Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001010.01.T01 | XP_013466407.1 | 91.279 | 172 | 15 | 0 | 1 | 172 | 1 | 172 | 6.17E-100 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001010.01.T01 | O23310 | 52.381 | 105 | 50 | 0 | 50 | 154 | 19 | 123 | 3.87E-34 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001010.01.T01 | A0A072VGA7 | 91.279 | 172 | 15 | 0 | 1 | 172 | 1 | 172 | 2.95e-100 | 295 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180001010.01.T01 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001010.01.T01 | MTR_1g029070 | 91.279 | 172 | 15 | 0 | 1 | 172 | 1 | 172 | 7.47e-104 | 295 |
| MsG0180001010.01.T01 | MTR_1g072790 | 50.000 | 120 | 52 | 2 | 57 | 172 | 34 | 149 | 9.22e-36 | 123 |
| MsG0180001010.01.T01 | MTR_1g039040 | 57.303 | 89 | 38 | 0 | 57 | 145 | 11 | 99 | 2.12e-34 | 120 |
| MsG0180001010.01.T01 | MTR_7g061270 | 47.788 | 113 | 48 | 1 | 57 | 169 | 31 | 132 | 7.56e-34 | 117 |
| MsG0180001010.01.T01 | MTR_7g100650 | 47.788 | 113 | 48 | 1 | 57 | 169 | 31 | 132 | 8.27e-34 | 117 |
| MsG0180001010.01.T01 | MTR_8g091720 | 46.721 | 122 | 59 | 1 | 32 | 153 | 14 | 129 | 1.15e-33 | 118 |
| MsG0180001010.01.T01 | MTR_2g026710 | 56.044 | 91 | 40 | 0 | 57 | 147 | 22 | 112 | 9.68e-33 | 115 |
| MsG0180001010.01.T01 | MTR_5g095740 | 46.094 | 128 | 58 | 2 | 39 | 159 | 3 | 126 | 1.92e-32 | 114 |
| MsG0180001010.01.T01 | MTR_3g058980 | 56.180 | 89 | 39 | 0 | 57 | 145 | 32 | 120 | 6.29e-32 | 113 |
| MsG0180001010.01.T01 | MTR_4g133952 | 40.441 | 136 | 80 | 1 | 9 | 144 | 16 | 150 | 3.53e-31 | 113 |
| MsG0180001010.01.T01 | MTR_4g133938 | 54.348 | 92 | 42 | 0 | 53 | 144 | 20 | 111 | 9.09e-31 | 108 |
| MsG0180001010.01.T01 | MTR_1g088860 | 44.954 | 109 | 60 | 0 | 37 | 145 | 21 | 129 | 1.87e-30 | 110 |
| MsG0180001010.01.T01 | MTR_8g093920 | 53.933 | 89 | 41 | 0 | 57 | 145 | 45 | 133 | 5.56e-30 | 109 |
| MsG0180001010.01.T01 | MTR_4g119500 | 49.474 | 95 | 48 | 0 | 57 | 151 | 27 | 121 | 9.63e-30 | 106 |
| MsG0180001010.01.T01 | MTR_0392s0020 | 50.000 | 88 | 44 | 0 | 57 | 144 | 23 | 110 | 4.71e-28 | 102 |
| MsG0180001010.01.T01 | MTR_1g028480 | 54.878 | 82 | 37 | 0 | 87 | 168 | 24 | 105 | 2.54e-26 | 97.1 |
| MsG0180001010.01.T01 | MTR_1g083070 | 42.529 | 87 | 50 | 0 | 57 | 143 | 9 | 95 | 2.85e-22 | 87.0 |
| MsG0180001010.01.T01 | MTR_1g029100 | 45.000 | 80 | 44 | 0 | 53 | 132 | 3 | 82 | 3.39e-22 | 85.5 |
| MsG0180001010.01.T01 | MTR_5g095900 | 33.721 | 86 | 57 | 0 | 56 | 141 | 20 | 105 | 4.16e-14 | 67.0 |
| MsG0180001010.01.T01 | MTR_2g056000 | 26.126 | 111 | 82 | 0 | 37 | 147 | 26 | 136 | 8.28e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001010.01.T01 | AT4G14540 | 52.381 | 105 | 50 | 0 | 50 | 154 | 19 | 123 | 3.95e-35 | 120 |
| MsG0180001010.01.T01 | AT2G38880 | 50.893 | 112 | 51 | 2 | 57 | 168 | 26 | 133 | 7.15e-34 | 117 |
| MsG0180001010.01.T01 | AT2G38880 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 1.56e-33 | 116 |
| MsG0180001010.01.T01 | AT2G38880 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 1.60e-33 | 116 |
| MsG0180001010.01.T01 | AT2G38880 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 1.60e-33 | 116 |
| MsG0180001010.01.T01 | AT2G38880 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 1.60e-33 | 116 |
| MsG0180001010.01.T01 | AT3G53340 | 42.029 | 138 | 57 | 2 | 30 | 167 | 19 | 133 | 1.93e-33 | 117 |
| MsG0180001010.01.T01 | AT3G53340 | 42.029 | 138 | 57 | 2 | 30 | 167 | 19 | 133 | 1.93e-33 | 117 |
| MsG0180001010.01.T01 | AT2G37060 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 2.40e-33 | 116 |
| MsG0180001010.01.T01 | AT2G37060 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 2.40e-33 | 116 |
| MsG0180001010.01.T01 | AT2G37060 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 2.40e-33 | 116 |
| MsG0180001010.01.T01 | AT5G47640 | 55.435 | 92 | 41 | 0 | 57 | 148 | 32 | 123 | 5.56e-33 | 116 |
| MsG0180001010.01.T01 | AT5G47670 | 52.041 | 98 | 46 | 1 | 57 | 154 | 34 | 130 | 4.88e-32 | 114 |
| MsG0180001010.01.T01 | AT1G21970 | 41.176 | 153 | 77 | 3 | 1 | 143 | 1 | 150 | 7.23e-32 | 114 |
| MsG0180001010.01.T01 | AT5G47670 | 52.041 | 98 | 46 | 1 | 57 | 154 | 63 | 159 | 1.02e-31 | 114 |
| MsG0180001010.01.T01 | AT5G47670 | 52.041 | 98 | 46 | 1 | 57 | 154 | 63 | 159 | 1.02e-31 | 114 |
| MsG0180001010.01.T01 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 4.15e-31 | 109 |
| MsG0180001010.01.T01 | AT3G53340 | 45.045 | 111 | 49 | 1 | 30 | 140 | 19 | 117 | 6.26e-31 | 108 |
| MsG0180001010.01.T01 | AT2G13570 | 55.056 | 89 | 40 | 0 | 57 | 145 | 41 | 129 | 8.28e-31 | 111 |
| MsG0180001010.01.T01 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 9.13e-31 | 109 |
| MsG0180001010.01.T01 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 9.13e-31 | 109 |
| MsG0180001010.01.T01 | AT3G53340 | 43.966 | 116 | 53 | 1 | 30 | 145 | 19 | 122 | 1.14e-30 | 109 |
| MsG0180001010.01.T01 | AT3G53340 | 43.966 | 116 | 53 | 1 | 30 | 145 | 19 | 122 | 1.14e-30 | 109 |
| MsG0180001010.01.T01 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 3.69e-30 | 108 |
| MsG0180001010.01.T01 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 3.69e-30 | 108 |
| MsG0180001010.01.T01 | AT2G38880 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 3.69e-30 | 108 |
| MsG0180001010.01.T01 | AT2G47810 | 51.190 | 84 | 41 | 0 | 57 | 140 | 56 | 139 | 1.17e-27 | 101 |
| MsG0180001010.01.T01 | AT1G09030 | 43.119 | 109 | 60 | 1 | 51 | 159 | 2 | 108 | 1.04e-26 | 99.0 |
| MsG0180001010.01.T01 | AT5G08190 | 27.358 | 106 | 77 | 0 | 46 | 151 | 5 | 110 | 6.60e-12 | 60.8 |
| MsG0180001010.01.T01 | AT5G08190 | 30.952 | 84 | 58 | 0 | 46 | 129 | 5 | 88 | 1.16e-11 | 60.1 |
Find 46 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTAATTTCATATCAATAT+TGG | 0.244898 | 1:-14574603 | None:intergenic |
| GCATGATTCTTGTCAAATTT+CGG | 0.290312 | 1:-14574270 | None:intergenic |
| CCTCATGGTTGCGATAGTTT+TGG | 0.293177 | 1:-14574501 | None:intergenic |
| TTAGTGGTGAAGATATAATA+TGG | 0.337402 | 1:+14574425 | MsG0180001010.01.T01:CDS |
| CATGGGTAGGTTAGGGTTTG+AGG | 0.343933 | 1:+14574450 | MsG0180001010.01.T01:CDS |
| ATATGGGCCATGGGTAGGTT+AGG | 0.348171 | 1:+14574442 | MsG0180001010.01.T01:CDS |
| ATTGTGTGTGTCTGATTTCA+TGG | 0.410886 | 1:+14574348 | MsG0180001010.01.T01:CDS |
| AACATGGATGGGTCGGGTGC+TGG | 0.425049 | 1:+14574559 | MsG0180001010.01.T01:CDS |
| CACAGTTCCTCATTTGTTGT+TGG | 0.457296 | 1:-14574238 | None:intergenic |
| ACACAATTGTGTTGTTGCCT+TGG | 0.463454 | 1:-14574332 | None:intergenic |
| ATGGATGGGTCGGGTGCTGG+TGG | 0.486211 | 1:+14574562 | MsG0180001010.01.T01:CDS |
| GAGAGTCGAAAGATCATTAG+TGG | 0.486411 | 1:+14574409 | MsG0180001010.01.T01:CDS |
| TATGGGCCATGGGTAGGTTA+GGG | 0.487469 | 1:+14574443 | MsG0180001010.01.T01:CDS |
| GATTTAGTCCGTTTGCAAGC+AGG | 0.497822 | 1:+14574142 | MsG0180001010.01.T01:intron |
| TGGATTCAACATGGATGGGT+CGG | 0.500255 | 1:+14574552 | MsG0180001010.01.T01:CDS |
| AGTTCCTCATTTGTTGTTGG+AGG | 0.507953 | 1:-14574235 | None:intergenic |
| GGATTCAACATGGATGGGTC+GGG | 0.516213 | 1:+14574553 | MsG0180001010.01.T01:CDS |
| ATTTAGTCCGTTTGCAAGCA+GGG | 0.519142 | 1:+14574143 | MsG0180001010.01.T01:intron |
| GATTCTTGTCAAATTTCGGA+TGG | 0.519326 | 1:-14574266 | None:intergenic |
| TGAAGATATAATATGGGCCA+TGG | 0.523399 | 1:+14574432 | MsG0180001010.01.T01:CDS |
| ATGGACTCCCTGCTTGCAAA+CGG | 0.525534 | 1:-14574150 | None:intergenic |
| GCTCGTGGATTCAACATGGA+TGG | 0.528087 | 1:+14574547 | MsG0180001010.01.T01:CDS |
| GGTGCTGGTGGCTCGAGCAG+TGG | 0.541755 | 1:+14574574 | MsG0180001010.01.T01:CDS |
| CGTTCAGCACAATCAAGCTC+TGG | 0.543458 | 1:+14572923 | MsG0180001010.01.T01:CDS |
| TAGTGGTGAAGATATAATAT+GGG | 0.544148 | 1:+14574426 | MsG0180001010.01.T01:CDS |
| GGTGGCTCGAGCAGTGGTAA+TGG | 0.549299 | 1:+14574580 | MsG0180001010.01.T01:CDS |
| TGAACGGTTGTTGTTAAATG+AGG | 0.552826 | 1:-14572906 | None:intergenic |
| TCCTAAAGTAGCATGGAGCA+TGG | 0.582752 | 1:+14572878 | None:intergenic |
| AGTGGCACGTCAACTGCTCG+TGG | 0.583180 | 1:+14574532 | MsG0180001010.01.T01:CDS |
| CTCGTGGATTCAACATGGAT+GGG | 0.584715 | 1:+14574548 | MsG0180001010.01.T01:CDS |
| TTTACCTCCAACAACAAATG+AGG | 0.591369 | 1:+14574231 | MsG0180001010.01.T01:CDS |
| AACCATGAGGCTCAATTCAG+TGG | 0.593599 | 1:+14574514 | MsG0180001010.01.T01:CDS |
| ATTCTTGTCAAATTTCGGAT+GGG | 0.595454 | 1:-14574265 | None:intergenic |
| ATGAAAACAATGAATCTCCA+AGG | 0.596844 | 1:+14574173 | MsG0180001010.01.T01:CDS |
| TTGTGTGTGTCTGATTTCAT+GGG | 0.598205 | 1:+14574349 | MsG0180001010.01.T01:CDS |
| ATATAATATGGGCCATGGGT+AGG | 0.601954 | 1:+14574437 | MsG0180001010.01.T01:CDS |
| AACTGCTCGTGGATTCAACA+TGG | 0.604751 | 1:+14574543 | MsG0180001010.01.T01:CDS |
| CTCAAACCCTAACCTACCCA+TGG | 0.607706 | 1:-14574449 | None:intergenic |
| GAAGATATAATATGGGCCAT+GGG | 0.615040 | 1:+14574433 | MsG0180001010.01.T01:CDS |
| GCATTTCTCAACAGCCTCAG+TGG | 0.623536 | 1:-14574380 | None:intergenic |
| CAGAGCTTGATTGTGCTGAA+CGG | 0.629066 | 1:-14572922 | None:intergenic |
| TGCCACTGAATTGAGCCTCA+TGG | 0.650553 | 1:-14574516 | None:intergenic |
| GAACGGTTGTTGTTAAATGA+GGG | 0.692444 | 1:-14572905 | None:intergenic |
| GAAATTTGACAAGAATCATG+CGG | 0.699293 | 1:+14574272 | MsG0180001010.01.T01:CDS |
| CCAAAACTATCGCAACCATG+AGG | 0.711644 | 1:+14574501 | MsG0180001010.01.T01:CDS |
| CATGGGCATCATCACCACTG+AGG | 0.758004 | 1:+14574366 | MsG0180001010.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAATAAAATCAATTAA+GGG | - | Chr1:14573190-14573209 | None:intergenic | 10.0% |
| !!! | ATTATTGTATTTAAAACTAA+TGG | + | Chr1:14573603-14573622 | MsG0180001010.01.T01:intron | 10.0% |
| !!! | TTAATGAAATTTTGATTTAA+GGG | + | Chr1:14573335-14573354 | MsG0180001010.01.T01:intron | 10.0% |
| !!! | TTATTGTATTTAAAACTAAT+GGG | + | Chr1:14573604-14573623 | MsG0180001010.01.T01:intron | 10.0% |
| !!! | TTTAATGAAATTTTGATTTA+AGG | + | Chr1:14573334-14573353 | MsG0180001010.01.T01:intron | 10.0% |
| !! | ATCTAATAAAATCAATTAAG+GGG | - | Chr1:14573189-14573208 | None:intergenic | 15.0% |
| !! | GAATCTAATAAAATCAATTA+AGG | - | Chr1:14573191-14573210 | None:intergenic | 15.0% |
| !!! | TAATGAAATTTTGATTTAAG+GGG | + | Chr1:14573336-14573355 | MsG0180001010.01.T01:intron | 15.0% |
| !!! | TATTATTTTAATATGTCTGA+GGG | + | Chr1:14573441-14573460 | MsG0180001010.01.T01:intron | 15.0% |
| !!! | TTATTATTTTAATATGTCTG+AGG | + | Chr1:14573440-14573459 | MsG0180001010.01.T01:intron | 15.0% |
| !!! | TTTTTCTACTTTTAAATCTA+AGG | - | Chr1:14573933-14573952 | None:intergenic | 15.0% |
| !! | TCTAATAAAATCAATTAAGG+GGG | - | Chr1:14573188-14573207 | None:intergenic | 20.0% |
| !!! | ATCAAAATCAATCTTTTACA+AGG | - | Chr1:14573095-14573114 | None:intergenic | 20.0% |
| !!! | TATTATTTTAGAGATATACG+AGG | - | Chr1:14573012-14573031 | None:intergenic | 20.0% |
| !!! | TTGATTTTATTAGATTCTCA+AGG | + | Chr1:14573194-14573213 | MsG0180001010.01.T01:intron | 20.0% |
| ! | ACTCTGTGTAATAAAAAAGA+AGG | + | Chr1:14574006-14574025 | MsG0180001010.01.T01:intron | 25.0% |
| ! | AGCAAAATTGACGTATTTAA+GGG | - | Chr1:14573743-14573762 | None:intergenic | 25.0% |
| ! | GGGATGACAAAAAAAAAATA+TGG | + | Chr1:14573356-14573375 | MsG0180001010.01.T01:intron | 25.0% |
| ! | TAGAAATAAAGTGAGAGAAA+AGG | + | Chr1:14573694-14573713 | MsG0180001010.01.T01:intron | 25.0% |
| ! | TAGCAAAATTGACGTATTTA+AGG | - | Chr1:14573744-14573763 | None:intergenic | 25.0% |
| ! | TAGTGGTGAAGATATAATAT+GGG | + | Chr1:14574426-14574445 | MsG0180001010.01.T01:CDS | 25.0% |
| ! | TTAGTGGTGAAGATATAATA+TGG | + | Chr1:14574425-14574444 | MsG0180001010.01.T01:CDS | 25.0% |
| ! | TTCATTGTTGATCTATCTAA+TGG | + | Chr1:14573769-14573788 | MsG0180001010.01.T01:intron | 25.0% |
| !! | AATTTCAGCATCAATGTTTT+TGG | - | Chr1:14574200-14574219 | None:intergenic | 25.0% |
| !! | CTAAAAAAGATTTGAGATCT+TGG | + | Chr1:14573497-14573516 | MsG0180001010.01.T01:intron | 25.0% |
| !!! | TTCTACTTTTAAATCTAAGG+TGG | - | Chr1:14573930-14573949 | None:intergenic | 25.0% |
| !!! | TTTTTAGTGTGAATCGAATT+CGG | - | Chr1:14573484-14573503 | None:intergenic | 25.0% |
| AAAAATATCTCAAGATGCCA+AGG | + | Chr1:14574315-14574334 | MsG0180001010.01.T01:CDS | 30.0% | |
| AAATAAAGTGAGAGAAAAGG+TGG | + | Chr1:14573697-14573716 | MsG0180001010.01.T01:intron | 30.0% | |
| AATAAAGTGAGAGAAAAGGT+GGG | + | Chr1:14573698-14573717 | MsG0180001010.01.T01:intron | 30.0% | |
| ATGAAAACAATGAATCTCCA+AGG | + | Chr1:14574173-14574192 | MsG0180001010.01.T01:CDS | 30.0% | |
| ATTCTTGTCAAATTTCGGAT+GGG | - | Chr1:14574268-14574287 | None:intergenic | 30.0% | |
| GAAATTTGACAAGAATCATG+CGG | + | Chr1:14574272-14574291 | MsG0180001010.01.T01:CDS | 30.0% | |
| GCAAAATTGACGTATTTAAG+GGG | - | Chr1:14573742-14573761 | None:intergenic | 30.0% | |
| GCATGATTCTTGTCAAATTT+CGG | - | Chr1:14574273-14574292 | None:intergenic | 30.0% | |
| TGTCAATTATACGTTACGTT+CGG | + | Chr1:14573975-14573994 | MsG0180001010.01.T01:intron | 30.0% | |
| ! | GGAGATTCATTGTTTTCATA+TGG | - | Chr1:14574172-14574191 | None:intergenic | 30.0% |
| ! | GTCTGAGGGTTATAAATTTT+GGG | + | Chr1:14573455-14573474 | MsG0180001010.01.T01:intron | 30.0% |
| ! | TCTGAGGGTTATAAATTTTG+GGG | + | Chr1:14573456-14573475 | MsG0180001010.01.T01:intron | 30.0% |
| ! | TGTCTGAGGGTTATAAATTT+TGG | + | Chr1:14573454-14573473 | MsG0180001010.01.T01:intron | 30.0% |
| !!! | GTGCATCACTTTTTTTTTGA+AGG | + | Chr1:14573260-14573279 | MsG0180001010.01.T01:intron | 30.0% |
| !!! | TTGTTAGCGATTTTTTACAC+TGG | + | Chr1:14573297-14573316 | MsG0180001010.01.T01:intron | 30.0% |
| ATTGTGTGTGTCTGATTTCA+TGG | + | Chr1:14574348-14574367 | MsG0180001010.01.T01:CDS | 35.0% | |
| CGGAAAGAAAGATCTAACTT+GGG | + | Chr1:14573229-14573248 | MsG0180001010.01.T01:intron | 35.0% | |
| CTTAACTACGTGCTTATGTT+TGG | + | Chr1:14574120-14574139 | MsG0180001010.01.T01:intron | 35.0% | |
| GAAGATATAATATGGGCCAT+GGG | + | Chr1:14574433-14574452 | MsG0180001010.01.T01:CDS | 35.0% | |
| GATTCTTGTCAAATTTCGGA+TGG | - | Chr1:14574269-14574288 | None:intergenic | 35.0% | |
| TCGGAAAGAAAGATCTAACT+TGG | + | Chr1:14573228-14573247 | MsG0180001010.01.T01:intron | 35.0% | |
| TGAAGATATAATATGGGCCA+TGG | + | Chr1:14574432-14574451 | MsG0180001010.01.T01:CDS | 35.0% | |
| TTGTGTGTGTCTGATTTCAT+GGG | + | Chr1:14574349-14574368 | MsG0180001010.01.T01:CDS | 35.0% | |
| TTTACCTCCAACAACAAATG+AGG | + | Chr1:14574231-14574250 | MsG0180001010.01.T01:CDS | 35.0% | |
| ! | GAACGGTTGTTGTTAAATGA+GGG | - | Chr1:14572908-14572927 | None:intergenic | 35.0% |
| ! | TCTCAAGGCATTATTTGCTT+CGG | + | Chr1:14573209-14573228 | MsG0180001010.01.T01:intron | 35.0% |
| ! | TGAACGGTTGTTGTTAAATG+AGG | - | Chr1:14572909-14572928 | None:intergenic | 35.0% |
| ! | TTTTGTGTCTGTGTAGATAC+CGG | - | Chr1:14573806-14573825 | None:intergenic | 35.0% |
| !! | TGAGATATTTTTGCGTACGA+TGG | - | Chr1:14574307-14574326 | None:intergenic | 35.0% |
| ACATCATCACTTGACGTTAG+TGG | - | Chr1:14573881-14573900 | None:intergenic | 40.0% | |
| ATATAATATGGGCCATGGGT+AGG | + | Chr1:14574437-14574456 | MsG0180001010.01.T01:CDS | 40.0% | |
| ATTTAGTCCGTTTGCAAGCA+GGG | + | Chr1:14574143-14574162 | MsG0180001010.01.T01:intron | 40.0% | |
| GAGAGTCGAAAGATCATTAG+TGG | + | Chr1:14574409-14574428 | MsG0180001010.01.T01:CDS | 40.0% | |
| GGTGGGTGACAAAATAAACA+AGG | + | Chr1:14573715-14573734 | MsG0180001010.01.T01:intron | 40.0% | |
| TCTAATGGTGTGAAGCTAAC+CGG | + | Chr1:14573784-14573803 | MsG0180001010.01.T01:intron | 40.0% | |
| ! | ACACAATTGTGTTGTTGCCT+TGG | - | Chr1:14574335-14574354 | None:intergenic | 40.0% |
| ! | TGTAGTCACCTTTTACATGC+TGG | + | Chr1:14573900-14573919 | MsG0180001010.01.T01:intron | 40.0% |
| !! | AGTTCCTCATTTGTTGTTGG+AGG | - | Chr1:14574238-14574257 | None:intergenic | 40.0% |
| !! | CACAGTTCCTCATTTGTTGT+TGG | - | Chr1:14574241-14574260 | None:intergenic | 40.0% |
| !! | TTTTGGAGGAGAAGAGATAG+AGG | - | Chr1:14574487-14574506 | None:intergenic | 40.0% |
| !!! | GCATCAATGTTTTTGGTCCT+TGG | - | Chr1:14574193-14574212 | None:intergenic | 40.0% |
| AACCATGAGGCTCAATTCAG+TGG | + | Chr1:14574514-14574533 | MsG0180001010.01.T01:CDS | 45.0% | |
| AACTGCTCGTGGATTCAACA+TGG | + | Chr1:14574543-14574562 | MsG0180001010.01.T01:CDS | 45.0% | |
| CAGAGCTTGATTGTGCTGAA+CGG | - | Chr1:14572925-14572944 | None:intergenic | 45.0% | |
| CCAAAACTATCGCAACCATG+AGG | + | Chr1:14574501-14574520 | MsG0180001010.01.T01:CDS | 45.0% | |
| CTCGTGGATTCAACATGGAT+GGG | + | Chr1:14574548-14574567 | MsG0180001010.01.T01:CDS | 45.0% | |
| GAGCAGATCTGCGTATACAA+TGG | + | Chr1:14573535-14573554 | MsG0180001010.01.T01:intron | 45.0% | |
| GATTTAGTCCGTTTGCAAGC+AGG | + | Chr1:14574142-14574161 | MsG0180001010.01.T01:intron | 45.0% | |
| GTGGCAAACCAGCATGTAAA+AGG | - | Chr1:14573911-14573930 | None:intergenic | 45.0% | |
| TGGATTCAACATGGATGGGT+CGG | + | Chr1:14574552-14574571 | MsG0180001010.01.T01:CDS | 45.0% | |
| ! | CCTCATGGTTGCGATAGTTT+TGG | - | Chr1:14574504-14574523 | None:intergenic | 45.0% |
| !!! | CATGGTTGCGATAGTTTTGG+AGG | - | Chr1:14574501-14574520 | None:intergenic | 45.0% |
| !! | AATAATAAATTAATTATTTG+AGG | + | Chr1:14573643-14573662 | MsG0180001010.01.T01:intron | 5.0% |
| ATATGGGCCATGGGTAGGTT+AGG | + | Chr1:14574442-14574461 | MsG0180001010.01.T01:CDS | 50.0% | |
| ATGGACTCCCTGCTTGCAAA+CGG | - | Chr1:14574153-14574172 | None:intergenic | 50.0% | |
| CATGGGTAGGTTAGGGTTTG+AGG | + | Chr1:14574450-14574469 | MsG0180001010.01.T01:CDS | 50.0% | |
| CGTTCAGCACAATCAAGCTC+TGG | + | Chr1:14572923-14572942 | MsG0180001010.01.T01:CDS | 50.0% | |
| CTCAAACCCTAACCTACCCA+TGG | - | Chr1:14574452-14574471 | None:intergenic | 50.0% | |
| GCATTTCTCAACAGCCTCAG+TGG | - | Chr1:14574383-14574402 | None:intergenic | 50.0% | |
| GCTCGTGGATTCAACATGGA+TGG | + | Chr1:14574547-14574566 | MsG0180001010.01.T01:CDS | 50.0% | |
| GGATTCAACATGGATGGGTC+GGG | + | Chr1:14574553-14574572 | MsG0180001010.01.T01:CDS | 50.0% | |
| TATGGGCCATGGGTAGGTTA+GGG | + | Chr1:14574443-14574462 | MsG0180001010.01.T01:CDS | 50.0% | |
| TGCCACTGAATTGAGCCTCA+TGG | - | Chr1:14574519-14574538 | None:intergenic | 50.0% | |
| CATGGGCATCATCACCACTG+AGG | + | Chr1:14574366-14574385 | MsG0180001010.01.T01:CDS | 55.0% | |
| AACATGGATGGGTCGGGTGC+TGG | + | Chr1:14574559-14574578 | MsG0180001010.01.T01:CDS | 60.0% | |
| AGTGGCACGTCAACTGCTCG+TGG | + | Chr1:14574532-14574551 | MsG0180001010.01.T01:CDS | 60.0% | |
| GGTGGCTCGAGCAGTGGTAA+TGG | + | Chr1:14574580-14574599 | MsG0180001010.01.T01:CDS | 60.0% | |
| !! | ATGGATGGGTCGGGTGCTGG+TGG | + | Chr1:14574562-14574581 | MsG0180001010.01.T01:CDS | 65.0% |
| !! | GGTGCTGGTGGCTCGAGCAG+TGG | + | Chr1:14574574-14574593 | MsG0180001010.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 14572890 | 14574612 | 14572890 | ID=MsG0180001010.01;Name=MsG0180001010.01 |
| Chr1 | mRNA | 14572890 | 14574612 | 14572890 | ID=MsG0180001010.01.T01;Parent=MsG0180001010.01;Name=MsG0180001010.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|0|0.5|2|0|172 |
| Chr1 | exon | 14572890 | 14572944 | 14572890 | ID=MsG0180001010.01.T01:exon:9880;Parent=MsG0180001010.01.T01 |
| Chr1 | exon | 14574149 | 14574612 | 14574149 | ID=MsG0180001010.01.T01:exon:9881;Parent=MsG0180001010.01.T01 |
| Chr1 | CDS | 14572890 | 14572944 | 14572890 | ID=MsG0180001010.01.T01:cds;Parent=MsG0180001010.01.T01 |
| Chr1 | CDS | 14574149 | 14574612 | 14574149 | ID=MsG0180001010.01.T01:cds;Parent=MsG0180001010.01.T01 |
| Gene Sequence |
| Protein sequence |
