Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99976.t1 | AET03071.1 | 86.4 | 154 | 19 | 2 | 1 | 152 | 1 | 154 | 2.00E-65 | 258.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99976.t1 | O48686 | 53.6 | 84 | 39 | 0 | 8 | 91 | 8 | 91 | 1.4e-19 | 97.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99976.t1 | G7LEM6 | 86.4 | 154 | 19 | 2 | 1 | 152 | 1 | 154 | 1.5e-65 | 258.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene99976.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99976.t1 | MTR_8g062350 | 86.364 | 154 | 19 | 2 | 1 | 152 | 1 | 154 | 1.95e-91 | 264 |
MS.gene99976.t1 | MTR_5g036670 | 54.023 | 87 | 40 | 0 | 4 | 90 | 33 | 119 | 2.10e-27 | 107 |
MS.gene99976.t1 | MTR_8g062700 | 54.118 | 85 | 39 | 0 | 6 | 90 | 34 | 118 | 1.01e-25 | 102 |
MS.gene99976.t1 | MTR_8g062700 | 54.118 | 85 | 39 | 0 | 6 | 90 | 34 | 118 | 1.02e-25 | 102 |
MS.gene99976.t1 | MTR_6g008970 | 51.111 | 90 | 41 | 1 | 2 | 91 | 54 | 140 | 6.56e-24 | 97.1 |
MS.gene99976.t1 | MTR_6g008995 | 51.250 | 80 | 39 | 0 | 8 | 87 | 31 | 110 | 7.02e-22 | 90.9 |
MS.gene99976.t1 | MTR_1g105955 | 51.389 | 72 | 35 | 0 | 7 | 78 | 9 | 80 | 1.67e-18 | 78.2 |
MS.gene99976.t1 | MTR_1g105955 | 43.210 | 81 | 46 | 0 | 13 | 93 | 94 | 174 | 2.06e-12 | 62.0 |
MS.gene99976.t1 | MTR_1g105960 | 46.667 | 75 | 40 | 0 | 15 | 89 | 2 | 76 | 3.75e-18 | 75.1 |
MS.gene99976.t1 | MTR_3g006105 | 42.202 | 109 | 56 | 3 | 8 | 109 | 2 | 110 | 3.25e-17 | 74.7 |
MS.gene99976.t1 | MTR_3g006105 | 44.872 | 78 | 42 | 1 | 5 | 81 | 90 | 167 | 2.04e-12 | 62.0 |
MS.gene99976.t1 | MTR_3g006125 | 49.383 | 81 | 40 | 1 | 5 | 84 | 171 | 251 | 4.05e-17 | 75.9 |
MS.gene99976.t1 | MTR_3g006125 | 42.991 | 107 | 54 | 2 | 8 | 107 | 83 | 189 | 1.74e-16 | 74.3 |
MS.gene99976.t1 | MTR_3g006185 | 50.649 | 77 | 37 | 1 | 8 | 83 | 2 | 78 | 4.30e-16 | 71.6 |
MS.gene99976.t1 | MTR_3g006185 | 45.556 | 90 | 41 | 2 | 7 | 95 | 91 | 173 | 2.57e-15 | 69.7 |
MS.gene99976.t1 | MTR_3g006150 | 50.000 | 74 | 36 | 1 | 7 | 79 | 83 | 156 | 4.53e-16 | 71.2 |
MS.gene99976.t1 | MTR_3g006150 | 37.615 | 109 | 59 | 3 | 8 | 114 | 2 | 103 | 1.46e-12 | 62.0 |
MS.gene99976.t1 | MTR_1g104960 | 38.636 | 88 | 54 | 0 | 5 | 92 | 90 | 177 | 8.99e-16 | 70.9 |
MS.gene99976.t1 | MTR_1g104960 | 40.244 | 82 | 47 | 1 | 13 | 92 | 12 | 93 | 3.77e-12 | 61.2 |
MS.gene99976.t1 | MTR_3g006065 | 48.649 | 74 | 37 | 1 | 7 | 79 | 83 | 156 | 3.10e-15 | 69.7 |
MS.gene99976.t1 | MTR_3g006065 | 37.624 | 101 | 59 | 2 | 8 | 107 | 2 | 99 | 7.17e-11 | 58.2 |
MS.gene99976.t1 | MTR_1g104940 | 40.449 | 89 | 53 | 0 | 1 | 89 | 1 | 89 | 3.89e-15 | 67.8 |
MS.gene99976.t1 | MTR_4g133300 | 40.909 | 88 | 50 | 1 | 9 | 94 | 84 | 171 | 9.27e-15 | 69.3 |
MS.gene99976.t1 | MTR_4g133300 | 45.455 | 77 | 40 | 1 | 7 | 83 | 167 | 241 | 1.91e-12 | 63.2 |
MS.gene99976.t1 | MTR_4g133300 | 43.750 | 80 | 42 | 1 | 13 | 92 | 11 | 87 | 4.90e-11 | 59.3 |
MS.gene99976.t1 | MTR_1g105010 | 36.842 | 114 | 61 | 3 | 6 | 113 | 8 | 116 | 1.20e-14 | 66.2 |
MS.gene99976.t1 | MTR_7g013410 | 30.303 | 99 | 66 | 1 | 18 | 116 | 2 | 97 | 3.65e-13 | 63.2 |
MS.gene99976.t1 | MTR_4g133470 | 38.636 | 88 | 52 | 1 | 9 | 94 | 84 | 171 | 4.13e-13 | 65.1 |
MS.gene99976.t1 | MTR_4g133470 | 44.156 | 77 | 41 | 1 | 7 | 83 | 167 | 241 | 9.81e-12 | 61.2 |
MS.gene99976.t1 | MTR_4g133470 | 43.750 | 80 | 42 | 1 | 13 | 92 | 11 | 87 | 3.18e-11 | 59.7 |
MS.gene99976.t1 | MTR_6g008995 | 51.923 | 52 | 25 | 0 | 36 | 87 | 2 | 53 | 5.55e-13 | 65.5 |
MS.gene99976.t1 | MTR_1g091047 | 44.776 | 67 | 36 | 1 | 13 | 78 | 8 | 74 | 1.06e-11 | 57.4 |
MS.gene99976.t1 | MTR_7g013380 | 39.130 | 92 | 47 | 2 | 14 | 96 | 185 | 276 | 2.42e-11 | 60.5 |
MS.gene99976.t1 | MTR_2g097830 | 41.250 | 80 | 44 | 1 | 13 | 92 | 69 | 145 | 4.74e-11 | 58.2 |
MS.gene99976.t1 | MTR_1g104937 | 38.961 | 77 | 45 | 1 | 15 | 89 | 13 | 89 | 5.00e-11 | 56.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99976.t1 | AT1G24190 | 50.549 | 91 | 45 | 0 | 1 | 91 | 1 | 91 | 5.13e-25 | 100 |
MS.gene99976.t1 | AT1G24190 | 50.549 | 91 | 45 | 0 | 1 | 91 | 1 | 91 | 5.98e-25 | 100 |
MS.gene99976.t1 | AT1G24190 | 50.549 | 91 | 45 | 0 | 1 | 91 | 1 | 91 | 6.10e-25 | 100 |
MS.gene99976.t1 | AT3G01320 | 50.588 | 85 | 42 | 0 | 8 | 92 | 51 | 135 | 6.54e-24 | 97.1 |
MS.gene99976.t1 | AT3G01320 | 50.588 | 85 | 42 | 0 | 8 | 92 | 51 | 135 | 7.56e-24 | 97.1 |
MS.gene99976.t1 | AT1G70060 | 47.778 | 90 | 47 | 0 | 1 | 90 | 1 | 90 | 3.80e-23 | 95.1 |
MS.gene99976.t1 | AT1G70060 | 47.778 | 90 | 47 | 0 | 1 | 90 | 1 | 90 | 3.80e-23 | 95.1 |
MS.gene99976.t1 | AT1G59890 | 48.780 | 82 | 42 | 0 | 14 | 95 | 45 | 126 | 2.31e-22 | 92.8 |
MS.gene99976.t1 | AT1G59890 | 48.780 | 82 | 42 | 0 | 14 | 95 | 45 | 126 | 2.43e-22 | 92.8 |
MS.gene99976.t1 | AT1G59890 | 48.780 | 82 | 42 | 0 | 14 | 95 | 45 | 126 | 2.45e-22 | 92.4 |
MS.gene99976.t1 | AT1G59890 | 48.780 | 82 | 42 | 0 | 14 | 95 | 45 | 126 | 2.70e-22 | 92.4 |
MS.gene99976.t1 | AT5G15020 | 50.000 | 80 | 40 | 0 | 8 | 87 | 46 | 125 | 7.26e-22 | 91.3 |
MS.gene99976.t1 | AT5G15020 | 50.000 | 80 | 40 | 0 | 8 | 87 | 46 | 125 | 7.77e-22 | 91.3 |
MS.gene99976.t1 | AT5G15025 | 50.633 | 79 | 39 | 0 | 10 | 88 | 43 | 121 | 1.55e-21 | 84.3 |
MS.gene99976.t1 | AT1G10450 | 47.561 | 82 | 43 | 0 | 14 | 95 | 84 | 165 | 1.00e-19 | 85.1 |
MS.gene99976.t1 | AT1G10450 | 47.561 | 82 | 43 | 0 | 14 | 95 | 33 | 114 | 1.11e-19 | 85.1 |
MS.gene99976.t1 | AT1G10450 | 47.561 | 82 | 43 | 0 | 14 | 95 | 33 | 114 | 1.11e-19 | 85.1 |
MS.gene99976.t1 | AT1G70030 | 44.706 | 85 | 47 | 0 | 3 | 87 | 11 | 95 | 1.67e-19 | 79.3 |
MS.gene99976.t1 | AT1G70030 | 44.706 | 85 | 47 | 0 | 3 | 87 | 11 | 95 | 3.73e-19 | 78.6 |
MS.gene99976.t1 | AT1G70030 | 45.122 | 82 | 45 | 0 | 6 | 87 | 3 | 84 | 1.26e-18 | 77.8 |
MS.gene99976.t1 | AT5G15040 | 45.946 | 74 | 40 | 0 | 17 | 90 | 6 | 79 | 8.89e-18 | 73.6 |
MS.gene99976.t1 | AT5G15040 | 45.946 | 74 | 40 | 0 | 17 | 90 | 6 | 79 | 8.89e-18 | 73.6 |
MS.gene99976.t1 | AT5G15040 | 45.946 | 74 | 40 | 0 | 17 | 90 | 6 | 79 | 8.89e-18 | 73.6 |
MS.gene99976.t1 | AT1G24200 | 44.944 | 89 | 49 | 0 | 1 | 89 | 1 | 89 | 5.25e-17 | 74.3 |
MS.gene99976.t1 | AT1G27220 | 42.105 | 95 | 48 | 2 | 3 | 90 | 2 | 96 | 5.66e-17 | 73.9 |
MS.gene99976.t1 | AT4G12020 | 43.820 | 89 | 49 | 1 | 10 | 98 | 304 | 391 | 1.67e-16 | 75.9 |
MS.gene99976.t1 | AT4G12020 | 43.820 | 89 | 49 | 1 | 10 | 98 | 304 | 391 | 1.67e-16 | 75.9 |
MS.gene99976.t1 | AT4G12020 | 43.820 | 89 | 49 | 1 | 10 | 98 | 304 | 391 | 1.74e-16 | 75.9 |
MS.gene99976.t1 | AT4G12020 | 43.820 | 89 | 49 | 1 | 10 | 98 | 304 | 391 | 1.77e-16 | 75.9 |
MS.gene99976.t1 | AT4G12020 | 43.820 | 89 | 49 | 1 | 10 | 98 | 304 | 391 | 1.77e-16 | 75.9 |
MS.gene99976.t1 | AT4G12020 | 43.820 | 89 | 49 | 1 | 10 | 98 | 304 | 391 | 1.79e-16 | 75.9 |
MS.gene99976.t1 | AT4G12020 | 43.820 | 89 | 49 | 1 | 10 | 98 | 304 | 391 | 1.83e-16 | 75.9 |
MS.gene99976.t1 | AT4G12020 | 43.820 | 89 | 49 | 1 | 10 | 98 | 304 | 391 | 1.84e-16 | 75.9 |
MS.gene99976.t1 | AT4G12020 | 43.820 | 89 | 49 | 1 | 10 | 98 | 304 | 391 | 1.87e-16 | 75.9 |
MS.gene99976.t1 | AT4G12020 | 43.820 | 89 | 49 | 1 | 10 | 98 | 304 | 391 | 1.93e-16 | 75.9 |
MS.gene99976.t1 | AT4G12020 | 43.820 | 89 | 49 | 1 | 10 | 98 | 237 | 324 | 2.07e-16 | 75.5 |
MS.gene99976.t1 | AT1G27250 | 42.466 | 73 | 42 | 0 | 9 | 81 | 16 | 88 | 1.66e-15 | 69.3 |
MS.gene99976.t1 | AT1G24210 | 38.462 | 78 | 43 | 1 | 10 | 87 | 10 | 82 | 4.92e-13 | 63.2 |
MS.gene99976.t1 | AT1G27260 | 41.429 | 70 | 41 | 0 | 15 | 84 | 4 | 73 | 5.39e-13 | 64.3 |
MS.gene99976.t1 | AT5G35610 | 38.144 | 97 | 59 | 1 | 6 | 102 | 2 | 97 | 4.67e-12 | 60.5 |
MS.gene99976.t1 | AT1G23810 | 42.188 | 64 | 37 | 0 | 11 | 74 | 106 | 169 | 2.45e-11 | 60.1 |
MS.gene99976.t1 | AT1G24250 | 42.188 | 64 | 37 | 0 | 11 | 74 | 117 | 180 | 6.71e-11 | 58.9 |
Find 36 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTCCTCTTCTTCTGAAAT+TGG | 0.127785 | 8.4:-39205305 | None:intergenic |
GTTCCTCTTCTTCTGAAATT+GGG | 0.316802 | 8.4:-39205304 | None:intergenic |
TGAGGAGATTGTGCATTTAG+AGG | 0.373460 | 8.4:-39205383 | None:intergenic |
TGATGCCTTTGCATATCTTA+AGG | 0.401654 | 8.4:+39204819 | MS.gene99976:CDS |
GAGGTGAAGGAGTTGTTTAA+AGG | 0.403782 | 8.4:+39205227 | MS.gene99976:CDS |
ACAAACTCATTAGCATGTTC+AGG | 0.410073 | 8.4:-39205464 | None:intergenic |
TGAAGGATTACAAAGATAAC+AGG | 0.410405 | 8.4:+39204899 | MS.gene99976:CDS |
AGGACATAATGATCTGATTA+CGG | 0.410966 | 8.4:+39205247 | MS.gene99976:CDS |
TCACATTCATCAAGAATCCT+AGG | 0.417941 | 8.4:-39205332 | None:intergenic |
CCAAATGGTTCATTCCTTGA+TGG | 0.420352 | 8.4:-39205437 | None:intergenic |
AACATGCTAATGAGTTTGTC+AGG | 0.450168 | 8.4:+39205468 | MS.gene99976:CDS |
GGACATAATGATCTGATTAC+GGG | 0.453739 | 8.4:+39205248 | MS.gene99976:CDS |
CCATCAAGGAATGAACCATT+TGG | 0.482429 | 8.4:+39205437 | MS.gene99976:CDS |
CAATCTCCTCAGATGATGCT+TGG | 0.483286 | 8.4:+39205395 | MS.gene99976:CDS |
TGAGTTTGTCAGGAAAGTTA+AGG | 0.495626 | 8.4:+39205478 | MS.gene99976:CDS |
GCATGTTCAGGTCCACCAAA+TGG | 0.497913 | 8.4:-39205452 | None:intergenic |
ATATGCAAAGGCATCATCTT+CGG | 0.504699 | 8.4:-39204812 | None:intergenic |
CACATTCATCAAGAATCCTA+GGG | 0.515183 | 8.4:-39205331 | None:intergenic |
AATCCCAATTTCAGAAGAAG+AGG | 0.528932 | 8.4:+39205301 | MS.gene99976:CDS |
CTATTGCTAATAGGTTTGGA+AGG | 0.548523 | 8.4:+39205995 | MS.gene99976:intron |
TGCATATCTTAAGGCAGTCA+AGG | 0.563220 | 8.4:+39204828 | MS.gene99976:CDS |
AGCATATCACAACTCCATCA+AGG | 0.566686 | 8.4:+39205423 | MS.gene99976:CDS |
ATGTGAAATGACAAATCCAT+TGG | 0.573688 | 8.4:+39205349 | MS.gene99976:CDS |
TCAAGGAATGAACCATTTGG+TGG | 0.574249 | 8.4:+39205440 | MS.gene99976:CDS |
TAATTACCATGACGTTGTAA+CGG | 0.588102 | 8.4:+39205205 | MS.gene99976:CDS |
TTCAACATCTTTGCACCAAG+TGG | 0.595995 | 8.4:+39205272 | MS.gene99976:CDS |
TGACGTTGTAACGGAGGTGA+AGG | 0.598498 | 8.4:+39205214 | MS.gene99976:CDS |
ACAAAGATGAGTACGAGTCA+AGG | 0.614659 | 8.4:+39204775 | None:intergenic |
GACTGCCTTAAGATATGCAA+AGG | 0.619589 | 8.4:-39204824 | None:intergenic |
TCACCTCCGTTACAACGTCA+TGG | 0.624638 | 8.4:-39205211 | None:intergenic |
ATTGGGATTTGATAACCACT+TGG | 0.631213 | 8.4:-39205287 | None:intergenic |
TTACCATGACGTTGTAACGG+AGG | 0.671678 | 8.4:+39205208 | MS.gene99976:CDS |
TCTTCTCCAAGCATCATCTG+AGG | 0.679479 | 8.4:-39205401 | None:intergenic |
ACATTCATCAAGAATCCTAG+GGG | 0.685325 | 8.4:-39205330 | None:intergenic |
AAGATGAGTACGAGTCAAGG+TGG | 0.711763 | 8.4:+39204778 | None:intergenic |
CATTCATCAAGAATCCTAGG+GGG | 0.735833 | 8.4:-39205329 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGGTAAATTATAAATAATAT+AGG | - | chr8.4:39205115-39205134 | None:intergenic | 10.0% |
!!! | AAAAAAATTTGGTTTAAATT+TGG | - | chr8.4:39205044-39205063 | None:intergenic | 10.0% |
!!! | TAATTTTTTATAAACAAATG+AGG | + | chr8.4:39205501-39205520 | MS.gene99976:intron | 10.0% |
!! | AATAGAAAAATGTAAATTAC+CGG | - | chr8.4:39205082-39205101 | None:intergenic | 15.0% |
!! | AATTAGAAACGAAAAAAATT+TGG | - | chr8.4:39205055-39205074 | None:intergenic | 15.0% |
!! | ACTTAAAGTAGATATATTAT+AGG | + | chr8.4:39205803-39205822 | MS.gene99976:intron | 15.0% |
!!! | TATTTATTTTGTTGATTTCT+AGG | + | chr8.4:39205180-39205199 | MS.gene99976:intron | 15.0% |
!!! | TTACTTTTTGAAAATAATGA+AGG | + | chr8.4:39204882-39204901 | MS.gene99976:CDS | 15.0% |
!! | GATATATTATAGGTTTGAAA+AGG | + | chr8.4:39205813-39205832 | MS.gene99976:intron | 20.0% |
!! | TTACTATTATAGTACTCTAT+TGG | - | chr8.4:39205964-39205983 | None:intergenic | 20.0% |
!! | TTCTTTATTAGAAAGAACAA+AGG | - | chr8.4:39205742-39205761 | None:intergenic | 20.0% |
!!! | AAAAGTATAAACTCTAACTA+AGG | - | chr8.4:39205531-39205550 | None:intergenic | 20.0% |
!!! | AAGATCAAGATCTTATTTAT+TGG | + | chr8.4:39205866-39205885 | MS.gene99976:intron | 20.0% |
!!! | AGATCAAGATCTTATTTATT+GGG | + | chr8.4:39205867-39205886 | MS.gene99976:intron | 20.0% |
! | TATTTATAATTTACCACGAG+AGG | + | chr8.4:39205119-39205138 | MS.gene99976:intron | 25.0% |
! | TCGCAAATAAAATTAAGATC+CGG | - | chr8.4:39205145-39205164 | None:intergenic | 25.0% |
! | TTATTAGAAAGAACAAAGGT+TGG | - | chr8.4:39205738-39205757 | None:intergenic | 25.0% |
! | TTTCTAATAAAGAAGCTACT+GGG | + | chr8.4:39205748-39205767 | MS.gene99976:intron | 25.0% |
!! | ATTATTTTCGTCCCAAATAT+TGG | - | chr8.4:39205008-39205027 | None:intergenic | 25.0% |
!! | TTCTCATTCTTAAACTTGTT+TGG | + | chr8.4:39205555-39205574 | MS.gene99976:intron | 25.0% |
!! | TTTTCGTTTCTAATTAATGC+CGG | + | chr8.4:39205060-39205079 | MS.gene99976:intron | 25.0% |
AACTCAAACATTCATCTAGT+CGG | + | chr8.4:39205895-39205914 | MS.gene99976:intron | 30.0% | |
AGGACATAATGATCTGATTA+CGG | + | chr8.4:39205247-39205266 | MS.gene99976:CDS | 30.0% | |
ATGTGAAATGACAAATCCAT+TGG | + | chr8.4:39205349-39205368 | MS.gene99976:CDS | 30.0% | |
CAATCACTTGACCAATATTT+GGG | + | chr8.4:39204994-39205013 | MS.gene99976:intron | 30.0% | |
CTTTCTAATAAAGAAGCTAC+TGG | + | chr8.4:39205747-39205766 | MS.gene99976:intron | 30.0% | |
GATTACAAAGATAACAGGTT+AGG | + | chr8.4:39204904-39204923 | MS.gene99976:intron | 30.0% | |
TAATTACCATGACGTTGTAA+CGG | + | chr8.4:39205205-39205224 | MS.gene99976:CDS | 30.0% | |
TCAATCACTTGACCAATATT+TGG | + | chr8.4:39204993-39205012 | MS.gene99976:intron | 30.0% | |
TGAAGGATTACAAAGATAAC+AGG | + | chr8.4:39204899-39204918 | MS.gene99976:CDS | 30.0% | |
TGCATTGTTCTATTGCTAAT+AGG | + | chr8.4:39205986-39206005 | MS.gene99976:intron | 30.0% | |
TGTTCTATTGCTAATAGGTT+TGG | + | chr8.4:39205991-39206010 | MS.gene99976:intron | 30.0% | |
!!! | AGAGGTTTTAATTCTTCCAA+TGG | - | chr8.4:39205368-39205387 | None:intergenic | 30.0% |
AACATGCTAATGAGTTTGTC+AGG | + | chr8.4:39205468-39205487 | MS.gene99976:CDS | 35.0% | |
AATCCCAATTTCAGAAGAAG+AGG | + | chr8.4:39205301-39205320 | MS.gene99976:CDS | 35.0% | |
ACAAACTCATTAGCATGTTC+AGG | - | chr8.4:39205467-39205486 | None:intergenic | 35.0% | |
ACATTCATCAAGAATCCTAG+GGG | - | chr8.4:39205333-39205352 | None:intergenic | 35.0% | |
CACATTCATCAAGAATCCTA+GGG | - | chr8.4:39205334-39205353 | None:intergenic | 35.0% | |
CATTGTCACCTTCTTAATGA+AGG | - | chr8.4:39205923-39205942 | None:intergenic | 35.0% | |
CTATTGCTAATAGGTTTGGA+AGG | + | chr8.4:39205995-39206014 | MS.gene99976:intron | 35.0% | |
CTTCATTAAGAAGGTGACAA+TGG | + | chr8.4:39205921-39205940 | MS.gene99976:intron | 35.0% | |
GACGTCAATTTCCTTAACTT+AGG | - | chr8.4:39205706-39205725 | None:intergenic | 35.0% | |
GCGAAGAAAAACAATAGTGA+TGG | - | chr8.4:39204958-39204977 | None:intergenic | 35.0% | |
GGACATAATGATCTGATTAC+GGG | + | chr8.4:39205248-39205267 | MS.gene99976:CDS | 35.0% | |
TCACATTCATCAAGAATCCT+AGG | - | chr8.4:39205335-39205354 | None:intergenic | 35.0% | |
TGAGTTTGTCAGGAAAGTTA+AGG | + | chr8.4:39205478-39205497 | MS.gene99976:CDS | 35.0% | |
TGATGCCTTTGCATATCTTA+AGG | + | chr8.4:39204819-39204838 | MS.gene99976:CDS | 35.0% | |
! | ATTGGGATTTGATAACCACT+TGG | - | chr8.4:39205290-39205309 | None:intergenic | 35.0% |
! | CAATAGTGATGGAAAGAATG+TGG | - | chr8.4:39204947-39204966 | None:intergenic | 35.0% |
! | CTCTATTGGTAGTAGTCTAT+TGG | - | chr8.4:39205950-39205969 | None:intergenic | 35.0% |
!! | ATATGCAAAGGCATCATCTT+CGG | - | chr8.4:39204815-39204834 | None:intergenic | 35.0% |
!! | GTTCCTCTTCTTCTGAAATT+GGG | - | chr8.4:39205307-39205326 | None:intergenic | 35.0% |
!! | TGTTCCTCTTCTTCTGAAAT+TGG | - | chr8.4:39205308-39205327 | None:intergenic | 35.0% |
AGCATATCACAACTCCATCA+AGG | + | chr8.4:39205423-39205442 | MS.gene99976:CDS | 40.0% | |
AGTCGGTACCTTCATTAAGA+AGG | + | chr8.4:39205912-39205931 | MS.gene99976:intron | 40.0% | |
CATTCATCAAGAATCCTAGG+GGG | - | chr8.4:39205332-39205351 | None:intergenic | 40.0% | |
CCAAATGGTTCATTCCTTGA+TGG | - | chr8.4:39205440-39205459 | None:intergenic | 40.0% | |
CCATCAAGGAATGAACCATT+TGG | + | chr8.4:39205437-39205456 | MS.gene99976:CDS | 40.0% | |
GACTGCCTTAAGATATGCAA+AGG | - | chr8.4:39204827-39204846 | None:intergenic | 40.0% | |
GAGGTGAAGGAGTTGTTTAA+AGG | + | chr8.4:39205227-39205246 | MS.gene99976:CDS | 40.0% | |
TATAATTTACCACGAGAGGC+CGG | + | chr8.4:39205123-39205142 | MS.gene99976:intron | 40.0% | |
TCAAGGAATGAACCATTTGG+TGG | + | chr8.4:39205440-39205459 | MS.gene99976:CDS | 40.0% | |
TGAGGAGATTGTGCATTTAG+AGG | - | chr8.4:39205386-39205405 | None:intergenic | 40.0% | |
TGCATATCTTAAGGCAGTCA+AGG | + | chr8.4:39204828-39204847 | MS.gene99976:CDS | 40.0% | |
TTCAACATCTTTGCACCAAG+TGG | + | chr8.4:39205272-39205291 | MS.gene99976:CDS | 40.0% | |
TTCCTTAACTTAGGTCCCTA+AGG | - | chr8.4:39205697-39205716 | None:intergenic | 40.0% | |
! | ATTTTCCTAAGTCACCCACT+GGG | + | chr8.4:39205582-39205601 | MS.gene99976:intron | 40.0% |
! | GGACGTTTTCAGAGAACAAA+TGG | + | chr8.4:39204849-39204868 | MS.gene99976:CDS | 40.0% |
! | GGGTAGCAAGATTAGCTATA+AGG | + | chr8.4:39205768-39205787 | MS.gene99976:intron | 40.0% |
CAATCTCCTCAGATGATGCT+TGG | + | chr8.4:39205395-39205414 | MS.gene99976:CDS | 45.0% | |
CTCCTTAGGGACCTAAGTTA+AGG | + | chr8.4:39205692-39205711 | MS.gene99976:intron | 45.0% | |
TCTTCTCCAAGCATCATCTG+AGG | - | chr8.4:39205404-39205423 | None:intergenic | 45.0% | |
TTACCATGACGTTGTAACGG+AGG | + | chr8.4:39205208-39205227 | MS.gene99976:CDS | 45.0% | |
! | CATTTTCCTAAGTCACCCAC+TGG | + | chr8.4:39205581-39205600 | MS.gene99976:intron | 45.0% |
! | TTTTCCTAAGTCACCCACTG+GGG | + | chr8.4:39205583-39205602 | MS.gene99976:intron | 45.0% |
AACTAAGGTGTACCCCCAGT+GGG | - | chr8.4:39205599-39205618 | None:intergenic | 50.0% | |
AAGAAGAGGAACAACCCCCT+AGG | + | chr8.4:39205315-39205334 | MS.gene99976:CDS | 50.0% | |
AATTAAGATCCGGCCTCTCG+TGG | - | chr8.4:39205135-39205154 | None:intergenic | 50.0% | |
GCATGTTCAGGTCCACCAAA+TGG | - | chr8.4:39205455-39205474 | None:intergenic | 50.0% | |
TAACTAAGGTGTACCCCCAG+TGG | - | chr8.4:39205600-39205619 | None:intergenic | 50.0% | |
TCACCTCCGTTACAACGTCA+TGG | - | chr8.4:39205214-39205233 | None:intergenic | 50.0% | |
TTTCCTAAGTCACCCACTGG+GGG | + | chr8.4:39205584-39205603 | MS.gene99976:intron | 50.0% | |
! | TGACGTTGTAACGGAGGTGA+AGG | + | chr8.4:39205214-39205233 | MS.gene99976:CDS | 50.0% |
GTACCCCCAGTGGGTGACTT+AGG | - | chr8.4:39205590-39205609 | None:intergenic | 60.0% | |
!! | ACCCACTGGGGGTACTCCTT+AGG | + | chr8.4:39205678-39205697 | MS.gene99976:intron | 60.0% |
!! | CCCACTGGGGGTACTCCTTA+GGG | + | chr8.4:39205679-39205698 | MS.gene99976:intron | 60.0% |
!! | CCCTAAGGAGTACCCCCAGT+GGG | - | chr8.4:39205682-39205701 | None:intergenic | 60.0% |
!! | TCCCTAAGGAGTACCCCCAG+TGG | - | chr8.4:39205683-39205702 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 39204781 | 39206031 | 39204781 | ID=MS.gene99976 |
chr8.4 | mRNA | 39204781 | 39206031 | 39204781 | ID=MS.gene99976.t1;Parent=MS.gene99976 |
chr8.4 | exon | 39204781 | 39204920 | 39204781 | ID=MS.gene99976.t1.exon1;Parent=MS.gene99976.t1 |
chr8.4 | CDS | 39204781 | 39204920 | 39204781 | ID=cds.MS.gene99976.t1;Parent=MS.gene99976.t1 |
chr8.4 | exon | 39205202 | 39205499 | 39205202 | ID=MS.gene99976.t1.exon2;Parent=MS.gene99976.t1 |
chr8.4 | CDS | 39205202 | 39205499 | 39205202 | ID=cds.MS.gene99976.t1;Parent=MS.gene99976.t1 |
chr8.4 | exon | 39206008 | 39206031 | 39206008 | ID=MS.gene99976.t1.exon3;Parent=MS.gene99976.t1 |
chr8.4 | CDS | 39206008 | 39206031 | 39206008 | ID=cds.MS.gene99976.t1;Parent=MS.gene99976.t1 |
Gene Sequence |
Protein sequence |