Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000372.01.T01 | XP_013465933.1 | 93.75 | 272 | 15 | 2 | 1 | 271 | 1 | 271 | 0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000372.01.T01 | P46604 | 47.791 | 249 | 115 | 7 | 1 | 245 | 1 | 238 | 2.76E-58 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000372.01.T01 | A0A072VD79 | 93.750 | 272 | 15 | 2 | 1 | 271 | 1 | 271 | 0.0 | 511 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180000372.01.T01 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000372.01.T01 | MTR_1g017090 | 93.750 | 272 | 15 | 2 | 1 | 271 | 1 | 271 | 0.0 | 511 |
| MsG0180000372.01.T01 | MTR_4g097600 | 70.769 | 130 | 34 | 2 | 118 | 245 | 112 | 239 | 4.43e-58 | 187 |
| MsG0180000372.01.T01 | MTR_5g014890 | 63.946 | 147 | 44 | 3 | 130 | 272 | 122 | 263 | 1.09e-57 | 186 |
| MsG0180000372.01.T01 | MTR_1g054285 | 71.074 | 121 | 33 | 1 | 125 | 245 | 148 | 266 | 4.78e-56 | 182 |
| MsG0180000372.01.T01 | MTR_7g093430 | 69.672 | 122 | 35 | 1 | 125 | 246 | 154 | 273 | 9.53e-56 | 181 |
| MsG0180000372.01.T01 | MTR_3g103590 | 48.092 | 262 | 112 | 10 | 28 | 271 | 34 | 289 | 2.44e-53 | 176 |
| MsG0180000372.01.T01 | MTR_4g100550 | 61.151 | 139 | 44 | 3 | 130 | 267 | 119 | 248 | 6.62e-52 | 171 |
| MsG0180000372.01.T01 | MTR_2g061030 | 70.690 | 116 | 32 | 1 | 130 | 245 | 199 | 312 | 7.83e-52 | 172 |
| MsG0180000372.01.T01 | MTR_5g013010 | 50.543 | 184 | 79 | 4 | 89 | 271 | 96 | 268 | 1.76e-51 | 171 |
| MsG0180000372.01.T01 | MTR_8g006705 | 68.696 | 115 | 33 | 2 | 130 | 243 | 145 | 257 | 3.80e-49 | 165 |
| MsG0180000372.01.T01 | MTR_4g084750 | 56.452 | 124 | 50 | 1 | 124 | 243 | 58 | 181 | 1.98e-41 | 141 |
| MsG0180000372.01.T01 | MTR_2g038625 | 48.387 | 155 | 76 | 3 | 95 | 249 | 49 | 199 | 4.02e-36 | 128 |
| MsG0180000372.01.T01 | MTR_2g038580 | 48.387 | 155 | 76 | 3 | 95 | 249 | 49 | 199 | 4.02e-36 | 128 |
| MsG0180000372.01.T01 | MTR_4g126900 | 58.407 | 113 | 45 | 2 | 133 | 243 | 90 | 202 | 1.69e-33 | 122 |
| MsG0180000372.01.T01 | MTR_5g013010 | 54.255 | 94 | 41 | 1 | 89 | 182 | 96 | 187 | 4.87e-21 | 88.6 |
| MsG0180000372.01.T01 | MTR_6g007647 | 51.648 | 91 | 44 | 0 | 128 | 218 | 30 | 120 | 1.38e-20 | 88.6 |
| MsG0180000372.01.T01 | MTR_6g007647 | 51.648 | 91 | 44 | 0 | 128 | 218 | 64 | 154 | 1.78e-20 | 89.0 |
| MsG0180000372.01.T01 | MTR_7g010020 | 42.991 | 107 | 54 | 1 | 130 | 229 | 79 | 185 | 8.47e-18 | 81.3 |
| MsG0180000372.01.T01 | MTR_1g061660 | 43.299 | 97 | 55 | 0 | 123 | 219 | 51 | 147 | 9.44e-18 | 80.5 |
| MsG0180000372.01.T01 | MTR_3g080100 | 31.401 | 207 | 92 | 7 | 106 | 273 | 35 | 230 | 3.32e-17 | 79.3 |
| MsG0180000372.01.T01 | MTR_3g080100 | 32.979 | 188 | 79 | 6 | 125 | 273 | 12 | 191 | 4.36e-17 | 78.2 |
| MsG0180000372.01.T01 | MTR_5g039000 | 43.434 | 99 | 54 | 1 | 122 | 218 | 66 | 164 | 1.54e-16 | 77.8 |
| MsG0180000372.01.T01 | MTR_7g103340 | 40.777 | 103 | 61 | 0 | 115 | 217 | 47 | 149 | 2.86e-16 | 76.3 |
| MsG0180000372.01.T01 | MTR_3g086790 | 47.368 | 95 | 43 | 1 | 131 | 218 | 60 | 154 | 4.55e-16 | 77.0 |
| MsG0180000372.01.T01 | MTR_8g089895 | 43.802 | 121 | 57 | 3 | 105 | 218 | 32 | 148 | 8.11e-16 | 76.3 |
| MsG0180000372.01.T01 | MTR_8g468210 | 43.158 | 95 | 52 | 1 | 126 | 218 | 70 | 164 | 1.03e-15 | 75.5 |
| MsG0180000372.01.T01 | MTR_8g469430 | 45.833 | 96 | 45 | 1 | 129 | 217 | 87 | 182 | 1.74e-15 | 75.1 |
| MsG0180000372.01.T01 | MTR_6g011610 | 47.872 | 94 | 42 | 1 | 131 | 217 | 96 | 189 | 1.91e-15 | 74.7 |
| MsG0180000372.01.T01 | MTR_4g107650 | 47.727 | 88 | 46 | 0 | 131 | 218 | 95 | 182 | 2.41e-15 | 75.1 |
| MsG0180000372.01.T01 | MTR_6g011610 | 47.872 | 94 | 42 | 1 | 131 | 217 | 77 | 170 | 3.20e-15 | 73.9 |
| MsG0180000372.01.T01 | MTR_5g038280 | 44.211 | 95 | 46 | 1 | 131 | 218 | 87 | 181 | 1.61e-14 | 72.8 |
| MsG0180000372.01.T01 | MTR_5g019650 | 47.059 | 85 | 45 | 0 | 131 | 215 | 53 | 137 | 1.44e-11 | 63.2 |
| MsG0180000372.01.T01 | MTR_5g019680 | 50.704 | 71 | 35 | 0 | 131 | 201 | 53 | 123 | 5.36e-11 | 61.2 |
| MsG0180000372.01.T01 | MTR_3g092150 | 40.860 | 93 | 48 | 1 | 134 | 219 | 41 | 133 | 9.24e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000372.01.T01 | AT4G37790 | 47.791 | 249 | 115 | 7 | 1 | 245 | 1 | 238 | 2.82e-59 | 190 |
| MsG0180000372.01.T01 | AT5G06710 | 65.672 | 134 | 41 | 2 | 125 | 258 | 184 | 312 | 2.41e-56 | 184 |
| MsG0180000372.01.T01 | AT2G22800 | 46.185 | 249 | 106 | 5 | 1 | 245 | 1 | 225 | 6.46e-53 | 174 |
| MsG0180000372.01.T01 | AT4G16780 | 59.712 | 139 | 46 | 3 | 130 | 267 | 128 | 257 | 4.09e-50 | 167 |
| MsG0180000372.01.T01 | AT3G60390 | 65.854 | 123 | 41 | 1 | 121 | 243 | 152 | 273 | 9.80e-50 | 166 |
| MsG0180000372.01.T01 | AT2G44910 | 67.521 | 117 | 35 | 2 | 130 | 245 | 162 | 276 | 2.92e-48 | 163 |
| MsG0180000372.01.T01 | AT5G47370 | 46.544 | 217 | 91 | 7 | 65 | 270 | 54 | 256 | 6.88e-48 | 161 |
| MsG0180000372.01.T01 | AT4G17460 | 63.559 | 118 | 42 | 1 | 130 | 247 | 134 | 250 | 2.20e-45 | 154 |
| MsG0180000372.01.T01 | AT2G01430 | 54.918 | 122 | 49 | 3 | 126 | 245 | 132 | 249 | 1.42e-37 | 134 |
| MsG0180000372.01.T01 | AT1G70920 | 43.827 | 162 | 76 | 3 | 94 | 253 | 4 | 152 | 5.91e-34 | 121 |
| MsG0180000372.01.T01 | AT1G70920 | 43.827 | 162 | 76 | 3 | 94 | 253 | 34 | 182 | 6.91e-34 | 122 |
| MsG0180000372.01.T01 | AT5G06710 | 74.138 | 58 | 15 | 0 | 125 | 182 | 184 | 241 | 1.02e-21 | 92.0 |
| MsG0180000372.01.T01 | AT2G01430 | 64.407 | 59 | 19 | 1 | 126 | 182 | 132 | 190 | 3.77e-19 | 84.0 |
| MsG0180000372.01.T01 | AT3G01470 | 45.263 | 95 | 45 | 1 | 129 | 216 | 66 | 160 | 5.52e-17 | 79.0 |
| MsG0180000372.01.T01 | AT1G69780 | 45.455 | 88 | 48 | 0 | 131 | 218 | 85 | 172 | 4.83e-16 | 76.6 |
| MsG0180000372.01.T01 | AT1G26960 | 39.024 | 123 | 69 | 3 | 126 | 246 | 64 | 182 | 7.86e-16 | 75.5 |
| MsG0180000372.01.T01 | AT5G15150 | 37.086 | 151 | 82 | 3 | 122 | 261 | 102 | 250 | 1.42e-15 | 75.9 |
| MsG0180000372.01.T01 | AT1G27045 | 51.136 | 88 | 43 | 0 | 131 | 218 | 68 | 155 | 2.97e-15 | 73.6 |
| MsG0180000372.01.T01 | AT1G27045 | 59.091 | 66 | 27 | 0 | 131 | 196 | 17 | 82 | 3.55e-15 | 72.0 |
| MsG0180000372.01.T01 | AT1G27045 | 59.091 | 66 | 27 | 0 | 131 | 196 | 25 | 90 | 3.80e-15 | 72.4 |
| MsG0180000372.01.T01 | AT1G27045 | 59.091 | 66 | 27 | 0 | 131 | 196 | 25 | 90 | 3.80e-15 | 72.4 |
| MsG0180000372.01.T01 | AT1G27045 | 51.136 | 88 | 43 | 0 | 131 | 218 | 68 | 155 | 4.12e-15 | 73.6 |
| MsG0180000372.01.T01 | AT2G22430 | 44.444 | 99 | 51 | 1 | 127 | 221 | 58 | 156 | 5.09e-15 | 73.9 |
| MsG0180000372.01.T01 | AT4G40060 | 42.857 | 105 | 56 | 1 | 121 | 221 | 49 | 153 | 8.94e-15 | 73.2 |
| MsG0180000372.01.T01 | AT5G65310 | 43.434 | 99 | 49 | 1 | 131 | 222 | 72 | 170 | 1.33e-14 | 72.8 |
| MsG0180000372.01.T01 | AT2G36610 | 42.157 | 102 | 51 | 1 | 126 | 219 | 66 | 167 | 1.37e-14 | 70.9 |
| MsG0180000372.01.T01 | AT5G65310 | 43.434 | 99 | 49 | 1 | 131 | 222 | 54 | 152 | 1.64e-14 | 72.4 |
| MsG0180000372.01.T01 | AT3G01220 | 40.741 | 108 | 53 | 2 | 122 | 218 | 74 | 181 | 1.32e-13 | 69.7 |
| MsG0180000372.01.T01 | AT5G03790 | 39.326 | 89 | 54 | 0 | 131 | 219 | 77 | 165 | 7.04e-13 | 67.0 |
| MsG0180000372.01.T01 | AT5G03790 | 35.345 | 116 | 69 | 2 | 131 | 240 | 77 | 192 | 6.70e-12 | 63.5 |
| MsG0180000372.01.T01 | AT2G46680 | 40.000 | 85 | 51 | 0 | 134 | 218 | 35 | 119 | 8.19e-12 | 64.3 |
| MsG0180000372.01.T01 | AT2G46680 | 40.000 | 85 | 51 | 0 | 134 | 218 | 35 | 119 | 8.86e-12 | 64.3 |
| MsG0180000372.01.T01 | AT2G18550 | 41.379 | 87 | 51 | 0 | 131 | 217 | 61 | 147 | 1.56e-11 | 62.8 |
| MsG0180000372.01.T01 | AT4G36740 | 40.230 | 87 | 52 | 0 | 131 | 217 | 56 | 142 | 4.71e-11 | 61.6 |
| MsG0180000372.01.T01 | AT4G36740 | 40.230 | 87 | 52 | 0 | 131 | 217 | 55 | 141 | 4.97e-11 | 61.6 |
Find 53 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCAACAACATTGCTTAT+TGG | 0.141245 | 1:+5068314 | MsG0180000372.01.T01:CDS |
| TGCTGGAATCTTCATATAAA+AGG | 0.190194 | 1:-5068228 | None:intergenic |
| TCTTCACTCTCTTCCTTTGA+TGG | 0.194879 | 1:-5066382 | None:intergenic |
| ACATTTCCTATCCTTGTAAT+TGG | 0.204501 | 1:-5066565 | None:intergenic |
| GTGAGCTTAAGTTTCTTCCT+TGG | 0.312892 | 1:-5066604 | None:intergenic |
| AAAACAACAATCAGAAGTTT+TGG | 0.327778 | 1:+5066627 | MsG0180000372.01.T01:CDS |
| TGAGCTTAAGTTTCTTCCTT+GGG | 0.356691 | 1:-5066603 | None:intergenic |
| CTTCAACTTGATCTTGATCT+AGG | 0.366943 | 1:+5066250 | MsG0180000372.01.T01:CDS |
| GGAGAGTGGTGAGGAATTTG+AGG | 0.383101 | 1:+5066525 | MsG0180000372.01.T01:CDS |
| GAATCCATCAAAATGCATTA+AGG | 0.386220 | 1:+5066336 | MsG0180000372.01.T01:CDS |
| GCTTATCCAATGCTTACATT+AGG | 0.396378 | 1:+5066358 | MsG0180000372.01.T01:CDS |
| ACCACTCTCCTTCTTGATGC+TGG | 0.408547 | 1:-5066512 | None:intergenic |
| TAGAGGTGTGGTTTCAAAAT+CGG | 0.417824 | 1:+5067468 | MsG0180000372.01.T01:CDS |
| AGCAAATAAGCTGAATCTGC+AGG | 0.462898 | 1:+5067436 | MsG0180000372.01.T01:CDS |
| AGTGGTGAGGAATTTGAGGT+AGG | 0.465213 | 1:+5066529 | MsG0180000372.01.T01:CDS |
| ATAGGAAATGTTGTTAAAGA+TGG | 0.478317 | 1:+5066577 | MsG0180000372.01.T01:CDS |
| CCTTCGTGTGAGACAATTTG+TGG | 0.483619 | 1:+5068269 | MsG0180000372.01.T01:CDS |
| AAGCAATGTTGTTGAGGGTA+AGG | 0.485816 | 1:-5068309 | None:intergenic |
| GTGGTGAGGAATTTGAGGTA+GGG | 0.490219 | 1:+5066530 | MsG0180000372.01.T01:CDS |
| GCTGGAATCTTCATATAAAA+GGG | 0.492378 | 1:-5068227 | None:intergenic |
| GATGGTCCTAATGTAAGCAT+TGG | 0.505729 | 1:-5066364 | None:intergenic |
| GCCAATAAGCAATGTTGTTG+AGG | 0.507378 | 1:-5068315 | None:intergenic |
| GATCATCAAAATGATCATGA+AGG | 0.507703 | 1:-5066279 | None:intergenic |
| GGTTTCAAAATCGGAGAGCC+AGG | 0.511878 | 1:+5067477 | MsG0180000372.01.T01:CDS |
| GGAGAACAAGAAGTTGCAAA+AGG | 0.515455 | 1:+5068163 | MsG0180000372.01.T01:CDS |
| CCAATAAGCAATGTTGTTGA+GGG | 0.519543 | 1:-5068314 | None:intergenic |
| CAGATGGTCAGTGTTGCTGC+TGG | 0.519857 | 1:-5068245 | None:intergenic |
| ACTCTCCTTCTTGATGCTGG+TGG | 0.522994 | 1:-5066509 | None:intergenic |
| AGAGCATTCTACTCTTAATC+CGG | 0.524461 | 1:+5066663 | MsG0180000372.01.T01:CDS |
| AGAAAGCAAGAAGAAAAGAG+TGG | 0.525098 | 1:+5066312 | MsG0180000372.01.T01:CDS |
| AAGGTGCCAATTACAAGGAT+AGG | 0.527337 | 1:+5066559 | MsG0180000372.01.T01:CDS |
| CAGAACAAAGCTGAAACAAA+CGG | 0.533275 | 1:+5068094 | MsG0180000372.01.T01:intron |
| AAATTCCACCAGCATCAAGA+AGG | 0.544578 | 1:+5066504 | MsG0180000372.01.T01:CDS |
| TAGAAAAGGTGCCAATTACA+AGG | 0.547476 | 1:+5066554 | MsG0180000372.01.T01:CDS |
| ATTTGAGGTAGGGATAGAAA+AGG | 0.548356 | 1:+5066540 | MsG0180000372.01.T01:CDS |
| ATCAAGTTGAAGCCATGTGT+TGG | 0.549755 | 1:-5066239 | None:intergenic |
| AAGTTGAAGCCATGTGTTGG+AGG | 0.556547 | 1:-5066236 | None:intergenic |
| ATCATCAAAATGATCATGAA+GGG | 0.559045 | 1:-5066278 | None:intergenic |
| CACAAATTGTCTCACACGAA+GGG | 0.559451 | 1:-5068268 | None:intergenic |
| GCTTACATTAGGACCATCAA+AGG | 0.583436 | 1:+5066369 | MsG0180000372.01.T01:CDS |
| TGTCTCACACGAAGGGCAGA+TGG | 0.584520 | 1:-5068261 | None:intergenic |
| ATTTGTGGTGGCAACAACAA+TGG | 0.596806 | 1:+5068284 | MsG0180000372.01.T01:CDS |
| TTGATGATACCTCCAACACA+TGG | 0.609555 | 1:+5066227 | MsG0180000372.01.T01:CDS |
| ACAACATTCAACATCAAAGA+CGG | 0.613762 | 1:+5066420 | MsG0180000372.01.T01:CDS |
| TCTGCAGGCTAGACAAGTAG+AGG | 0.619659 | 1:+5067451 | MsG0180000372.01.T01:CDS |
| CTTGCAGAAGTAAATTGAGT+CGG | 0.624395 | 1:-5066463 | None:intergenic |
| CCACAAATTGTCTCACACGA+AGG | 0.633537 | 1:-5068269 | None:intergenic |
| ACCAGCATCAAGAAGGAGAG+TGG | 0.638240 | 1:+5066511 | MsG0180000372.01.T01:CDS |
| GTGTTGCGAATCTCTAACAG+AGG | 0.648660 | 1:+5068142 | MsG0180000372.01.T01:CDS |
| TTGTTAAAGATGGTAGCCCA+AGG | 0.653887 | 1:+5066587 | MsG0180000372.01.T01:CDS |
| CATCAAGAAGGAGAGTGGTG+AGG | 0.670590 | 1:+5066516 | MsG0180000372.01.T01:CDS |
| AGGCTAGACAAGTAGAGGTG+TGG | 0.674713 | 1:+5067456 | MsG0180000372.01.T01:CDS |
| TCGTGTGAGACAATTTGTGG+TGG | 0.683367 | 1:+5068272 | MsG0180000372.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAAATTAAATTCTA+AGG | - | Chr1:5067295-5067314 | None:intergenic | 10.0% |
| !! | AAACAAAGAAGTAAAATATA+TGG | - | Chr1:5067704-5067723 | None:intergenic | 15.0% |
| !! | AAGTTTATAAAAATTGTTTC+AGG | - | Chr1:5067200-5067219 | None:intergenic | 15.0% |
| !!! | ACAATTTTTATAAACTTGTA+CGG | + | Chr1:5067203-5067222 | MsG0180000372.01.T01:intron | 15.0% |
| !!! | ATTTTATTAGAATTAGATCT+TGG | + | Chr1:5066991-5067010 | MsG0180000372.01.T01:intron | 15.0% |
| !! | AAATTTGTAATACATTGGAT+TGG | - | Chr1:5067338-5067357 | None:intergenic | 20.0% |
| !! | AGTTTCAAAATTTATTCTCT+TGG | + | Chr1:5067072-5067091 | MsG0180000372.01.T01:intron | 20.0% |
| !! | ATGAGAATATTGATGAATTA+AGG | - | Chr1:5066691-5066710 | None:intergenic | 20.0% |
| !! | CTACAAAATTTGTAATACAT+TGG | - | Chr1:5067343-5067362 | None:intergenic | 20.0% |
| !! | TTTCAGGAAATTATTTATTC+TGG | - | Chr1:5067184-5067203 | None:intergenic | 20.0% |
| !!! | ACTTCTTTGTTTTTTTTTAC+TGG | + | Chr1:5067712-5067731 | MsG0180000372.01.T01:intron | 20.0% |
| !!! | CAAACATTTCTAAAAAAATG+AGG | - | Chr1:5067252-5067271 | None:intergenic | 20.0% |
| !!! | CATTTTTTTAGAAATGTTTG+TGG | + | Chr1:5067252-5067271 | MsG0180000372.01.T01:intron | 20.0% |
| !!! | TCATTTCCATAAAAACTTTT+TGG | + | Chr1:5068349-5068368 | MsG0180000372.01.T01:CDS | 20.0% |
| ! | ATACAATTTCACAAAATCTG+AGG | - | Chr1:5068039-5068058 | None:intergenic | 25.0% |
| ! | ATAGGAAATGTTGTTAAAGA+TGG | + | Chr1:5066577-5066596 | MsG0180000372.01.T01:CDS | 25.0% |
| ! | ATATATATTGTTAGAGCGAA+AGG | + | Chr1:5067855-5067874 | MsG0180000372.01.T01:intron | 25.0% |
| ! | ATATTGATGAATTAAGGTAC+CGG | - | Chr1:5066685-5066704 | None:intergenic | 25.0% |
| ! | ATCATCAAAATGATCATGAA+GGG | - | Chr1:5066281-5066300 | None:intergenic | 25.0% |
| ! | CATCAATATTCTCATATCTT+TGG | + | Chr1:5066696-5066715 | MsG0180000372.01.T01:intron | 25.0% |
| !! | AAAACAACAATCAGAAGTTT+TGG | + | Chr1:5066627-5066646 | MsG0180000372.01.T01:CDS | 25.0% |
| !! | AATATCAAAACAAAAGTACG+TGG | - | Chr1:5066751-5066770 | None:intergenic | 25.0% |
| !!! | ATGATCATTTTGATGATCAT+GGG | + | Chr1:5066284-5066303 | MsG0180000372.01.T01:CDS | 25.0% |
| ACAACATTCAACATCAAAGA+CGG | + | Chr1:5066420-5066439 | MsG0180000372.01.T01:CDS | 30.0% | |
| ACACAAAATGTTAACAGCTA+GGG | + | Chr1:5067944-5067963 | MsG0180000372.01.T01:intron | 30.0% | |
| ACATTTCCTATCCTTGTAAT+TGG | - | Chr1:5066568-5066587 | None:intergenic | 30.0% | |
| CTCCTTCTTAAACTCTTTAA+AGG | + | Chr1:5067980-5067999 | MsG0180000372.01.T01:intron | 30.0% | |
| GAATCCATCAAAATGCATTA+AGG | + | Chr1:5066336-5066355 | MsG0180000372.01.T01:CDS | 30.0% | |
| GATACTTATCTTAAAACGCA+CGG | - | Chr1:5067515-5067534 | None:intergenic | 30.0% | |
| GATCATCAAAATGATCATGA+AGG | - | Chr1:5066282-5066301 | None:intergenic | 30.0% | |
| GCTGGAATCTTCATATAAAA+GGG | - | Chr1:5068230-5068249 | None:intergenic | 30.0% | |
| GGTAAAATCTTGATATTCCT+AGG | + | Chr1:5067133-5067152 | MsG0180000372.01.T01:intron | 30.0% | |
| TATGAAGCAAACTCAATCTA+AGG | - | Chr1:5067053-5067072 | None:intergenic | 30.0% | |
| TGCTGGAATCTTCATATAAA+AGG | - | Chr1:5068231-5068250 | None:intergenic | 30.0% | |
| TTAGAATTAGATCTTGGTCT+TGG | + | Chr1:5066997-5067016 | MsG0180000372.01.T01:intron | 30.0% | |
| TTCACAAAATCTGAGGAATA+AGG | - | Chr1:5068032-5068051 | None:intergenic | 30.0% | |
| ! | AAAACAAAAGTACGTGGTAT+AGG | - | Chr1:5066745-5066764 | None:intergenic | 30.0% |
| ! | CAAGATTTTACCAAACACTT+TGG | - | Chr1:5067125-5067144 | None:intergenic | 30.0% |
| ! | CTTTAAAGAGTTTAAGAAGG+AGG | - | Chr1:5067982-5068001 | None:intergenic | 30.0% |
| ! | GACCTTTAAAGAGTTTAAGA+AGG | - | Chr1:5067985-5068004 | None:intergenic | 30.0% |
| ! | TAAGCCTTAATGCATTTTGA+TGG | - | Chr1:5066343-5066362 | None:intergenic | 30.0% |
| ! | TATTATTCCACCAAAGTGTT+TGG | + | Chr1:5067112-5067131 | MsG0180000372.01.T01:intron | 30.0% |
| ! | TCTCTTGGATTACATTTTCT+GGG | + | Chr1:5067087-5067106 | MsG0180000372.01.T01:intron | 30.0% |
| ! | TTCTCTTGGATTACATTTTC+TGG | + | Chr1:5067086-5067105 | MsG0180000372.01.T01:intron | 30.0% |
| !! | CATGATCATTTTGATGATCA+TGG | + | Chr1:5066283-5066302 | MsG0180000372.01.T01:CDS | 30.0% |
| AAGGTAAAGTATGCGATCAA+AGG | - | Chr1:5068013-5068032 | None:intergenic | 35.0% | |
| AGAAAGCAAGAAGAAAAGAG+TGG | + | Chr1:5066312-5066331 | MsG0180000372.01.T01:CDS | 35.0% | |
| AGAGTTTAAGAAGGAGGTTT+AGG | - | Chr1:5067976-5067995 | None:intergenic | 35.0% | |
| AGGTAAAGTATGCGATCAAA+GGG | - | Chr1:5068012-5068031 | None:intergenic | 35.0% | |
| CACACAAAATGTTAACAGCT+AGG | + | Chr1:5067943-5067962 | MsG0180000372.01.T01:intron | 35.0% | |
| CAGAACAAAGCTGAAACAAA+CGG | + | Chr1:5068094-5068113 | MsG0180000372.01.T01:intron | 35.0% | |
| CCAATAAGCAATGTTGTTGA+GGG | - | Chr1:5068317-5068336 | None:intergenic | 35.0% | |
| CTTCAACTTGATCTTGATCT+AGG | + | Chr1:5066250-5066269 | MsG0180000372.01.T01:CDS | 35.0% | |
| CTTGATATTCCTAGGAAAGT+TGG | + | Chr1:5067141-5067160 | MsG0180000372.01.T01:intron | 35.0% | |
| CTTGCAGAAGTAAATTGAGT+CGG | - | Chr1:5066466-5066485 | None:intergenic | 35.0% | |
| GAGTTTAAGAAGGAGGTTTA+GGG | - | Chr1:5067975-5067994 | None:intergenic | 35.0% | |
| GCTTATCCAATGCTTACATT+AGG | + | Chr1:5066358-5066377 | MsG0180000372.01.T01:CDS | 35.0% | |
| TGAGCTTAAGTTTCTTCCTT+GGG | - | Chr1:5066606-5066625 | None:intergenic | 35.0% | |
| TGCATCATGACAATTGCTAA+TGG | - | Chr1:5067585-5067604 | None:intergenic | 35.0% | |
| ! | AGAGCATTCTACTCTTAATC+CGG | + | Chr1:5066663-5066682 | MsG0180000372.01.T01:CDS | 35.0% |
| ! | ATATTCCTAGGAAAGTTGGT+AGG | + | Chr1:5067145-5067164 | MsG0180000372.01.T01:intron | 35.0% |
| ! | ATTTGAGGTAGGGATAGAAA+AGG | + | Chr1:5066540-5066559 | MsG0180000372.01.T01:CDS | 35.0% |
| ! | CACACACAGTATTTTTCTCA+TGG | + | Chr1:5066893-5066912 | MsG0180000372.01.T01:intron | 35.0% |
| ! | GATTTTACCAAACACTTTGG+TGG | - | Chr1:5067122-5067141 | None:intergenic | 35.0% |
| ! | TAGAGGTGTGGTTTCAAAAT+CGG | + | Chr1:5067468-5067487 | MsG0180000372.01.T01:CDS | 35.0% |
| ! | TCTAAGGTGTGTTTGTTTCA+AGG | - | Chr1:5067279-5067298 | None:intergenic | 35.0% |
| !! | ACAACAATCAGAAGTTTTGG+AGG | + | Chr1:5066630-5066649 | MsG0180000372.01.T01:CDS | 35.0% |
| !! | TAGAAAAGGTGCCAATTACA+AGG | + | Chr1:5066554-5066573 | MsG0180000372.01.T01:CDS | 35.0% |
| AAATTCCACCAGCATCAAGA+AGG | + | Chr1:5066504-5066523 | MsG0180000372.01.T01:CDS | 40.0% | |
| AAGCAATGTTGTTGAGGGTA+AGG | - | Chr1:5068312-5068331 | None:intergenic | 40.0% | |
| AGCAAATAAGCTGAATCTGC+AGG | + | Chr1:5067436-5067455 | MsG0180000372.01.T01:CDS | 40.0% | |
| AGGAGAAAACTTAGATGGCA+CGG | + | Chr1:5067875-5067894 | MsG0180000372.01.T01:intron | 40.0% | |
| ATTTGTGGTGGCAACAACAA+TGG | + | Chr1:5068284-5068303 | MsG0180000372.01.T01:CDS | 40.0% | |
| CACAAATTGTCTCACACGAA+GGG | - | Chr1:5068271-5068290 | None:intergenic | 40.0% | |
| CCCTCAACAACATTGCTTAT+TGG | + | Chr1:5068314-5068333 | MsG0180000372.01.T01:CDS | 40.0% | |
| GATGGTCCTAATGTAAGCAT+TGG | - | Chr1:5066367-5066386 | None:intergenic | 40.0% | |
| GCCAATAAGCAATGTTGTTG+AGG | - | Chr1:5068318-5068337 | None:intergenic | 40.0% | |
| GCGAAAGGAGAAAACTTAGA+TGG | + | Chr1:5067870-5067889 | MsG0180000372.01.T01:intron | 40.0% | |
| GCTTACATTAGGACCATCAA+AGG | + | Chr1:5066369-5066388 | MsG0180000372.01.T01:CDS | 40.0% | |
| GGAGAACAAGAAGTTGCAAA+AGG | + | Chr1:5068163-5068182 | MsG0180000372.01.T01:CDS | 40.0% | |
| GTGAGCTTAAGTTTCTTCCT+TGG | - | Chr1:5066607-5066626 | None:intergenic | 40.0% | |
| TATCCTCTACATGCGCAATA+TGG | - | Chr1:5067912-5067931 | None:intergenic | 40.0% | |
| TCTTCACTCTCTTCCTTTGA+TGG | - | Chr1:5066385-5066404 | None:intergenic | 40.0% | |
| TTGTTAAAGATGGTAGCCCA+AGG | + | Chr1:5066587-5066606 | MsG0180000372.01.T01:CDS | 40.0% | |
| ! | AAGGTGCCAATTACAAGGAT+AGG | + | Chr1:5066559-5066578 | MsG0180000372.01.T01:CDS | 40.0% |
| ! | TGGTCTTGGTTGATTGTGTT+TGG | + | Chr1:5067011-5067030 | MsG0180000372.01.T01:intron | 40.0% |
| ! | TTGATGATACCTCCAACACA+TGG | + | Chr1:5066227-5066246 | MsG0180000372.01.T01:CDS | 40.0% |
| !! | ATCAAGTTGAAGCCATGTGT+TGG | - | Chr1:5066242-5066261 | None:intergenic | 40.0% |
| AAGTTGAAGCCATGTGTTGG+AGG | - | Chr1:5066239-5066258 | None:intergenic | 45.0% | |
| ACACACCTACCAACTTTCCT+AGG | - | Chr1:5067153-5067172 | None:intergenic | 45.0% | |
| CCACAAATTGTCTCACACGA+AGG | - | Chr1:5068272-5068291 | None:intergenic | 45.0% | |
| CCTTCGTGTGAGACAATTTG+TGG | + | Chr1:5068269-5068288 | MsG0180000372.01.T01:CDS | 45.0% | |
| GGAGAAAACTTAGATGGCAC+GGG | + | Chr1:5067876-5067895 | MsG0180000372.01.T01:intron | 45.0% | |
| GTGTTGCGAATCTCTAACAG+AGG | + | Chr1:5068142-5068161 | MsG0180000372.01.T01:CDS | 45.0% | |
| TCGTGTGAGACAATTTGTGG+TGG | + | Chr1:5068272-5068291 | MsG0180000372.01.T01:CDS | 45.0% | |
| TCTCCATATTGCGCATGTAG+AGG | + | Chr1:5067906-5067925 | MsG0180000372.01.T01:intron | 45.0% | |
| ! | AGTGGTGAGGAATTTGAGGT+AGG | + | Chr1:5066529-5066548 | MsG0180000372.01.T01:CDS | 45.0% |
| ! | GTGGTGAGGAATTTGAGGTA+GGG | + | Chr1:5066530-5066549 | MsG0180000372.01.T01:CDS | 45.0% |
| ACCACTCTCCTTCTTGATGC+TGG | - | Chr1:5066515-5066534 | None:intergenic | 50.0% | |
| ACCAGCATCAAGAAGGAGAG+TGG | + | Chr1:5066511-5066530 | MsG0180000372.01.T01:CDS | 50.0% | |
| ACTCTCCTTCTTGATGCTGG+TGG | - | Chr1:5066512-5066531 | None:intergenic | 50.0% | |
| AGGCTAGACAAGTAGAGGTG+TGG | + | Chr1:5067456-5067475 | MsG0180000372.01.T01:CDS | 50.0% | |
| CATCAAGAAGGAGAGTGGTG+AGG | + | Chr1:5066516-5066535 | MsG0180000372.01.T01:CDS | 50.0% | |
| GCACGGAGCAGTAAATTACC+TGG | - | Chr1:5067498-5067517 | None:intergenic | 50.0% | |
| GGAGAGTGGTGAGGAATTTG+AGG | + | Chr1:5066525-5066544 | MsG0180000372.01.T01:CDS | 50.0% | |
| GGTTTCAAAATCGGAGAGCC+AGG | + | Chr1:5067477-5067496 | MsG0180000372.01.T01:CDS | 50.0% | |
| TCTGCAGGCTAGACAAGTAG+AGG | + | Chr1:5067451-5067470 | MsG0180000372.01.T01:CDS | 50.0% | |
| TGTCTCACACGAAGGGCAGA+TGG | - | Chr1:5068264-5068283 | None:intergenic | 55.0% | |
| ! | CAGATGGTCAGTGTTGCTGC+TGG | - | Chr1:5068248-5068267 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 5066220 | 5068376 | 5066220 | ID=MsG0180000372.01;Name=MsG0180000372.01 |
| Chr1 | mRNA | 5066220 | 5068376 | 5066220 | ID=MsG0180000372.01.T01;Parent=MsG0180000372.01;Name=MsG0180000372.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|274 |
| Chr1 | exon | 5066220 | 5066684 | 5066220 | ID=MsG0180000372.01.T01:exon:5205;Parent=MsG0180000372.01.T01 |
| Chr1 | exon | 5067419 | 5067498 | 5067419 | ID=MsG0180000372.01.T01:exon:5204;Parent=MsG0180000372.01.T01 |
| Chr1 | exon | 5068097 | 5068376 | 5068097 | ID=MsG0180000372.01.T01:exon:5203;Parent=MsG0180000372.01.T01 |
| Chr1 | CDS | 5066220 | 5066684 | 5066220 | ID=MsG0180000372.01.T01:cds;Parent=MsG0180000372.01.T01 |
| Chr1 | CDS | 5067419 | 5067498 | 5067419 | ID=MsG0180000372.01.T01:cds;Parent=MsG0180000372.01.T01 |
| Chr1 | CDS | 5068097 | 5068376 | 5068097 | ID=MsG0180000372.01.T01:cds;Parent=MsG0180000372.01.T01 |
| Gene Sequence |
| Protein sequence |
