AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99979

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99979.t1 MTR_8g062330 91.982 449 34 1 1 449 1 447 0.0 854
MS.gene99979.t1 MTR_7g096040 74.939 407 94 6 44 449 143 542 0.0 636
MS.gene99979.t1 MTR_8g070660 32.500 120 77 2 327 442 79 198 1.66e-12 68.2
MS.gene99979.t1 MTR_8g070660 32.500 120 77 2 327 442 79 198 3.94e-12 67.8
MS.gene99979.t1 MTR_2g018270 39.785 93 53 2 347 437 85 176 9.53e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99979.t1 AT3G54610 67.168 399 122 5 51 449 179 568 0.0 566
MS.gene99979.t1 AT2G34900 35.354 99 61 2 346 442 5 102 6.27e-13 69.3
MS.gene99979.t1 AT2G34900 34.615 104 65 2 341 442 110 212 6.85e-13 70.5
MS.gene99979.t1 AT1G76380 46.269 67 35 1 361 427 165 230 6.39e-11 65.1
MS.gene99979.t1 AT1G76380 46.269 67 35 1 361 427 166 231 7.70e-11 64.7
MS.gene99979.t1 AT1G76380 46.269 67 35 1 361 427 165 230 7.89e-11 64.7

Find 107 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGTCTATAATGGTTATA+AGG 0.249320 8.4:+39264526 MS.gene99979:CDS
TGTAGCACATTTGTAATATA+TGG 0.254796 8.4:-39265372 None:intergenic
TTATAACCATTATAGACTTA+TGG 0.281569 8.4:-39264524 None:intergenic
CGCGAATGGCCGTACATATC+AGG 0.282683 8.4:-39265059 None:intergenic
AACGTACTCCTTTGGCATAT+TGG 0.307676 8.4:-39264478 None:intergenic
AGTGATGATCAACAAGTAAA+AGG 0.317455 8.4:+39264630 MS.gene99979:CDS
CTCATTGTCTTTAGATCCAT+TGG 0.327319 8.4:-39265248 None:intergenic
CGAAGGCCGAAGGGCCAGTC+TGG 0.327450 8.4:-39264119 None:intergenic
ACGTACTCCTTTGGCATATT+GGG 0.332227 8.4:-39264477 None:intergenic
TGCATTCTCAAACATTCTTC+TGG 0.343144 8.4:-39265327 None:intergenic
AACAGTTCAGCCGCTACTTC+CGG 0.350067 8.4:+39264243 MS.gene99979:CDS
ATGTCATCAACCATTCTATT+AGG 0.359040 8.4:-39265008 None:intergenic
GTTGATGCACAGAGTGTTCC+TGG 0.361168 8.4:+39265203 MS.gene99979:CDS
TCCTTGAATGGCCAAGCATC+AGG 0.365625 8.4:-39265176 None:intergenic
GGTCATGCATTTCCTTTATG+AGG 0.367710 8.4:-39265151 None:intergenic
GTTTATGTGTTCCCTCATAA+AGG 0.371915 8.4:+39265139 MS.gene99979:CDS
TGGCATATTGGGAAGTTGTC+TGG 0.378798 8.4:-39264466 None:intergenic
GTACGTTGTCCGACTTGTTA+TGG 0.380549 8.4:+39264494 MS.gene99979:CDS
CGGTTCTGTCCCCGACTTTG+TGG 0.384446 8.4:+39264263 MS.gene99979:CDS
TATGCTGATAATAATGCTAT+TGG 0.385429 8.4:+39264726 MS.gene99979:CDS
TGTCCCCGACTTTGTGGTTA+AGG 0.391230 8.4:+39264269 MS.gene99979:CDS
ATAGTTGATAAATCAGTATA+AGG 0.397900 8.4:-39264867 None:intergenic
CTCAAGAAAGAGGAAGAATC+TGG 0.399688 8.4:+39264363 MS.gene99979:CDS
TAAGTCTATAATGGTTATAA+GGG 0.403247 8.4:+39264527 MS.gene99979:CDS
CCCTGATGCTTGGCCATTCA+AGG 0.404768 8.4:+39265175 MS.gene99979:CDS
TCGCGGTTTATAGCTTTAGA+TGG 0.410507 8.4:+39265077 MS.gene99979:CDS
TAGGAACCATAAGTCTATAA+TGG 0.415215 8.4:+39264518 MS.gene99979:CDS
GATCAACAAGTAAAAGGTTA+TGG 0.418177 8.4:+39264636 MS.gene99979:CDS
TCAACCATTCTATTAGGAAT+AGG 0.419465 8.4:-39265002 None:intergenic
AAATCAGTATAAGGAAGCTT+TGG 0.423435 8.4:-39264858 None:intergenic
TTTCTTGAGATTCTCTTCCC+TGG 0.429530 8.4:-39264349 None:intergenic
TAAGAGGTGGTTACAGTGCC+AGG 0.431578 8.4:+39264331 MS.gene99979:CDS
CAGATATGTGTTTGCGCTTG+TGG 0.433930 8.4:-39264155 None:intergenic
AGGGAGCATAATCGCGTTGT+TGG 0.436622 8.4:+39264546 MS.gene99979:CDS
CACAAAGTCGGGGACAGAAC+CGG 0.441013 8.4:-39264262 None:intergenic
GGCTGAACTGTTCACAGAAC+CGG 0.441410 8.4:-39264232 None:intergenic
TCGTCCTTAACCACAAAGTC+GGG 0.441549 8.4:-39264273 None:intergenic
TGTCACAATATTGTTTATGC+TGG 0.443276 8.4:+39264942 MS.gene99979:CDS
TCGATGGGAAGGTTATATAA+AGG 0.445441 8.4:+39264797 MS.gene99979:CDS
CAGTATGCACGTGATGTAGA+TGG 0.451140 8.4:+39264684 MS.gene99979:CDS
CTGATATGTACGGCCATTCG+CGG 0.465853 8.4:+39265060 MS.gene99979:CDS
GCGAACCTCTGATTTGCATA+TGG 0.467524 8.4:-39264585 None:intergenic
GGAACACTCTGTGCATCAAC+AGG 0.468144 8.4:-39265200 None:intergenic
GGTTATATAAAGGATTATGA+TGG 0.483037 8.4:+39264807 MS.gene99979:CDS
TATTCCTATTCCTAATAGAA+TGG 0.489250 8.4:+39264998 MS.gene99979:CDS
AGTCGGACAACGTACTCCTT+TGG 0.490846 8.4:-39264486 None:intergenic
GCATCAACAGGTTCCTTGAA+TGG 0.491570 8.4:-39265188 None:intergenic
TCTTCAATGCACAACTTCAC+CGG 0.497393 8.4:+39264213 MS.gene99979:CDS
ATGCTATCAACGAAACCATA+TGG 0.498728 8.4:-39264428 None:intergenic
CATCCAGCCTCTTTCAAACC+AGG 0.501793 8.4:-39265032 None:intergenic
ATCCCTGGTTTGAAAGAGGC+TGG 0.505140 8.4:+39265029 MS.gene99979:CDS
TGACGGTGTTGATGACCATA+TGG 0.509355 8.4:+39264413 MS.gene99979:CDS
TTCAGTGAATATATTTGTTG+AGG 0.512080 8.4:-39264298 None:intergenic
GAGCATAATCGCGTTGTTGG+AGG 0.514705 8.4:+39264549 MS.gene99979:CDS
AAAGACAATGAGTGAGAGGC+TGG 0.516667 8.4:+39265259 MS.gene99979:CDS
TATGAGGGAACACATAAACT+TGG 0.518094 8.4:-39265135 None:intergenic
TATGATCCGTCGGCAAAGAC+AGG 0.524541 8.4:+39264887 MS.gene99979:CDS
GTGACAATGCTCCTCCAGTC+CGG 0.528618 8.4:+39265422 MS.gene99979:CDS
GTTATATAAAGGATTATGAT+GGG 0.531624 8.4:+39264808 MS.gene99979:CDS
GAAGAAGTGGCGAAGGCCGA+AGG 0.533161 8.4:-39264129 None:intergenic
TTTCAGAAGAGATCAGAAGC+TGG 0.533279 8.4:+39264972 MS.gene99979:CDS
GGAATCCCAGACTGGCCCTT+CGG 0.533805 8.4:+39264113 MS.gene99979:CDS
GGAAGAGAATCTCAAGAAAG+AGG 0.533991 8.4:+39264353 MS.gene99979:CDS
GTCATGCATTTCCTTTATGA+GGG 0.534322 8.4:-39265150 None:intergenic
CTGGTTTGAAAGAGGCTGGA+TGG 0.535917 8.4:+39265033 MS.gene99979:CDS
TGCATGACCACCCTGATGCT+TGG 0.542705 8.4:+39265165 MS.gene99979:CDS
GAGTCGCGAGAAGGGTGGAA+TGG 0.551687 8.4:-39264192 None:intergenic
TTCGTCCTTAACCACAAAGT+CGG 0.562725 8.4:-39264274 None:intergenic
GAAGGCCGAAGGGCCAGTCT+GGG 0.566510 8.4:-39264118 None:intergenic
TATGTGTTTGCGCTTGTGGA+TGG 0.568768 8.4:-39264151 None:intergenic
CCTAAGATGGAATCCCAGAC+TGG 0.573043 8.4:+39264105 None:intergenic
TGCATTGAAGAGTCGCGAGA+AGG 0.574027 8.4:-39264201 None:intergenic
TATATAAAGGATTATGATGG+GGG 0.574524 8.4:+39264810 MS.gene99979:CDS
TCACTTGGAGAGAGATCGAT+GGG 0.581124 8.4:+39264782 MS.gene99979:CDS
ATTTACAAAAGAGATTCACT+TGG 0.581396 8.4:+39264767 MS.gene99979:CDS
GGATGGACTCCTGATATGTA+CGG 0.582260 8.4:+39265050 MS.gene99979:CDS
TGACATCCCTGGTTTGAAAG+AGG 0.585348 8.4:+39265025 MS.gene99979:CDS
TTTGAATGTGTGTGCAATGA+CGG 0.586373 8.4:+39264396 MS.gene99979:CDS
GCATTGAAGAGTCGCGAGAA+GGG 0.586791 8.4:-39264200 None:intergenic
AAGAGGTGGTTACAGTGCCA+GGG 0.587476 8.4:+39264332 MS.gene99979:CDS
ATTGGCTATTTCATCAAACA+AGG 0.588299 8.4:+39264744 MS.gene99979:CDS
TTCACTTGGAGAGAGATCGA+TGG 0.592040 8.4:+39264781 MS.gene99979:CDS
ATAGTGCCTGTCTTTGCCGA+CGG 0.594963 8.4:-39264893 None:intergenic
AGAATGGTTGATGACATCCC+TGG 0.603289 8.4:+39265014 MS.gene99979:CDS
AATGAGTGAGAGGCTGGAGT+CGG 0.604610 8.4:+39265265 MS.gene99979:CDS
CTAAAGCTATAAACCGCGAA+TGG 0.607724 8.4:-39265073 None:intergenic
CCTTGAATGGCCAAGCATCA+GGG 0.608425 8.4:-39265175 None:intergenic
TTTATGATTTCATAATAACC+AGG 0.609225 8.4:-39265221 None:intergenic
GTGGATGGAAGAAGTGGCGA+AGG 0.613879 8.4:-39264136 None:intergenic
AAGAAGTGGCGAAGGCCGAA+GGG 0.614868 8.4:-39264128 None:intergenic
ATCTAAAGACAATGAGTGAG+AGG 0.615052 8.4:+39265255 MS.gene99979:CDS
GGGGACAGAACCGGAAGTAG+CGG 0.615590 8.4:-39264253 None:intergenic
TTGAAGAGTCGCGAGAAGGG+TGG 0.615591 8.4:-39264197 None:intergenic
TTGTCCGACTTGTTATGGAT+AGG 0.616928 8.4:+39264499 MS.gene99979:CDS
TTGGAGAGAGATCGATGGGA+AGG 0.618097 8.4:+39264786 MS.gene99979:CDS
GCGCTTGTGGATGGAAGAAG+TGG 0.619030 8.4:-39264142 None:intergenic
TCGCGAGAAGGGTGGAATGG+AGG 0.623596 8.4:-39264189 None:intergenic
CAGAAGAGATCAGAAGCTGG+AGG 0.631156 8.4:+39264975 MS.gene99979:CDS
ATCCAGCCTCTTTCAAACCA+GGG 0.635327 8.4:-39265031 None:intergenic
ATCGTCCATATGCAAATCAG+AGG 0.635371 8.4:+39264580 MS.gene99979:CDS
TTATATAAAGGATTATGATG+GGG 0.635609 8.4:+39264809 MS.gene99979:CDS
ATTTATCAACTATGATCCGT+CGG 0.639900 8.4:+39264877 MS.gene99979:CDS
GGTTCCTATCCATAACAAGT+CGG 0.663748 8.4:-39264503 None:intergenic
ACAACTTCCCAATATGCCAA+AGG 0.664198 8.4:+39264470 MS.gene99979:CDS
CAAGCGCAAACACATATCTG+AGG 0.695714 8.4:+39264158 MS.gene99979:CDS
CGTCCTTAACCACAAAGTCG+GGG 0.697409 8.4:-39264272 None:intergenic
TGAATGGCCAAGCATCAGGG+TGG 0.741876 8.4:-39265172 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGTCTATAATGGTTATA+AGG + chr8.4:39264526-39264545 MS.gene99979:CDS 20.0%
!! GTTATATAAAGGATTATGAT+GGG + chr8.4:39264808-39264827 MS.gene99979:CDS 20.0%
!! TAAGTCTATAATGGTTATAA+GGG + chr8.4:39264527-39264546 MS.gene99979:CDS 20.0%
!! TGAAATCATAAAAAATCCAA+TGG + chr8.4:39265232-39265251 MS.gene99979:CDS 20.0%
!! TTATAACCATTATAGACTTA+TGG - chr8.4:39264527-39264546 None:intergenic 20.0%
!! TTATATAAAGGATTATGATG+GGG + chr8.4:39264809-39264828 MS.gene99979:CDS 20.0%
!! TTTATGATTTCATAATAACC+AGG - chr8.4:39265224-39265243 None:intergenic 20.0%
!!! ATAGTTGATAAATCAGTATA+AGG - chr8.4:39264870-39264889 None:intergenic 20.0%
!!! CATTTGTAATATATGGTTTT+TGG - chr8.4:39265368-39265387 None:intergenic 20.0%
!!! TAAACTTGGTTAAATGTTTT+AGG - chr8.4:39265124-39265143 None:intergenic 20.0%
! ATTTACAAAAGAGATTCACT+TGG + chr8.4:39264767-39264786 MS.gene99979:CDS 25.0%
! GGTTATATAAAGGATTATGA+TGG + chr8.4:39264807-39264826 MS.gene99979:CDS 25.0%
! TATATAAAGGATTATGATGG+GGG + chr8.4:39264810-39264829 MS.gene99979:CDS 25.0%
! TATGCTGATAATAATGCTAT+TGG + chr8.4:39264726-39264745 MS.gene99979:CDS 25.0%
! TATTCCTATTCCTAATAGAA+TGG + chr8.4:39264998-39265017 MS.gene99979:CDS 25.0%
! TGTAGCACATTTGTAATATA+TGG - chr8.4:39265375-39265394 None:intergenic 25.0%
!! TTCAGTGAATATATTTGTTG+AGG - chr8.4:39264301-39264320 None:intergenic 25.0%
!!! TATGGTTTTTGGAGAATTAT+AGG - chr8.4:39265357-39265376 None:intergenic 25.0%
AAATCAGTATAAGGAAGCTT+TGG - chr8.4:39264861-39264880 None:intergenic 30.0%
ACTGAAAAATTGCAGATAAG+AGG + chr8.4:39264315-39264334 MS.gene99979:CDS 30.0%
AGTGATGATCAACAAGTAAA+AGG + chr8.4:39264630-39264649 MS.gene99979:CDS 30.0%
ATGTCATCAACCATTCTATT+AGG - chr8.4:39265011-39265030 None:intergenic 30.0%
ATTTATCAACTATGATCCGT+CGG + chr8.4:39264877-39264896 MS.gene99979:CDS 30.0%
GATCAACAAGTAAAAGGTTA+TGG + chr8.4:39264636-39264655 MS.gene99979:CDS 30.0%
TAGGAACCATAAGTCTATAA+TGG + chr8.4:39264518-39264537 MS.gene99979:CDS 30.0%
TCAACCATTCTATTAGGAAT+AGG - chr8.4:39265005-39265024 None:intergenic 30.0%
TGTCACAATATTGTTTATGC+TGG + chr8.4:39264942-39264961 MS.gene99979:CDS 30.0%
! ATTGGCTATTTCATCAAACA+AGG + chr8.4:39264744-39264763 MS.gene99979:CDS 30.0%
!!! AATGTTTTAGGTTTGTAGCA+TGG - chr8.4:39265112-39265131 None:intergenic 30.0%
ATCTAAAGACAATGAGTGAG+AGG + chr8.4:39265255-39265274 MS.gene99979:CDS 35.0%
ATGCTATCAACGAAACCATA+TGG - chr8.4:39264431-39264450 None:intergenic 35.0%
CTCATTGTCTTTAGATCCAT+TGG - chr8.4:39265251-39265270 None:intergenic 35.0%
GAAAAATTGCAGATAAGAGG+TGG + chr8.4:39264318-39264337 MS.gene99979:CDS 35.0%
GTCATGCATTTCCTTTATGA+GGG - chr8.4:39265153-39265172 None:intergenic 35.0%
GTTTATGTGTTCCCTCATAA+AGG + chr8.4:39265139-39265158 MS.gene99979:CDS 35.0%
TATGAGGGAACACATAAACT+TGG - chr8.4:39265138-39265157 None:intergenic 35.0%
TCGATGGGAAGGTTATATAA+AGG + chr8.4:39264797-39264816 MS.gene99979:CDS 35.0%
TGCATTCTCAAACATTCTTC+TGG - chr8.4:39265330-39265349 None:intergenic 35.0%
TTTGAATGTGTGTGCAATGA+CGG + chr8.4:39264396-39264415 MS.gene99979:CDS 35.0%
AACGTACTCCTTTGGCATAT+TGG - chr8.4:39264481-39264500 None:intergenic 40.0%
ACAACTTCCCAATATGCCAA+AGG + chr8.4:39264470-39264489 MS.gene99979:CDS 40.0%
ACGTACTCCTTTGGCATATT+GGG - chr8.4:39264480-39264499 None:intergenic 40.0%
ATCGTCCATATGCAAATCAG+AGG + chr8.4:39264580-39264599 MS.gene99979:CDS 40.0%
CTAAAGCTATAAACCGCGAA+TGG - chr8.4:39265076-39265095 None:intergenic 40.0%
CTCAAGAAAGAGGAAGAATC+TGG + chr8.4:39264363-39264382 MS.gene99979:CDS 40.0%
GGAAGAGAATCTCAAGAAAG+AGG + chr8.4:39264353-39264372 MS.gene99979:CDS 40.0%
GGTCATGCATTTCCTTTATG+AGG - chr8.4:39265154-39265173 None:intergenic 40.0%
GGTTCCTATCCATAACAAGT+CGG - chr8.4:39264506-39264525 None:intergenic 40.0%
TCTTCAATGCACAACTTCAC+CGG + chr8.4:39264213-39264232 MS.gene99979:CDS 40.0%
TTCGTCCTTAACCACAAAGT+CGG - chr8.4:39264277-39264296 None:intergenic 40.0%
TTTCAGAAGAGATCAGAAGC+TGG + chr8.4:39264972-39264991 MS.gene99979:CDS 40.0%
TTTCTTGAGATTCTCTTCCC+TGG - chr8.4:39264352-39264371 None:intergenic 40.0%
!! TCGCGGTTTATAGCTTTAGA+TGG + chr8.4:39265077-39265096 MS.gene99979:CDS 40.0%
!! TTGTCCGACTTGTTATGGAT+AGG + chr8.4:39264499-39264518 MS.gene99979:CDS 40.0%
AAAGACAATGAGTGAGAGGC+TGG + chr8.4:39265259-39265278 MS.gene99979:CDS 45.0%
ATCCAGCCTCTTTCAAACCA+GGG - chr8.4:39265034-39265053 None:intergenic 45.0%
CAAGCGCAAACACATATCTG+AGG + chr8.4:39264158-39264177 MS.gene99979:CDS 45.0%
CAGATATGTGTTTGCGCTTG+TGG - chr8.4:39264158-39264177 None:intergenic 45.0%
CAGTATGCACGTGATGTAGA+TGG + chr8.4:39264684-39264703 MS.gene99979:CDS 45.0%
GCATCAACAGGTTCCTTGAA+TGG - chr8.4:39265191-39265210 None:intergenic 45.0%
TATGTGTTTGCGCTTGTGGA+TGG - chr8.4:39264154-39264173 None:intergenic 45.0%
TCACTTGGAGAGAGATCGAT+GGG + chr8.4:39264782-39264801 MS.gene99979:CDS 45.0%
TCGTCCTTAACCACAAAGTC+GGG - chr8.4:39264276-39264295 None:intergenic 45.0%
TGGCATATTGGGAAGTTGTC+TGG - chr8.4:39264469-39264488 None:intergenic 45.0%
TTCACTTGGAGAGAGATCGA+TGG + chr8.4:39264781-39264800 MS.gene99979:CDS 45.0%
! GCGAACCTCTGATTTGCATA+TGG - chr8.4:39264588-39264607 None:intergenic 45.0%
! GGATGGACTCCTGATATGTA+CGG + chr8.4:39265050-39265069 MS.gene99979:CDS 45.0%
! TGACATCCCTGGTTTGAAAG+AGG + chr8.4:39265025-39265044 MS.gene99979:CDS 45.0%
! TTATGATGGGGGAACTCTCA+TGG + chr8.4:39264821-39264840 MS.gene99979:CDS 45.0%
!! AGAATGGTTGATGACATCCC+TGG + chr8.4:39265014-39265033 MS.gene99979:CDS 45.0%
!! GTACGTTGTCCGACTTGTTA+TGG + chr8.4:39264494-39264513 MS.gene99979:CDS 45.0%
!! TGACGGTGTTGATGACCATA+TGG + chr8.4:39264413-39264432 MS.gene99979:CDS 45.0%
!!! ACTGAATTTTGAAGCCGGAC+TGG - chr8.4:39265439-39265458 None:intergenic 45.0%
AACAGTTCAGCCGCTACTTC+CGG + chr8.4:39264243-39264262 MS.gene99979:CDS 50.0%
AAGAGGTGGTTACAGTGCCA+GGG + chr8.4:39264332-39264351 MS.gene99979:CDS 50.0%
AATGAGTGAGAGGCTGGAGT+CGG + chr8.4:39265265-39265284 MS.gene99979:CDS 50.0%
AGTCGGACAACGTACTCCTT+TGG - chr8.4:39264489-39264508 None:intergenic 50.0%
ATAGTGCCTGTCTTTGCCGA+CGG - chr8.4:39264896-39264915 None:intergenic 50.0%
CAGAAGAGATCAGAAGCTGG+AGG + chr8.4:39264975-39264994 MS.gene99979:CDS 50.0%
CATCCAGCCTCTTTCAAACC+AGG - chr8.4:39265035-39265054 None:intergenic 50.0%
CCTTGAATGGCCAAGCATCA+GGG - chr8.4:39265178-39265197 None:intergenic 50.0%
CGTCCTTAACCACAAAGTCG+GGG - chr8.4:39264275-39264294 None:intergenic 50.0%
CTGATATGTACGGCCATTCG+CGG + chr8.4:39265060-39265079 MS.gene99979:CDS 50.0%
GAGCATAATCGCGTTGTTGG+AGG + chr8.4:39264549-39264568 MS.gene99979:CDS 50.0%
GCATTGAAGAGTCGCGAGAA+GGG - chr8.4:39264203-39264222 None:intergenic 50.0%
GGAACACTCTGTGCATCAAC+AGG - chr8.4:39265203-39265222 None:intergenic 50.0%
GGCTGAACTGTTCACAGAAC+CGG - chr8.4:39264235-39264254 None:intergenic 50.0%
TAAGAGGTGGTTACAGTGCC+AGG + chr8.4:39264331-39264350 MS.gene99979:CDS 50.0%
TATGATCCGTCGGCAAAGAC+AGG + chr8.4:39264887-39264906 MS.gene99979:CDS 50.0%
TCCTTGAATGGCCAAGCATC+AGG - chr8.4:39265179-39265198 None:intergenic 50.0%
TGCATTGAAGAGTCGCGAGA+AGG - chr8.4:39264204-39264223 None:intergenic 50.0%
TGTCCCCGACTTTGTGGTTA+AGG + chr8.4:39264269-39264288 MS.gene99979:CDS 50.0%
TTGGAGAGAGATCGATGGGA+AGG + chr8.4:39264786-39264805 MS.gene99979:CDS 50.0%
! AGGGAGCATAATCGCGTTGT+TGG + chr8.4:39264546-39264565 MS.gene99979:CDS 50.0%
! ATCCCTGGTTTGAAAGAGGC+TGG + chr8.4:39265029-39265048 MS.gene99979:CDS 50.0%
! CTGGTTTGAAAGAGGCTGGA+TGG + chr8.4:39265033-39265052 MS.gene99979:CDS 50.0%
! GTTGATGCACAGAGTGTTCC+TGG + chr8.4:39265203-39265222 MS.gene99979:CDS 50.0%
!!! GAATTTTGAAGCCGGACTGG+AGG - chr8.4:39265436-39265455 None:intergenic 50.0%
AAGAAGTGGCGAAGGCCGAA+GGG - chr8.4:39264131-39264150 None:intergenic 55.0%
CACAAAGTCGGGGACAGAAC+CGG - chr8.4:39264265-39264284 None:intergenic 55.0%
CCCTGATGCTTGGCCATTCA+AGG + chr8.4:39265175-39265194 MS.gene99979:CDS 55.0%
CGCGAATGGCCGTACATATC+AGG - chr8.4:39265062-39265081 None:intergenic 55.0%
GCGCTTGTGGATGGAAGAAG+TGG - chr8.4:39264145-39264164 None:intergenic 55.0%
GTGACAATGCTCCTCCAGTC+CGG + chr8.4:39265422-39265441 MS.gene99979:CDS 55.0%
GTGGATGGAAGAAGTGGCGA+AGG - chr8.4:39264139-39264158 None:intergenic 55.0%
TGAATGGCCAAGCATCAGGG+TGG - chr8.4:39265175-39265194 None:intergenic 55.0%
TGCATGACCACCCTGATGCT+TGG + chr8.4:39265165-39265184 MS.gene99979:CDS 55.0%
TTGAAGAGTCGCGAGAAGGG+TGG - chr8.4:39264200-39264219 None:intergenic 55.0%
CGGTTCTGTCCCCGACTTTG+TGG + chr8.4:39264263-39264282 MS.gene99979:CDS 60.0%
GAAGAAGTGGCGAAGGCCGA+AGG - chr8.4:39264132-39264151 None:intergenic 60.0%
GAGTCGCGAGAAGGGTGGAA+TGG - chr8.4:39264195-39264214 None:intergenic 60.0%
GGGGACAGAACCGGAAGTAG+CGG - chr8.4:39264256-39264275 None:intergenic 60.0%
TCGCGAGAAGGGTGGAATGG+AGG - chr8.4:39264192-39264211 None:intergenic 60.0%
! GGAATCCCAGACTGGCCCTT+CGG + chr8.4:39264113-39264132 MS.gene99979:CDS 60.0%
GAAGGCCGAAGGGCCAGTCT+GGG - chr8.4:39264121-39264140 None:intergenic 65.0%
CGAAGGCCGAAGGGCCAGTC+TGG - chr8.4:39264122-39264141 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 39264111 39265460 39264111 ID=MS.gene99979
chr8.4 mRNA 39264111 39265460 39264111 ID=MS.gene99979.t1;Parent=MS.gene99979
chr8.4 exon 39264111 39265460 39264111 ID=MS.gene99979.t1.exon1;Parent=MS.gene99979.t1
chr8.4 CDS 39264111 39265460 39264111 ID=cds.MS.gene99979.t1;Parent=MS.gene99979.t1
Gene Sequence

>MS.gene99979

ATGGAATCCCAGACTGGCCCTTCGGCCTTCGCCACTTCTTCCATCCACAAGCGCAAACACATATCTGAGGATCACGCACCTCCATTCCACCCTTCTCGCGACTCTTCAATGCACAACTTCACCGGTTCTGTGAACAGTTCAGCCGCTACTTCCGGTTCTGTCCCCGACTTTGTGGTTAAGGACGAAGCCTCAACAAATATATTCACTGAAAAATTGCAGATAAGAGGTGGTTACAGTGCCAGGGAAGAGAATCTCAAGAAAGAGGAAGAATCTGGATTGCTCAAATTTGAATGTGTGTGCAATGACGGTGTTGATGACCATATGGTTTCGTTGATAGCATTGAAGAATATATATGCCAGACAACTTCCCAATATGCCAAAGGAGTACGTTGTCCGACTTGTTATGGATAGGAACCATAAGTCTATAATGGTTATAAGGGAGCATAATCGCGTTGTTGGAGGCGTTACATATCGTCCATATGCAAATCAGAGGTTCGCTGAGATAGCTTTTTGTGCAATTAGTGATGATCAACAAGTAAAAGGTTATGGTACTAGATTGATGAATCACTTGAAACAGTATGCACGTGATGTAGATGGACTGACACATTTTCTCACGTATGCTGATAATAATGCTATTGGCTATTTCATCAAACAAGGATTTACAAAAGAGATTCACTTGGAGAGAGATCGATGGGAAGGTTATATAAAGGATTATGATGGGGGAACTCTCATGGAATGTGAGATTGATCCAAAGCTTCCTTATACTGATTTATCAACTATGATCCGTCGGCAAAGACAGGCACTATATGAAAAGATTAGAGAACTATCTAACTGTCACAATATTGTTTATGCTGGAATTGATTTTCAGAAGAGATCAGAAGCTGGAGGTATTCCTATTCCTAATAGAATGGTTGATGACATCCCTGGTTTGAAAGAGGCTGGATGGACTCCTGATATGTACGGCCATTCGCGGTTTATAGCTTTAGATGGTTCTACTGACCATGCTACAAACCTAAAACATTTAACCAAGTTTATGTGTTCCCTCATAAAGGAAATGCATGACCACCCTGATGCTTGGCCATTCAAGGAACCTGTTGATGCACAGAGTGTTCCTGGTTATTATGAAATCATAAAAAATCCAATGGATCTAAAGACAATGAGTGAGAGGCTGGAGTCGGAACAATATTACGTCACATTTGAGATGTTTCTCGCAGATGCCAGAAGAATGTTTGAGAATGCACGTACCTATAATTCTCCAAAAACCATATATTACAAATGTGCTACAAAACTAGAAGCACACTTTCAAAGCAAAGTGACAATGCTCCTCCAGTCCGGCTTCAAAATTCAGTAG
Protein sequence

>MS.gene99979.t1

MESQTGPSAFATSSIHKRKHISEDHAPPFHPSRDSSMHNFTGSVNSSAATSGSVPDFVVKDEASTNIFTEKLQIRGGYSAREENLKKEEESGLLKFECVCNDGVDDHMVSLIALKNIYARQLPNMPKEYVVRLVMDRNHKSIMVIREHNRVVGGVTYRPYANQRFAEIAFCAISDDQQVKGYGTRLMNHLKQYARDVDGLTHFLTYADNNAIGYFIKQGFTKEIHLERDRWEGYIKDYDGGTLMECEIDPKLPYTDLSTMIRRQRQALYEKIRELSNCHNIVYAGIDFQKRSEAGGIPIPNRMVDDIPGLKEAGWTPDMYGHSRFIALDGSTDHATNLKHLTKFMCSLIKEMHDHPDAWPFKEPVDAQSVPGYYEIIKNPMDLKTMSERLESEQYYVTFEMFLADARRMFENARTYNSPKTIYYKCATKLEAHFQSKVTMLLQSGFKIQ