138	576	315	820	4.1e-144	513.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99783.t1	A0A072V924	82.8	499	54	4	108	576	292	788	1.9e-211	745.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99783.t1	MTR_2g073250	82.164	499	57	4	108	576	292	788	0.0	798
MS.gene99783.t1	MTR_2g080080	81.497	481	55	6	128	576	308	786	0.0	776
MS.gene99783.t1	MTR_2g080100	74.900	502	54	8	108	576	293	755	0.0	718
MS.gene99783.t1	MTR_3g107070	71.820	511	80	11	127	576	290	797	0.0	701
MS.gene99783.t1	MTR_2g080090	71.429	483	68	7	108	559	292	735	0.0	622
MS.gene99783.t1	MTR_1g012550	62.741	518	119	14	127	576	313	824	0.0	583
MS.gene99783.t1	MTR_2g103810	50.098	511	192	9	125	576	308	814	9.47e-157	469
MS.gene99783.t1	MTR_6g043790	38.627	510	233	15	128	570	299	795	6.58e-93	303
MS.gene99783.t1	MTR_6g043510	40.625	448	197	11	185	570	350	790	3.36e-91	298
MS.gene99783.t1	MTR_3g072800	39.085	481	206	14	155	556	354	826	3.44e-90	297

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99783.t1	AT4G32300	57.312	506	149	10	138	576	315	820	0.0	536
MS.gene99783.t1	AT5G35370	36.220	508	236	15	128	552	310	812	2.48e-89	294
MS.gene99783.t1	AT5G24080	38.785	428	200	11	178	553	268	685	3.59e-89	291
MS.gene99783.t1	AT5G24080	38.785	428	200	11	178	553	268	685	3.59e-89	291
MS.gene99783.t1	AT2G19130	40.385	416	202	6	178	553	367	776	5.50e-89	293
MS.gene99783.t1	AT5G24080	38.785	428	200	11	178	553	395	812	3.09e-88	291
MS.gene99783.t1	AT1G34300	39.374	447	216	12	183	576	350	794	9.75e-88	289
MS.gene99783.t1	AT5G20050	40.633	379	172	8	230	555	22	400	4.25e-80	259
MS.gene99783.t1	AT4G00340	39.686	446	213	14	147	545	325	761	3.29e-78	263
MS.gene99783.t1	AT4G00340	38.688	442	202	13	147	545	325	740	1.28e-75	256

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Find 96 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCGATGTATACATTAA+TGG	0.286382	2.3:-17604783	MS.gene99783:CDS
AAAAGTTGTTCAAATGTTAG+AGG	0.428209	2.3:-17604532	MS.gene99783:CDS
AAAGCGATGTATACATTAAT+GGG	0.383264	2.3:-17604782	MS.gene99783:CDS
AAAGTTGTTCAAATGTTAGA+GGG	0.571298	2.3:-17604531	MS.gene99783:CDS
AAATCCGATGATGCTGATTC+TGG	0.344863	2.3:-17605584	MS.gene99783:CDS
AACAGCTCCCTGAACTTGTA+TGG	0.447243	2.3:+17605636	None:intergenic
AAGCTAGAAGGTATTGGTCA+AGG	0.563596	2.3:-17605239	MS.gene99783:CDS
AAGCTAGGTCAAGGAGGTTT+TGG	0.274669	2.3:-17605311	MS.gene99783:CDS
AAGGTCTCAAGTCATGGAAG+TGG	0.560053	2.3:-17605545	MS.gene99783:CDS
AAGTCTTCAAACTTGCTAGC+TGG	0.527256	2.3:+17606231	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTGATTGCTGAAAAAC+AGG	+	chr2.3:17604976-17604995	None:intergenic	30.0%
AAGAAACTGAACTAGAAACT+AGG	+	chr2.3:17604948-17604967	None:intergenic	30.0%
ACAAGGTTTAGTATAGCATT+AGG	-	chr2.3:17605999-17606018	MS.gene99783:intron	30.0%
AGATGATGAGAATGATGATA+GGG	-	chr2.3:17606409-17606428	MS.gene99783:CDS	30.0%
ATACACGGCTAATAATTCAT+TGG	-	chr2.3:17605926-17605945	MS.gene99783:intron	30.0%
ATCATCTTAAAAGCAAAACG+AGG	+	chr2.3:17606347-17606366	None:intergenic	30.0%
CAACTTCAAGATCTTTATAG+CGG	+	chr2.3:17605680-17605699	None:intergenic	30.0%
CTCTTAGTGTTGTAAAAACA+TGG	+	chr2.3:17606175-17606194	None:intergenic	30.0%
CTTTAAGCCTTACCAAATTA+AGG	+	chr2.3:17605866-17605885	None:intergenic	30.0%
GCCAAATCAGTATTCAAATA+GGG	+	chr2.3:17605324-17605343	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	17604431	17606622	17604431	ID=MS.gene99783
chr2.3	mRNA	17604431	17606622	17604431	ID=MS.gene99783.t1;Parent=MS.gene99783
chr2.3	exon	17606243	17606622	17606243	ID=MS.gene99783.t1.exon1;Parent=MS.gene99783.t1
chr2.3	CDS	17606243	17606622	17606243	ID=cds.MS.gene99783.t1;Parent=MS.gene99783.t1
chr2.3	exon	17605217	17605871	17605217	ID=MS.gene99783.t1.exon2;Parent=MS.gene99783.t1
chr2.3	CDS	17605217	17605871	17605217	ID=cds.MS.gene99783.t1;Parent=MS.gene99783.t1
chr2.3	exon	17604431	17605129	17604431	ID=MS.gene99783.t1.exon3;Parent=MS.gene99783.t1
chr2.3	CDS	17604431	17605129	17604431	ID=cds.MS.gene99783.t1;Parent=MS.gene99783.t1

Gene Sequence

>MS.gene99783

ATGAAAAGTACCTCAGGGTATTGTTTTTGCTTTGGATCGGGAGTTTTTTCATGGAGTTCAAAAAAACAAGAAACAGTGGCTCAATCAACTGCTGAAGCGGAATTTGTTGCTGCTACTTTTGCTGTAAATCAAGCTCTATGGTTGAGGAAGATATTGAGTGATCTTCATCTTGAGCAGAAAGAAGACACTAAGATCTTTGTTGATAATCAAGCTGCAATAGCTATTTCCCATAATCCAGTTTTTCATGGAAAAACTAAACATTTCAACATCAAGCTGTTTTTTGTGAGGGAGGTGCAGAAGGATAATGTTGTAGCTCTTGTTTACTGCAAAACTGAAGAGCAGATAGCAGACATTTTTACTAAACCTTTACCAGCTAGCAAGTTTGAAGACTTGAGAACTAAACTTGGTGTCTGCAGTATCTAAAGCAAGGAGGAGTGTTAGCTATTGTGTTTAGAACTGCTGCCACGTCTGCAGAGTTTATTTTAATTCTGTTTTGAATATTTTAAATATGTTTCCTAGTTTCTAGTTCAGTTTCTTTTCCTCCTGTTTTTCAGCAATCAGTTTTTTTTCTAGTATTCCATCGTGGCCTAACTTATAGGAACATGATATCAGTGGGCAGTTATTTTCTATTCTGTACTTTTCTATTTGTACGTTTGAATTGAATAAAAGTTGTACTCTTCTTCCACTTGTTCTAGCAACTACCTTTAATCTTTTCCTCTGCAACTTTACAAAATAACAACAATAACCGTAGGTGCAGCTGTCCTTATGTTCTTGTTCCTAGTTGTAAACCAGGTTTTGTCTCGCCTTGTGATGATGATAAATCAGAAAAGTCTATTGAATTTGTGAAAGCTGATGATGGACTTGGTTACTTTGCACTTGATTTTCTTCATCCCTATTTGAATACTGATTTGGCCGGTTGTCAAACATCTTGTCGTGGAAATTGCTCTTGTCTTGCAATGTTCTTCCATACAAGTTCAGGGAGCTGTTTCTTGTTGGACAGTGTTGGAAGTTTTCAGAAATCCGATGATGCTGATTCTGGTTATGTTTCTTACATTAAGGTCTCAAGTCATGGAAGTGGAAGTAGAAATAAGCACATCATAATTGTTGCGGTCGTCGTTGTCATATTAACTTTGCTTGTTCTTCTCTTTGTGGTGATTCTATATTGCAGGAAAAAGCAAAAGTTACCTGCAGAGAATTCTGAAGAAGACAATTTCTTGGAGAATTTAACCGGCATGCCAATCCGTTTCCGCTATAAAGATCTTGAAGTTGCAACTAATAACTTCTCTGTGAAGCTAGGTCAAGGAGGTTTTGGATTAGTTTATAAAGGAGTTCTACCTGATGGGACTCAATTAGCTGTGAAGAAGCTAGAAGGTATTGGTCAAGGGAAGAAAGAGTTCCGAGCTGAAGTTAGCATCATTGGTAGCATTCACCACCTTAATTTGGTAAGGCTTAAAGGATTTTGTGCAGATGGGACTCATAGGCTTTTAGTTTAGGAATACACGGCTAATAATTCATTGGATAAATGGATATTCAAGAAGAAAAAAAGTGAATTTGTTTTGGATTGGGATACAAGGTTTAGTATAGCATTAGGAACAGCAAAAGGGCTAGCTTATTTGCATCAAGAGTGTGACTCAAAGATTGTTCATTGTGACATCAAACCTGAAAATGTACTTCTTGATGATCATTTCATTGCCAAAGTTTCAGATTTTGGTTTAACCAAGCTTATGAATAGAGAACAAAGCCATGTTTTTACAACACTAAGAGGAACCCGTGGCTACCTTGCCCCTGAGTGGATAACAAACTATGCTATATCAGAGAAAAGCGATGTATACATTAATGGGATGGTGTTGCTAGAGATAATTGGGGGAAGGAAGAATTATGATCCTAATGAGACTTCGGAGAAATTGAATTTCCCTCGTTTTGCTTTTAAGATGATGGAAGGTAAAATGAGAGATATCATTGATTCAGAGTTGAAAATAGATGATGAGAATGATGATAGGGTTCATTGTGCTATAAGTGTTGCATTGTGGTGTATACAGGAAGACATGTCTATGAGACCTTCCATGACAAAAGTTGTTCAAATGTTAGAGGGTCTTTGTACTGTTCATAAACCACCAAAGTCCTCTAATGAAGGAGACCCCTCCTCTTCTGATGCTTATCTATCAGCAGTTTGTCTTTCAGGCCCAATATAG

Protein sequence

>MS.gene99783.t1

MKSTSGYCFCFGSGVFSWSSKKQETVAQSTAEAEFVAATFAVNQALWLRKILSDLHLEQKEDTKIFVDNQAAIAISHNPVFHGKTKHFNIKLFFVREVQKDNVVALVYCKTEEQIADIFTKPLPASKCSCPYVLVPSCKPGFVSPCDDDKSEKSIEFVKADDGLGYFALDFLHPYLNTDLAGCQTSCRGNCSCLAMFFHTSSGSCFLLDSVGSFQKSDDADSGYVSYIKVSSHGSGSRNKHIIIVAVVVVILTLLVLLFVVILYCRKKQKLPAENSEEDNFLENLTGMPIRFRYKDLEVATNNFSVKLGQGGFGLVYKGVLPDGTQLAVKKLEGIGQGKKEFRAEEYTANNSLDKWIFKKKKSEFVLDWDTRFSIALGTAKGLAYLHQECDSKIVHCDIKPENVLLDDHFIAKVSDFGLTKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYINGMVLLEIIGGRKNYDPNETSEKLNFPRFAFKMMEGKMRDIIDSELKIDDENDDRVHCAISVALWCIQEDMSMRPSMTKVVQMLEGLCTVHKPPKSSNEGDPSSSDAYLSAVCLSGPI