Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99998.t1 | RHN80703.1 | 79.2 | 595 | 87 | 4 | 1 | 562 | 87 | 677 | 6.90E-260 | 906.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99998.t1 | F4K493 | 31.0 | 749 | 314 | 16 | 4 | 561 | 98 | 834 | 1.9e-77 | 291.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99998.t1 | A0A072VN36 | 79.2 | 595 | 87 | 4 | 1 | 562 | 100 | 690 | 5.0e-260 | 906.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene99998.t1 | TR | SNF2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99998.t1 | MTR_1g081750 | 79.160 | 595 | 87 | 4 | 1 | 562 | 100 | 690 | 0.0 | 944 |
| MS.gene99998.t1 | MTR_7g026650 | 51.623 | 647 | 219 | 17 | 2 | 561 | 87 | 726 | 0.0 | 570 |
| MS.gene99998.t1 | MTR_3g071860 | 50.826 | 484 | 175 | 12 | 142 | 562 | 356 | 839 | 2.92e-136 | 427 |
| MS.gene99998.t1 | MTR_3g071860 | 66.667 | 150 | 47 | 2 | 1 | 147 | 102 | 251 | 1.14e-55 | 203 |
| MS.gene99998.t1 | MTR_5g083300 | 47.429 | 350 | 144 | 5 | 251 | 561 | 526 | 874 | 3.66e-87 | 294 |
| MS.gene99998.t1 | MTR_5g083300 | 43.373 | 166 | 75 | 5 | 3 | 161 | 104 | 257 | 5.98e-25 | 110 |
| MS.gene99998.t1 | MTR_5g083300 | 47.429 | 350 | 144 | 5 | 251 | 561 | 563 | 911 | 3.69e-87 | 295 |
| MS.gene99998.t1 | MTR_5g083300 | 43.373 | 166 | 75 | 5 | 3 | 161 | 141 | 294 | 5.16e-25 | 110 |
| MS.gene99998.t1 | MTR_7g026620 | 42.506 | 407 | 140 | 14 | 140 | 532 | 11 | 337 | 1.30e-77 | 258 |
| MS.gene99998.t1 | MTR_7g450860 | 34.892 | 278 | 153 | 7 | 303 | 563 | 596 | 862 | 4.17e-42 | 163 |
| MS.gene99998.t1 | MTR_7g029525 | 41.989 | 181 | 103 | 2 | 318 | 497 | 662 | 841 | 2.05e-41 | 160 |
| MS.gene99998.t1 | MTR_7g450780 | 43.085 | 188 | 93 | 5 | 318 | 497 | 667 | 848 | 1.38e-40 | 158 |
| MS.gene99998.t1 | MTR_7g450820 | 41.622 | 185 | 98 | 3 | 318 | 497 | 567 | 746 | 3.00e-40 | 157 |
| MS.gene99998.t1 | MTR_7g050445 | 41.711 | 187 | 97 | 5 | 318 | 497 | 630 | 811 | 8.88e-40 | 155 |
| MS.gene99998.t1 | MTR_4g088650 | 40.761 | 184 | 101 | 3 | 318 | 497 | 578 | 757 | 1.76e-39 | 155 |
| MS.gene99998.t1 | MTR_7g450790 | 40.437 | 183 | 101 | 3 | 319 | 497 | 778 | 956 | 2.98e-38 | 151 |
| MS.gene99998.t1 | MTR_2g437480 | 32.381 | 210 | 113 | 6 | 305 | 508 | 416 | 602 | 3.23e-25 | 111 |
| MS.gene99998.t1 | MTR_8g037345 | 32.474 | 194 | 105 | 6 | 318 | 508 | 282 | 452 | 2.38e-24 | 108 |
| MS.gene99998.t1 | MTR_7g026550 | 33.065 | 248 | 82 | 8 | 294 | 540 | 18 | 182 | 3.01e-23 | 102 |
| MS.gene99998.t1 | MTR_3g084600 | 46.281 | 121 | 33 | 3 | 320 | 440 | 16 | 104 | 2.52e-20 | 89.4 |
| MS.gene99998.t1 | MTR_4g032945 | 60.417 | 48 | 19 | 0 | 1 | 48 | 1 | 48 | 4.28e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99998.t1 | AT5G20420 | 42.693 | 349 | 161 | 6 | 252 | 561 | 486 | 834 | 8.44e-77 | 265 |
| MS.gene99998.t1 | AT5G20420 | 38.272 | 162 | 87 | 4 | 3 | 163 | 97 | 246 | 4.65e-23 | 104 |
| MS.gene99998.t1 | AT3G42670 | 42.286 | 350 | 162 | 7 | 251 | 561 | 480 | 828 | 5.81e-75 | 259 |
| MS.gene99998.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 7.22e-19 | 91.7 |
| MS.gene99998.t1 | AT3G42670 | 42.286 | 350 | 162 | 7 | 251 | 561 | 480 | 828 | 5.81e-75 | 259 |
| MS.gene99998.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 7.22e-19 | 91.7 |
| MS.gene99998.t1 | AT3G42670 | 42.286 | 350 | 162 | 7 | 251 | 561 | 480 | 828 | 5.81e-75 | 259 |
| MS.gene99998.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 7.22e-19 | 91.7 |
| MS.gene99998.t1 | AT3G42670 | 51.406 | 249 | 115 | 4 | 318 | 561 | 583 | 830 | 1.21e-74 | 258 |
| MS.gene99998.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 7.41e-19 | 91.7 |
| MS.gene99998.t1 | AT1G05490 | 37.838 | 185 | 103 | 4 | 320 | 497 | 736 | 915 | 3.50e-36 | 145 |
| MS.gene99998.t1 | AT3G24340 | 36.111 | 180 | 111 | 3 | 320 | 497 | 491 | 668 | 2.59e-32 | 133 |
| MS.gene99998.t1 | AT2G16390 | 33.333 | 177 | 98 | 2 | 316 | 492 | 271 | 427 | 1.09e-24 | 109 |
| MS.gene99998.t1 | AT2G16390 | 33.333 | 177 | 98 | 2 | 316 | 492 | 268 | 424 | 1.17e-24 | 109 |
| MS.gene99998.t1 | AT2G21450 | 32.044 | 181 | 95 | 4 | 316 | 492 | 190 | 346 | 1.46e-21 | 99.8 |
| MS.gene99998.t1 | AT2G21450 | 32.044 | 181 | 95 | 4 | 316 | 492 | 183 | 339 | 1.58e-21 | 99.8 |
| MS.gene99998.t1 | AT2G21450 | 32.044 | 181 | 95 | 4 | 316 | 492 | 92 | 248 | 1.76e-21 | 99.4 |
Find 86 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGATACCATTAGAATT+TGG | 0.209817 | 5.2:+41431066 | None:intergenic |
| CCAGGTAGAACCATTGATTT+TGG | 0.226511 | 5.2:+41431093 | None:intergenic |
| TATCGATTGGATGAACAAAT+TGG | 0.242680 | 5.2:-41431949 | MS.gene99998:CDS |
| TTTATCTTCTGTTCTCATTA+AGG | 0.252520 | 5.2:+41430963 | None:intergenic |
| CCACAATCTAGGTTACTTTC+CGG | 0.284693 | 5.2:-41433042 | MS.gene99998:CDS |
| CAAGATTGTGTATGAAGTTA+TGG | 0.284889 | 5.2:-41432941 | MS.gene99998:CDS |
| CCAAAGAAAATGACAGTGTT+TGG | 0.290902 | 5.2:-41431455 | MS.gene99998:CDS |
| TAATGGTATCAAGCATGATT+TGG | 0.292292 | 5.2:-41431058 | MS.gene99998:CDS |
| TGTTACCGCGTCATCTTTAA+AGG | 0.296633 | 5.2:-41432992 | MS.gene99998:CDS |
| GGTAGGTGGAAAGGCTAAAA+TGG | 0.309089 | 5.2:-41431581 | MS.gene99998:intron |
| TTGAAGTTCAAAACATTCAT+AGG | 0.322383 | 5.2:+41432895 | None:intergenic |
| TCAACTGATGCTACTAATCT+TGG | 0.333239 | 5.2:-41431489 | MS.gene99998:CDS |
| GAGTGGTCCAAAGGTTAATA+AGG | 0.365464 | 5.2:-41432854 | MS.gene99998:CDS |
| CGTCTTTCTTCACTGATAGT+TGG | 0.366946 | 5.2:+41432484 | None:intergenic |
| CCTTCTTCATCACATGATAA+TGG | 0.368117 | 5.2:+41432760 | None:intergenic |
| GCTCTTCATTGCCACAATCT+AGG | 0.368231 | 5.2:-41433053 | MS.gene99998:CDS |
| TAGCCCATGACAAGAACAAT+AGG | 0.384093 | 5.2:+41431000 | None:intergenic |
| TTCATAGGACCACTAATATT+AGG | 0.384672 | 5.2:+41432910 | None:intergenic |
| CATGTGTAGAGTGTGGTCTT+TGG | 0.395080 | 5.2:+41431198 | None:intergenic |
| CACAATCTAGGTTACTTTCC+GGG | 0.397509 | 5.2:-41433041 | MS.gene99998:CDS |
| CCTGGAGTTCCAAATTCTAA+TGG | 0.399610 | 5.2:-41431075 | MS.gene99998:CDS |
| TTGGTGTCGTCGAATGTCTC+TGG | 0.405539 | 5.2:+41431112 | None:intergenic |
| AAGAAAGAGGATAATGTGAT+TGG | 0.408479 | 5.2:-41433189 | MS.gene99998:CDS |
| GTCTTTGGAGCTAGGACTAA+TGG | 0.409580 | 5.2:+41431213 | None:intergenic |
| CACCCTATTGTTCTTGTCAT+GGG | 0.413983 | 5.2:-41431003 | MS.gene99998:CDS |
| CAAAGAAAATGACAGTGTTT+GGG | 0.414944 | 5.2:-41431454 | MS.gene99998:CDS |
| AAGAAAAGAGATGGTGAGAA+AGG | 0.416344 | 5.2:+41431269 | None:intergenic |
| AAGATTGTGTATGAAGTTAT+GGG | 0.424794 | 5.2:-41432940 | MS.gene99998:CDS |
| ATCATGTTCACATGTTTCCT+TGG | 0.426716 | 5.2:+41431972 | None:intergenic |
| GGCAATTATCCTAATATTAG+TGG | 0.431684 | 5.2:-41432919 | MS.gene99998:CDS |
| ACACCCTATTGTTCTTGTCA+TGG | 0.436213 | 5.2:-41431004 | MS.gene99998:CDS |
| GCGGATCTGTAAGGAGCATA+TGG | 0.440201 | 5.2:-41432689 | MS.gene99998:CDS |
| GATAATGGAGACTCATTGTA+TGG | 0.461722 | 5.2:+41432775 | None:intergenic |
| ATATCTCATGCTCCTGGAGC+TGG | 0.462480 | 5.2:-41431297 | MS.gene99998:CDS |
| TATCGATGATCATAAAGAAC+AGG | 0.472137 | 5.2:-41432602 | MS.gene99998:CDS |
| CCATTAGAATTTGGAACTCC+AGG | 0.476634 | 5.2:+41431075 | None:intergenic |
| AGAGTGTGGTCTTTGGAGCT+AGG | 0.489103 | 5.2:+41431205 | None:intergenic |
| GCAGAAGAAAGAAAACGTAT+TGG | 0.496020 | 5.2:-41432455 | MS.gene99998:CDS |
| ACGAAGAAGGCGGATCTGTA+AGG | 0.502286 | 5.2:-41432698 | MS.gene99998:CDS |
| AATAAGGAAAATCAGTTGAC+TGG | 0.505533 | 5.2:-41432838 | MS.gene99998:CDS |
| AACTTCAAATCCTGTGATGA+TGG | 0.524328 | 5.2:-41432880 | MS.gene99998:CDS |
| TAACAATTTCTGCACGAAGA+AGG | 0.525323 | 5.2:-41432711 | MS.gene99998:CDS |
| TGTGTTATATCTCATGCTCC+TGG | 0.525908 | 5.2:-41431303 | MS.gene99998:CDS |
| GAAACAAAGCAGTGAACATA+CGG | 0.535472 | 5.2:-41431547 | MS.gene99998:CDS |
| TGGATAAGATACACCGGCAT+GGG | 0.541181 | 5.2:+41431147 | None:intergenic |
| TTGGATCTTCTTCAGATGGT+AGG | 0.545112 | 5.2:+41432503 | None:intergenic |
| ATAGTTGGATCTTCTTCAGA+TGG | 0.550685 | 5.2:+41432499 | None:intergenic |
| GGAAGTAATTGATGCTTACA+TGG | 0.555455 | 5.2:-41432539 | MS.gene99998:CDS |
| AGCATCAATTACTTCCTCGC+AGG | 0.555873 | 5.2:+41432546 | None:intergenic |
| CCAAAATCAATGGTTCTACC+TGG | 0.556365 | 5.2:-41431093 | MS.gene99998:CDS |
| ATATCCAATGGTAGGTGGAA+AGG | 0.558302 | 5.2:-41431590 | MS.gene99998:intron |
| GTCTCTGGCTTCGACAGATG+TGG | 0.558594 | 5.2:+41431127 | None:intergenic |
| TTCGACGACACCAAAATCAA+TGG | 0.558930 | 5.2:-41431103 | MS.gene99998:CDS |
| ACCACTCTTACCATCATCAC+AGG | 0.562701 | 5.2:+41432870 | None:intergenic |
| TGACACAAATAAAGAATCCA+AGG | 0.564564 | 5.2:-41431989 | MS.gene99998:CDS |
| AGCCCATGACAAGAACAATA+GGG | 0.568333 | 5.2:+41431001 | None:intergenic |
| GGTTTCATATGTCATAAGAT+CGG | 0.570324 | 5.2:-41432971 | MS.gene99998:CDS |
| CCATTATCATGTGATGAAGA+AGG | 0.574271 | 5.2:-41432760 | MS.gene99998:CDS |
| AAAATGGAATGTTCCCATGC+CGG | 0.580266 | 5.2:-41431160 | MS.gene99998:CDS |
| CTTCAACGAAATAACTGTGA+AGG | 0.592014 | 5.2:-41433138 | MS.gene99998:CDS |
| ATAACTTACAAGAAAAGAGA+TGG | 0.597163 | 5.2:+41431260 | None:intergenic |
| CCGGAAAGTAACCTAGATTG+TGG | 0.605716 | 5.2:+41433042 | None:intergenic |
| TATGATGATCAAGGTTCACA+TGG | 0.609118 | 5.2:-41433231 | MS.gene99998:CDS |
| GTATACAAAAGATCAAAAGC+AGG | 0.610004 | 5.2:-41431032 | MS.gene99998:CDS |
| GGAATATACTGCCGTACATG+CGG | 0.610029 | 5.2:-41431928 | MS.gene99998:CDS |
| CGTATTGGAAAGCGGTGGTG+AGG | 0.610073 | 5.2:-41432440 | MS.gene99998:intron |
| AGATGACGCGGTAACAAACC+AGG | 0.611437 | 5.2:+41432999 | None:intergenic |
| GCAGGGTGCAAATGCTGATG+AGG | 0.611917 | 5.2:-41432019 | MS.gene99998:intron |
| CAAAGACCACACTCTACACA+TGG | 0.613075 | 5.2:-41431197 | MS.gene99998:CDS |
| AAAATCACACTGAAAGCGCA+TGG | 0.616805 | 5.2:-41430937 | MS.gene99998:CDS |
| CATAAAGAACAGGATCATAG+AGG | 0.617267 | 5.2:-41432592 | MS.gene99998:CDS |
| GTGGATAAGATACACCGGCA+TGG | 0.619432 | 5.2:+41431146 | None:intergenic |
| CAACTATCAGTGAAGAAAGA+CGG | 0.622612 | 5.2:-41432483 | MS.gene99998:CDS |
| GAACATTTATTATATTTGTG+AGG | 0.623911 | 5.2:+41433276 | None:intergenic |
| CAATTTCTGCACGAAGAAGG+CGG | 0.630117 | 5.2:-41432708 | MS.gene99998:CDS |
| ATGTGAACATGATTATCGAT+TGG | 0.633134 | 5.2:-41431962 | MS.gene99998:CDS |
| TGATGGTAAGAGTGGTCCAA+AGG | 0.634249 | 5.2:-41432863 | MS.gene99998:CDS |
| TCCTGTGATGATGGTAAGAG+TGG | 0.654377 | 5.2:-41432871 | MS.gene99998:CDS |
| AAAGAACAGGATCATAGAGG+TGG | 0.669391 | 5.2:-41432589 | MS.gene99998:CDS |
| TAGATTGTGGCAATGAAGAG+CGG | 0.677170 | 5.2:+41433055 | None:intergenic |
| AAAGAAAACGTATTGGAAAG+CGG | 0.682656 | 5.2:-41432448 | MS.gene99998:CDS |
| CAGATGTGGATAAGATACAC+CGG | 0.687722 | 5.2:+41431141 | None:intergenic |
| TTATCATGTGATGAAGAAGG+TGG | 0.694141 | 5.2:-41432757 | MS.gene99998:CDS |
| TGAAACCTTTAAAGATGACG+CGG | 0.702218 | 5.2:+41432987 | None:intergenic |
| GAAAACGTATTGGAAAGCGG+TGG | 0.722789 | 5.2:-41432445 | MS.gene99998:CDS |
| GTTAAATGCTGATACCTGCG+AGG | 0.758695 | 5.2:-41432560 | MS.gene99998:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGACAATTATGATTTAT+AGG | - | chr5.2:41432095-41432114 | MS.gene99998:intron | 15.0% |
| !!! | GATTTAAATACTTTGTTTTT+TGG | - | chr5.2:41432150-41432169 | MS.gene99998:intron | 15.0% |
| !! | GAACATTTATTATATTTGTG+AGG | + | chr5.2:41430975-41430994 | None:intergenic | 20.0% |
| !!! | AAAAAGCTTTTCAATTTCTT+TGG | - | chr5.2:41432859-41432878 | MS.gene99998:CDS | 20.0% |
| !!! | GTAAAACATTTTATACAGAT+AGG | + | chr5.2:41432000-41432019 | None:intergenic | 20.0% |
| !!! | TAATTACAAGTTTGAAATCA+TGG | + | chr5.2:41432534-41432553 | None:intergenic | 20.0% |
| !!! | TATGGATTCGATAATTTTAT+TGG | - | chr5.2:41431577-41431596 | MS.gene99998:CDS | 20.0% |
| !!! | TGGTTTTATCTTCTATTTTA+AGG | - | chr5.2:41432170-41432189 | MS.gene99998:intron | 20.0% |
| ! | AAAACATATCCAACCAAATA+AGG | + | chr5.2:41432574-41432593 | None:intergenic | 25.0% |
| ! | AAGATTGTGTATGAAGTTAT+GGG | - | chr5.2:41431308-41431327 | MS.gene99998:CDS | 25.0% |
| ! | ACAAGTAAAAGACAAGAAAT+GGG | + | chr5.2:41431939-41431958 | None:intergenic | 25.0% |
| ! | ATAACTTACAAGAAAAGAGA+TGG | + | chr5.2:41432991-41433010 | None:intergenic | 25.0% |
| ! | GTTGTCTAATTTATATCCAA+TGG | - | chr5.2:41432646-41432665 | MS.gene99998:CDS | 25.0% |
| ! | TCTAATTTATATCCAATGGT+AGG | - | chr5.2:41432650-41432669 | MS.gene99998:CDS | 25.0% |
| ! | TTGAAGTTCAAAACATTCAT+AGG | + | chr5.2:41431356-41431375 | None:intergenic | 25.0% |
| ! | TTTATCTTCTGTTCTCATTA+AGG | + | chr5.2:41433288-41433307 | None:intergenic | 25.0% |
| !! | AAGTTTCAAAGTGTAACTTT+TGG | + | chr5.2:41432473-41432492 | None:intergenic | 25.0% |
| !! | AATAAAAACTCTGAAGAAAG+AGG | - | chr5.2:41431046-41431065 | MS.gene99998:CDS | 25.0% |
| !! | AGTTTTTACTTGACTTACAA+TGG | + | chr5.2:41432381-41432400 | None:intergenic | 25.0% |
| !! | GTTCAGAAGTTAATTCTTTT+AGG | - | chr5.2:41431153-41431172 | MS.gene99998:CDS | 25.0% |
| !! | GTTTTTACTTGACTTACAAT+GGG | + | chr5.2:41432380-41432399 | None:intergenic | 25.0% |
| !! | TGATTTTCCTTATTAACCTT+TGG | + | chr5.2:41431404-41431423 | None:intergenic | 25.0% |
| !! | TGTAACTTTAGTTCCTTATT+TGG | - | chr5.2:41432558-41432577 | MS.gene99998:CDS | 25.0% |
| !!! | AAGGTGGTTATATTGTTTTT+CGG | - | chr5.2:41431507-41431526 | MS.gene99998:CDS | 25.0% |
| !!! | AGAAGTTAATTCTTTTAGGT+GGG | - | chr5.2:41431157-41431176 | MS.gene99998:CDS | 25.0% |
| !!! | AGTTATTTCGTTGAAGTTTT+TGG | + | chr5.2:41431106-41431125 | None:intergenic | 25.0% |
| !!! | ATCTTCTATTTTAAGGCTAA+AGG | - | chr5.2:41432177-41432196 | MS.gene99998:intron | 25.0% |
| !!! | GAAATTGAAAAGCTTTTTTC+TGG | + | chr5.2:41432857-41432876 | None:intergenic | 25.0% |
| !!! | GTAAAGTTTTATGATGATCA+AGG | - | chr5.2:41431008-41431027 | MS.gene99998:CDS | 25.0% |
| AAAGAAAAATCTGACACAAC+TGG | - | chr5.2:41432918-41432937 | MS.gene99998:CDS | 30.0% | |
| AAAGAAAACGTATTGGAAAG+CGG | - | chr5.2:41431800-41431819 | MS.gene99998:intron | 30.0% | |
| AACTCTTAAATACCATAGCA+GGG | - | chr5.2:41432212-41432231 | MS.gene99998:intron | 30.0% | |
| AAGAAAGAGGATAATGTGAT+TGG | - | chr5.2:41431059-41431078 | MS.gene99998:CDS | 30.0% | |
| AATAAGGAAAATCAGTTGAC+TGG | - | chr5.2:41431410-41431429 | MS.gene99998:CDS | 30.0% | |
| AATTTATATCCAATGGTAGG+TGG | - | chr5.2:41432653-41432672 | MS.gene99998:CDS | 30.0% | |
| ACATCAAGTTATCTTCTTGA+TGG | - | chr5.2:41431884-41431903 | MS.gene99998:intron | 30.0% | |
| ACTGTCAACAAAATCATAGT+CGG | - | chr5.2:41432020-41432039 | MS.gene99998:intron | 30.0% | |
| ATGTGAACATGATTATCGAT+TGG | - | chr5.2:41432286-41432305 | MS.gene99998:intron | 30.0% | |
| CAAAGAAAATGACAGTGTTT+GGG | - | chr5.2:41432794-41432813 | MS.gene99998:CDS | 30.0% | |
| CAAGATTGTGTATGAAGTTA+TGG | - | chr5.2:41431307-41431326 | MS.gene99998:CDS | 30.0% | |
| GACAAGTAAAAGACAAGAAA+TGG | + | chr5.2:41431940-41431959 | None:intergenic | 30.0% | |
| GACTGACATATAGAAAGAAA+TGG | - | chr5.2:41431850-41431869 | MS.gene99998:intron | 30.0% | |
| GGCAATTATCCTAATATTAG+TGG | - | chr5.2:41431329-41431348 | MS.gene99998:CDS | 30.0% | |
| GGTTTCATATGTCATAAGAT+CGG | - | chr5.2:41431277-41431296 | MS.gene99998:CDS | 30.0% | |
| GTATACAAAAGATCAAAAGC+AGG | - | chr5.2:41433216-41433235 | MS.gene99998:CDS | 30.0% | |
| TAATGGTATCAAGCATGATT+TGG | - | chr5.2:41433190-41433209 | MS.gene99998:CDS | 30.0% | |
| TATATGTCAGTCAAATCATC+AGG | + | chr5.2:41431842-41431861 | None:intergenic | 30.0% | |
| TATCGATGATCATAAAGAAC+AGG | - | chr5.2:41431646-41431665 | MS.gene99998:intron | 30.0% | |
| TGACACAAATAAAGAATCCA+AGG | - | chr5.2:41432259-41432278 | MS.gene99998:intron | 30.0% | |
| TGCTTGATACCATTAGAATT+TGG | + | chr5.2:41433185-41433204 | None:intergenic | 30.0% | |
| TTATCTTCTTGATGGAAATG+AGG | - | chr5.2:41431892-41431911 | MS.gene99998:CDS | 30.0% | |
| TTCAACCATAAATGGTTCAA+CGG | + | chr5.2:41432058-41432077 | None:intergenic | 30.0% | |
| TTCATAGGACCACTAATATT+AGG | + | chr5.2:41431341-41431360 | None:intergenic | 30.0% | |
| ! | ACTTTAGTTCCTTATTTGGT+TGG | - | chr5.2:41432562-41432581 | MS.gene99998:CDS | 30.0% |
| ! | CAGAAGTTAATTCTTTTAGG+TGG | - | chr5.2:41431156-41431175 | MS.gene99998:CDS | 30.0% |
| ! | TAGTTGACTTCAACCATAAA+TGG | + | chr5.2:41432066-41432085 | None:intergenic | 30.0% |
| ! | TATCGATTGGATGAACAAAT+TGG | - | chr5.2:41432299-41432318 | MS.gene99998:intron | 30.0% |
| ! | TTACAAGTTTGAAATCATGG+TGG | + | chr5.2:41432531-41432550 | None:intergenic | 30.0% |
| ! | TTCTTTGGAAAAACATTGCA+GGG | - | chr5.2:41432874-41432893 | MS.gene99998:CDS | 30.0% |
| ! | TTGTTACACGTTTTCTCATT+TGG | - | chr5.2:41432624-41432643 | MS.gene99998:CDS | 30.0% |
| ! | TTTCTTTGGAAAAACATTGC+AGG | - | chr5.2:41432873-41432892 | MS.gene99998:CDS | 30.0% |
| !! | AGGTGGTTATATTGTTTTTC+GGG | - | chr5.2:41431508-41431527 | MS.gene99998:CDS | 30.0% |
| !! | TATTTCGTTGAAGTTTTTGG+AGG | + | chr5.2:41431103-41431122 | None:intergenic | 30.0% |
| !!! | CTGTCATTTTCTTTGGATAT+TGG | + | chr5.2:41432789-41432808 | None:intergenic | 30.0% |
| AACTTCAAATCCTGTGATGA+TGG | - | chr5.2:41431368-41431387 | MS.gene99998:CDS | 35.0% | |
| AAGAAAAGAGATGGTGAGAA+AGG | + | chr5.2:41432982-41433001 | None:intergenic | 35.0% | |
| AAGATCAGACAAAAACTTCC+CGG | + | chr5.2:41431228-41431247 | None:intergenic | 35.0% | |
| ATAGTTGGATCTTCTTCAGA+TGG | + | chr5.2:41431752-41431771 | None:intergenic | 35.0% | |
| ATCATGTTCACATGTTTCCT+TGG | + | chr5.2:41432279-41432298 | None:intergenic | 35.0% | |
| ATTGACCGTTGAACCATTTA+TGG | - | chr5.2:41432050-41432069 | MS.gene99998:intron | 35.0% | |
| CAACTATCAGTGAAGAAAGA+CGG | - | chr5.2:41431765-41431784 | MS.gene99998:intron | 35.0% | |
| CAACTCTTAAATACCATAGC+AGG | - | chr5.2:41432211-41432230 | MS.gene99998:intron | 35.0% | |
| CATAAAGAACAGGATCATAG+AGG | - | chr5.2:41431656-41431675 | MS.gene99998:intron | 35.0% | |
| CCAAAGAAAATGACAGTGTT+TGG | - | chr5.2:41432793-41432812 | MS.gene99998:CDS | 35.0% | |
| CCATTATCATGTGATGAAGA+AGG | - | chr5.2:41431488-41431507 | MS.gene99998:CDS | 35.0% | |
| CCTTCTTCATCACATGATAA+TGG | + | chr5.2:41431491-41431510 | None:intergenic | 35.0% | |
| CTTCAACGAAATAACTGTGA+AGG | - | chr5.2:41431110-41431129 | MS.gene99998:CDS | 35.0% | |
| GAAACAAAGCAGTGAACATA+CGG | - | chr5.2:41432701-41432720 | MS.gene99998:CDS | 35.0% | |
| GCAGAAGAAAGAAAACGTAT+TGG | - | chr5.2:41431793-41431812 | MS.gene99998:intron | 35.0% | |
| GGAAGTAATTGATGCTTACA+TGG | - | chr5.2:41431709-41431728 | MS.gene99998:intron | 35.0% | |
| GGCAAAAAGAGTTCGAAAAA+TGG | - | chr5.2:41433072-41433091 | MS.gene99998:CDS | 35.0% | |
| TAACAATTTCTGCACGAAGA+AGG | - | chr5.2:41431537-41431556 | MS.gene99998:CDS | 35.0% | |
| TATGATGATCAAGGTTCACA+TGG | - | chr5.2:41431017-41431036 | MS.gene99998:CDS | 35.0% | |
| TCAACTGATGCTACTAATCT+TGG | - | chr5.2:41432759-41432778 | MS.gene99998:CDS | 35.0% | |
| TGAGGTGTGTGACTAAAATT+TGG | - | chr5.2:41431910-41431929 | MS.gene99998:CDS | 35.0% | |
| TTATCATGTGATGAAGAAGG+TGG | - | chr5.2:41431491-41431510 | MS.gene99998:CDS | 35.0% | |
| ! | AGTTTTTGTCTGATCTTTCC+TGG | - | chr5.2:41431231-41431250 | MS.gene99998:CDS | 35.0% |
| ! | TGAAACCTTTAAAGATGACG+CGG | + | chr5.2:41431264-41431283 | None:intergenic | 35.0% |
| !! | GATAATGGAGACTCATTGTA+TGG | + | chr5.2:41431476-41431495 | None:intergenic | 35.0% |
| !! | TAACTTTTGGAAAATCGCAG+TGG | + | chr5.2:41432460-41432479 | None:intergenic | 35.0% |
| !! | TGCATGTTTTCTTTGAGTTC+AGG | + | chr5.2:41432828-41432847 | None:intergenic | 35.0% |
| !! | TTCTTTTAGGTGGGATTCAT+CGG | - | chr5.2:41431166-41431185 | MS.gene99998:CDS | 35.0% |
| !!! | CCAAACACTGTCATTTTCTT+TGG | + | chr5.2:41432796-41432815 | None:intergenic | 35.0% |
| AAAATGGAATGTTCCCATGC+CGG | - | chr5.2:41433088-41433107 | MS.gene99998:CDS | 40.0% | |
| AAAGAACAGGATCATAGAGG+TGG | - | chr5.2:41431659-41431678 | MS.gene99998:intron | 40.0% | |
| ACACCCTATTGTTCTTGTCA+TGG | - | chr5.2:41433244-41433263 | MS.gene99998:CDS | 40.0% | |
| AGCCCATGACAAGAACAATA+GGG | + | chr5.2:41433250-41433269 | None:intergenic | 40.0% | |
| ATATCCAATGGTAGGTGGAA+AGG | - | chr5.2:41432658-41432677 | MS.gene99998:CDS | 40.0% | |
| CACCCTATTGTTCTTGTCAT+GGG | - | chr5.2:41433245-41433264 | MS.gene99998:CDS | 40.0% | |
| CAGATGTGGATAAGATACAC+CGG | + | chr5.2:41433110-41433129 | None:intergenic | 40.0% | |
| CCTGGAGTTCCAAATTCTAA+TGG | - | chr5.2:41433173-41433192 | MS.gene99998:CDS | 40.0% | |
| CGTCTTTCTTCACTGATAGT+TGG | + | chr5.2:41431767-41431786 | None:intergenic | 40.0% | |
| GAAAAACATTGCAGGGTCTA+TGG | - | chr5.2:41432881-41432900 | MS.gene99998:CDS | 40.0% | |
| GAAAAATCTGACACAACTGG+TGG | - | chr5.2:41432921-41432940 | MS.gene99998:CDS | 40.0% | |
| GAGTGGTCCAAAGGTTAATA+AGG | - | chr5.2:41431394-41431413 | MS.gene99998:CDS | 40.0% | |
| TAGATTGTGGCAATGAAGAG+CGG | + | chr5.2:41431196-41431215 | None:intergenic | 40.0% | |
| TAGCCCATGACAAGAACAAT+AGG | + | chr5.2:41433251-41433270 | None:intergenic | 40.0% | |
| TGTGTTATATCTCATGCTCC+TGG | - | chr5.2:41432945-41432964 | MS.gene99998:CDS | 40.0% | |
| TGTTACCGCGTCATCTTTAA+AGG | - | chr5.2:41431256-41431275 | MS.gene99998:CDS | 40.0% | |
| TTCGACGACACCAAAATCAA+TGG | - | chr5.2:41433145-41433164 | MS.gene99998:CDS | 40.0% | |
| TTGGATCTTCTTCAGATGGT+AGG | + | chr5.2:41431748-41431767 | None:intergenic | 40.0% | |
| ! | AAAATCACACTGAAAGCGCA+TGG | - | chr5.2:41433311-41433330 | MS.gene99998:CDS | 40.0% |
| ! | CACAATCTAGGTTACTTTCC+GGG | - | chr5.2:41431207-41431226 | MS.gene99998:CDS | 40.0% |
| ! | CCAAAATCAATGGTTCTACC+TGG | - | chr5.2:41433155-41433174 | MS.gene99998:CDS | 40.0% |
| ! | CCACAATCTAGGTTACTTTC+CGG | - | chr5.2:41431206-41431225 | MS.gene99998:CDS | 40.0% |
| ! | CCATTAGAATTTGGAACTCC+AGG | + | chr5.2:41433176-41433195 | None:intergenic | 40.0% |
| ! | TTTTCACAAAGCCGCATGTA+CGG | + | chr5.2:41432334-41432353 | None:intergenic | 40.0% |
| ! | TTTTTGCCATGTGTAGAGTG+TGG | + | chr5.2:41433060-41433079 | None:intergenic | 40.0% |
| !! | GTTTGAAATCATGGTGGATC+TGG | + | chr5.2:41432525-41432544 | None:intergenic | 40.0% |
| !!! | CCAGGTAGAACCATTGATTT+TGG | + | chr5.2:41433158-41433177 | None:intergenic | 40.0% |
| ACCACTCTTACCATCATCAC+AGG | + | chr5.2:41431381-41431400 | None:intergenic | 45.0% | |
| AGCATCAATTACTTCCTCGC+AGG | + | chr5.2:41431705-41431724 | None:intergenic | 45.0% | |
| CAAAGACCACACTCTACACA+TGG | - | chr5.2:41433051-41433070 | MS.gene99998:CDS | 45.0% | |
| CAATTTCTGCACGAAGAAGG+CGG | - | chr5.2:41431540-41431559 | MS.gene99998:CDS | 45.0% | |
| CATGTGTAGAGTGTGGTCTT+TGG | + | chr5.2:41433053-41433072 | None:intergenic | 45.0% | |
| CCGGAAAGTAACCTAGATTG+TGG | + | chr5.2:41431209-41431228 | None:intergenic | 45.0% | |
| GAAAACGTATTGGAAAGCGG+TGG | - | chr5.2:41431803-41431822 | MS.gene99998:intron | 45.0% | |
| GCTCTTCATTGCCACAATCT+AGG | - | chr5.2:41431195-41431214 | MS.gene99998:CDS | 45.0% | |
| GGAATATACTGCCGTACATG+CGG | - | chr5.2:41432320-41432339 | MS.gene99998:intron | 45.0% | |
| GGTAGGTGGAAAGGCTAAAA+TGG | - | chr5.2:41432667-41432686 | MS.gene99998:CDS | 45.0% | |
| GTTAAATGCTGATACCTGCG+AGG | - | chr5.2:41431688-41431707 | MS.gene99998:intron | 45.0% | |
| TGATGGTAAGAGTGGTCCAA+AGG | - | chr5.2:41431385-41431404 | MS.gene99998:CDS | 45.0% | |
| TGGATAAGATACACCGGCAT+GGG | + | chr5.2:41433104-41433123 | None:intergenic | 45.0% | |
| ! | AGAAAGGTTTTTCCAGCTCC+AGG | + | chr5.2:41432966-41432985 | None:intergenic | 45.0% |
| ! | TTAGCCTTTCCACCTACCAT+TGG | + | chr5.2:41432665-41432684 | None:intergenic | 45.0% |
| !! | GTCTTTGGAGCTAGGACTAA+TGG | + | chr5.2:41433038-41433057 | None:intergenic | 45.0% |
| !! | TCCTGTGATGATGGTAAGAG+TGG | - | chr5.2:41431377-41431396 | MS.gene99998:CDS | 45.0% |
| ACGAAGAAGGCGGATCTGTA+AGG | - | chr5.2:41431550-41431569 | MS.gene99998:CDS | 50.0% | |
| AGATGACGCGGTAACAAACC+AGG | + | chr5.2:41431252-41431271 | None:intergenic | 50.0% | |
| ATATCTCATGCTCCTGGAGC+TGG | - | chr5.2:41432951-41432970 | MS.gene99998:CDS | 50.0% | |
| GTGGATAAGATACACCGGCA+TGG | + | chr5.2:41433105-41433124 | None:intergenic | 50.0% | |
| TCAGCATTTGCACCCTGCTA+TGG | + | chr5.2:41432227-41432246 | None:intergenic | 50.0% | |
| ! | GCGGATCTGTAAGGAGCATA+TGG | - | chr5.2:41431559-41431578 | MS.gene99998:CDS | 50.0% |
| !! | AGAGTGTGGTCTTTGGAGCT+AGG | + | chr5.2:41433046-41433065 | None:intergenic | 50.0% |
| !! | TTGGTGTCGTCGAATGTCTC+TGG | + | chr5.2:41433139-41433158 | None:intergenic | 50.0% |
| CGTATTGGAAAGCGGTGGTG+AGG | - | chr5.2:41431808-41431827 | MS.gene99998:intron | 55.0% | |
| GCAGGGTGCAAATGCTGATG+AGG | - | chr5.2:41432229-41432248 | MS.gene99998:intron | 55.0% | |
| ! | GTCTCTGGCTTCGACAGATG+TGG | + | chr5.2:41433124-41433143 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 41430933 | 41433337 | 41430933 | ID=MS.gene99998 |
| chr5.2 | mRNA | 41430933 | 41433337 | 41430933 | ID=MS.gene99998.t1;Parent=MS.gene99998 |
| chr5.2 | exon | 41432441 | 41433337 | 41432441 | ID=MS.gene99998.t1.exon1;Parent=MS.gene99998.t1 |
| chr5.2 | CDS | 41432441 | 41433337 | 41432441 | ID=cds.MS.gene99998.t1;Parent=MS.gene99998.t1 |
| chr5.2 | exon | 41431888 | 41432037 | 41431888 | ID=MS.gene99998.t1.exon2;Parent=MS.gene99998.t1 |
| chr5.2 | CDS | 41431888 | 41432037 | 41431888 | ID=cds.MS.gene99998.t1;Parent=MS.gene99998.t1 |
| chr5.2 | exon | 41430933 | 41431598 | 41430933 | ID=MS.gene99998.t1.exon3;Parent=MS.gene99998.t1 |
| chr5.2 | CDS | 41430933 | 41431598 | 41430933 | ID=cds.MS.gene99998.t1;Parent=MS.gene99998.t1 |
| Gene Sequence |
| Protein sequence |
