AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001011.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001011.01.T01 MTR_1g029100 83.516 91 14 1 93 183 1 90 1.97e-48 153
MsG0180001011.01.T01 MTR_1g072790 38.393 112 59 1 89 190 23 134 1.17e-19 82.4
MsG0180001011.01.T01 MTR_1g039040 40.816 98 57 1 95 192 6 102 1.62e-19 82.4
MsG0180001011.01.T01 MTR_3g058980 36.752 117 72 2 83 198 14 129 2.57e-19 82.0
MsG0180001011.01.T01 MTR_4g133952 40.000 85 51 0 100 184 63 147 2.76e-19 82.8
MsG0180001011.01.T01 MTR_7g061270 37.383 107 64 1 100 203 31 137 8.72e-19 80.1
MsG0180001011.01.T01 MTR_8g091720 39.604 101 60 1 100 200 33 132 1.37e-18 80.1
MsG0180001011.01.T01 MTR_1g029070 33.594 128 84 1 56 183 14 140 1.43e-18 79.7
MsG0180001011.01.T01 MTR_1g088860 37.000 100 63 0 85 184 26 125 1.53e-18 80.1
MsG0180001011.01.T01 MTR_7g100650 37.383 107 64 1 100 203 31 137 1.60e-18 79.3
MsG0180001011.01.T01 MTR_5g095740 36.697 109 69 0 76 184 4 112 2.38e-18 79.3
MsG0180001011.01.T01 MTR_0392s0020 33.628 113 64 1 72 184 6 107 2.68e-18 77.8
MsG0180001011.01.T01 MTR_2g026710 41.573 89 51 1 100 188 22 109 3.93e-18 78.2
MsG0180001011.01.T01 MTR_4g133938 41.176 85 50 0 100 184 24 108 4.47e-18 77.4
MsG0180001011.01.T01 MTR_4g119500 34.259 108 71 0 77 184 4 111 6.39e-18 76.6
MsG0180001011.01.T01 MTR_8g093920 41.667 84 49 0 100 183 45 128 1.54e-16 75.1
MsG0180001011.01.T01 MTR_1g083070 35.294 85 55 0 100 184 9 93 2.22e-16 72.4
MsG0180001011.01.T01 MTR_1g028480 36.957 92 44 1 125 202 19 110 4.37e-14 66.2
MsG0180001011.01.T01 MTR_5g095900 32.653 98 65 1 87 183 7 104 1.39e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001011.01.T01 AT2G38880 40.566 106 62 1 95 199 21 126 4.32e-21 85.1
MsG0180001011.01.T01 AT2G38880 39.815 108 62 1 95 199 21 128 8.48e-21 84.7
MsG0180001011.01.T01 AT2G38880 39.815 108 62 1 95 199 21 128 8.79e-21 84.3
MsG0180001011.01.T01 AT2G38880 39.815 108 62 1 95 199 21 128 8.79e-21 84.3
MsG0180001011.01.T01 AT2G38880 39.815 108 62 1 95 199 21 128 8.79e-21 84.3
MsG0180001011.01.T01 AT3G53340 41.509 106 59 1 100 202 34 139 2.14e-20 84.3
MsG0180001011.01.T01 AT3G53340 41.509 106 59 1 100 202 34 139 2.14e-20 84.3
MsG0180001011.01.T01 AT2G37060 40.566 106 60 1 100 202 35 140 7.10e-20 83.2
MsG0180001011.01.T01 AT2G37060 40.566 106 60 1 100 202 35 140 7.10e-20 83.2
MsG0180001011.01.T01 AT2G37060 40.566 106 60 1 100 202 35 140 7.10e-20 83.2
MsG0180001011.01.T01 AT2G38880 41.111 90 53 0 95 184 21 110 1.96e-19 80.1
MsG0180001011.01.T01 AT2G38880 41.111 90 53 0 95 184 21 110 4.98e-19 80.5
MsG0180001011.01.T01 AT2G38880 41.111 90 53 0 95 184 21 110 4.98e-19 80.5
MsG0180001011.01.T01 AT2G38880 41.111 90 53 0 95 184 21 110 6.00e-19 80.1
MsG0180001011.01.T01 AT2G38880 41.111 90 53 0 95 184 21 110 6.00e-19 80.1
MsG0180001011.01.T01 AT2G38880 41.111 90 53 0 95 184 21 110 6.00e-19 80.1
MsG0180001011.01.T01 AT4G14540 42.353 85 49 0 100 184 26 110 6.65e-19 80.1
MsG0180001011.01.T01 AT5G47640 43.529 85 48 0 100 184 32 116 1.52e-18 80.1
MsG0180001011.01.T01 AT5G47670 36.842 95 60 0 100 194 34 128 7.27e-18 78.6
MsG0180001011.01.T01 AT3G53340 43.529 85 48 0 100 184 34 118 7.38e-18 76.3
MsG0180001011.01.T01 AT2G47810 41.667 84 49 0 100 183 56 139 9.18e-18 77.0
MsG0180001011.01.T01 AT3G53340 41.000 100 58 1 95 194 29 127 1.14e-17 76.6
MsG0180001011.01.T01 AT3G53340 41.000 100 58 1 95 194 29 127 1.14e-17 76.6
MsG0180001011.01.T01 AT1G21970 36.364 110 69 1 75 184 40 148 1.34e-17 78.6
MsG0180001011.01.T01 AT5G47670 36.842 95 60 0 100 194 63 157 1.51e-17 78.2
MsG0180001011.01.T01 AT5G47670 36.842 95 60 0 100 194 63 157 1.51e-17 78.2
MsG0180001011.01.T01 AT2G13570 41.667 84 49 0 100 183 41 124 2.53e-15 72.0
MsG0180001011.01.T01 AT1G09030 31.522 92 63 0 93 184 1 92 6.77e-14 66.2

Find 49 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGTTTGTGTCTAAATTTA+AGG 0.219243 1:+14587874 MsG0180001011.01.T01:CDS
TGCACTTCCTCGCCCATTGC+TGG 0.284557 1:-14587761 None:intergenic
TTTCCGCTGATGATTTACTA+TGG 0.336830 1:+14587951 MsG0180001011.01.T01:CDS
ATTTACTATGGACGATGAAT+AGG 0.363355 1:+14587963 MsG0180001011.01.T01:CDS
GAGGAACATGTTCGGTCTCT+TGG 0.363705 1:+14587995 MsG0180001011.01.T01:CDS
CGGGCAAGAATGGTCTAACT+TGG 0.407726 1:+14586860 MsG0180001011.01.T01:CDS
GATGTTCTACATTGGCTTGT+TGG 0.413393 1:-14587919 None:intergenic
CTCAAGGAATTTATTGCCTC+GGG 0.422825 1:+14586841 MsG0180001011.01.T01:CDS
GATGAATAGGTTGGGCTTTG+AGG 0.431149 1:+14587976 MsG0180001011.01.T01:CDS
AGGAACATGTTCGGTCTCTT+GGG 0.445239 1:+14587996 MsG0180001011.01.T01:CDS
CCATCGCATCCACTATGTAT+TGG 0.445513 1:+14585847 MsG0180001011.01.T01:CDS
TTCATTTCAAAAGTTTACTT+AGG 0.450967 1:+14585885 MsG0180001011.01.T01:CDS
TTTATTGCCTCGGGCAAGAA+TGG 0.452266 1:+14586850 MsG0180001011.01.T01:CDS
CTATGGACGATGAATAGGTT+GGG 0.452990 1:+14587968 MsG0180001011.01.T01:CDS
ACCAACAACAACACTGGCAT+TGG 0.458777 1:+14587716 MsG0180001011.01.T01:CDS
GACTCTTGTCACATGATTGA+TGG 0.464195 1:-14587792 None:intergenic
TCCAATGCCAGTGTTGTTGT+TGG 0.470529 1:-14587717 None:intergenic
TCAACGTTGGTCATCATCAT+TGG 0.472149 1:-14588080 None:intergenic
CGCAAGAACATGGATGGGTC+AGG 0.479316 1:+14588037 MsG0180001011.01.T01:CDS
AATCTAAAGTCGAGAAGCCT+TGG 0.500950 1:-14585914 None:intergenic
AACTATCGCAAGAACATGGA+TGG 0.501574 1:+14588031 MsG0180001011.01.T01:CDS
TGGGCTTTGAGGAACATGTT+CGG 0.504221 1:+14587987 MsG0180001011.01.T01:CDS
CAACATTCAACTCCAGCAAT+GGG 0.504417 1:+14587749 MsG0180001011.01.T01:CDS
TCTCAAGGAATTTATTGCCT+CGG 0.510661 1:+14586840 MsG0180001011.01.T01:CDS
CCATTGCTGGAGTTGAATGT+TGG 0.510977 1:-14587748 None:intergenic
GCCAGTGTTGTTGTTGGTGG+CGG 0.514598 1:-14587711 None:intergenic
AATGCCAGTGTTGTTGTTGG+TGG 0.520685 1:-14587714 None:intergenic
TCATCAGTGATTATTGTGTC+TGG 0.528332 1:-14587833 None:intergenic
TTGCTTCTATTAGATTCTCA+AGG 0.531801 1:+14586825 MsG0180001011.01.T01:intron
ACTATGGACGATGAATAGGT+TGG 0.532041 1:+14587967 MsG0180001011.01.T01:CDS
ATTCTCTTGATGTTCTACAT+TGG 0.543777 1:-14587927 None:intergenic
CCAACATTCAACTCCAGCAA+TGG 0.549683 1:+14587748 MsG0180001011.01.T01:CDS
AATAATCACTGATGATGCTA+AGG 0.558102 1:+14587841 MsG0180001011.01.T01:CDS
TAAAGCATTCCAATACATAG+TGG 0.560363 1:-14585856 None:intergenic
TTCAACTCCAGCAATGGGCG+AGG 0.564498 1:+14587754 MsG0180001011.01.T01:CDS
TGTTAATTTCATATCAACGT+TGG 0.572546 1:-14588093 None:intergenic
ATGGATGGGTCAGGTGCTAG+TGG 0.576300 1:+14588046 MsG0180001011.01.T01:CDS
ACTCTTGTCACATGATTGAT+GGG 0.580392 1:-14587791 None:intergenic
TGTGTCTAAATTTAAGGACA+AGG 0.583205 1:+14587880 MsG0180001011.01.T01:CDS
ACCGCCACCAACAACAACAC+TGG 0.598342 1:+14587710 MsG0180001011.01.T01:CDS
CCAATACATAGTGGATGCGA+TGG 0.614598 1:-14585847 None:intergenic
GGGCAAGAATGGTCTAACTT+GGG 0.619695 1:+14586861 MsG0180001011.01.T01:CDS
TAAGGACAAGGTCACAAGTG+AGG 0.624680 1:+14587892 MsG0180001011.01.T01:CDS
AGTTAGACCATTCTTGCCCG+AGG 0.632379 1:-14586857 None:intergenic
TCAGTGATTATTGTGTCTGG+TGG 0.634070 1:-14587830 None:intergenic
ACTATCGCAAGAACATGGAT+GGG 0.635414 1:+14588032 MsG0180001011.01.T01:CDS
AGATTTATTCATTGTTAACG+AGG 0.635895 1:+14585932 MsG0180001011.01.T01:CDS
CGTCCATAGTAAATCATCAG+CGG 0.656317 1:-14587954 None:intergenic
GTTTACTTAGGAATTGACCA+AGG 0.670023 1:+14585897 MsG0180001011.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATAAAATAAAAAAT+GGG + Chr1:14586120-14586139 MsG0180001011.01.T01:intron 0.0%
!! TAATAAATTAAAAATATTAA+AGG - Chr1:14587028-14587047 None:intergenic 0.0%
!! TTAAAAAATAAAATAAAAAA+TGG + Chr1:14586119-14586138 MsG0180001011.01.T01:intron 0.0%
!! AAATAATTATATCTAATATG+AGG - Chr1:14586244-14586263 None:intergenic 10.0%
!! ATTAAAAAAATTAAAATACG+AGG - Chr1:14586694-14586713 None:intergenic 10.0%
!! TATTGAAATTAAATATAAAG+AGG + Chr1:14586318-14586337 MsG0180001011.01.T01:intron 10.0%
!!! TCTTTTAGTATTTTTTTTAT+TGG - Chr1:14586073-14586092 None:intergenic 10.0%
!! ACTTTATAATAATTATACCA+AGG - Chr1:14586197-14586216 None:intergenic 15.0%
!!! AATTTTACGTTTCTATTTTA+TGG + Chr1:14586440-14586459 MsG0180001011.01.T01:intron 15.0%
!!! ATCTTGAAATTAATTTTGTT+CGG + Chr1:14587115-14587134 MsG0180001011.01.T01:intron 15.0%
!!! ATTTTACGTTTCTATTTTAT+GGG + Chr1:14586441-14586460 MsG0180001011.01.T01:intron 15.0%
!!! TAAACTTTTGAAATGAAATT+AGG - Chr1:14585882-14585901 None:intergenic 15.0%
!! AAAGAAATGATACAAAACAA+AGG - Chr1:14585979-14585998 None:intergenic 20.0%
!! AATAAAATAAAAAATGGGGA+TGG + Chr1:14586125-14586144 MsG0180001011.01.T01:intron 20.0%
!! AATCTAATAGAAGCAATTAA+GGG - Chr1:14586821-14586840 None:intergenic 20.0%
!! ACTTTGTAAAATATTGAATC+TGG + Chr1:14586720-14586739 MsG0180001011.01.T01:intron 20.0%
!! ATAAAATAAAAAATGGGGAT+GGG + Chr1:14586126-14586145 MsG0180001011.01.T01:intron 20.0%
!! ATACTCTTCTTAATTTATAG+AGG - Chr1:14586481-14586500 None:intergenic 20.0%
!! ATTGTTTGTGTCTAAATTTA+AGG + Chr1:14587874-14587893 MsG0180001011.01.T01:CDS 20.0%
!! TAAATTTGACTATTGAACAA+TGG - Chr1:14586545-14586564 None:intergenic 20.0%
!! TTCATTAATAGAATCAGATA+TGG - Chr1:14586272-14586291 None:intergenic 20.0%
!! TTCATTTCAAAAGTTTACTT+AGG + Chr1:14585885-14585904 MsG0180001011.01.T01:CDS 20.0%
!!! GTATTTTTTTTATTGGTTAC+TGG - Chr1:14586066-14586085 None:intergenic 20.0%
!!! TACCAAATCTTTTAATTTTG+AGG + Chr1:14587626-14587645 MsG0180001011.01.T01:intron 20.0%
!!! TGAATGAAATTTTGATTGAA+GGG + Chr1:14586940-14586959 MsG0180001011.01.T01:intron 20.0%
!!! TGATAATTTTTTAACTACCT+TGG + Chr1:14586177-14586196 MsG0180001011.01.T01:intron 20.0%
!!! TTGAATGAAATTTTGATTGA+AGG + Chr1:14586939-14586958 MsG0180001011.01.T01:intron 20.0%
!!! TTGTTAACCATTTTTGATAT+GGG + Chr1:14586901-14586920 MsG0180001011.01.T01:CDS 20.0%
!!! TTTTACGTTTCTATTTTATG+GGG + Chr1:14586442-14586461 MsG0180001011.01.T01:intron 20.0%
! AAAACAACTTTGCTAAGATT+TGG + Chr1:14587165-14587184 MsG0180001011.01.T01:intron 25.0%
! AAATAAAGTAAAAGAGATCG+AGG - Chr1:14586997-14587016 None:intergenic 25.0%
! AACAAAACTGACGTATTTAA+TGG - Chr1:14587336-14587355 None:intergenic 25.0%
! AAGAAATAAAGTGAGAGAAA+AGG + Chr1:14587287-14587306 MsG0180001011.01.T01:intron 25.0%
! ACAAAACTGACGTATTTAAT+GGG - Chr1:14587335-14587354 None:intergenic 25.0%
! AGATTTATTCATTGTTAACG+AGG + Chr1:14585932-14585951 MsG0180001011.01.T01:CDS 25.0%
! ATCTAATAGAAGCAATTAAG+GGG - Chr1:14586820-14586839 None:intergenic 25.0%
! ATTTAAGTCCTGAAGTAATA+TGG + Chr1:14586560-14586579 MsG0180001011.01.T01:intron 25.0%
! CTCCTCAAAATTAAAAGATT+TGG - Chr1:14587631-14587650 None:intergenic 25.0%
! GAATCTAATAGAAGCAATTA+AGG - Chr1:14586822-14586841 None:intergenic 25.0%
!! CTTTTCTTCTTTTTAATCGA+AGG - Chr1:14587533-14587552 None:intergenic 25.0%
!! GTATTTTCCCATATCAAAAA+TGG - Chr1:14586911-14586930 None:intergenic 25.0%
!! TTGTGAGCGTTATAAATTTT+GGG + Chr1:14587057-14587076 MsG0180001011.01.T01:intron 25.0%
!! TTTTTCTCGATATATTTGAG+TGG + Chr1:14585996-14586015 MsG0180001011.01.T01:intron 25.0%
!!! CTTGTTAACCATTTTTGATA+TGG + Chr1:14586900-14586919 MsG0180001011.01.T01:CDS 25.0%
!!! GAATGAAATTTTGATTGAAG+GGG + Chr1:14586941-14586960 MsG0180001011.01.T01:intron 25.0%
AAAATCATCCTTTATACACG+TGG + Chr1:14586389-14586408 MsG0180001011.01.T01:intron 30.0%
AAATAAAGTGAGAGAAAAGG+TGG + Chr1:14587290-14587309 MsG0180001011.01.T01:intron 30.0%
AATAAAGTGAGAGAAAAGGT+GGG + Chr1:14587291-14587310 MsG0180001011.01.T01:intron 30.0%
ATTCTCTTGATGTTCTACAT+TGG - Chr1:14587930-14587949 None:intergenic 30.0%
ATTTACTATGGACGATGAAT+AGG + Chr1:14587963-14587982 MsG0180001011.01.T01:CDS 30.0%
ATTTGACTATTGAACAATGG+TGG - Chr1:14586542-14586561 None:intergenic 30.0%
CAAAACTGACGTATTTAATG+GGG - Chr1:14587334-14587353 None:intergenic 30.0%
GAAATGATACAAAACAAAGG+AGG - Chr1:14585976-14585995 None:intergenic 30.0%
TCTAATAGTGTGAAACTAAC+TGG + Chr1:14587377-14587396 MsG0180001011.01.T01:intron 30.0%
TGTGTCTAAATTTAAGGACA+AGG + Chr1:14587880-14587899 MsG0180001011.01.T01:CDS 30.0%
TTGCTTCTATTAGATTCTCA+AGG + Chr1:14586825-14586844 MsG0180001011.01.T01:intron 30.0%
TTGTAAAACATTGTAGCTGA+AGG + Chr1:14587683-14587702 MsG0180001011.01.T01:intron 30.0%
! AATAATCACTGATGATGCTA+AGG + Chr1:14587841-14587860 MsG0180001011.01.T01:CDS 30.0%
! CTTGTGAGCGTTATAAATTT+TGG + Chr1:14587056-14587075 MsG0180001011.01.T01:intron 30.0%
! TAAAGCATTCCAATACATAG+TGG - Chr1:14585859-14585878 None:intergenic 30.0%
! TCAGCTACAATGTTTTACAA+TGG - Chr1:14587683-14587702 None:intergenic 30.0%
! TGTGAGCGTTATAAATTTTG+GGG + Chr1:14587058-14587077 MsG0180001011.01.T01:intron 30.0%
!! TTTTGAGTGTGAATCGAATT+CGG - Chr1:14587086-14587105 None:intergenic 30.0%
!!! GTCTTTTTTTAAGCGATAAG+TGG - Chr1:14586041-14586060 None:intergenic 30.0%
AAAGAGATCGAGGTCAAATA+TGG - Chr1:14586987-14587006 None:intergenic 35.0%
AAGAGATCGAGGTCAAATAT+GGG - Chr1:14586986-14587005 None:intergenic 35.0%
ACTCTTGTCACATGATTGAT+GGG - Chr1:14587794-14587813 None:intergenic 35.0%
ATGATACAAAACAAAGGAGG+AGG - Chr1:14585973-14585992 None:intergenic 35.0%
CAAAAACTATCGCAAGAACA+TGG + Chr1:14588027-14588046 MsG0180001011.01.T01:CDS 35.0%
GAGCAGATTTGTGTATACAA+TGG + Chr1:14587137-14587156 MsG0180001011.01.T01:intron 35.0%
GTTTACTTAGGAATTGACCA+AGG + Chr1:14585897-14585916 MsG0180001011.01.T01:CDS 35.0%
TCATCAGTGATTATTGTGTC+TGG - Chr1:14587836-14587855 None:intergenic 35.0%
TCTCAAGGAATTTATTGCCT+CGG + Chr1:14586840-14586859 MsG0180001011.01.T01:CDS 35.0%
TTTCCGCTGATGATTTACTA+TGG + Chr1:14587951-14587970 MsG0180001011.01.T01:CDS 35.0%
! AATATGAGGTGTTATCTCAG+TGG - Chr1:14586230-14586249 None:intergenic 35.0%
! GCTACAATGTTTTACAATGG+AGG - Chr1:14587680-14587699 None:intergenic 35.0%
! GTAGTCACATTTTTACAAGC+TGG + Chr1:14587500-14587519 MsG0180001011.01.T01:intron 35.0%
! TGTTCTTGCGATAGTTTTTG+AGG - Chr1:14588027-14588046 None:intergenic 35.0%
AACTATCGCAAGAACATGGA+TGG + Chr1:14588031-14588050 MsG0180001011.01.T01:CDS 40.0%
ACTATCGCAAGAACATGGAT+GGG + Chr1:14588032-14588051 MsG0180001011.01.T01:CDS 40.0%
ACTATGGACGATGAATAGGT+TGG + Chr1:14587967-14587986 MsG0180001011.01.T01:CDS 40.0%
AGCGATAAGTGGTGCAATAA+AGG - Chr1:14586030-14586049 None:intergenic 40.0%
ATACAAAACAAAGGAGGAGG+AGG - Chr1:14585970-14585989 None:intergenic 40.0%
ATCCTTTATACACGTGGACA+TGG + Chr1:14586395-14586414 MsG0180001011.01.T01:intron 40.0%
CAACATTCAACTCCAGCAAT+GGG + Chr1:14587749-14587768 MsG0180001011.01.T01:CDS 40.0%
CAGATCTTGATTGTGTCGAA+CGG - Chr1:14586614-14586633 None:intergenic 40.0%
CGTCCATAGTAAATCATCAG+CGG - Chr1:14587957-14587976 None:intergenic 40.0%
CTATGGACGATGAATAGGTT+GGG + Chr1:14587968-14587987 MsG0180001011.01.T01:CDS 40.0%
CTCAAGGAATTTATTGCCTC+GGG + Chr1:14586841-14586860 MsG0180001011.01.T01:CDS 40.0%
GACTCTTGTCACATGATTGA+TGG - Chr1:14587795-14587814 None:intergenic 40.0%
TCAACGTTGGTCATCATCAT+TGG - Chr1:14588083-14588102 None:intergenic 40.0%
TCAGTGATTATTGTGTCTGG+TGG - Chr1:14587833-14587852 None:intergenic 40.0%
! AATCTAAAGTCGAGAAGCCT+TGG - Chr1:14585917-14585936 None:intergenic 40.0%
! GAACGGTTGTTGTTAGATGA+GGG - Chr1:14586597-14586616 None:intergenic 40.0%
!! GATGTTCTACATTGGCTTGT+TGG - Chr1:14587922-14587941 None:intergenic 40.0%
ACCAACAACAACACTGGCAT+TGG + Chr1:14587716-14587735 MsG0180001011.01.T01:CDS 45.0%
AGGAACATGTTCGGTCTCTT+GGG + Chr1:14587996-14588015 MsG0180001011.01.T01:CDS 45.0%
CCAACATTCAACTCCAGCAA+TGG + Chr1:14587748-14587767 MsG0180001011.01.T01:CDS 45.0%
CCATCGCATCCACTATGTAT+TGG + Chr1:14585847-14585866 MsG0180001011.01.T01:CDS 45.0%
CCATTGCTGGAGTTGAATGT+TGG - Chr1:14587751-14587770 None:intergenic 45.0%
CGTTCGACACAATCAAGATC+TGG + Chr1:14586612-14586631 MsG0180001011.01.T01:intron 45.0%
GGGCAAGAATGGTCTAACTT+GGG + Chr1:14586861-14586880 MsG0180001011.01.T01:CDS 45.0%
GTCCATGTCCACGTGTATAA+AGG - Chr1:14586400-14586419 None:intergenic 45.0%
TAAGGACAAGGTCACAAGTG+AGG + Chr1:14587892-14587911 MsG0180001011.01.T01:CDS 45.0%
TCCACGCTCCATATTACTTC+AGG - Chr1:14586571-14586590 None:intergenic 45.0%
TCCTGAAGTAATATGGAGCG+TGG + Chr1:14586567-14586586 MsG0180001011.01.T01:intron 45.0%
TTTATTGCCTCGGGCAAGAA+TGG + Chr1:14586850-14586869 MsG0180001011.01.T01:CDS 45.0%
! AATGCCAGTGTTGTTGTTGG+TGG - Chr1:14587717-14587736 None:intergenic 45.0%
! ACACGTGGACATGGACTAAT+AGG + Chr1:14586404-14586423 MsG0180001011.01.T01:intron 45.0%
! CACGTGGACATGGACTAATA+GGG + Chr1:14586405-14586424 MsG0180001011.01.T01:intron 45.0%
! CGAACGGTTGTTGTTAGATG+AGG - Chr1:14586598-14586617 None:intergenic 45.0%
! GATGAATAGGTTGGGCTTTG+AGG + Chr1:14587976-14587995 MsG0180001011.01.T01:CDS 45.0%
! TCCAATGCCAGTGTTGTTGT+TGG - Chr1:14587720-14587739 None:intergenic 45.0%
!! CCAATACATAGTGGATGCGA+TGG - Chr1:14585850-14585869 None:intergenic 45.0%
!! TGGGCTTTGAGGAACATGTT+CGG + Chr1:14587987-14588006 MsG0180001011.01.T01:CDS 45.0%
!! AAAAAATAAAATAAAAAATG+GGG + Chr1:14586121-14586140 MsG0180001011.01.T01:intron 5.0%
!! TGTTAAAAATATATATTATT+TGG - Chr1:14586296-14586315 None:intergenic 5.0%
!! TTAATTATAATAATTAATTC+AGG + Chr1:14587237-14587256 MsG0180001011.01.T01:intron 5.0%
AGTTAGACCATTCTTGCCCG+AGG - Chr1:14586860-14586879 None:intergenic 50.0%
CGGGCAAGAATGGTCTAACT+TGG + Chr1:14586860-14586879 MsG0180001011.01.T01:CDS 50.0%
GAGGAACATGTTCGGTCTCT+TGG + Chr1:14587995-14588014 MsG0180001011.01.T01:CDS 50.0%
ACCGCCACCAACAACAACAC+TGG + Chr1:14587710-14587729 MsG0180001011.01.T01:CDS 55.0%
ATGGATGGGTCAGGTGCTAG+TGG + Chr1:14588046-14588065 MsG0180001011.01.T01:CDS 55.0%
CGCAAGAACATGGATGGGTC+AGG + Chr1:14588037-14588056 MsG0180001011.01.T01:CDS 55.0%
TTCAACTCCAGCAATGGGCG+AGG + Chr1:14587754-14587773 MsG0180001011.01.T01:CDS 55.0%
! GCCAGTGTTGTTGTTGGTGG+CGG - Chr1:14587714-14587733 None:intergenic 55.0%
TGCACTTCCTCGCCCATTGC+TGG - Chr1:14587764-14587783 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 14585843 14588102 14585843 ID=MsG0180001011.01;Name=MsG0180001011.01
Chr1 mRNA 14585843 14588102 14585843 ID=MsG0180001011.01.T01;Parent=MsG0180001011.01;Name=MsG0180001011.01.T01;_AED=0.47;_eAED=0.62;_QI=0|0|0|1|0|0.33|3|0|203
Chr1 exon 14585843 14585953 14585843 ID=MsG0180001011.01.T01:exon:9887;Parent=MsG0180001011.01.T01
Chr1 exon 14586838 14586934 14586838 ID=MsG0180001011.01.T01:exon:9888;Parent=MsG0180001011.01.T01
Chr1 exon 14587699 14588102 14587699 ID=MsG0180001011.01.T01:exon:9889;Parent=MsG0180001011.01.T01
Chr1 CDS 14585843 14585953 14585843 ID=MsG0180001011.01.T01:cds;Parent=MsG0180001011.01.T01
Chr1 CDS 14586838 14586934 14586838 ID=MsG0180001011.01.T01:cds;Parent=MsG0180001011.01.T01
Chr1 CDS 14587699 14588102 14587699 ID=MsG0180001011.01.T01:cds;Parent=MsG0180001011.01.T01
Gene Sequence

>MsG0180001011.01.T01

ATGTCCATCGCATCCACTATGTATTGGAATGCTTTACCTAATTTCATTTCAAAAGTTTACTTAGGAATTGACCAAGGCTTCTCGACTTTAGATTTATTCATTGTTAACGAGATTCTCAAGGAATTTATTGCCTCGGGCAAGAATGGTCTAACTTGGGATATGATTGTGCATCACTTGTTAACCATTTTTGATATGGGAAAATACTTTACTGAAGGAAACACCGCCACCAACAACAACACTGGCATTGGAACTGAGAACCAACATTCAACTCCAGCAATGGGCGAGGAAGTGCATAAGATTCCCATCAATCATGTGACAAGAGTCATGCAGAATGTTCTTCCACCAGACACAATAATCACTGATGATGCTAAGGAGTTAATGCAATTGTTTGTGTCTAAATTTAAGGACAAGGTCACAAGTGAGGCTTTCCAACAAGCCAATGTAGAACATCAAGAGAATGTTTCCGCTGATGATTTACTATGGACGATGAATAGGTTGGGCTTTGAGGAACATGTTCGGTCTCTTGGGAAATACCTCAAAAACTATCGCAAGAACATGGATGGGTCAGGTGCTAGTGGCTCAAACAATGCCAATGATGATGACCAACGTTGA
Protein sequence

>MsG0180001011.01.T01

MSIASTMYWNALPNFISKVYLGIDQGFSTLDLFIVNEILKEFIASGKNGLTWDMIVHHLLTIFDMGKYFTEGNTATNNNTGIGTENQHSTPAMGEEVHKIPINHVTRVMQNVLPPDTIITDDAKELMQLFVSKFKDKVTSEAFQQANVEHQENVSADDLLWTMNRLGFEEHVRSLGKYLKNYRKNMDGSGASGSNNANDDDQR*