Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048471.01.T01 | XP_003600453.1 | 78.521 | 284 | 60 | 1 | 1 | 284 | 1 | 283 | 7.06E-159 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048471.01.T01 | Q8L3W1 | 27.246 | 345 | 176 | 12 | 8 | 286 | 1 | 336 | 8.60E-30 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048471.01.T01 | G8A2Z4 | 78.521 | 284 | 60 | 1 | 1 | 284 | 1 | 283 | 3.37e-159 | 454 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0080048471.01.T01 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048471.01.T01 | MTR_3g061350 | 78.521 | 284 | 60 | 1 | 1 | 284 | 1 | 283 | 8.55e-163 | 454 |
| MsG0080048471.01.T01 | MTR_3g061370 | 79.577 | 284 | 54 | 2 | 1 | 284 | 1 | 280 | 3.88e-162 | 452 |
| MsG0080048471.01.T01 | MTR_3g061330 | 87.302 | 252 | 31 | 1 | 1 | 252 | 1 | 251 | 2.34e-160 | 446 |
| MsG0080048471.01.T01 | MTR_3g061320 | 75.704 | 284 | 63 | 4 | 1 | 284 | 1 | 278 | 2.78e-151 | 424 |
| MsG0080048471.01.T01 | MTR_3g061340 | 72.727 | 286 | 65 | 5 | 1 | 285 | 1 | 274 | 5.92e-144 | 405 |
| MsG0080048471.01.T01 | MTR_3g061310 | 70.526 | 285 | 82 | 2 | 1 | 284 | 1 | 284 | 3.46e-142 | 402 |
| MsG0080048471.01.T01 | MTR_3g061290 | 80.625 | 160 | 30 | 1 | 1 | 160 | 1 | 159 | 4.93e-91 | 269 |
| MsG0080048471.01.T01 | MTR_3g061220 | 70.455 | 132 | 24 | 3 | 1 | 132 | 1 | 117 | 3.28e-57 | 179 |
| MsG0080048471.01.T01 | MTR_3g061300 | 67.717 | 127 | 40 | 1 | 163 | 289 | 2 | 127 | 7.49e-55 | 174 |
| MsG0080048471.01.T01 | MTR_1g035460 | 36.860 | 293 | 146 | 8 | 26 | 286 | 2 | 287 | 1.34e-49 | 169 |
| MsG0080048471.01.T01 | MTR_8g103940 | 33.438 | 317 | 161 | 8 | 4 | 286 | 31 | 331 | 3.41e-46 | 162 |
| MsG0080048471.01.T01 | MTR_8g103940 | 26.502 | 283 | 171 | 10 | 12 | 286 | 242 | 495 | 1.91e-13 | 70.5 |
| MsG0080048471.01.T01 | MTR_1g108780 | 33.555 | 301 | 149 | 8 | 21 | 288 | 10 | 292 | 1.07e-43 | 155 |
| MsG0080048471.01.T01 | MTR_1g108780 | 37.692 | 130 | 74 | 4 | 163 | 286 | 330 | 458 | 1.03e-14 | 74.3 |
| MsG0080048471.01.T01 | MTR_7g050560 | 34.653 | 303 | 151 | 11 | 9 | 286 | 10 | 290 | 1.28e-42 | 149 |
| MsG0080048471.01.T01 | MTR_7g050710 | 33.115 | 305 | 170 | 8 | 9 | 286 | 10 | 307 | 1.59e-42 | 149 |
| MsG0080048471.01.T01 | MTR_3g098790 | 32.414 | 290 | 184 | 6 | 9 | 286 | 10 | 299 | 4.02e-42 | 147 |
| MsG0080048471.01.T01 | MTR_5g044670 | 30.537 | 298 | 174 | 9 | 12 | 286 | 16 | 303 | 1.94e-40 | 143 |
| MsG0080048471.01.T01 | MTR_7g050580 | 32.759 | 290 | 174 | 8 | 9 | 286 | 10 | 290 | 2.03e-37 | 135 |
| MsG0080048471.01.T01 | MTR_7g050720 | 32.390 | 318 | 179 | 12 | 5 | 289 | 3 | 317 | 5.48e-36 | 131 |
| MsG0080048471.01.T01 | MTR_1g035640 | 31.802 | 283 | 174 | 7 | 12 | 286 | 9 | 280 | 1.35e-35 | 133 |
| MsG0080048471.01.T01 | MTR_7g050590 | 30.479 | 292 | 159 | 9 | 26 | 286 | 2 | 280 | 1.04e-31 | 119 |
| MsG0080048471.01.T01 | MTR_4g119990 | 31.922 | 307 | 168 | 13 | 10 | 284 | 13 | 310 | 2.78e-30 | 117 |
| MsG0080048471.01.T01 | MTR_1g034210 | 26.593 | 361 | 170 | 12 | 12 | 286 | 7 | 358 | 2.59e-28 | 112 |
| MsG0080048471.01.T01 | MTR_1g035570 | 26.621 | 293 | 183 | 8 | 12 | 286 | 9 | 287 | 1.97e-27 | 110 |
| MsG0080048471.01.T01 | MTR_6g043890 | 29.097 | 299 | 156 | 10 | 10 | 272 | 13 | 291 | 1.82e-26 | 106 |
| MsG0080048471.01.T01 | MTR_3g005480 | 28.523 | 298 | 160 | 8 | 2 | 286 | 3 | 260 | 1.96e-26 | 105 |
| MsG0080048471.01.T01 | MTR_3g005490 | 28.188 | 298 | 157 | 8 | 3 | 286 | 5 | 259 | 8.82e-26 | 103 |
| MsG0080048471.01.T01 | MTR_5g070440 | 28.058 | 278 | 167 | 6 | 12 | 286 | 21 | 268 | 1.31e-24 | 100 |
| MsG0080048471.01.T01 | MTR_1g035620 | 26.780 | 295 | 178 | 10 | 9 | 286 | 6 | 279 | 1.27e-23 | 99.8 |
| MsG0080048471.01.T01 | MTR_6g061070 | 26.667 | 315 | 181 | 8 | 8 | 285 | 20 | 321 | 3.24e-23 | 99.0 |
| MsG0080048471.01.T01 | MTR_3g005420 | 28.417 | 278 | 166 | 4 | 12 | 286 | 289 | 536 | 8.70e-23 | 98.2 |
| MsG0080048471.01.T01 | MTR_3g005420 | 26.259 | 278 | 137 | 9 | 12 | 279 | 40 | 259 | 2.41e-14 | 73.2 |
| MsG0080048471.01.T01 | MTR_1g034240 | 37.313 | 134 | 79 | 3 | 8 | 136 | 1 | 134 | 6.76e-22 | 95.1 |
| MsG0080048471.01.T01 | MTR_1g050845 | 25.874 | 286 | 180 | 7 | 9 | 286 | 6 | 267 | 1.13e-21 | 95.5 |
| MsG0080048471.01.T01 | MTR_4g068320 | 36.364 | 132 | 75 | 2 | 12 | 134 | 6 | 137 | 1.51e-21 | 94.0 |
| MsG0080048471.01.T01 | MTR_3g005495 | 28.322 | 286 | 146 | 9 | 4 | 279 | 231 | 467 | 1.33e-20 | 91.7 |
| MsG0080048471.01.T01 | MTR_3g005495 | 40.476 | 84 | 50 | 0 | 25 | 108 | 28 | 111 | 5.00e-14 | 72.4 |
| MsG0080048471.01.T01 | MTR_3g005460 | 27.211 | 294 | 171 | 7 | 1 | 282 | 251 | 513 | 1.45e-20 | 91.7 |
| MsG0080048471.01.T01 | MTR_3g005460 | 25.735 | 272 | 144 | 5 | 12 | 279 | 25 | 242 | 3.21e-15 | 75.9 |
| MsG0080048471.01.T01 | MTR_1g035650 | 42.308 | 104 | 56 | 2 | 9 | 110 | 6 | 107 | 5.97e-20 | 86.3 |
| MsG0080048471.01.T01 | MTR_1g021360 | 25.249 | 301 | 193 | 8 | 10 | 288 | 182 | 472 | 6.63e-20 | 89.7 |
| MsG0080048471.01.T01 | MTR_7g050640 | 44.792 | 96 | 51 | 1 | 10 | 103 | 11 | 106 | 1.14e-19 | 82.8 |
| MsG0080048471.01.T01 | MTR_1g035440 | 42.308 | 104 | 57 | 2 | 8 | 108 | 11 | 114 | 4.22e-19 | 84.7 |
| MsG0080048471.01.T01 | MTR_1g034210 | 40.741 | 108 | 60 | 2 | 12 | 117 | 7 | 112 | 6.07e-19 | 85.5 |
| MsG0080048471.01.T01 | MTR_1g035520 | 27.356 | 329 | 180 | 14 | 4 | 285 | 67 | 383 | 5.14e-18 | 83.6 |
| MsG0080048471.01.T01 | MTR_1g021435 | 22.840 | 324 | 184 | 11 | 22 | 284 | 34 | 352 | 1.20e-16 | 79.7 |
| MsG0080048471.01.T01 | MTR_1g033740 | 32.168 | 143 | 88 | 5 | 10 | 146 | 20 | 159 | 3.46e-15 | 72.8 |
| MsG0080048471.01.T01 | MTR_3g005440 | 37.500 | 96 | 60 | 0 | 13 | 108 | 23 | 118 | 9.03e-15 | 74.3 |
| MsG0080048471.01.T01 | MTR_3g005440 | 41.379 | 87 | 51 | 0 | 22 | 108 | 254 | 340 | 9.07e-13 | 68.6 |
| MsG0080048471.01.T01 | MTR_3g005420 | 26.259 | 278 | 137 | 9 | 12 | 279 | 21 | 240 | 1.71e-14 | 73.6 |
| MsG0080048471.01.T01 | MTR_1g035480 | 32.331 | 133 | 80 | 5 | 10 | 135 | 15 | 144 | 6.22e-14 | 68.9 |
| MsG0080048471.01.T01 | MTR_1g035510 | 36.842 | 114 | 64 | 4 | 26 | 135 | 2 | 111 | 1.09e-13 | 69.3 |
| MsG0080048471.01.T01 | MTR_1g035470 | 35.088 | 114 | 67 | 3 | 26 | 135 | 2 | 112 | 2.27e-12 | 63.9 |
| MsG0080048471.01.T01 | MTR_1g035500 | 30.496 | 141 | 88 | 5 | 2 | 135 | 15 | 152 | 1.42e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048471.01.T01 | AT3G18990 | 27.246 | 345 | 176 | 12 | 8 | 286 | 1 | 336 | 8.77e-31 | 118 |
| MsG0080048471.01.T01 | AT3G18990 | 27.246 | 345 | 176 | 12 | 8 | 286 | 1 | 336 | 1.79e-30 | 118 |
| MsG0080048471.01.T01 | AT1G49475 | 37.143 | 140 | 73 | 4 | 11 | 137 | 33 | 170 | 1.78e-18 | 81.6 |
| MsG0080048471.01.T01 | AT4G01580 | 32.143 | 140 | 84 | 4 | 11 | 147 | 29 | 160 | 1.28e-15 | 73.9 |
| MsG0080048471.01.T01 | AT4G33280 | 25.000 | 288 | 192 | 9 | 10 | 276 | 23 | 307 | 3.63e-15 | 75.1 |
| MsG0080048471.01.T01 | AT3G18960 | 35.000 | 100 | 63 | 1 | 11 | 108 | 29 | 128 | 7.31e-15 | 72.4 |
| MsG0080048471.01.T01 | AT3G18960 | 35.000 | 100 | 63 | 1 | 11 | 108 | 29 | 128 | 8.17e-15 | 72.0 |
| MsG0080048471.01.T01 | AT3G18960 | 36.905 | 84 | 53 | 0 | 25 | 108 | 8 | 91 | 3.13e-12 | 64.3 |
| MsG0080048471.01.T01 | AT1G49480 | 29.851 | 134 | 77 | 5 | 161 | 286 | 97 | 221 | 4.20e-12 | 64.7 |
| MsG0080048471.01.T01 | AT1G49480 | 29.851 | 134 | 77 | 5 | 161 | 286 | 97 | 221 | 4.20e-12 | 64.7 |
| MsG0080048471.01.T01 | AT1G49480 | 29.851 | 134 | 77 | 5 | 161 | 286 | 97 | 221 | 4.20e-12 | 64.7 |
Find 49 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGATTTAAAAGGGATTAT+TGG | 0.203070 | contig329end:+11720 | MsG0080048471.01.T01:CDS |
| AAGTTTGATGTACACATATT+TGG | 0.204865 | contig329end:+11103 | MsG0080048471.01.T01:CDS |
| TGATGAATCAGTTGAGATTT+TGG | 0.207341 | contig329end:+11204 | MsG0080048471.01.T01:CDS |
| CTCTCTTGGACATGGCTCTT+TGG | 0.220059 | contig329end:+11054 | MsG0080048471.01.T01:CDS |
| GCACTAAATGGAAAGTTTAT+TGG | 0.220986 | contig329end:+10972 | MsG0080048471.01.T01:CDS |
| CGTTATTCCAAGACTTTAAA+TGG | 0.227584 | contig329end:+11804 | MsG0080048471.01.T01:CDS |
| TTAGTACCTTTAGATTTAAA+AGG | 0.234610 | contig329end:+11711 | MsG0080048471.01.T01:CDS |
| TAGATTTAAAAGGGATTATT+GGG | 0.268653 | contig329end:+11721 | MsG0080048471.01.T01:CDS |
| AGCCTCCTGATGGCACTAAA+TGG | 0.283589 | contig329end:+10960 | MsG0080048471.01.T01:CDS |
| CAATCCTTTGAAGATTAGTT+TGG | 0.289306 | contig329end:-10610 | MsG0080048471.01.T01:intergenic |
| AATCTATTTCTACAGCATTC+TGG | 0.311518 | contig329end:-11126 | MsG0080048471.01.T01:intergenic |
| TGAAATTGTGAGCTACTTCC+TGG | 0.324594 | contig329end:-11500 | MsG0080048471.01.T01:intergenic |
| CCAGCTGATGATATACTATA+TGG | 0.344798 | contig329end:-11563 | MsG0080048471.01.T01:intergenic |
| TCCTGGGCTCTAGCATCCTT+TGG | 0.368511 | contig329end:-11483 | MsG0080048471.01.T01:intergenic |
| AAAGAACTTCATCTATGAAT+TGG | 0.385736 | contig329end:+11460 | MsG0080048471.01.T01:CDS |
| TTTAAATGGTCGCCGCTTAT+CGG | 0.398081 | contig329end:+11818 | MsG0080048471.01.T01:CDS |
| GCGGCGACCATTTAAAGTCT+TGG | 0.422522 | contig329end:-11811 | MsG0080048471.01.T01:intergenic |
| TGGTGTGATTTGGTTTGAAA+AGG | 0.433086 | contig329end:+11006 | MsG0080048471.01.T01:CDS |
| ACTTTCCATTTAGTGCCATC+AGG | 0.440549 | contig329end:-10965 | MsG0080048471.01.T01:intergenic |
| CATTTAAAGTCTTGGAATAA+CGG | 0.445525 | contig329end:-11803 | MsG0080048471.01.T01:intergenic |
| AAGAATGTTACTCTGCAGAT+TGG | 0.460536 | contig329end:+11753 | MsG0080048471.01.T01:CDS |
| AGAATGTTACTCTGCAGATT+GGG | 0.463483 | contig329end:+11754 | MsG0080048471.01.T01:CDS |
| TTGGTTGTGTTTGAATATGA+AGG | 0.469723 | contig329end:+11073 | MsG0080048471.01.T01:CDS |
| ACTTGCAAACAAGGACCAAC+CGG | 0.475039 | contig329end:-11841 | MsG0080048471.01.T01:intergenic |
| AAATATGTGTACATCAAACT+TGG | 0.477926 | contig329end:-11101 | MsG0080048471.01.T01:intergenic |
| TAGTACCTTTAGATTTAAAA+GGG | 0.481390 | contig329end:+11712 | MsG0080048471.01.T01:CDS |
| AAATACCAAGTAAGTTTACT+AGG | 0.486071 | contig329end:+10900 | MsG0080048471.01.T01:CDS |
| TCCACTTTCACTTGCAAACA+AGG | 0.494173 | contig329end:-11850 | MsG0080048471.01.T01:intergenic |
| TGATTTGGTTTGAAAAGGGT+TGG | 0.498157 | contig329end:+11011 | MsG0080048471.01.T01:CDS |
| AATGGTCGCCGCTTATCGGC+CGG | 0.500181 | contig329end:+11822 | MsG0080048471.01.T01:CDS |
| GGTGTGATTTGGTTTGAAAA+GGG | 0.507291 | contig329end:+11007 | MsG0080048471.01.T01:CDS |
| TTCTCCAAACTAATCTTCAA+AGG | 0.509962 | contig329end:+10606 | MsG0080048471.01.T01:CDS |
| TTTATATGGTCGAGGAGAAA+CGG | 0.524002 | contig329end:-11269 | MsG0080048471.01.T01:intergenic |
| TGTCTCCTAGTAAACTTACT+TGG | 0.535374 | contig329end:-10905 | MsG0080048471.01.T01:intergenic |
| TCCTTGTTTGCAAGTGAAAG+TGG | 0.537639 | contig329end:+11849 | MsG0080048471.01.T01:CDS |
| AGTAGAATTTCTTCTAGCCA+TGG | 0.544196 | contig329end:-10558 | MsG0080048471.01.T01:intergenic |
| TCAGGAGGCTTTATCAACAC+TGG | 0.549585 | contig329end:-10947 | MsG0080048471.01.T01:intergenic |
| CCATATAGTATATCATCAGC+TGG | 0.557172 | contig329end:+11563 | MsG0080048471.01.T01:CDS |
| GCCAAAGGATGCTAGAGCCC+AGG | 0.562636 | contig329end:+11482 | MsG0080048471.01.T01:CDS |
| AGGACCAACCGGCCGATAAG+CGG | 0.567476 | contig329end:-11830 | MsG0080048471.01.T01:intergenic |
| GTCGCCGCTTATCGGCCGGT+TGG | 0.573537 | contig329end:+11826 | MsG0080048471.01.T01:CDS |
| TGAATGGCTTAATCGGAAGA+AGG | 0.588393 | contig329end:+11228 | MsG0080048471.01.T01:CDS |
| TTCATCTATGAATTGGCCAA+AGG | 0.605255 | contig329end:+11467 | MsG0080048471.01.T01:CDS |
| TTCCATTTAGTGCCATCAGG+AGG | 0.615384 | contig329end:-10962 | MsG0080048471.01.T01:intergenic |
| GAAATTGTGAGCTACTTCCT+GGG | 0.616830 | contig329end:-11499 | MsG0080048471.01.T01:intergenic |
| AGTAAGTTTACTAGGAGACA+TGG | 0.620165 | contig329end:+10908 | MsG0080048471.01.T01:CDS |
| GTGTTGATAAAGCCTCCTGA+TGG | 0.632454 | contig329end:+10950 | MsG0080048471.01.T01:CDS |
| TATGGTCGAGGAGAAACGGA+AGG | 0.680548 | contig329end:-11265 | MsG0080048471.01.T01:intergenic |
| AGTGAAAGTGGACTACAACA+AGG | 0.695374 | contig329end:+11861 | MsG0080048471.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAATAGTAATAATATAAT+AGG | - | contig329end:10644-10663 | MsG0080048471.01.T01:intergenic | 10.0% |
| !! | GTATACTGAAAAGAAAATTA+AGG | - | contig329end:11318-11337 | MsG0080048471.01.T01:intergenic | 20.0% |
| !! | GTTTATTGGAAAAAAATCAA+TGG | + | contig329end:10986-11005 | MsG0080048471.01.T01:CDS | 20.0% |
| !! | TAGATTTAAAAGGGATTATT+GGG | + | contig329end:11721-11740 | MsG0080048471.01.T01:CDS | 20.0% |
| !! | TAGTACCTTTAGATTTAAAA+GGG | + | contig329end:11712-11731 | MsG0080048471.01.T01:CDS | 20.0% |
| !! | TTAGATTTAAAAGGGATTAT+TGG | + | contig329end:11720-11739 | MsG0080048471.01.T01:CDS | 20.0% |
| !! | TTAGTACCTTTAGATTTAAA+AGG | + | contig329end:11711-11730 | MsG0080048471.01.T01:CDS | 20.0% |
| !! | TTTACTAAAAATTACTCTCT+TGG | + | contig329end:11040-11059 | MsG0080048471.01.T01:CDS | 20.0% |
| !!! | ATAATCCCTTTTAAATCTAA+AGG | - | contig329end:11720-11739 | MsG0080048471.01.T01:intergenic | 20.0% |
| !!! | TAGCACTAGAAATTTTATTA+TGG | + | contig329end:10777-10796 | MsG0080048471.01.T01:intron | 20.0% |
| !!! | TTTCTTTTCAGTATACATAA+TGG | + | contig329end:11322-11341 | MsG0080048471.01.T01:intron | 20.0% |
| ! | AAAAAATCAATGGTGTGATT+TGG | + | contig329end:10996-11015 | MsG0080048471.01.T01:CDS | 25.0% |
| ! | AAAGAACTTCATCTATGAAT+TGG | + | contig329end:11460-11479 | MsG0080048471.01.T01:CDS | 25.0% |
| ! | AAATACCAAGTAAGTTTACT+AGG | + | contig329end:10900-10919 | MsG0080048471.01.T01:CDS | 25.0% |
| ! | AAATATGTGTACATCAAACT+TGG | - | contig329end:11104-11123 | MsG0080048471.01.T01:intergenic | 25.0% |
| ! | AAGTTTGATGTACACATATT+TGG | + | contig329end:11103-11122 | MsG0080048471.01.T01:CDS | 25.0% |
| ! | ATACAATTGTTCTTTCTAGA+AGG | - | contig329end:10832-10851 | MsG0080048471.01.T01:intergenic | 25.0% |
| ! | ATATAAAAAAGTTCGAGGTT+TGG | + | contig329end:11285-11304 | MsG0080048471.01.T01:intron | 25.0% |
| ! | TAAAAATTAAAGAACCCCTT+TGG | - | contig329end:10876-10895 | MsG0080048471.01.T01:intergenic | 25.0% |
| ! | TTCATGAGAATTGTGAAAAA+AGG | - | contig329end:11537-11556 | MsG0080048471.01.T01:intergenic | 25.0% |
| !! | CATTTAAAGTCTTGGAATAA+CGG | - | contig329end:11806-11825 | MsG0080048471.01.T01:intergenic | 25.0% |
| !!! | AAACCTCGAACTTTTTTATA+TGG | - | contig329end:11286-11305 | MsG0080048471.01.T01:intergenic | 25.0% |
| AAAAATTACTCTCTTGGACA+TGG | + | contig329end:11046-11065 | MsG0080048471.01.T01:CDS | 30.0% | |
| CGTTATTCCAAGACTTTAAA+TGG | + | contig329end:11804-11823 | MsG0080048471.01.T01:CDS | 30.0% | |
| GCACTAAATGGAAAGTTTAT+TGG | + | contig329end:10972-10991 | MsG0080048471.01.T01:CDS | 30.0% | |
| TTACGTACATTAATCCATTC+TGG | + | contig329end:11604-11623 | MsG0080048471.01.T01:intron | 30.0% | |
| TTCTCCAAACTAATCTTCAA+AGG | + | contig329end:10606-10625 | MsG0080048471.01.T01:CDS | 30.0% | |
| TTGGTTGTGTTTGAATATGA+AGG | + | contig329end:11073-11092 | MsG0080048471.01.T01:CDS | 30.0% | |
| ! | CAATCCTTTGAAGATTAGTT+TGG | - | contig329end:10613-10632 | MsG0080048471.01.T01:intergenic | 30.0% |
| ! | TGATGAATCAGTTGAGATTT+TGG | + | contig329end:11204-11223 | MsG0080048471.01.T01:CDS | 30.0% |
| ! | TTTTGGATGAATGGCTTAAT+CGG | + | contig329end:11221-11240 | MsG0080048471.01.T01:CDS | 30.0% |
| !! | AATCTATTTCTACAGCATTC+TGG | - | contig329end:11129-11148 | MsG0080048471.01.T01:intergenic | 30.0% |
| !! | AATGATTTTGAAGAAACGGA+TGG | - | contig329end:10588-10607 | MsG0080048471.01.T01:intergenic | 30.0% |
| !! | ATGATTTTGAAGAAACGGAT+GGG | - | contig329end:10587-10606 | MsG0080048471.01.T01:intergenic | 30.0% |
| !! | GGAGAATGATTTTGAAGAAA+CGG | - | contig329end:10592-10611 | MsG0080048471.01.T01:intergenic | 30.0% |
| AAGAATGTTACTCTGCAGAT+TGG | + | contig329end:11753-11772 | MsG0080048471.01.T01:CDS | 35.0% | |
| AGAATGTTACTCTGCAGATT+GGG | + | contig329end:11754-11773 | MsG0080048471.01.T01:CDS | 35.0% | |
| AGTAAGTTTACTAGGAGACA+TGG | + | contig329end:10908-10927 | MsG0080048471.01.T01:CDS | 35.0% | |
| CCAGCTGATGATATACTATA+TGG | - | contig329end:11566-11585 | MsG0080048471.01.T01:intergenic | 35.0% | |
| CCATATAGTATATCATCAGC+TGG | + | contig329end:11563-11582 | MsG0080048471.01.T01:CDS | 35.0% | |
| CGACCATATAAAAAAGTTCG+AGG | + | contig329end:11280-11299 | MsG0080048471.01.T01:CDS | 35.0% | |
| TACATTGCACACATATATGC+AGG | + | contig329end:11417-11436 | MsG0080048471.01.T01:intron | 35.0% | |
| TATACATAGCATTGCCAGAA+TGG | - | contig329end:11621-11640 | MsG0080048471.01.T01:intergenic | 35.0% | |
| TGCAGATTGGGAAAAAATCA+TGG | + | contig329end:11766-11785 | MsG0080048471.01.T01:CDS | 35.0% | |
| TGTCTCCTAGTAAACTTACT+TGG | - | contig329end:10908-10927 | MsG0080048471.01.T01:intergenic | 35.0% | |
| TTCATCTATGAATTGGCCAA+AGG | + | contig329end:11467-11486 | MsG0080048471.01.T01:CDS | 35.0% | |
| TTTATATGGTCGAGGAGAAA+CGG | - | contig329end:11272-11291 | MsG0080048471.01.T01:intergenic | 35.0% | |
| ! | AAAAAGTTCGAGGTTTGGTT+TGG | + | contig329end:11290-11309 | MsG0080048471.01.T01:intron | 35.0% |
| ! | ACCATTTTCTAAGTGACCAA+AGG | + | contig329end:10857-10876 | MsG0080048471.01.T01:intron | 35.0% |
| ! | CAGTTGAGATTTTGGATGAA+TGG | + | contig329end:11212-11231 | MsG0080048471.01.T01:CDS | 35.0% |
| ! | CATTTTCTAAGTGACCAAAG+GGG | + | contig329end:10859-10878 | MsG0080048471.01.T01:intron | 35.0% |
| ! | CCATTTTCTAAGTGACCAAA+GGG | + | contig329end:10858-10877 | MsG0080048471.01.T01:intron | 35.0% |
| !! | GGTGTGATTTGGTTTGAAAA+GGG | + | contig329end:11007-11026 | MsG0080048471.01.T01:CDS | 35.0% |
| !! | TGATTTGGTTTGAAAAGGGT+TGG | + | contig329end:11011-11030 | MsG0080048471.01.T01:CDS | 35.0% |
| !! | TGATTTTGAAGAAACGGATG+GGG | - | contig329end:10586-10605 | MsG0080048471.01.T01:intergenic | 35.0% |
| !! | TGGTGTGATTTGGTTTGAAA+AGG | + | contig329end:11006-11025 | MsG0080048471.01.T01:CDS | 35.0% |
| !!! | CGAACTTTTTTATATGGTCG+AGG | - | contig329end:11280-11299 | MsG0080048471.01.T01:intergenic | 35.0% |
| ACTTTCCATTTAGTGCCATC+AGG | - | contig329end:10968-10987 | MsG0080048471.01.T01:intergenic | 40.0% | |
| CCCTTTGGTCACTTAGAAAA+TGG | - | contig329end:10861-10880 | MsG0080048471.01.T01:intergenic | 40.0% | |
| GAAATTGTGAGCTACTTCCT+GGG | - | contig329end:11502-11521 | MsG0080048471.01.T01:intergenic | 40.0% | |
| TCCACTTTCACTTGCAAACA+AGG | - | contig329end:11853-11872 | MsG0080048471.01.T01:intergenic | 40.0% | |
| TGAAATTGTGAGCTACTTCC+TGG | - | contig329end:11503-11522 | MsG0080048471.01.T01:intergenic | 40.0% | |
| TGAATGGCTTAATCGGAAGA+AGG | + | contig329end:11228-11247 | MsG0080048471.01.T01:CDS | 40.0% | |
| TGTGTGCAATGTAAAACTCG+TGG | - | contig329end:11410-11429 | MsG0080048471.01.T01:intergenic | 40.0% | |
| TTTAAATGGTCGCCGCTTAT+CGG | + | contig329end:11818-11837 | MsG0080048471.01.T01:CDS | 40.0% | |
| ! | TCCTTGTTTGCAAGTGAAAG+TGG | + | contig329end:11849-11868 | MsG0080048471.01.T01:CDS | 40.0% |
| !! | AGTGAAAGTGGACTACAACA+AGG | + | contig329end:11861-11880 | MsG0080048471.01.T01:CDS | 40.0% |
| ACTTGCAAACAAGGACCAAC+CGG | - | contig329end:11844-11863 | MsG0080048471.01.T01:intergenic | 45.0% | |
| TTCCATTTAGTGCCATCAGG+AGG | - | contig329end:10965-10984 | MsG0080048471.01.T01:intergenic | 45.0% | |
| ! | GTGTTGATAAAGCCTCCTGA+TGG | + | contig329end:10950-10969 | MsG0080048471.01.T01:CDS | 45.0% |
| ! | TCAGGAGGCTTTATCAACAC+TGG | - | contig329end:10950-10969 | MsG0080048471.01.T01:intergenic | 45.0% |
| AGCCTCCTGATGGCACTAAA+TGG | + | contig329end:10960-10979 | MsG0080048471.01.T01:CDS | 50.0% | |
| CATGTTGCAAGTGTGATGCG+TGG | - | contig329end:10688-10707 | MsG0080048471.01.T01:intergenic | 50.0% | |
| CTCTCTTGGACATGGCTCTT+TGG | + | contig329end:11054-11073 | MsG0080048471.01.T01:CDS | 50.0% | |
| TATGGTCGAGGAGAAACGGA+AGG | - | contig329end:11268-11287 | MsG0080048471.01.T01:intergenic | 50.0% | |
| ! | GCGGCGACCATTTAAAGTCT+TGG | - | contig329end:11814-11833 | MsG0080048471.01.T01:intergenic | 50.0% |
| ! | TCCTGGGCTCTAGCATCCTT+TGG | - | contig329end:11486-11505 | MsG0080048471.01.T01:intergenic | 55.0% |
| AATGGTCGCCGCTTATCGGC+CGG | + | contig329end:11822-11841 | MsG0080048471.01.T01:CDS | 60.0% | |
| AGGACCAACCGGCCGATAAG+CGG | - | contig329end:11833-11852 | MsG0080048471.01.T01:intergenic | 60.0% | |
| GCCAAAGGATGCTAGAGCCC+AGG | + | contig329end:11482-11501 | MsG0080048471.01.T01:CDS | 60.0% | |
| GTCGCCGCTTATCGGCCGGT+TGG | + | contig329end:11826-11845 | MsG0080048471.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig329end | gene | 10560 | 11959 | 10560 | ID=MsG0080048471.01;Name=MsG0080048471.01 |
| contig329end | mRNA | 10560 | 11959 | 10560 | ID=MsG0080048471.01.T01;Parent=MsG0080048471.01;Name=MsG0080048471.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|0.66|0.75|4|0|289 |
| contig329end | exon | 10560 | 10631 | 10560 | ID=MsG0080048471.01.T01:exon:17865;Parent=MsG0080048471.01.T01 |
| contig329end | exon | 10899 | 11301 | 10899 | ID=MsG0080048471.01.T01:exon:17866;Parent=MsG0080048471.01.T01 |
| contig329end | exon | 11439 | 11584 | 11439 | ID=MsG0080048471.01.T01:exon:17867;Parent=MsG0080048471.01.T01 |
| contig329end | exon | 11711 | 11959 | 11711 | ID=MsG0080048471.01.T01:exon:17868;Parent=MsG0080048471.01.T01 |
| contig329end | CDS | 10560 | 10631 | 10560 | ID=MsG0080048471.01.T01:cds;Parent=MsG0080048471.01.T01 |
| contig329end | CDS | 10899 | 11301 | 10899 | ID=MsG0080048471.01.T01:cds;Parent=MsG0080048471.01.T01 |
| contig329end | CDS | 11439 | 11584 | 11439 | ID=MsG0080048471.01.T01:cds;Parent=MsG0080048471.01.T01 |
| contig329end | CDS | 11711 | 11959 | 11711 | ID=MsG0080048471.01.T01:cds;Parent=MsG0080048471.01.T01 |
| Gene Sequence |
| Protein sequence |
