Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99907.t1 | XP_013459813.1 | 96.1 | 179 | 6 | 1 | 1 | 179 | 1 | 178 | 5.00E-96 | 360.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99907.t1 | A0A072UVJ3 | 96.1 | 179 | 6 | 1 | 1 | 179 | 1 | 178 | 3.6e-96 | 360.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene99907.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99907.t1 | MTR_3g052770 | 96.089 | 179 | 6 | 1 | 1 | 179 | 1 | 178 | 1.66e-126 | 360 |
| MS.gene99907.t1 | MTR_4g104230 | 63.946 | 147 | 53 | 0 | 33 | 179 | 36 | 182 | 8.12e-69 | 214 |
| MS.gene99907.t1 | MTR_4g104230 | 63.946 | 147 | 53 | 0 | 33 | 179 | 37 | 183 | 1.22e-68 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99907.t1 | AT5G40710 | 45.902 | 244 | 99 | 5 | 21 | 236 | 26 | 264 | 3.66e-67 | 209 |
| MS.gene99907.t1 | AT5G40710 | 48.598 | 214 | 96 | 4 | 21 | 232 | 26 | 227 | 2.31e-65 | 204 |
| MS.gene99907.t1 | AT5G63280 | 58.553 | 152 | 61 | 1 | 30 | 179 | 26 | 177 | 3.28e-65 | 204 |
Find 40 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTCCAATTTACTTAATT+TGG | 0.122652 | 3.1:-39816900 | MS.gene99907:intron |
| AATGTTATTGTTCAGAATTC+TGG | 0.162180 | 3.1:-39817318 | MS.gene99907:intron |
| AAGAACAATGAATAAGATTT+TGG | 0.184207 | 3.1:-39818457 | None:intergenic |
| TCATACCAAATTAAGTAAAT+TGG | 0.245660 | 3.1:+39816895 | None:intergenic |
| TATGAGATTTATGTTGTTCC+TGG | 0.279195 | 3.1:+39817005 | None:intergenic |
| TGTGATCATGAAATTAATTC+CGG | 0.329062 | 3.1:-39815914 | MS.gene99907:CDS |
| GTATTTCAGAGGATTGAAAA+AGG | 0.338241 | 3.1:-39814188 | MS.gene99907:intron |
| TGGTGTTCTTGTTGCTTACA+AGG | 0.396400 | 3.1:-39818416 | MS.gene99907:CDS |
| TTATTTCTTGCTGCAGCAGC+AGG | 0.412858 | 3.1:+39815869 | None:intergenic |
| TCTCTATATATATCATTGTC+AGG | 0.420126 | 3.1:+39817028 | None:intergenic |
| TGCTATTTGCAAGTGAAAGT+TGG | 0.443743 | 3.1:-39813996 | MS.gene99907:CDS |
| GTGATCATGAAATTAATTCC+GGG | 0.457434 | 3.1:-39815913 | MS.gene99907:CDS |
| GCAGTATTTGACGCCATTTG+TGG | 0.459297 | 3.1:-39817092 | MS.gene99907:intron |
| AAAGTAACTGTGTATCTAAC+GGG | 0.460709 | 3.1:-39814065 | MS.gene99907:CDS |
| ATTGTTCAGAATTCTGGATC+AGG | 0.460914 | 3.1:-39817312 | MS.gene99907:intron |
| GAGAAAGAAGTAGAATAGCT+TGG | 0.485109 | 3.1:-39817256 | MS.gene99907:CDS |
| ACAGGTTGAGAGCTTCTAAA+GGG | 0.514372 | 3.1:+39814096 | None:intergenic |
| CTCATATAGATATAAATGAA+TGG | 0.514723 | 3.1:-39816988 | MS.gene99907:CDS |
| AACAGGTTGAGAGCTTCTAA+AGG | 0.522436 | 3.1:+39814095 | None:intergenic |
| GAAAGATCTAATGATTATGA+TGG | 0.534381 | 3.1:+39814118 | None:intergenic |
| GGTTTGGTTTCAACGATTTG+TGG | 0.534617 | 3.1:-39818436 | MS.gene99907:CDS |
| GAAAGTAACTGTGTATCTAA+CGG | 0.540404 | 3.1:-39814066 | MS.gene99907:CDS |
| ATAATATCTCAAGAAGGTGC+AGG | 0.547108 | 3.1:-39817057 | MS.gene99907:CDS |
| TATTTGCAAGTGAAAGTTGG+AGG | 0.550005 | 3.1:-39813993 | MS.gene99907:CDS |
| CTGAGGCGTGTCTCACAAGC+CGG | 0.560885 | 3.1:-39814154 | MS.gene99907:CDS |
| CACATACATCTGCTAAGCAC+CGG | 0.569311 | 3.1:+39815948 | None:intergenic |
| TTGCAAGTGAAAGTTGGAGG+AGG | 0.590282 | 3.1:-39813990 | MS.gene99907:CDS |
| CTCTATATATATCATTGTCA+GGG | 0.590660 | 3.1:+39817029 | None:intergenic |
| TTGCAGCATCTGAATCTACA+TGG | 0.597085 | 3.1:+39817802 | None:intergenic |
| CGGTGCTTAGCAGATGTATG+TGG | 0.600256 | 3.1:-39815947 | MS.gene99907:CDS |
| ATGTAGATTCAGATGCTGCA+AGG | 0.607887 | 3.1:-39817800 | MS.gene99907:intron |
| AGCTTGGAAGATCGTTCAAG+AGG | 0.626181 | 3.1:-39817240 | MS.gene99907:intron |
| GTTGAATCCAGAAAGAAAGC+CGG | 0.628642 | 3.1:-39815967 | MS.gene99907:intron |
| CAATGATATATATAGAGACC+AGG | 0.632044 | 3.1:-39817023 | MS.gene99907:CDS |
| AAGAAATAAGCATATATGTG+AGG | 0.634147 | 3.1:-39815855 | MS.gene99907:intron |
| GATATAAATGAATGGCAGTG+TGG | 0.647971 | 3.1:-39816980 | MS.gene99907:CDS |
| AAAAGGAAAATCAAATGCTG+AGG | 0.649523 | 3.1:-39814171 | MS.gene99907:CDS |
| TGAAAGTTGGAGGAGGAAAG+CGG | 0.671069 | 3.1:-39813983 | MS.gene99907:CDS |
| CTTACATCATCATCAGTGTG+TGG | 0.677365 | 3.1:+39818381 | None:intergenic |
| ATTCTGGATCAGGAGCAGAG+TGG | 0.757422 | 3.1:-39817302 | MS.gene99907:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATAATAACTATTGTAA+CGG | - | chr3.1:39818158-39818177 | MS.gene99907:intron | 10.0% |
| !!! | ATAAAATAATACTAGTTTTA+TGG | + | chr3.1:39814480-39814499 | None:intergenic | 10.0% |
| !!! | CTATTTTCTAAAATTATTAT+TGG | - | chr3.1:39815832-39815851 | MS.gene99907:intron | 10.0% |
| !!! | GTTGATAATTTTTTTTTTTT+GGG | + | chr3.1:39817881-39817900 | None:intergenic | 10.0% |
| !!! | TATTTTTTGAAATATTAATG+TGG | - | chr3.1:39815660-39815679 | MS.gene99907:intron | 10.0% |
| !!! | TGTTGATAATTTTTTTTTTT+TGG | + | chr3.1:39817882-39817901 | None:intergenic | 10.0% |
| !! | AAAAATATAATATCTCAAGA+AGG | - | chr3.1:39815328-39815347 | MS.gene99907:intron | 15.0% |
| !! | AGAAATTAGAACATAAAATT+AGG | + | chr3.1:39816599-39816618 | None:intergenic | 15.0% |
| !! | CAATAGTTATTATTAAAGTA+TGG | + | chr3.1:39818155-39818174 | None:intergenic | 15.0% |
| !!! | AAAATATTTTTACCTTTTCT+TGG | - | chr3.1:39814999-39815018 | MS.gene99907:intron | 15.0% |
| !!! | GAAATTTTAAAACAACTTTA+AGG | - | chr3.1:39816275-39816294 | MS.gene99907:intron | 15.0% |
| !!! | TAAAATTGTATTGATTCTAT+TGG | + | chr3.1:39815532-39815551 | None:intergenic | 15.0% |
| !!! | TTTGATTTTATGAATTTTGA+TGG | - | chr3.1:39814155-39814174 | MS.gene99907:CDS | 15.0% |
| !! | ATTTAAGTCTCCTTATAAAA+AGG | + | chr3.1:39817219-39817238 | None:intergenic | 20.0% |
| !! | CTCATATAGATATAAATGAA+TGG | - | chr3.1:39815403-39815422 | MS.gene99907:intron | 20.0% |
| !! | GTTAATCCTTATGAAAATTT+CGG | - | chr3.1:39816358-39816377 | MS.gene99907:intron | 20.0% |
| !! | TATAAAATGATGTCAAATAG+TGG | - | chr3.1:39816978-39816997 | MS.gene99907:CDS | 20.0% |
| !! | TCAATTTCTTTACTTATTAG+TGG | + | chr3.1:39814898-39814917 | None:intergenic | 20.0% |
| !! | TCATACCAAATTAAGTAAAT+TGG | + | chr3.1:39815499-39815518 | None:intergenic | 20.0% |
| !! | TCTACATGTATTTATATCAA+AGG | - | chr3.1:39818100-39818119 | MS.gene99907:intron | 20.0% |
| !! | TTATACCCAATAGTATATTA+CGG | + | chr3.1:39816963-39816982 | None:intergenic | 20.0% |
| !! | TTATGTAACAAATACTATGA+TGG | - | chr3.1:39817351-39817370 | MS.gene99907:intron | 20.0% |
| !! | TTGCAGAATTTATATATCTA+TGG | - | chr3.1:39816716-39816735 | MS.gene99907:intron | 20.0% |
| !! | TTGTTAAATAGATGCTATAT+TGG | - | chr3.1:39816898-39816917 | MS.gene99907:intron | 20.0% |
| !!! | AAATTTGCTGAATTTAATCA+TGG | - | chr3.1:39814127-39814146 | MS.gene99907:CDS | 20.0% |
| !!! | AATTTGCTGAATTTAATCAT+GGG | - | chr3.1:39814128-39814147 | MS.gene99907:CDS | 20.0% |
| !!! | ACAAGATAATATTTAGAGTT+TGG | + | chr3.1:39817112-39817131 | None:intergenic | 20.0% |
| !!! | ACTGTTTTTAAAAGCTATAT+TGG | + | chr3.1:39817546-39817565 | None:intergenic | 20.0% |
| !!! | AGTATTTGTTACATAATAAG+TGG | + | chr3.1:39817347-39817366 | None:intergenic | 20.0% |
| !!! | AGTTTTAAAGTTCATTGTTT+AGG | - | chr3.1:39816157-39816176 | MS.gene99907:intron | 20.0% |
| !!! | ATGATCTGAATATTTTTCAA+TGG | - | chr3.1:39814450-39814469 | MS.gene99907:intron | 20.0% |
| !!! | ATTAATGTGGTTATTTTATG+AGG | - | chr3.1:39815673-39815692 | MS.gene99907:intron | 20.0% |
| !!! | ATTTTTCTACTTGAGAAAAA+TGG | - | chr3.1:39814370-39814389 | MS.gene99907:intron | 20.0% |
| !!! | GATGGAAATTTAGTTTTTAA+GGG | - | chr3.1:39814173-39814192 | MS.gene99907:CDS | 20.0% |
| !!! | TAAAATTTCTAGATCAATAC+AGG | + | chr3.1:39816264-39816283 | None:intergenic | 20.0% |
| !!! | TATTTTTCTTTATCCACAAA+TGG | + | chr3.1:39815315-39815334 | None:intergenic | 20.0% |
| !!! | TGATGGAAATTTAGTTTTTA+AGG | - | chr3.1:39814172-39814191 | MS.gene99907:CDS | 20.0% |
| !!! | TTATATGTAGATGTTTTCTT+TGG | - | chr3.1:39814417-39814436 | MS.gene99907:intron | 20.0% |
| !!! | TTTTTCTACTTGAGAAAAAT+GGG | - | chr3.1:39814371-39814390 | MS.gene99907:intron | 20.0% |
| ! | AAACTAATTATCTCTCCTAT+AGG | - | chr3.1:39817380-39817399 | MS.gene99907:intron | 25.0% |
| ! | AAGAAATAAGCATATATGTG+AGG | - | chr3.1:39816536-39816555 | MS.gene99907:intron | 25.0% |
| ! | AAGTAAGTTCTTCAGAATTT+CGG | + | chr3.1:39817174-39817193 | None:intergenic | 25.0% |
| ! | AATGTTATTGTTCAGAATTC+TGG | - | chr3.1:39815073-39815092 | MS.gene99907:intron | 25.0% |
| ! | ACACTCCAATTTACTTAATT+TGG | - | chr3.1:39815491-39815510 | MS.gene99907:intron | 25.0% |
| ! | ACATATAACAACTGAAACAA+AGG | + | chr3.1:39814405-39814424 | None:intergenic | 25.0% |
| ! | ACTAGTTATTTGATCAACAA+TGG | + | chr3.1:39815564-39815583 | None:intergenic | 25.0% |
| ! | AGAATTCTGTCAAATTGTTA+AGG | + | chr3.1:39816765-39816784 | None:intergenic | 25.0% |
| ! | AGGATAAACTTGTAAAACAA+TGG | - | chr3.1:39817400-39817419 | MS.gene99907:intron | 25.0% |
| ! | ATTGTTCCGTAATATACTAT+TGG | - | chr3.1:39816954-39816973 | MS.gene99907:CDS | 25.0% |
| ! | ATTTCTCACCAAAAGAAAAA+TGG | + | chr3.1:39814111-39814130 | None:intergenic | 25.0% |
| ! | CAAAACTTATGAAAGTAGAT+AGG | + | chr3.1:39817451-39817470 | None:intergenic | 25.0% |
| ! | CAAGTGTGTTCTTAAATATT+AGG | + | chr3.1:39815992-39816011 | None:intergenic | 25.0% |
| ! | CTCTATATATATCATTGTCA+GGG | + | chr3.1:39815365-39815384 | None:intergenic | 25.0% |
| ! | GAAAGATCTAATGATTATGA+TGG | + | chr3.1:39818276-39818295 | None:intergenic | 25.0% |
| ! | GGAATTATAAAAGTTTCTTG+TGG | + | chr3.1:39817914-39817933 | None:intergenic | 25.0% |
| ! | TATCCAATATTGATGTATGT+TGG | + | chr3.1:39815240-39815259 | None:intergenic | 25.0% |
| ! | TCGGTTTAATAATTGAAATG+AGG | - | chr3.1:39816394-39816413 | MS.gene99907:intron | 25.0% |
| ! | TCTCTATATATATCATTGTC+AGG | + | chr3.1:39815366-39815385 | None:intergenic | 25.0% |
| ! | TGTAACAAAGAAACAATCAA+AGG | + | chr3.1:39814566-39814585 | None:intergenic | 25.0% |
| ! | TGTGATCATGAAATTAATTC+CGG | - | chr3.1:39816477-39816496 | MS.gene99907:intron | 25.0% |
| ! | TTCAATTATTAAACCGACTA+GGG | + | chr3.1:39816391-39816410 | None:intergenic | 25.0% |
| ! | TTGTTCCGTAATATACTATT+GGG | - | chr3.1:39816955-39816974 | MS.gene99907:CDS | 25.0% |
| ! | TTGTTGATCAAATAACTAGT+TGG | - | chr3.1:39815564-39815583 | MS.gene99907:intron | 25.0% |
| ! | TTTAAGGGAAGTAAAATTTC+AGG | + | chr3.1:39816104-39816123 | None:intergenic | 25.0% |
| ! | TTTCAATTATTAAACCGACT+AGG | + | chr3.1:39816392-39816411 | None:intergenic | 25.0% |
| ! | TTTCTCACCAAAAGAAAAAT+GGG | + | chr3.1:39814110-39814129 | None:intergenic | 25.0% |
| !! | AAAAATCGCACCTTTTTATA+AGG | - | chr3.1:39817206-39817225 | MS.gene99907:intron | 25.0% |
| !! | AATCTACCGAAATTTTCATA+AGG | + | chr3.1:39816367-39816386 | None:intergenic | 25.0% |
| !! | GACATTAAAACTGATTAGTT+TGG | + | chr3.1:39814743-39814762 | None:intergenic | 25.0% |
| !! | GTTTTACAAGTTTATCCTAT+AGG | + | chr3.1:39817398-39817417 | None:intergenic | 25.0% |
| !! | TTGATTGTTTCTTTGTTACA+GGG | - | chr3.1:39814566-39814585 | MS.gene99907:intron | 25.0% |
| !! | TTTGATTGTTTCTTTGTTAC+AGG | - | chr3.1:39814565-39814584 | MS.gene99907:intron | 25.0% |
| !!! | ACTAATCAGTTTTAATGTCT+TGG | - | chr3.1:39814744-39814763 | MS.gene99907:intron | 25.0% |
| !!! | ATTATGATGGCTTCTTTTTT+CGG | + | chr3.1:39818263-39818282 | None:intergenic | 25.0% |
| !!! | GTAAATACCCATTTTTCTTT+TGG | - | chr3.1:39814100-39814119 | MS.gene99907:CDS | 25.0% |
| !!! | TTTCCAGAGATCTTTATTTT+TGG | - | chr3.1:39817139-39817158 | MS.gene99907:intron | 25.0% |
| !!! | TTTTCACTTTTGTATTTCAG+AGG | - | chr3.1:39818192-39818211 | MS.gene99907:intron | 25.0% |
| AAAAGGAAAATCAAATGCTG+AGG | - | chr3.1:39818220-39818239 | MS.gene99907:intron | 30.0% | |
| AAAGTAACTGTGTATCTAAC+GGG | - | chr3.1:39818326-39818345 | MS.gene99907:intron | 30.0% | |
| AAGTATGGTTATTACAGAGA+AGG | + | chr3.1:39818140-39818159 | None:intergenic | 30.0% | |
| AATAAGTTGTTTATCCACAC+AGG | - | chr3.1:39817679-39817698 | MS.gene99907:intron | 30.0% | |
| ACAACTCCAATTCAATTCTA+TGG | + | chr3.1:39814303-39814322 | None:intergenic | 30.0% | |
| AGAGACAGAAAATCTAAAGA+GGG | + | chr3.1:39817268-39817287 | None:intergenic | 30.0% | |
| AGTTATTTATCGTTTCTCCA+CGG | + | chr3.1:39814784-39814803 | None:intergenic | 30.0% | |
| ATATTGAAATACCATGAAGC+CGG | + | chr3.1:39816683-39816702 | None:intergenic | 30.0% | |
| CAAGCATATAAACCAAGAAA+AGG | + | chr3.1:39815014-39815033 | None:intergenic | 30.0% | |
| CAATGATATATATAGAGACC+AGG | - | chr3.1:39815368-39815387 | MS.gene99907:intron | 30.0% | |
| GAAAGTAACTGTGTATCTAA+CGG | - | chr3.1:39818325-39818344 | MS.gene99907:intron | 30.0% | |
| GGAAGTAAAATTTCAGGATT+TGG | + | chr3.1:39816098-39816117 | None:intergenic | 30.0% | |
| GGATTACCATAGAATTGAAT+TGG | - | chr3.1:39814294-39814313 | MS.gene99907:intron | 30.0% | |
| GTAATTGAATGTAGCTACAT+AGG | - | chr3.1:39814920-39814939 | MS.gene99907:intron | 30.0% | |
| GTATTTCAGAGGATTGAAAA+AGG | - | chr3.1:39818203-39818222 | MS.gene99907:intron | 30.0% | |
| GTGATCATGAAATTAATTCC+GGG | - | chr3.1:39816478-39816497 | MS.gene99907:intron | 30.0% | |
| GTGTTCTTAAATATTAGGCT+TGG | + | chr3.1:39815987-39816006 | None:intergenic | 30.0% | |
| GTTAACTGGAAAACAACTAT+CGG | + | chr3.1:39816643-39816662 | None:intergenic | 30.0% | |
| TACAAAAGTGAAAACCTTGT+TGG | + | chr3.1:39818186-39818205 | None:intergenic | 30.0% | |
| TACTAACTCACGACTTATTT+CGG | + | chr3.1:39816050-39816069 | None:intergenic | 30.0% | |
| TACTTCAATCTAATCCAAAC+TGG | + | chr3.1:39815606-39815625 | None:intergenic | 30.0% | |
| TATGAGATTTATGTTGTTCC+TGG | + | chr3.1:39815389-39815408 | None:intergenic | 30.0% | |
| TCACCAAAAATAAAGATCTC+TGG | + | chr3.1:39817145-39817164 | None:intergenic | 30.0% | |
| TGACCAACATACATCAATAT+TGG | - | chr3.1:39815234-39815253 | MS.gene99907:intron | 30.0% | |
| TGTAAAACAATGGACATGTT+TGG | - | chr3.1:39817410-39817429 | MS.gene99907:intron | 30.0% | |
| TTACATAATAAGTGGTATGC+TGG | + | chr3.1:39817339-39817358 | None:intergenic | 30.0% | |
| TTACCATAGCAATCAAAAGT+AGG | + | chr3.1:39816216-39816235 | None:intergenic | 30.0% | |
| TTGATCAAATAACTAGTTGG+TGG | - | chr3.1:39815567-39815586 | MS.gene99907:intron | 30.0% | |
| ! | ATAGCAGAAAAAGTGTAAAC+TGG | + | chr3.1:39818381-39818400 | None:intergenic | 30.0% |
| ! | ATTGTTTTCATGTTTTGTCC+AGG | + | chr3.1:39816023-39816042 | None:intergenic | 30.0% |
| ! | CAGTTACTTTCTGAAAAAAC+AGG | + | chr3.1:39818316-39818335 | None:intergenic | 30.0% |
| ! | GATTTTCTGTCTCTCTTTAT+TGG | - | chr3.1:39817274-39817293 | MS.gene99907:CDS | 30.0% |
| ! | TTAGGCTAGACTAAGTTTTA+AGG | - | chr3.1:39816175-39816194 | MS.gene99907:intron | 30.0% |
| ! | TTTTTACACTCGCGAAAATT+AGG | + | chr3.1:39814539-39814558 | None:intergenic | 30.0% |
| !! | AAACCTACTTTTGATTGCTA+TGG | - | chr3.1:39816210-39816229 | MS.gene99907:intron | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | - | chr3.1:39817461-39817480 | MS.gene99907:intron | 30.0% |
| !! | ATGTCTGATTCGAAGTATTT+TGG | - | chr3.1:39814627-39814646 | MS.gene99907:intron | 30.0% |
| !! | CAGTTGAGTCATTTTATTGT+TGG | + | chr3.1:39815190-39815209 | None:intergenic | 30.0% |
| !! | CTGTTTGATTTGCATGAAAT+TGG | - | chr3.1:39814273-39814292 | MS.gene99907:intron | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | - | chr3.1:39817462-39817481 | MS.gene99907:intron | 30.0% |
| !!! | GAGATCTTTATTTTTGGTGA+AGG | - | chr3.1:39817145-39817164 | MS.gene99907:intron | 30.0% |
| !!! | GATAGACATGATTTTCAAGT+TGG | + | chr3.1:39818442-39818461 | None:intergenic | 30.0% |
| AAAATCTAAAGAGGGTCCTA+TGG | + | chr3.1:39817260-39817279 | None:intergenic | 35.0% | |
| AACAACCTCTTGTGTAAAAC+AGG | + | chr3.1:39817802-39817821 | None:intergenic | 35.0% | |
| AACAATGGACATGTTTGGAT+TGG | - | chr3.1:39817415-39817434 | MS.gene99907:intron | 35.0% | |
| ACAACCTCTTGTGTAAAACA+GGG | + | chr3.1:39817801-39817820 | None:intergenic | 35.0% | |
| ACTAAAGTAGACAAACACAC+TGG | - | chr3.1:39814850-39814869 | MS.gene99907:intron | 35.0% | |
| AGCTATTAGCAATGAAGCAT+TGG | + | chr3.1:39815897-39815916 | None:intergenic | 35.0% | |
| ATTGTTCAGAATTCTGGATC+AGG | - | chr3.1:39815079-39815098 | MS.gene99907:intron | 35.0% | |
| CAACATCACAAGAAAAATGG+AGG | + | chr3.1:39818064-39818083 | None:intergenic | 35.0% | |
| CAGCAACATCACAAGAAAAA+TGG | + | chr3.1:39818067-39818086 | None:intergenic | 35.0% | |
| CTATACAGTTCCTGTGAAAT+CGG | - | chr3.1:39817955-39817974 | MS.gene99907:intron | 35.0% | |
| CTTCATTGCTAATAGCTGAT+AGG | - | chr3.1:39815900-39815919 | MS.gene99907:CDS | 35.0% | |
| GAAAAGCTGAAAAACCAGTT+TGG | - | chr3.1:39815589-39815608 | MS.gene99907:intron | 35.0% | |
| GAGAAAGAAGTAGAATAGCT+TGG | - | chr3.1:39815135-39815154 | MS.gene99907:intron | 35.0% | |
| GAGAGACAGAAAATCTAAAG+AGG | + | chr3.1:39817269-39817288 | None:intergenic | 35.0% | |
| GATATAAATGAATGGCAGTG+TGG | - | chr3.1:39815411-39815430 | MS.gene99907:intron | 35.0% | |
| TATTTGCAAGTGAAAGTTGG+AGG | - | chr3.1:39818398-39818417 | MS.gene99907:CDS | 35.0% | |
| TGCTAACTATTTCCTTGAGA+AGG | - | chr3.1:39815929-39815948 | MS.gene99907:CDS | 35.0% | |
| TTAAAACTTGCAAGACGATG+CGG | + | chr3.1:39816145-39816164 | None:intergenic | 35.0% | |
| TTCTAGATCAATACAGGATG+TGG | + | chr3.1:39816258-39816277 | None:intergenic | 35.0% | |
| ! | ATAATATCTCAAGAAGGTGC+AGG | - | chr3.1:39815334-39815353 | MS.gene99907:intron | 35.0% |
| ! | ATGCCTTCAATCTGAAGTAT+CGG | + | chr3.1:39815755-39815774 | None:intergenic | 35.0% |
| ! | CATTTTTCTTGTGATGTTGC+TGG | - | chr3.1:39818065-39818084 | MS.gene99907:intron | 35.0% |
| ! | CTTTAAGGAAAAACACCTGT+TGG | - | chr3.1:39816290-39816309 | MS.gene99907:intron | 35.0% |
| ! | GTAGCGGAATTTGAATAAAG+TGG | - | chr3.1:39817027-39817046 | MS.gene99907:CDS | 35.0% |
| ! | TGCTATTTGCAAGTGAAAGT+TGG | - | chr3.1:39818395-39818414 | MS.gene99907:CDS | 35.0% |
| !! | AGAAAGTGGTGTTGCTTTAA+GGG | + | chr3.1:39816119-39816138 | None:intergenic | 35.0% |
| !! | AGTTGTTTTCCAGTTAACGA+GGG | - | chr3.1:39816645-39816664 | MS.gene99907:intron | 35.0% |
| !! | TAGAAAGTGGTGTTGCTTTA+AGG | + | chr3.1:39816120-39816139 | None:intergenic | 35.0% |
| !! | TAGTTGTTTTCCAGTTAACG+AGG | - | chr3.1:39816644-39816663 | MS.gene99907:intron | 35.0% |
| !!! | GCACTTTGATTTTTTTGACC+CGG | + | chr3.1:39816499-39816518 | None:intergenic | 35.0% |
| !!! | TGATTTTCAAGTTGGCTATG+TGG | + | chr3.1:39818434-39818453 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTTGGGCGCAAC+TGG | + | chr3.1:39817872-39817891 | None:intergenic | 35.0% |
| AAGGCATGTTTGACATGTGT+CGG | - | chr3.1:39815768-39815787 | MS.gene99907:intron | 40.0% | |
| AATGTAGCTACATAGGTCAG+TGG | - | chr3.1:39814927-39814946 | MS.gene99907:intron | 40.0% | |
| ACACAGGCCCAATATCAAAA+AGG | - | chr3.1:39817695-39817714 | MS.gene99907:intron | 40.0% | |
| ACACCTGTTGGAGTTATTTG+CGG | - | chr3.1:39816302-39816321 | MS.gene99907:intron | 40.0% | |
| ATGTAGATTCAGATGCTGCA+AGG | - | chr3.1:39814591-39814610 | MS.gene99907:intron | 40.0% | |
| ATGTCAAATAGTGGCTAGAG+CGG | - | chr3.1:39816987-39817006 | MS.gene99907:CDS | 40.0% | |
| ATTGGAGTTGTGTAGTGACT+TGG | - | chr3.1:39814312-39814331 | MS.gene99907:intron | 40.0% | |
| CAATATCAAAAAGGGCAACC+CGG | - | chr3.1:39817704-39817723 | MS.gene99907:intron | 40.0% | |
| CACAGGCCCAATATCAAAAA+GGG | - | chr3.1:39817696-39817715 | MS.gene99907:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr3.1:39817770-39817789 | None:intergenic | 40.0% | |
| CTAAGCTTCAAAGCTGATAG+TGG | - | chr3.1:39815721-39815740 | MS.gene99907:intron | 40.0% | |
| CTATTGTAACGGTTCCAACA+AGG | - | chr3.1:39818169-39818188 | MS.gene99907:intron | 40.0% | |
| CTCTTGTGTAAAACAGGGTA+AGG | + | chr3.1:39817796-39817815 | None:intergenic | 40.0% | |
| CTTACATCATCATCAGTGTG+TGG | + | chr3.1:39814013-39814032 | None:intergenic | 40.0% | |
| GTTGAATCCAGAAAGAAAGC+CGG | - | chr3.1:39816424-39816443 | MS.gene99907:intron | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | + | chr3.1:39817845-39817864 | None:intergenic | 40.0% | |
| TCAAATTCCGCTACACAACA+GGG | + | chr3.1:39817021-39817040 | None:intergenic | 40.0% | |
| TTACCGCAAATAACTCCAAC+AGG | + | chr3.1:39816308-39816327 | None:intergenic | 40.0% | |
| TTCAAATTCCGCTACACAAC+AGG | + | chr3.1:39817022-39817041 | None:intergenic | 40.0% | |
| TTGCAGCATCTGAATCTACA+TGG | + | chr3.1:39814592-39814611 | None:intergenic | 40.0% | |
| TTTCGGTAGATTTCCCTAGT+CGG | - | chr3.1:39816375-39816394 | MS.gene99907:intron | 40.0% | |
| TTTGCAGCTTATAGCACAAG+CGG | + | chr3.1:39817661-39817680 | None:intergenic | 40.0% | |
| ! | AACAGGTTGAGAGCTTCTAA+AGG | + | chr3.1:39818299-39818318 | None:intergenic | 40.0% |
| ! | ACAGGTTGAGAGCTTCTAAA+GGG | + | chr3.1:39818298-39818317 | None:intergenic | 40.0% |
| ! | ATATGTGAGGTGTGTGCTTT+TGG | - | chr3.1:39816549-39816568 | MS.gene99907:intron | 40.0% |
| ! | CTTACCCTGTTTTACACAAG+AGG | - | chr3.1:39817794-39817813 | MS.gene99907:intron | 40.0% |
| ! | CTTGTGCTTTTCTTGCTTGT+CGG | - | chr3.1:39815030-39815049 | MS.gene99907:intron | 40.0% |
| ! | CTTTTCTTGCTTGTCGGAAT+TGG | - | chr3.1:39815036-39815055 | MS.gene99907:intron | 40.0% |
| ! | GGGTTGCCCTTTTTGATATT+GGG | + | chr3.1:39817705-39817724 | None:intergenic | 40.0% |
| ! | GGTTTGGTTTCAACGATTTG+TGG | - | chr3.1:39813955-39813974 | MS.gene99907:CDS | 40.0% |
| ! | TGGAAAACAACTATCGGCTA+TGG | + | chr3.1:39816637-39816656 | None:intergenic | 40.0% |
| ! | TGGTGTTCTTGTTGCTTACA+AGG | - | chr3.1:39813975-39813994 | MS.gene99907:CDS | 40.0% |
| ! | TTACACAAGAGGTTGTTTCC+AGG | - | chr3.1:39817805-39817824 | MS.gene99907:CDS | 40.0% |
| ! | TTTTTGATATTGGGCCTGTG+TGG | + | chr3.1:39817696-39817715 | None:intergenic | 40.0% |
| !! | TCAAAGCTGATAGTGGATGA+AGG | - | chr3.1:39815728-39815747 | MS.gene99907:intron | 40.0% |
| !! | TTAGCAATGAAGCATTGGCA+CGG | + | chr3.1:39815892-39815911 | None:intergenic | 40.0% |
| AACACACTTGAGTCATGTCC+TGG | - | chr3.1:39816002-39816021 | MS.gene99907:intron | 45.0% | |
| ACGCCTTCAATCAGAACTGT+CGG | - | chr3.1:39814973-39814992 | MS.gene99907:intron | 45.0% | |
| AGACGATGCGGAATAGAAAG+TGG | + | chr3.1:39816133-39816152 | None:intergenic | 45.0% | |
| AGCTTGGAAGATCGTTCAAG+AGG | - | chr3.1:39815151-39815170 | MS.gene99907:intron | 45.0% | |
| CACATACATCTGCTAAGCAC+CGG | + | chr3.1:39816446-39816465 | None:intergenic | 45.0% | |
| CTACCTCCGTTCTTAACCAT+AGG | - | chr3.1:39817241-39817260 | MS.gene99907:CDS | 45.0% | |
| CTTGCTTGTCGGAATTGGTA+TGG | - | chr3.1:39815041-39815060 | MS.gene99907:intron | 45.0% | |
| GAGCTCAGAAAAGTCCAAGA+TGG | + | chr3.1:39815957-39815976 | None:intergenic | 45.0% | |
| GAGGGTCCTATGGTTAAGAA+CGG | + | chr3.1:39817250-39817269 | None:intergenic | 45.0% | |
| GCAGTATTTGACGCCATTTG+TGG | - | chr3.1:39815299-39815318 | MS.gene99907:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr3.1:39817771-39817790 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr3.1:39817774-39817793 | None:intergenic | 45.0% | |
| GGACCGATACTTCAGATTGA+AGG | - | chr3.1:39815749-39815768 | MS.gene99907:intron | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | chr3.1:39817839-39817858 | None:intergenic | 45.0% | |
| GTGGTATATTCTGCGATCTG+CGG | - | chr3.1:39817046-39817065 | MS.gene99907:CDS | 45.0% | |
| GTTATAGCCCTGTTGTGTAG+CGG | - | chr3.1:39817011-39817030 | MS.gene99907:CDS | 45.0% | |
| TACAAGTGTCAGTGTCGTGT+AGG | + | chr3.1:39815795-39815814 | None:intergenic | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | chr3.1:39817838-39817857 | None:intergenic | 45.0% | |
| TCCAAGATGGTACCTTCTCA+AGG | + | chr3.1:39815944-39815963 | None:intergenic | 45.0% | |
| TGAAAGTTGGAGGAGGAAAG+CGG | - | chr3.1:39818408-39818427 | MS.gene99907:CDS | 45.0% | |
| TTGCAAGTGAAAGTTGGAGG+AGG | - | chr3.1:39818401-39818420 | MS.gene99907:CDS | 45.0% | |
| ! | ACAAGTGCAACCGATTTCAC+AGG | + | chr3.1:39817968-39817987 | None:intergenic | 45.0% |
| ! | CGGGTTGCCCTTTTTGATAT+TGG | + | chr3.1:39817706-39817725 | None:intergenic | 45.0% |
| ! | TTATTTCTTGCTGCAGCAGC+AGG | + | chr3.1:39816525-39816544 | None:intergenic | 45.0% |
| !! | TCCTTGAGAAGGTACCATCT+TGG | - | chr3.1:39815940-39815959 | MS.gene99907:CDS | 45.0% |
| !!! | TGATGGCTTCTTTTTTCGGC+CGG | + | chr3.1:39818259-39818278 | None:intergenic | 45.0% |
| !! | AATCAAAATAAAAATTTAAA+AGG | + | chr3.1:39817303-39817322 | None:intergenic | 5.0% |
| ATTCTGCGATCTGCGGTTGA+TGG | - | chr3.1:39817053-39817072 | MS.gene99907:CDS | 50.0% | |
| ATTCTGGATCAGGAGCAGAG+TGG | - | chr3.1:39815089-39815108 | MS.gene99907:intron | 50.0% | |
| CATATGCAGGGTTCGGGAAA+GGG | - | chr3.1:39817743-39817762 | MS.gene99907:intron | 50.0% | |
| CGGTGCTTAGCAGATGTATG+TGG | - | chr3.1:39816444-39816463 | MS.gene99907:intron | 50.0% | |
| GGTCCTATGGTTAAGAACGG+AGG | + | chr3.1:39817247-39817266 | None:intergenic | 50.0% | |
| TCAAATTACCCTGCGTCCTC+TGG | + | chr3.1:39816842-39816861 | None:intergenic | 50.0% | |
| TGGCGATCTTATTATCGCCG+TGG | - | chr3.1:39814764-39814783 | MS.gene99907:intron | 50.0% | |
| TTTCCCGAACCCTGCATATG+CGG | + | chr3.1:39817743-39817762 | None:intergenic | 50.0% | |
| ! | GCACCGACAGTTCTGATTGA+AGG | + | chr3.1:39814979-39814998 | None:intergenic | 50.0% |
| ! | GTTCTGATTGAAGGCGTGTC+AGG | + | chr3.1:39814970-39814989 | None:intergenic | 50.0% |
| !! | CTAAGCACCGGCTTTCTTTC+TGG | + | chr3.1:39816434-39816453 | None:intergenic | 50.0% |
| !! | TGAAGCATTGGCACGGACAT+TGG | + | chr3.1:39815885-39815904 | None:intergenic | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr3.1:39817826-39817845 | None:intergenic | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | - | chr3.1:39817730-39817749 | MS.gene99907:intron | 55.0% | |
| CGTGGAAAGCCTTTCTCCAG+AGG | - | chr3.1:39816823-39816842 | MS.gene99907:intron | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | - | chr3.1:39817731-39817750 | MS.gene99907:intron | 55.0% | |
| GCATATGCAGGGTTCGGGAA+AGG | - | chr3.1:39817742-39817761 | MS.gene99907:intron | 55.0% | |
| TGTGATGCTCACAGCTGCAC+TGG | - | chr3.1:39816799-39816818 | MS.gene99907:intron | 55.0% | |
| TTCCCGAACCCTGCATATGC+GGG | + | chr3.1:39817742-39817761 | None:intergenic | 55.0% | |
| AGCCTTTCTCCAGAGGACGC+AGG | - | chr3.1:39816830-39816849 | MS.gene99907:intron | 60.0% | |
| CGGGAAAGGGTCCCACCATT+TGG | - | chr3.1:39817756-39817775 | MS.gene99907:intron | 60.0% | |
| CTCCCGCATATGCAGGGTTC+GGG | - | chr3.1:39817737-39817756 | MS.gene99907:intron | 60.0% | |
| CTGAGGCGTGTCTCACAAGC+CGG | - | chr3.1:39818237-39818256 | MS.gene99907:intron | 60.0% | |
| GCCTTTCTCCAGAGGACGCA+GGG | - | chr3.1:39816831-39816850 | MS.gene99907:intron | 60.0% | |
| GCTCCCGCATATGCAGGGTT+CGG | - | chr3.1:39817736-39817755 | MS.gene99907:intron | 60.0% | |
| GCTGCAGGACCCTCGTTAAC+TGG | + | chr3.1:39816657-39816676 | None:intergenic | 60.0% | |
| ! | ACCCTGCGTCCTCTGGAGAA+AGG | + | chr3.1:39816835-39816854 | None:intergenic | 60.0% |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | + | chr3.1:39817726-39817745 | None:intergenic | 60.0% |
| GCTCACAGCTGCACTGGACG+TGG | - | chr3.1:39816805-39816824 | MS.gene99907:intron | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | + | chr3.1:39817725-39817744 | None:intergenic | 65.0% |
| ACGAGGGTCCTGCAGCGAGC+CGG | - | chr3.1:39816661-39816680 | MS.gene99907:intron | 70.0% | |
| ! | CCTGCAGCGAGCCGGCTTCA+TGG | - | chr3.1:39816669-39816688 | MS.gene99907:intron | 70.0% |
| !! | CCATGAAGCCGGCTCGCTGC+AGG | + | chr3.1:39816672-39816691 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 39813941 | 39818472 | 39813941 | ID=MS.gene99907 |
| chr3.1 | mRNA | 39813941 | 39818472 | 39813941 | ID=MS.gene99907.t1;Parent=MS.gene99907 |
| chr3.1 | exon | 39818386 | 39818472 | 39818386 | ID=MS.gene99907.t1.exon1;Parent=MS.gene99907.t1 |
| chr3.1 | CDS | 39818386 | 39818472 | 39818386 | ID=cds.MS.gene99907.t1;Parent=MS.gene99907.t1 |
| chr3.1 | exon | 39817801 | 39817826 | 39817801 | ID=MS.gene99907.t1.exon2;Parent=MS.gene99907.t1 |
| chr3.1 | CDS | 39817801 | 39817826 | 39817801 | ID=cds.MS.gene99907.t1;Parent=MS.gene99907.t1 |
| chr3.1 | exon | 39817241 | 39817325 | 39817241 | ID=MS.gene99907.t1.exon3;Parent=MS.gene99907.t1 |
| chr3.1 | CDS | 39817241 | 39817325 | 39817241 | ID=cds.MS.gene99907.t1;Parent=MS.gene99907.t1 |
| chr3.1 | exon | 39816901 | 39817110 | 39816901 | ID=MS.gene99907.t1.exon4;Parent=MS.gene99907.t1 |
| chr3.1 | CDS | 39816901 | 39817110 | 39816901 | ID=cds.MS.gene99907.t1;Parent=MS.gene99907.t1 |
| chr3.1 | exon | 39815856 | 39815978 | 39815856 | ID=MS.gene99907.t1.exon5;Parent=MS.gene99907.t1 |
| chr3.1 | CDS | 39815856 | 39815978 | 39815856 | ID=cds.MS.gene99907.t1;Parent=MS.gene99907.t1 |
| chr3.1 | exon | 39813941 | 39814201 | 39813941 | ID=MS.gene99907.t1.exon6;Parent=MS.gene99907.t1 |
| chr3.1 | CDS | 39813941 | 39814201 | 39813941 | ID=cds.MS.gene99907.t1;Parent=MS.gene99907.t1 |
| Gene Sequence |
| Protein sequence |
