AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99829

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99829.t1 MTR_2g436400 71.348 178 42 3 24 200 198 367 1.10e-79 243
MS.gene99829.t1 MTR_2g437020 50.420 238 53 2 2 174 99 336 2.65e-69 216
MS.gene99829.t1 MTR_2g437030 53.247 231 45 2 2 169 186 416 1.50e-68 217
MS.gene99829.t1 MTR_2g437060 66.471 170 49 2 5 174 189 350 4.77e-68 214
MS.gene99829.t1 MTR_2g437080 52.814 231 46 3 2 169 100 330 1.84e-67 212
MS.gene99829.t1 MTR_2g436440 45.802 262 78 3 2 200 106 366 1.48e-64 204
MS.gene99829.t1 MTR_2g437040 49.153 236 57 2 2 174 100 335 2.55e-64 204
MS.gene99829.t1 MTR_2g437940 44.118 238 92 4 2 200 109 344 1.17e-54 179
MS.gene99829.t1 MTR_2g437090 57.333 150 61 2 52 200 1 148 2.93e-52 166
MS.gene99829.t1 MTR_2g437200 51.807 166 74 1 9 174 204 363 3.83e-52 172
MS.gene99829.t1 MTR_2g076320 40.167 239 77 3 2 174 110 348 5.14e-51 170
MS.gene99829.t1 MTR_2g437160 50.602 166 72 2 19 174 104 269 5.31e-50 165
MS.gene99829.t1 MTR_2g437150 56.081 148 62 2 41 185 220 367 1.51e-49 166
MS.gene99829.t1 MTR_2g437960 45.596 193 96 3 9 200 192 376 6.74e-49 164
MS.gene99829.t1 MTR_2g437960 45.596 193 96 3 9 200 192 376 1.43e-48 164
MS.gene99829.t1 MTR_2g438010 48.824 170 81 1 5 174 205 368 2.17e-48 164
MS.gene99829.t1 MTR_2g437180 53.425 146 62 1 24 169 203 342 4.38e-48 162
MS.gene99829.t1 MTR_2g437170 56.618 136 57 1 41 174 220 355 1.48e-47 161
MS.gene99829.t1 MTR_2g438020 48.235 170 82 1 5 174 239 402 2.05e-47 162
MS.gene99829.t1 MTR_2g438020 65.909 44 15 0 1 44 128 171 7.19e-11 61.2
MS.gene99829.t1 MTR_2g437160 58.730 126 52 0 49 174 235 360 1.12e-46 159
MS.gene99829.t1 MTR_2g437130 43.500 200 86 4 2 174 137 336 1.58e-45 155
MS.gene99829.t1 MTR_2g437240 50.331 151 69 1 24 174 219 363 2.14e-44 153
MS.gene99829.t1 MTR_2g437120 48.315 178 82 4 24 200 205 373 2.47e-44 153
MS.gene99829.t1 MTR_2g437990 48.077 156 78 2 46 200 219 372 3.33e-44 152
MS.gene99829.t1 MTR_4g119550 48.052 154 74 1 24 177 201 348 1.30e-43 150
MS.gene99829.t1 MTR_2g437100 50.920 163 75 3 41 200 225 385 1.25e-42 148
MS.gene99829.t1 MTR_2g437260 40.828 169 91 3 2 169 166 326 2.37e-40 142
MS.gene99829.t1 MTR_2g436460 47.619 147 70 2 24 169 196 336 4.20e-39 138
MS.gene99829.t1 MTR_4g120380 43.125 160 85 1 15 174 184 337 6.00e-38 135
MS.gene99829.t1 MTR_4g119580 38.579 197 98 4 15 203 184 365 2.17e-37 134
MS.gene99829.t1 MTR_4g120380 43.125 160 85 1 15 174 184 337 3.40e-37 134
MS.gene99829.t1 MTR_4g120380 31.953 169 89 6 24 176 260 418 1.01e-15 75.1
MS.gene99829.t1 MTR_2g019840 50.847 118 57 1 54 171 218 334 5.05e-32 119
MS.gene99829.t1 MTR_2g436380 51.639 122 52 3 52 173 1 115 5.53e-31 115
MS.gene99829.t1 MTR_2g019810 39.344 183 100 4 4 185 164 336 1.10e-30 115
MS.gene99829.t1 MTR_4g119570 35.032 157 63 2 15 171 76 193 3.90e-22 90.5
MS.gene99829.t1 MTR_4g007490 32.278 158 103 1 14 171 179 332 6.80e-21 89.7
MS.gene99829.t1 MTR_3g450500 37.168 113 71 0 52 164 215 327 1.39e-20 88.6
MS.gene99829.t1 MTR_3g085240 37.500 144 56 4 27 163 112 228 6.43e-17 77.0
MS.gene99829.t1 MTR_2g436370 66.071 56 16 1 1 53 105 160 3.88e-14 68.6
MS.gene99829.t1 MTR_8g080990 27.485 171 105 4 13 170 175 339 7.20e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99829.t1 AT5G07900 33.742 163 103 2 10 171 206 364 5.26e-28 109
MS.gene99829.t1 AT5G64950 29.697 165 104 2 4 164 172 328 2.40e-18 82.8
MS.gene99829.t1 AT1G21150 35.780 109 70 0 63 171 242 350 2.95e-16 76.6
MS.gene99829.t1 AT1G21150 35.780 109 70 0 63 171 206 314 2.99e-16 76.6
MS.gene99829.t1 AT1G21150 35.780 109 70 0 63 171 306 414 3.86e-16 76.6

Find 49 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATTTAGTGATGAACTTT+TGG 0.234643 7.2:+71496932 MS.gene99829:CDS
AACCTTTGTTGAGAAGAAAT+TGG 0.244533 7.2:-71497053 None:intergenic
AGACCAACCCCATTTCTTAA+AGG 0.251614 7.2:-71496845 None:intergenic
GGTGAAGGAATTAAAGGATT+TGG 0.259676 7.2:+71496735 MS.gene99829:CDS
CTTAACACAGCCTGGTTTAG+AGG 0.282699 7.2:-71498218 None:intergenic
ATGGATGTTAACATAGAATA+AGG 0.283748 7.2:-71496901 None:intergenic
GGACAAAATATAAGGTGTTT+TGG 0.289482 7.2:-71496989 None:intergenic
TTCACAGATTCAAACACTTT+TGG 0.311632 7.2:-71498285 None:intergenic
CTATGGTCTGCTCGTGGCTT+TGG 0.317354 7.2:-71498164 None:intergenic
AAACTTTGGCAACACCGTTT+TGG 0.327649 7.2:-71496411 None:intergenic
GTGAAGGAATTAAAGGATTT+GGG 0.334432 7.2:+71496736 MS.gene99829:CDS
AAACTTGAGGACAAAATATA+AGG 0.355362 7.2:-71496997 None:intergenic
TTGGGTCAATCAGTTGGGTT+GGG 0.365374 7.2:+71496951 MS.gene99829:CDS
AAGTTGATGCCTTTAAGAAA+TGG 0.366199 7.2:+71496836 MS.gene99829:CDS
GAAGCCGGTGAAGGAATTAA+AGG 0.370581 7.2:+71496729 MS.gene99829:CDS
AGTTGATGCCTTTAAGAAAT+GGG 0.371481 7.2:+71496837 MS.gene99829:CDS
GTCAGAGGTAGAAGCGCCTT+TGG 0.402517 7.2:-71496447 None:intergenic
CAGCCGTAAACAAAACCTTA+TGG 0.417361 7.2:+71496806 MS.gene99829:CDS
ATCAACTTTCTCTTTCCATA+AGG 0.422777 7.2:-71496821 None:intergenic
AGGCCTGCTGAAGCCGAAGC+TGG 0.423304 7.2:-71498188 None:intergenic
GGTTTGCAGGAAAGCAGCTC+TGG 0.441213 7.2:-71496386 None:intergenic
CTGAAGCCGAAGCTGGACTA+TGG 0.452775 7.2:-71498181 None:intergenic
AGGCTTACATACAAGACTCT+AGG 0.479742 7.2:-71496494 None:intergenic
TTTGGGTCAATCAGTTGGGT+TGG 0.480856 7.2:+71496950 MS.gene99829:CDS
GTACTGCCTGCGAGATGCAC+AGG 0.491692 7.2:-71498256 None:intergenic
AGCAGACCATAGTCCAGCTT+CGG 0.496747 7.2:+71498175 MS.gene99829:CDS
AAATCCTTTAATTCCTTCAC+CGG 0.498981 7.2:-71496733 None:intergenic
GTCTGCTCGTGGCTTTGGAA+TGG 0.512759 7.2:-71498159 None:intergenic
GCTCCAGTCTTAACACAGCC+TGG 0.514305 7.2:-71498226 None:intergenic
GTCCAATTTCTTCTCAACAA+AGG 0.517975 7.2:+71497051 MS.gene99829:CDS
AGTCCAGCTTCGGCTTCAGC+AGG 0.518091 7.2:+71498185 MS.gene99829:CDS
TCAGTTGGGTTGGGATGCTA+AGG 0.533835 7.2:+71496960 MS.gene99829:CDS
AAACCAGGCTGTGTTAAGAC+TGG 0.534857 7.2:+71498223 MS.gene99829:CDS
TCAGTCCCTGTGCATCTCGC+AGG 0.543483 7.2:+71498250 MS.gene99829:CDS
TTCCTGCAAACCCTCCAAAA+CGG 0.545667 7.2:+71496397 MS.gene99829:CDS
CCTGAGTAAGCCTCTAAACC+AGG 0.548974 7.2:+71498208 MS.gene99829:CDS
CTCTAGGGTTCTTATCGACA+AGG 0.551410 7.2:-71496478 None:intergenic
GACACGTGACATGCTGAAGC+CGG 0.555634 7.2:+71496714 MS.gene99829:CDS
GGCTTACATACAAGACTCTA+GGG 0.561427 7.2:-71496493 None:intergenic
AATTGGACAACAGCGGCCCT+CGG 0.562081 7.2:-71497036 None:intergenic
CCTGGTTTAGAGGCTTACTC+AGG 0.569297 7.2:-71498208 None:intergenic
GTTGATGCCTTTAAGAAATG+GGG 0.573670 7.2:+71496838 MS.gene99829:CDS
TGACATGCTGAAGCCGGTGA+AGG 0.587868 7.2:+71496720 MS.gene99829:CDS
ATGCCTTTAAGAAATGGGGT+TGG 0.598819 7.2:+71496842 MS.gene99829:CDS
AATTGCTTAGGGAACAAAGT+CGG 0.615679 7.2:+71496683 MS.gene99829:intron
TACTGCCTGCGAGATGCACA+GGG 0.649033 7.2:-71498255 None:intergenic
GACAAGGTTAACAATGTCAG+AGG 0.650418 7.2:-71496462 None:intergenic
GCTGGACTATGGTCTGCTCG+TGG 0.666809 7.2:-71498170 None:intergenic
GAGAAGAAATTGGACAACAG+CGG 0.698982 7.2:-71497043 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACAATTCAAATAGAATA+TGG - chr7.2:71497283-71497302 None:intergenic 15.0%
!! TATTCTATTTGAATTGTATT+TGG + chr7.2:71497283-71497302 MS.gene99829:intron 15.0%
!! TTTAAATCAAATTAAACGTA+TGG - chr7.2:71497759-71497778 None:intergenic 15.0%
!!! ATTTAATTTTCTAGCATTTA+TGG + chr7.2:71497445-71497464 MS.gene99829:intron 15.0%
!!! CACTAAATTAATTTTATCAA+TGG - chr7.2:71496923-71496942 None:intergenic 15.0%
!!! TTTAATTTTCTAGCATTTAT+GGG + chr7.2:71497446-71497465 MS.gene99829:intron 15.0%
!! AACTTATTAATCACTACAAA+TGG - chr7.2:71497105-71497124 None:intergenic 20.0%
!! AGAATTAAATTACTATGACA+AGG - chr7.2:71497808-71497827 None:intergenic 20.0%
!! ATATGTTGTTGGATTTAAAA+TGG + chr7.2:71497555-71497574 MS.gene99829:intron 20.0%
!! CAAACATTAAAAATTGCTTA+GGG + chr7.2:71496672-71496691 MS.gene99829:intron 20.0%
!! GAATCTAAAAAACAATTCAT+AGG - chr7.2:71496540-71496559 None:intergenic 20.0%
!! GAATTTATGCAATAGATTAT+TGG - chr7.2:71497523-71497542 None:intergenic 20.0%
!! TCAAACATTAAAAATTGCTT+AGG + chr7.2:71496671-71496690 MS.gene99829:intron 20.0%
!!! AATCCTTCAAAAATAACTTT+TGG + chr7.2:71496763-71496782 MS.gene99829:CDS 20.0%
!!! GAGAATTGTTAAATTTTGTA+AGG - chr7.2:71498040-71498059 None:intergenic 20.0%
!!! TAATTTAGTGATGAACTTTT+GGG + chr7.2:71496933-71496952 MS.gene99829:CDS 20.0%
!!! TTAATTTAGTGATGAACTTT+TGG + chr7.2:71496932-71496951 MS.gene99829:CDS 20.0%
!!! TTTATAAAACGTTTTGAGAA+CGG + chr7.2:71497138-71497157 MS.gene99829:intron 20.0%
! AAACTTGAGGACAAAATATA+AGG - chr7.2:71497000-71497019 None:intergenic 25.0%
! ATGGATGTTAACATAGAATA+AGG - chr7.2:71496904-71496923 None:intergenic 25.0%
! ATTATTGGACTATACAAACA+TGG - chr7.2:71497508-71497527 None:intergenic 25.0%
! GAGTGAAAAAATTGAAACTT+TGG - chr7.2:71496428-71496447 None:intergenic 25.0%
! TTAAATCCAACAACATATTC+TGG - chr7.2:71497553-71497572 None:intergenic 25.0%
! TTTAAGAATCTTACCTACAA+TGG + chr7.2:71497591-71497610 MS.gene99829:intron 25.0%
!! AAATGATTTTGTTGCATAGA+AGG - chr7.2:71497658-71497677 None:intergenic 25.0%
!! GCAATTTTTAATGTTTGAGT+CGG - chr7.2:71496669-71496688 None:intergenic 25.0%
!! TAAATTTTCGTACATAGTAC+CGG - chr7.2:71497430-71497449 None:intergenic 25.0%
!! TTATATTTTGTCCTCAAGTT+TGG + chr7.2:71496999-71497018 MS.gene99829:CDS 25.0%
!!! AAGCAATATGATGGAAATTT+TGG + chr7.2:71497631-71497650 MS.gene99829:intron 25.0%
!!! ACACCAAAAGTTATTTTTGA+AGG - chr7.2:71496769-71496788 None:intergenic 25.0%
!!! ATTTTGAGATGTTGTAGTTA+AGG + chr7.2:71497674-71497693 MS.gene99829:intron 25.0%
!!! GTATCTTTTAAAGTTGTAAG+AGG + chr7.2:71497167-71497186 MS.gene99829:intron 25.0%
!!! TTATAAAACGTTTTGAGAAC+GGG + chr7.2:71497139-71497158 MS.gene99829:intron 25.0%
!!! TTTCAATTTTTTCACTCCAA+AGG + chr7.2:71496431-71496450 MS.gene99829:CDS 25.0%
!!! TTTCCATAAGGTTTTGTTTA+CGG - chr7.2:71496812-71496831 None:intergenic 25.0%
AAATCCTTTAATTCCTTCAC+CGG - chr7.2:71496736-71496755 None:intergenic 30.0%
AACCTTTGTTGAGAAGAAAT+TGG - chr7.2:71497056-71497075 None:intergenic 30.0%
AATATTGGCATCTTTCTTAC+CGG + chr7.2:71498068-71498087 MS.gene99829:intron 30.0%
AATGAGTCTATACTGATAGT+TGG - chr7.2:71497861-71497880 None:intergenic 30.0%
ATCAACTTTCTCTTTCCATA+AGG - chr7.2:71496824-71496843 None:intergenic 30.0%
GTGAAGGAATTAAAGGATTT+GGG + chr7.2:71496736-71496755 MS.gene99829:CDS 30.0%
GTTGTTTATAGGGAAGATTT+AGG + chr7.2:71497969-71497988 MS.gene99829:intron 30.0%
TAAGAGGAAAAATGCAATCT+TGG + chr7.2:71497183-71497202 MS.gene99829:intron 30.0%
TACGAAAAAACTTCCATTGT+AGG - chr7.2:71497607-71497626 None:intergenic 30.0%
TAGATTCTTGCAATCTAACA+AGG + chr7.2:71496553-71496572 MS.gene99829:intron 30.0%
TATCAGTATAGACTCATTCT+AGG + chr7.2:71497863-71497882 MS.gene99829:intron 30.0%
TCGTAATTGAAGCAATATGA+TGG + chr7.2:71497622-71497641 MS.gene99829:intron 30.0%
! ACTTAGAATCTAAAGCATGA+GGG - chr7.2:71497910-71497929 None:intergenic 30.0%
! AGTTGATGCCTTTAAGAAAT+GGG + chr7.2:71496837-71496856 MS.gene99829:CDS 30.0%
! GCAATCTAACAAGGAAATTT+TGG + chr7.2:71496562-71496581 MS.gene99829:intron 30.0%
! TACTTAGAATCTAAAGCATG+AGG - chr7.2:71497911-71497930 None:intergenic 30.0%
! TGATAACATCAAACGTTTTC+CGG + chr7.2:71497408-71497427 MS.gene99829:intron 30.0%
!! AAGTTGATGCCTTTAAGAAA+TGG + chr7.2:71496836-71496855 MS.gene99829:CDS 30.0%
!! GGACAAAATATAAGGTGTTT+TGG - chr7.2:71496992-71497011 None:intergenic 30.0%
!! TCCACACATTGTTGTTTATA+GGG + chr7.2:71497959-71497978 MS.gene99829:intron 30.0%
!!! AATATAAGGTGTTTTGGCAA+TGG - chr7.2:71496986-71497005 None:intergenic 30.0%
!!! TATAAAACGTTTTGAGAACG+GGG + chr7.2:71497140-71497159 MS.gene99829:intron 30.0%
AAAGATGCCAATATTGAGCT+AGG - chr7.2:71498063-71498082 None:intergenic 35.0%
AAGACGTGAAAACCTAATCA+TGG - chr7.2:71497236-71497255 None:intergenic 35.0%
AAGATGCCAATATTGAGCTA+GGG - chr7.2:71498062-71498081 None:intergenic 35.0%
AATGCAATCTTGGATACACT+AGG + chr7.2:71497193-71497212 MS.gene99829:intron 35.0%
AATTCTCCCTAGCTCAATAT+TGG + chr7.2:71498053-71498072 MS.gene99829:intron 35.0%
AATTGCTTAGGGAACAAAGT+CGG + chr7.2:71496683-71496702 MS.gene99829:intron 35.0%
ATCACAATGCTAATCGAGAA+TGG + chr7.2:71496638-71496657 MS.gene99829:intron 35.0%
ATGCAATCTTGGATACACTA+GGG + chr7.2:71497194-71497213 MS.gene99829:intron 35.0%
GCTATACCAGAATATGTTGT+TGG + chr7.2:71497544-71497563 MS.gene99829:intron 35.0%
GGTGAAGGAATTAAAGGATT+TGG + chr7.2:71496735-71496754 MS.gene99829:CDS 35.0%
GTCCAATTTCTTCTCAACAA+AGG + chr7.2:71497051-71497070 MS.gene99829:CDS 35.0%
TCCCTATAAACAACAATGTG+TGG - chr7.2:71497963-71497982 None:intergenic 35.0%
TCGAGACTATTTGATTCTTG+AGG - chr7.2:71496517-71496536 None:intergenic 35.0%
TGTCCTCAAGTTTGGAAAAA+AGG + chr7.2:71497007-71497026 MS.gene99829:CDS 35.0%
TTGGACTATACAAACATGGA+AGG - chr7.2:71497504-71497523 None:intergenic 35.0%
! GTTGATGCCTTTAAGAAATG+GGG + chr7.2:71496838-71496857 MS.gene99829:CDS 35.0%
!! AACTTTTGGGTCAATCAGTT+GGG + chr7.2:71496946-71496965 MS.gene99829:CDS 35.0%
!! ACAAGGAAATTTTGGCATTG+TGG + chr7.2:71496570-71496589 MS.gene99829:intron 35.0%
!! CTCCACACATTGTTGTTTAT+AGG + chr7.2:71497958-71497977 MS.gene99829:intron 35.0%
!!! GATCCTTTTTTCCAAACTTG+AGG - chr7.2:71497013-71497032 None:intergenic 35.0%
AGACCAACCCCATTTCTTAA+AGG - chr7.2:71496848-71496867 None:intergenic 40.0%
AGGCTTACATACAAGACTCT+AGG - chr7.2:71496497-71496516 None:intergenic 40.0%
CAGCCGTAAACAAAACCTTA+TGG + chr7.2:71496806-71496825 MS.gene99829:CDS 40.0%
CGAGTGATTCAAACTTTGAC+CGG - chr7.2:71498090-71498109 None:intergenic 40.0%
GACAAGGTTAACAATGTCAG+AGG - chr7.2:71496465-71496484 None:intergenic 40.0%
GACATGCATGTACCATGATT+AGG + chr7.2:71497221-71497240 MS.gene99829:intron 40.0%
GAGAAGAAATTGGACAACAG+CGG - chr7.2:71497046-71497065 None:intergenic 40.0%
GGAAAAAAGGATCATTCCGA+GGG + chr7.2:71497020-71497039 MS.gene99829:CDS 40.0%
GGCTTACATACAAGACTCTA+GGG - chr7.2:71496496-71496515 None:intergenic 40.0%
TGGAAAAAAGGATCATTCCG+AGG + chr7.2:71497019-71497038 MS.gene99829:CDS 40.0%
! AAACTTTGGCAACACCGTTT+TGG - chr7.2:71496414-71496433 None:intergenic 40.0%
! ATGCCTTTAAGAAATGGGGT+TGG + chr7.2:71496842-71496861 MS.gene99829:CDS 40.0%
! TTGCTTAGTTTGACGAATGC+TGG + chr7.2:71497338-71497357 MS.gene99829:intron 40.0%
!! GAACTTTTGGGTCAATCAGT+TGG + chr7.2:71496945-71496964 MS.gene99829:CDS 40.0%
!!! GGGCATCGAATTCTTCTTTT+TGG + chr7.2:71497466-71497485 MS.gene99829:intron 40.0%
!!! GGTTTTGTTTACGGCTGTTT+TGG - chr7.2:71496803-71496822 None:intergenic 40.0%
AAACCAGGCTGTGTTAAGAC+TGG + chr7.2:71498223-71498242 MS.gene99829:CDS 45.0%
CTTAACACAGCCTGGTTTAG+AGG - chr7.2:71498221-71498240 None:intergenic 45.0%
GAAGCCGGTGAAGGAATTAA+AGG + chr7.2:71496729-71496748 MS.gene99829:CDS 45.0%
TTCCTGCAAACCCTCCAAAA+CGG + chr7.2:71496397-71496416 MS.gene99829:CDS 45.0%
TTGGGTCAATCAGTTGGGTT+GGG + chr7.2:71496951-71496970 MS.gene99829:CDS 45.0%
TTGGTACAGCAGACTGTGAT+TGG + chr7.2:71497302-71497321 MS.gene99829:intron 45.0%
TTTGGGTCAATCAGTTGGGT+TGG + chr7.2:71496950-71496969 MS.gene99829:CDS 45.0%
!! CTCTAGGGTTCTTATCGACA+AGG - chr7.2:71496481-71496500 None:intergenic 45.0%
!! TTTGGCAACACCGTTTTGGA+GGG - chr7.2:71496410-71496429 None:intergenic 45.0%
AGCAGACCATAGTCCAGCTT+CGG + chr7.2:71498175-71498194 MS.gene99829:CDS 50.0%
CCTGAGTAAGCCTCTAAACC+AGG + chr7.2:71498208-71498227 MS.gene99829:CDS 50.0%
CCTGGTTTAGAGGCTTACTC+AGG - chr7.2:71498211-71498230 None:intergenic 50.0%
! CTTTGGCAACACCGTTTTGG+AGG - chr7.2:71496411-71496430 None:intergenic 50.0%
!! TCAGTTGGGTTGGGATGCTA+AGG + chr7.2:71496960-71496979 MS.gene99829:CDS 50.0%
AATTGGACAACAGCGGCCCT+CGG - chr7.2:71497039-71497058 None:intergenic 55.0%
CTATGGTCTGCTCGTGGCTT+TGG - chr7.2:71498167-71498186 None:intergenic 55.0%
CTGAAGCCGAAGCTGGACTA+TGG - chr7.2:71498184-71498203 None:intergenic 55.0%
GACACGTGACATGCTGAAGC+CGG + chr7.2:71496714-71496733 MS.gene99829:CDS 55.0%
GCTCCAGTCTTAACACAGCC+TGG - chr7.2:71498229-71498248 None:intergenic 55.0%
GGTTTGCAGGAAAGCAGCTC+TGG - chr7.2:71496389-71496408 None:intergenic 55.0%
TACTGCCTGCGAGATGCACA+GGG - chr7.2:71498258-71498277 None:intergenic 55.0%
TGACATGCTGAAGCCGGTGA+AGG + chr7.2:71496720-71496739 MS.gene99829:CDS 55.0%
!! CTTTGGAATGGCTGCGCGAA+TGG - chr7.2:71498150-71498169 None:intergenic 55.0%
!! GTCAGAGGTAGAAGCGCCTT+TGG - chr7.2:71496450-71496469 None:intergenic 55.0%
!! GTCTGCTCGTGGCTTTGGAA+TGG - chr7.2:71498162-71498181 None:intergenic 55.0%
!!! CACCGTTTTGGAGGGTTTGC+AGG - chr7.2:71496402-71496421 None:intergenic 55.0%
AGTCCAGCTTCGGCTTCAGC+AGG + chr7.2:71498185-71498204 MS.gene99829:CDS 60.0%
GCTGGACTATGGTCTGCTCG+TGG - chr7.2:71498173-71498192 None:intergenic 60.0%
GTACTGCCTGCGAGATGCAC+AGG - chr7.2:71498259-71498278 None:intergenic 60.0%
TCAGTCCCTGTGCATCTCGC+AGG + chr7.2:71498250-71498269 MS.gene99829:CDS 60.0%
TGGAATGGCTGCGCGAATGG+AGG - chr7.2:71498147-71498166 None:intergenic 60.0%
AGGCCTGCTGAAGCCGAAGC+TGG - chr7.2:71498191-71498210 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 71496383 71498298 71496383 ID=MS.gene99829
chr7.2 mRNA 71496383 71498298 71496383 ID=MS.gene99829.t1;Parent=MS.gene99829
chr7.2 exon 71496383 71496504 71496383 ID=MS.gene99829.t1.exon1;Parent=MS.gene99829.t1
chr7.2 CDS 71496383 71496504 71496383 ID=cds.MS.gene99829.t1;Parent=MS.gene99829.t1
chr7.2 exon 71496693 71497072 71496693 ID=MS.gene99829.t1.exon2;Parent=MS.gene99829.t1
chr7.2 CDS 71496693 71497072 71496693 ID=cds.MS.gene99829.t1;Parent=MS.gene99829.t1
chr7.2 exon 71498159 71498298 71498159 ID=MS.gene99829.t1.exon3;Parent=MS.gene99829.t1
chr7.2 CDS 71498159 71498298 71498159 ID=cds.MS.gene99829.t1;Parent=MS.gene99829.t1
Gene Sequence

>MS.gene99829

ATGCCAGAGCTGCTTTCCTGCAAACCCTCCAAAACGGTGTTGCCAAAGTTTCAATTTTTTCACTCCAAAGGCGCTTCTACCTCTGACATTGTTAACCTTGTCGATAAGAACCCTAGAGTCTTGTATGTAAGCCTCAAGAATCAAATAGTCTCGACCTATGAATTGTTTTTTAGATTCTTGCAATCTAACAAGGAAATTTTGGCATTGTGGAATTACAATGCATATTTACTTTGTGATCGTTCTGTGCAAAATAACATCACAATGCTAATCGAGAATGGAGTCTCCGACTCAAACATTAAAAATTGCTTAGGGAACAAAGTCGGATTTTCAAGACACGTGACATGCTGAAGCCGGTGAAGGAATTAAAGGATTTGGGTTTTAATCCTTCAAAAATAACTTTTGGTGTAGCATTGTATGCCAAAACAGCCGTAAACAAAACCTTATGGAAAGAGAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCTGAAGAAGATTCTCTTGAAGCATTTAGAAAGAAACCTTATTCTATGTTAACATCCATTGATAAAATTAATTTAGTGATGAACTTTTGGGTCAATCAGTTGGGTTGGGATGCTAAGGCCATTGCCAAAACACCTTATATTTTGTCCTCAAGTTTGGAAAAAAGGATCATTCCGAGGGCCGCTGTTGTCCAATTTCTTCTCAACAAAGGTTTGAATAAGAATGCAAGCTTAAATTATCCATTTGTAGTGATTAATAAGTTGTTTCTTAATATGTTTATAAAACGTTTTGAGAACGGGGCTTCGTATCTTTTAAAGTTGTAAGAGGAAAAATGCAATCTTGGATACACTAGGGACAAGACATGCATGTACCATGATTAGGTTTTCACGTCTTTAGACTGAATATGTTATTGTTGTTCCATATTCTATTTGAATTGTATTTGGTACAGCAGACTGTGATTGGATCTAATTTAGCTTTGCTTAGTTTGACGAATGCTGGTTTTGTATTGATTGATATTTCTTCAAAATCTTATTGTTTATCAGTCTTGATAACATCAAACGTTTTCCGGTACTATGTACGAAAATTTAATTTTCTAGCATTTATGGGCATCGAATTCTTCTTTTTGGAGTGTCATTTCTCCTTCCATGTTTGTATAGTCCAATAATCTATTGCATAAATTCAGCTATACCAGAATATGTTGTTGGATTTAAAATGGTTTCAAGTCGTAGTTTAAGAATCTTACCTACAATGGAAGTTTTTTCGTAATTGAAGCAATATGATGGAAATTTTGGTCCTTCTATGCAACAAAATCATTTTGAGATGTTGTAGTTAAGGTGTGTCGACTCGAGTGCTTTTGATTGAAAAAGATGCAGAACAATAAAGAAAATAAAAATCCATACGTTTAATTTGATTTAAATAAAATATATCAATTTATATAAATAACCTTGTCATAGTAATTTAATTCTTTGAATTTATCTTTCTTATGTCTTACTATTCCAACTATCAGTATAGACTCATTCTAGGTTCACACAATTTACTAAGAAACCCTCATGCTTTAGATTCTAAGTAATTCTTCTGAATATTTTTTCGTTGATTCTCCACACATTGTTGTTTATAGGGAAGATTTAGGTAGTTTCTGTTACTAATCTTTAAGTAGCTGTTGCTAGATAATGATCCTTACAAAATTTAACAATTCTCCCTAGCTCAATATTGGCATCTTTCTTACCGGTCAAAGTTTGAATCACTCGCAGACAATTCATTTTTTATCATAATATGATACTGCCTCCATTCGCGCAGCCATTCCAAAGCCACGAGCAGACCATAGTCCAGCTTCGGCTTCAGCAGGCCTGAGTAAGCCTCTAAACCAGGCTGTGTTAAGACTGGAGCATCAGTCCCTGTGCATCTCGCAGGCAGTACCAACAACCAAAAGTGTTTGA
Protein sequence

>MS.gene99829.t1

MPELLSCKPSKTVLPKFQFFHSKGASTSDIVNLVDKNPRVLEQSRIFKTRDMLKPVKELKDLGFNPSKITFGVALYAKTAVNKTLWKEKVDAFKKWGWSEEDSLEAFRKKPYSMLTSIDKINLVMNFWVNQLGWDAKAIAKTPYILSSSLEKRIIPRAAVVQFLLNKAIPKPRADHSPASASAGLSKPLNQAVLRLEHQSLCISQAVPTTKSV