AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001058.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001058.01.T01 MTR_1g029670 91.489 141 12 0 1 141 1 141 4.36e-92 266
MsG0180001058.01.T01 MTR_3g088615 70.186 161 46 2 1 159 1 161 4.97e-77 228
MsG0180001058.01.T01 MTR_3g113030 46.763 139 74 0 1 139 1 139 2.64e-41 139
MsG0180001058.01.T01 MTR_5g021270 44.755 143 75 2 1 139 1 143 7.12e-36 125
MsG0180001058.01.T01 MTR_5g021270 44.755 143 75 2 1 139 1 143 7.79e-36 125
MsG0180001058.01.T01 MTR_7g075850 44.138 145 77 1 1 141 1 145 2.23e-33 119
MsG0180001058.01.T01 MTR_1g038300 40.541 148 78 2 1 139 1 147 2.69e-33 119
MsG0180001058.01.T01 MTR_7g016630 44.444 144 76 2 1 141 1 143 7.39e-33 118
MsG0180001058.01.T01 MTR_3g452380 40.667 150 82 2 1 145 16 163 3.06e-32 116
MsG0180001058.01.T01 MTR_8g033270 43.836 146 75 2 1 141 1 144 3.31e-32 116
MsG0180001058.01.T01 MTR_8g097090 43.046 151 71 3 1 141 1 146 1.08e-31 115
MsG0180001058.01.T01 MTR_3g005530 40.667 150 82 2 1 145 1 148 2.34e-31 113
MsG0180001058.01.T01 MTR_4g109830 45.205 146 74 3 1 141 1 145 2.58e-31 113
MsG0180001058.01.T01 MTR_5g046790 42.466 146 78 3 1 141 1 145 3.11e-30 110
MsG0180001058.01.T01 MTR_3g084980 41.060 151 74 3 1 141 1 146 6.04e-30 110
MsG0180001058.01.T01 MTR_2g017865 41.096 146 79 3 1 141 16 159 6.95e-30 110
MsG0180001058.01.T01 MTR_8g087860 40.000 150 83 2 1 145 17 164 7.89e-30 110
MsG0180001058.01.T01 MTR_7g016600 42.759 145 78 2 1 141 1 144 9.31e-30 110
MsG0180001058.01.T01 MTR_6g464720 40.397 151 83 2 1 145 1 150 1.82e-29 109
MsG0180001058.01.T01 MTR_8g066260 41.781 146 79 3 1 141 1 145 3.60e-29 108
MsG0180001058.01.T01 MTR_7g075870 40.411 146 81 3 1 141 1 145 3.68e-29 107
MsG0180001058.01.T01 MTR_6g015975 42.759 145 78 2 1 141 1 144 7.82e-29 107
MsG0180001058.01.T01 MTR_4g109810 42.361 144 79 2 1 141 1 143 9.42e-29 107
MsG0180001058.01.T01 MTR_7g075870 39.726 146 81 3 1 141 1 144 1.89e-28 105
MsG0180001058.01.T01 MTR_8g033220 38.514 148 81 3 1 141 1 145 5.12e-27 102
MsG0180001058.01.T01 MTR_8g033220 38.514 148 81 3 1 141 1 145 6.17e-27 102
MsG0180001058.01.T01 MTR_4g102530 41.497 147 77 4 1 141 1 144 9.37e-27 101
MsG0180001058.01.T01 MTR_1g101970 40.000 150 82 3 1 144 1 148 1.20e-26 100
MsG0180001058.01.T01 MTR_2g009890 40.559 143 79 3 1 139 1 141 1.28e-26 102
MsG0180001058.01.T01 MTR_5g046870 52.174 92 39 2 1 92 1 87 2.40e-26 97.4
MsG0180001058.01.T01 MTR_1g053070 40.127 157 69 4 1 141 1 148 9.52e-26 99.8
MsG0180001058.01.T01 MTR_5g066180 41.606 137 71 3 1 132 1 133 2.59e-25 98.2
MsG0180001058.01.T01 MTR_5g032150 36.264 182 101 5 1 170 1 179 1.37e-24 96.3
MsG0180001058.01.T01 MTR_5g031000 35.099 151 79 3 1 141 1 142 3.10e-24 95.1
MsG0180001058.01.T01 MTR_5g032520 35.714 182 102 5 1 170 1 179 3.67e-24 95.1
MsG0180001058.01.T01 MTR_5g031000 35.099 151 79 3 1 141 1 142 4.90e-24 95.1
MsG0180001058.01.T01 MTR_0003s0590 57.333 75 30 1 1 75 1 73 4.60e-23 92.8
MsG0180001058.01.T01 MTR_2g461710 62.712 59 22 0 1 59 1 59 1.44e-22 86.3
MsG0180001058.01.T01 MTR_4g093970 37.324 142 80 3 1 135 27 166 1.86e-22 90.9
MsG0180001058.01.T01 MTR_4g036050 33.566 143 88 2 1 137 1 142 7.24e-22 87.8
MsG0180001058.01.T01 MTR_4g036050 32.877 146 91 2 1 140 1 145 9.10e-22 87.8
MsG0180001058.01.T01 MTR_4g036050 33.566 143 88 2 1 137 1 142 1.06e-21 87.8
MsG0180001058.01.T01 MTR_4g036050 33.566 143 88 2 1 137 1 142 1.58e-21 87.4
MsG0180001058.01.T01 MTR_4g093030 57.627 59 25 0 1 59 1 59 2.74e-19 80.5
MsG0180001058.01.T01 MTR_5g066960 55.932 59 26 0 1 59 1 59 8.68e-19 76.6
MsG0180001058.01.T01 MTR_4g084740 52.113 71 33 1 1 71 1 70 3.14e-18 80.9
MsG0180001058.01.T01 MTR_5g045560 35.484 155 70 5 1 130 8 157 4.47e-18 79.3
MsG0180001058.01.T01 MTR_8g086290 48.438 64 33 0 2 65 12 75 5.46e-18 77.8
MsG0180001058.01.T01 MTR_3g102570 42.157 102 57 2 1 101 1 101 6.27e-18 80.1
MsG0180001058.01.T01 MTR_3g030770 32.215 149 79 4 2 129 9 156 1.93e-17 77.4
MsG0180001058.01.T01 MTR_4g108720 38.462 104 64 0 1 104 1 104 2.25e-17 79.0
MsG0180001058.01.T01 MTR_3g052920 31.220 205 111 8 2 184 9 205 2.41e-17 77.0
MsG0180001058.01.T01 MTR_1g108510 32.215 149 79 4 2 129 9 156 2.95e-17 77.0
MsG0180001058.01.T01 MTR_2g105290 46.154 65 35 0 1 65 11 75 3.49e-17 75.5
MsG0180001058.01.T01 MTR_1g054265 39.241 79 46 1 1 79 1 77 1.74e-16 73.6
MsG0180001058.01.T01 MTR_4g094632 38.261 115 63 3 1 111 1 111 2.38e-16 72.8
MsG0180001058.01.T01 MTR_1g108580 32.215 149 79 4 2 129 9 156 2.76e-16 74.3
MsG0180001058.01.T01 MTR_1g012570 35.135 148 76 5 2 129 9 156 3.50e-16 73.9
MsG0180001058.01.T01 MTR_4g094638 55.000 60 27 0 1 60 1 60 3.90e-16 72.8
MsG0180001058.01.T01 MTR_0121s0080 28.922 204 111 8 2 180 7 201 4.33e-16 73.9
MsG0180001058.01.T01 MTR_8g079502 41.538 65 38 0 1 65 1 65 5.10e-16 72.4
MsG0180001058.01.T01 MTR_8g043650 32.000 200 108 11 2 180 9 201 7.82e-16 73.2
MsG0180001058.01.T01 MTR_5g055100 32.000 200 108 8 2 180 9 201 8.40e-16 73.2
MsG0180001058.01.T01 MTR_5g041650 34.615 104 68 0 1 104 38 141 1.00e-15 74.3
MsG0180001058.01.T01 MTR_1g047550 41.538 65 38 0 1 65 1 65 1.11e-15 71.6
MsG0180001058.01.T01 MTR_1g077360 29.843 191 106 6 2 171 9 192 1.27e-15 72.8
MsG0180001058.01.T01 MTR_8g051580 45.161 62 34 0 1 62 1 62 1.61e-15 71.2
MsG0180001058.01.T01 MTR_2g085250 51.515 66 31 1 2 66 9 74 1.97e-15 72.0
MsG0180001058.01.T01 MTR_2g085280 51.515 66 31 1 2 66 9 74 1.99e-15 72.0
MsG0180001058.01.T01 MTR_2g030740 29.353 201 116 6 2 182 9 203 2.60e-15 71.6
MsG0180001058.01.T01 MTR_1g075600 50.000 66 32 1 2 66 9 74 2.62e-15 71.6
MsG0180001058.01.T01 MTR_1g063160 38.462 65 40 0 1 65 1 65 4.54e-15 70.1
MsG0180001058.01.T01 MTR_1g105910 48.485 66 33 1 2 66 9 74 4.65e-15 71.2
MsG0180001058.01.T01 MTR_3g052870 48.485 66 33 1 2 66 9 74 7.94e-15 70.1
MsG0180001058.01.T01 MTR_1g105920 48.485 66 33 1 2 66 9 74 8.69e-15 70.5
MsG0180001058.01.T01 MTR_5g053390 51.515 66 31 1 2 66 9 74 1.18e-14 70.1
MsG0180001058.01.T01 MTR_0121s0100 49.153 59 30 0 2 60 9 67 1.20e-14 67.8
MsG0180001058.01.T01 MTR_4g131030 38.462 65 40 0 1 65 1 65 1.69e-14 69.3
MsG0180001058.01.T01 MTR_1g106070 46.970 66 34 1 2 66 9 74 1.87e-14 68.6
MsG0180001058.01.T01 MTR_3g080940 31.298 131 79 4 1 124 8 134 3.33e-14 68.2
MsG0180001058.01.T01 MTR_8g046350 43.077 65 37 0 1 65 1 65 3.86e-14 67.0
MsG0180001058.01.T01 MTR_2g093190 44.286 70 37 1 2 71 9 76 5.46e-14 68.2
MsG0180001058.01.T01 MTR_6g018920 27.891 147 88 4 1 132 1 144 1.57e-13 67.8
MsG0180001058.01.T01 MTR_1g041615 32.710 107 61 3 13 117 17 114 2.23e-13 64.3
MsG0180001058.01.T01 MTR_7g028448 50.000 52 26 0 14 65 24 75 4.79e-13 64.3
MsG0180001058.01.T01 MTR_4g036915 50.000 52 26 0 14 65 24 75 4.79e-13 64.3
MsG0180001058.01.T01 MTR_3g031240 34.513 113 64 2 1 103 1 113 6.81e-13 64.3
MsG0180001058.01.T01 MTR_3g030780 43.939 66 36 1 2 66 9 74 1.38e-12 62.4
MsG0180001058.01.T01 MTR_1g114730 26.994 163 101 4 1 148 1 160 4.32e-12 63.9
MsG0180001058.01.T01 MTR_3g067875 52.941 51 24 0 11 61 1 51 8.03e-12 58.5
MsG0180001058.01.T01 MTR_6g005440 43.548 62 35 0 1 62 1 62 8.06e-12 62.8
MsG0180001058.01.T01 MTR_1g077390 30.323 155 87 4 1 138 1 151 4.33e-11 58.9
MsG0180001058.01.T01 MTR_7g062350 24.865 185 111 5 18 181 37 214 6.70e-11 59.7
MsG0180001058.01.T01 MTR_1g105905 45.614 57 30 1 11 66 1 57 8.61e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001058.01.T01 AT5G20240 50.769 195 81 3 1 180 1 195 1.39e-62 192
MsG0180001058.01.T01 AT5G20240 62.590 139 52 0 1 139 1 139 1.23e-60 186
MsG0180001058.01.T01 AT3G54340 44.604 139 77 0 1 139 1 139 5.52e-38 130
MsG0180001058.01.T01 AT3G58780 41.333 150 81 2 1 145 22 169 8.34e-34 120
MsG0180001058.01.T01 AT3G58780 41.333 150 81 2 1 145 16 163 9.66e-34 120
MsG0180001058.01.T01 AT2G42830 41.333 150 81 2 1 145 16 163 9.82e-34 120
MsG0180001058.01.T01 AT2G42830 41.333 150 81 2 1 145 16 163 9.98e-34 120
MsG0180001058.01.T01 AT5G23260 40.559 143 83 1 1 141 17 159 1.12e-33 120
MsG0180001058.01.T01 AT3G58780 42.361 144 76 2 1 139 16 157 1.71e-33 120
MsG0180001058.01.T01 AT5G23260 39.161 143 85 1 1 141 1 143 7.60e-33 117
MsG0180001058.01.T01 AT5G23260 39.716 141 83 1 1 139 1 141 1.41e-32 117
MsG0180001058.01.T01 AT5G13790 45.578 147 67 4 1 141 1 140 1.56e-32 117
MsG0180001058.01.T01 AT5G23260 39.716 141 83 1 1 139 17 157 2.52e-32 117
MsG0180001058.01.T01 AT3G58780 40.972 144 71 2 1 139 16 150 1.02e-31 115
MsG0180001058.01.T01 AT5G60910 45.205 146 74 3 1 141 1 145 1.18e-31 115
MsG0180001058.01.T01 AT1G26310 43.537 147 77 2 1 141 1 147 2.54e-31 114
MsG0180001058.01.T01 AT5G13790 44.444 144 70 3 1 141 1 137 3.24e-31 114
MsG0180001058.01.T01 AT3G02310 46.099 141 70 3 1 136 1 140 8.10e-31 111
MsG0180001058.01.T01 AT3G58780 36.416 173 82 2 1 145 16 188 8.17e-31 113
MsG0180001058.01.T01 AT3G02310 46.099 141 70 3 1 136 1 140 3.36e-30 111
MsG0180001058.01.T01 AT5G15800 44.521 146 75 3 1 141 1 145 3.99e-30 111
MsG0180001058.01.T01 AT1G24260 42.857 147 68 3 1 136 1 142 4.12e-30 111
MsG0180001058.01.T01 AT1G24260 42.568 148 68 3 1 136 1 143 4.65e-30 110
MsG0180001058.01.T01 AT5G15800 44.521 146 75 3 1 141 1 145 4.71e-30 111
MsG0180001058.01.T01 AT4G11880 42.282 149 73 4 1 141 1 144 5.45e-30 108
MsG0180001058.01.T01 AT4G11880 42.282 149 73 4 1 141 1 144 5.45e-30 108
MsG0180001058.01.T01 AT1G24260 42.568 148 68 3 1 136 1 143 6.24e-30 110
MsG0180001058.01.T01 AT4G11880 42.282 149 73 4 1 141 1 144 1.02e-29 109
MsG0180001058.01.T01 AT4G11880 42.282 149 73 4 1 141 1 144 1.02e-29 109
MsG0180001058.01.T01 AT4G09960 40.690 145 79 2 1 140 1 143 1.06e-29 109
MsG0180001058.01.T01 AT4G24540 42.667 150 79 4 1 145 1 148 1.08e-29 109
MsG0180001058.01.T01 AT4G09960 40.411 146 80 2 1 141 1 144 1.48e-29 109
MsG0180001058.01.T01 AT5G51870 39.189 148 80 3 1 141 1 145 1.53e-29 107
MsG0180001058.01.T01 AT4G09960 40.411 146 80 2 1 141 2 145 1.64e-29 108
MsG0180001058.01.T01 AT3G61120 42.857 147 79 2 1 144 1 145 2.23e-29 108
MsG0180001058.01.T01 AT4G09960 40.411 146 80 2 1 141 11 154 2.26e-29 108
MsG0180001058.01.T01 AT3G30260 38.776 147 82 4 1 141 1 145 2.77e-29 108
MsG0180001058.01.T01 AT2G45660 40.411 146 80 2 1 141 1 144 3.02e-29 106
MsG0180001058.01.T01 AT4G09960 40.411 146 80 2 1 141 27 170 3.02e-29 108
MsG0180001058.01.T01 AT5G51870 39.189 148 80 3 1 141 24 168 3.67e-29 107
MsG0180001058.01.T01 AT1G69120 41.781 146 79 3 1 141 1 145 3.74e-29 108
MsG0180001058.01.T01 AT1G69120 41.781 146 79 3 1 141 1 145 6.29e-29 108
MsG0180001058.01.T01 AT5G51870 38.514 148 81 3 1 141 1 145 1.71e-28 105
MsG0180001058.01.T01 AT2G45650 41.216 148 81 2 1 144 1 146 1.82e-28 107
MsG0180001058.01.T01 AT5G51870 38.514 148 81 3 1 141 1 145 2.36e-28 105
MsG0180001058.01.T01 AT2G45660 40.411 146 80 2 1 141 1 144 2.57e-28 105
MsG0180001058.01.T01 AT5G51870 38.514 148 81 3 1 141 11 155 3.68e-28 105
MsG0180001058.01.T01 AT4G09960 40.411 146 80 2 1 141 96 239 4.12e-28 107
MsG0180001058.01.T01 AT4G22950 40.816 147 77 3 1 141 1 143 4.35e-28 103
MsG0180001058.01.T01 AT4G22950 40.816 147 77 3 1 141 1 143 1.51e-27 103
MsG0180001058.01.T01 AT4G22950 40.816 147 77 3 1 141 1 143 1.51e-27 103
MsG0180001058.01.T01 AT3G57390 37.013 154 81 4 1 141 1 151 2.64e-27 103
MsG0180001058.01.T01 AT3G57230 38.095 147 77 3 1 139 1 141 2.71e-27 100
MsG0180001058.01.T01 AT4G18960 39.860 143 79 2 2 139 18 158 2.93e-27 103
MsG0180001058.01.T01 AT3G57390 37.013 154 81 4 1 141 1 151 5.58e-27 103
MsG0180001058.01.T01 AT3G57230 36.842 152 76 3 1 141 1 143 1.67e-26 101
MsG0180001058.01.T01 AT3G57230 36.842 152 76 3 1 141 1 143 1.67e-26 101
MsG0180001058.01.T01 AT2G03710 37.589 141 84 2 1 137 1 141 6.83e-26 98.6
MsG0180001058.01.T01 AT2G03710 37.589 141 84 2 1 137 1 141 1.78e-25 99.4
MsG0180001058.01.T01 AT2G03710 37.589 141 84 2 1 137 1 141 1.88e-25 99.4
MsG0180001058.01.T01 AT4G37940 32.275 189 90 5 1 178 1 162 3.52e-25 96.3
MsG0180001058.01.T01 AT5G62165 38.514 148 80 4 1 141 1 144 5.37e-25 95.5
MsG0180001058.01.T01 AT5G62165 38.514 148 80 4 1 141 1 144 5.37e-25 95.5
MsG0180001058.01.T01 AT5G62165 38.514 148 80 4 1 141 1 144 5.37e-25 95.5
MsG0180001058.01.T01 AT5G51860 36.620 142 82 2 1 136 1 140 5.56e-25 96.7
MsG0180001058.01.T01 AT5G51860 36.620 142 82 2 1 136 1 140 6.21e-25 96.7
MsG0180001058.01.T01 AT2G14210 38.816 152 74 3 1 141 1 144 6.28e-25 97.4
MsG0180001058.01.T01 AT2G14210 38.816 152 74 3 1 141 1 144 6.62e-25 97.4
MsG0180001058.01.T01 AT5G62165 38.255 149 81 4 1 142 1 145 1.87e-24 95.1
MsG0180001058.01.T01 AT5G62165 38.255 149 81 4 1 142 1 145 1.87e-24 95.1
MsG0180001058.01.T01 AT5G62165 39.726 146 77 5 1 139 1 142 2.50e-24 93.6
MsG0180001058.01.T01 AT5G62165 39.726 146 77 5 1 139 1 142 2.50e-24 93.6
MsG0180001058.01.T01 AT5G62165 39.726 146 77 5 1 139 1 142 2.50e-24 93.6
MsG0180001058.01.T01 AT5G62165 39.726 146 77 5 1 139 1 142 2.50e-24 93.6
MsG0180001058.01.T01 AT5G62165 39.726 146 77 5 1 139 1 142 2.50e-24 93.6
MsG0180001058.01.T01 AT4G37940 34.868 152 79 3 1 141 1 143 3.61e-24 95.1
MsG0180001058.01.T01 AT5G62165 38.514 148 80 4 1 141 1 144 4.20e-24 94.4
MsG0180001058.01.T01 AT5G62165 38.514 148 80 4 1 141 1 144 4.20e-24 94.4
MsG0180001058.01.T01 AT5G62165 38.514 148 80 4 1 141 1 144 4.20e-24 94.4
MsG0180001058.01.T01 AT2G22630 37.333 150 78 2 1 141 1 143 4.95e-24 94.7
MsG0180001058.01.T01 AT2G22630 37.333 150 78 2 1 141 1 143 4.95e-24 94.7
MsG0180001058.01.T01 AT4G37940 35.374 147 75 3 1 136 1 138 1.41e-23 93.2
MsG0180001058.01.T01 AT2G22540 37.589 141 79 3 1 135 1 138 2.83e-23 93.2
MsG0180001058.01.T01 AT2G22540 37.589 141 79 3 1 135 1 138 2.83e-23 93.2
MsG0180001058.01.T01 AT5G10140 36.170 141 86 2 1 141 1 137 6.54e-23 90.1
MsG0180001058.01.T01 AT5G10140 36.170 141 86 2 1 141 1 137 1.22e-22 90.1
MsG0180001058.01.T01 AT5G10140 36.170 141 86 2 1 141 1 137 1.26e-22 90.1
MsG0180001058.01.T01 AT5G10140 36.170 141 86 2 1 141 1 137 1.35e-22 90.1
MsG0180001058.01.T01 AT5G62165 54.795 73 31 1 1 73 1 71 3.17e-22 86.7
MsG0180001058.01.T01 AT1G71692 50.000 76 37 1 1 76 1 75 3.72e-22 89.4
MsG0180001058.01.T01 AT1G31140 33.793 145 92 2 1 141 1 145 1.07e-20 85.9
MsG0180001058.01.T01 AT1G31140 35.135 148 88 2 1 141 1 147 1.39e-20 85.5
MsG0180001058.01.T01 AT5G65060 34.028 144 91 2 1 144 1 140 3.82e-20 84.0
MsG0180001058.01.T01 AT2G22540 35.461 141 77 3 1 135 1 133 4.04e-20 84.7
MsG0180001058.01.T01 AT5G65060 34.028 144 91 2 1 144 1 140 4.47e-20 83.6
MsG0180001058.01.T01 AT5G65050 27.660 188 112 4 1 172 1 180 4.44e-18 78.2
MsG0180001058.01.T01 AT1G18750 36.893 103 65 0 1 103 1 103 4.75e-18 80.9
MsG0180001058.01.T01 AT1G18750 36.893 103 65 0 1 103 1 103 4.94e-18 81.3
MsG0180001058.01.T01 AT1G18750 36.893 103 65 0 1 103 1 103 5.41e-18 80.9
MsG0180001058.01.T01 AT1G77980 49.296 71 35 1 1 71 1 70 6.61e-18 80.1
MsG0180001058.01.T01 AT1G22130 49.296 71 35 1 1 71 1 70 1.37e-17 79.3
MsG0180001058.01.T01 AT5G65070 43.056 72 40 1 1 72 1 71 1.39e-17 75.9
MsG0180001058.01.T01 AT5G65050 32.051 156 78 4 1 144 1 140 1.42e-17 76.6
MsG0180001058.01.T01 AT5G65050 31.034 145 96 2 1 145 1 141 1.72e-17 77.0
MsG0180001058.01.T01 AT2G03060 34.951 103 67 0 1 103 1 103 2.40e-17 79.0
MsG0180001058.01.T01 AT2G03060 34.951 103 67 0 1 103 1 103 2.61e-17 79.0
MsG0180001058.01.T01 AT2G03060 34.951 103 67 0 1 103 1 103 2.61e-17 79.0
MsG0180001058.01.T01 AT2G03060 34.951 103 67 0 1 103 1 103 2.61e-17 79.0
MsG0180001058.01.T01 AT5G65070 43.056 72 40 1 1 72 1 71 4.03e-17 75.9
MsG0180001058.01.T01 AT5G65080 30.822 146 93 3 1 144 8 147 4.74e-17 75.5
MsG0180001058.01.T01 AT1G77950 49.296 71 35 1 1 71 1 70 5.42e-17 76.6
MsG0180001058.01.T01 AT1G77950 49.296 71 35 1 1 71 1 70 5.42e-17 76.6
MsG0180001058.01.T01 AT1G77950 49.296 71 35 1 1 71 1 70 5.42e-17 76.6
MsG0180001058.01.T01 AT1G77950 49.296 71 35 1 1 71 1 70 5.42e-17 76.6
MsG0180001058.01.T01 AT5G65070 43.056 72 40 1 1 72 1 71 8.32e-17 75.9
MsG0180001058.01.T01 AT5G65070 43.056 72 40 1 1 72 1 71 1.01e-16 75.1
MsG0180001058.01.T01 AT5G65080 29.677 155 82 3 1 144 8 146 1.44e-16 74.7
MsG0180001058.01.T01 AT5G65060 33.333 144 81 4 1 144 1 129 1.79e-16 73.9
MsG0180001058.01.T01 AT1G01530 47.761 67 34 1 1 66 6 72 4.50e-16 73.9
MsG0180001058.01.T01 AT5G65050 41.667 72 41 1 1 72 1 71 5.65e-16 72.4
MsG0180001058.01.T01 AT1G47760 37.624 101 57 2 1 101 1 95 8.97e-16 72.0
MsG0180001058.01.T01 AT5G65070 47.458 59 31 0 1 59 1 59 1.16e-15 72.8
MsG0180001058.01.T01 AT1G77080 34.247 146 88 3 1 144 1 140 1.53e-15 71.2
MsG0180001058.01.T01 AT1G77080 34.247 146 88 3 1 144 1 140 2.21e-15 71.2
MsG0180001058.01.T01 AT1G65360 45.588 68 34 1 1 68 6 70 2.27e-15 71.6
MsG0180001058.01.T01 AT1G77080 34.247 146 88 3 1 144 1 140 2.31e-15 70.9
MsG0180001058.01.T01 AT1G77080 34.722 144 86 2 1 144 1 136 3.94e-15 69.3
MsG0180001058.01.T01 AT4G37435 37.931 116 58 5 1 108 1 110 4.54e-15 70.1
MsG0180001058.01.T01 AT1G69540 35.922 103 65 1 1 103 1 102 7.53e-15 72.0
MsG0180001058.01.T01 AT1G69540 35.922 103 65 1 1 103 1 102 7.77e-15 71.6
MsG0180001058.01.T01 AT1G77080 34.722 144 86 2 1 144 1 136 8.01e-15 69.7
MsG0180001058.01.T01 AT2G34440 39.726 73 42 1 1 73 1 71 1.61e-14 68.6
MsG0180001058.01.T01 AT4G36590 44.286 70 37 1 2 71 7 74 1.13e-13 67.4
MsG0180001058.01.T01 AT5G60440 37.931 87 50 2 2 88 7 89 1.90e-13 67.4
MsG0180001058.01.T01 AT3G66656 37.500 72 43 1 1 72 1 70 2.01e-13 65.5
MsG0180001058.01.T01 AT3G04100 33.621 116 69 3 2 109 14 129 2.34e-13 65.9
MsG0180001058.01.T01 AT2G24840 42.254 71 39 1 1 71 62 130 2.65e-13 66.6
MsG0180001058.01.T01 AT1G77080 30.178 169 91 4 1 144 1 167 1.76e-12 63.9
MsG0180001058.01.T01 AT2G26320 39.437 71 43 0 1 71 17 87 3.96e-12 60.5
MsG0180001058.01.T01 AT1G72350 50.000 56 28 0 2 57 43 98 9.72e-12 62.0

Find 31 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATCATCTTTGCTCCTTC+TGG 0.286754 1:-15338837 MsG0180001058.01.T01:CDS
AAGAATAATTACGTGGTAGA+AGG 0.329612 1:+15338792 None:intergenic
AAGCATCTGGAAAGAGGCTT+TGG 0.351747 1:-15338632 MsG0180001058.01.T01:CDS
GGCTGAACACGAAAGGAAAA+TGG 0.369681 1:+15337458 None:intergenic
CACGAAAGGAAAATGGCATC+TGG 0.379047 1:+15337465 None:intergenic
TTAACCTTATACCTCATGTT+TGG 0.379567 1:+15338605 None:intergenic
ATTAAGGTTGATTGATATGC+TGG 0.409544 1:-15338667 MsG0180001058.01.T01:intron
CATAAATTTCAGGCACTTGA+AGG 0.416312 1:-15338308 MsG0180001058.01.T01:intron
AGCATCTGGAAAGAGGCTTT+GGG 0.457669 1:-15338631 MsG0180001058.01.T01:CDS
AATTGCCTACCTGTTTGTTA+CGG 0.458958 1:+15338209 None:intergenic
GAGGTAAGATTGAGATCAAG+AGG 0.465455 1:-15338962 MsG0180001058.01.T01:CDS
CCTCACTATCCGTAACAAAC+AGG 0.469974 1:-15338218 MsG0180001058.01.T01:intron
AGTGGAAGGTGGGAGAGAAA+TGG 0.475072 1:-15337534 MsG0180001058.01.T01:CDS
CAAGAAGTTGATGAGCTTCG+AGG 0.480547 1:-15338260 MsG0180001058.01.T01:CDS
AAGGATTGAGATATGGGGAG+AGG 0.503146 1:-15338981 None:intergenic
AGAAGGAGCAAAGATGATAG+TGG 0.515974 1:+15338839 None:intergenic
CAACGTATGGCAGTGGAAGG+TGG 0.530390 1:-15337545 MsG0180001058.01.T01:CDS
AGAATAATTACGTGGTAGAA+GGG 0.550111 1:+15338793 None:intergenic
CAAGAAAGAGAATGAGGACA+TGG 0.551639 1:-15338415 MsG0180001058.01.T01:CDS
AACGTATGGCAGTGGAAGGT+GGG 0.551647 1:-15337544 MsG0180001058.01.T01:CDS
ATAAATTTCAGGCACTTGAA+GGG 0.553185 1:-15338307 MsG0180001058.01.T01:intron
GAAACTCAAGAAAGAGAATG+AGG 0.565377 1:-15338421 MsG0180001058.01.T01:CDS
AGGACATGGAAATTGAGCTC+AGG 0.575360 1:-15338401 MsG0180001058.01.T01:intron
AGTAGTGAGTGAAGCTGCAT+AGG 0.580197 1:+15337437 None:intergenic
ACGAAAGGAAAATGGCATCT+GGG 0.585200 1:+15337466 None:intergenic
GCAGCAACAACGTATGGCAG+TGG 0.588601 1:-15337552 MsG0180001058.01.T01:CDS
CTGCATAGGCTGAACACGAA+AGG 0.591967 1:+15337451 None:intergenic
CCTGTTTGTTACGGATAGTG+AGG 0.610217 1:+15338218 None:intergenic
CAACAACGTATGGCAGTGGA+AGG 0.619653 1:-15337548 MsG0180001058.01.T01:CDS
GATGAATTTGATGAGAGTAG+CGG 0.646695 1:-15337503 MsG0180001058.01.T01:CDS
GCTTTGGGATGCCAAACATG+AGG 0.693901 1:-15338616 MsG0180001058.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATTTCATGATTTA+TGG - Chr1:15337645-15337664 MsG0180001058.01.T01:intron 10.0%
!! GCTAATTTATTGAATTTAAA+AGG - Chr1:15338232-15338251 MsG0180001058.01.T01:CDS 15.0%
!!! ACATTAGTCATATTTTTTTT+TGG - Chr1:15338707-15338726 MsG0180001058.01.T01:intron 15.0%
!!! ATTTTTGAACATTTTTTTGT+TGG - Chr1:15337699-15337718 MsG0180001058.01.T01:intron 15.0%
!!! GGCTTATTTAATTTATAATA+AGG + Chr1:15338041-15338060 None:intergenic 15.0%
!! AATAGAACAAGTTAGTAATT+AGG + Chr1:15338603-15338622 None:intergenic 20.0%
!! ATTAATGTTATGTTGAACTA+TGG - Chr1:15337924-15337943 MsG0180001058.01.T01:intron 20.0%
!! TATTAGCCAACTATATATAA+TGG + Chr1:15338068-15338087 None:intergenic 20.0%
!! TCTAATTAAATATGCAATTC+TGG - Chr1:15338568-15338587 MsG0180001058.01.T01:intron 20.0%
!!! CTTTTGTCTCTTTTTTTTAA+AGG + Chr1:15337879-15337898 None:intergenic 20.0%
!!! TGTATATTCAAATGTTTTTG+TGG - Chr1:15338803-15338822 MsG0180001058.01.T01:intron 20.0%
! AATTAGCAATGTAGTTAGTT+TGG + Chr1:15338219-15338238 None:intergenic 25.0%
! ACATATTCAAAGAGAAAAAG+TGG - Chr1:15337484-15337503 MsG0180001058.01.T01:CDS 25.0%
! ATTAGAGCTAATCTTGTAAA+AGG + Chr1:15338554-15338573 None:intergenic 25.0%
! CATATTCAAAGAGAAAAAGT+GGG - Chr1:15337485-15337504 MsG0180001058.01.T01:CDS 25.0%
! CCATTTCCATTATATATAGT+TGG - Chr1:15338059-15338078 MsG0180001058.01.T01:intron 25.0%
! TTGAAAAAAATCAACCAATC+AGG + Chr1:15338261-15338280 None:intergenic 25.0%
! TTGGCTAATACATAAATTTC+AGG - Chr1:15338078-15338097 MsG0180001058.01.T01:intron 25.0%
!! CCAACTATATATAATGGAAA+TGG + Chr1:15338062-15338081 None:intergenic 25.0%
!! TTTTGTTGGTCATGAAATTA+AGG - Chr1:15337713-15337732 MsG0180001058.01.T01:intron 25.0%
AAGAATAATTACGTGGTAGA+AGG + Chr1:15337607-15337626 None:intergenic 30.0%
AATTTAAAAGGCTACCTGAT+TGG - Chr1:15338244-15338263 MsG0180001058.01.T01:CDS 30.0%
ACTCAAGAAGAATAATTACG+TGG + Chr1:15337614-15337633 None:intergenic 30.0%
AGAATAATTACGTGGTAGAA+GGG + Chr1:15337606-15337625 None:intergenic 30.0%
ATAAATTTCAGGCACTTGAA+GGG - Chr1:15338089-15338108 MsG0180001058.01.T01:intron 30.0%
GAATAATCGTGTAACTCTAA+GGG - Chr1:15338320-15338339 MsG0180001058.01.T01:intron 30.0%
TCTGGTATTTACATTCACTT+CGG + Chr1:15338411-15338430 None:intergenic 30.0%
TGAATAATCGTGTAACTCTA+AGG - Chr1:15338319-15338338 MsG0180001058.01.T01:intron 30.0%
TTAACCTTATACCTCATGTT+TGG + Chr1:15337794-15337813 None:intergenic 30.0%
! AAGAGACAAAAGTGTGTTAT+AGG - Chr1:15337887-15337906 MsG0180001058.01.T01:intron 30.0%
! AGAGACAAAAGTGTGTTATA+GGG - Chr1:15337888-15337907 MsG0180001058.01.T01:intron 30.0%
! ATTAAGGTTGATTGATATGC+TGG - Chr1:15337729-15337748 MsG0180001058.01.T01:intron 30.0%
! TATTCATGCATTTTTCCAGA+AGG + Chr1:15337577-15337596 None:intergenic 30.0%
!! ACTTTTGTATTTGTTGCAGA+TGG - Chr1:15338455-15338474 MsG0180001058.01.T01:intron 30.0%
!!! TTCGAGGATGTTTTAGAAAA+TGG - Chr1:15338152-15338171 MsG0180001058.01.T01:intron 30.0%
!!! TTTCCTTTTTTGAGAGTTTC+TGG - Chr1:15337842-15337861 MsG0180001058.01.T01:intron 30.0%
AAGCCAGAAACTCTCAAAAA+AGG + Chr1:15337848-15337867 None:intergenic 35.0%
ATACATTTCTCTTGACCATC+TGG + Chr1:15338488-15338507 None:intergenic 35.0%
ATTAGATGCATTCACTGATC+TGG + Chr1:15338429-15338448 None:intergenic 35.0%
CATAAATTTCAGGCACTTGA+AGG - Chr1:15338088-15338107 MsG0180001058.01.T01:intron 35.0%
GAAACTCAAGAAAGAGAATG+AGG - Chr1:15337975-15337994 MsG0180001058.01.T01:intron 35.0%
GATGAATTTGATGAGAGTAG+CGG - Chr1:15338893-15338912 MsG0180001058.01.T01:CDS 35.0%
GGTCAAGAGAAATGTATGTT+TGG - Chr1:15338491-15338510 MsG0180001058.01.T01:intron 35.0%
TGCTTATTAGGACAAGATCT+TGG - Chr1:15338636-15338655 MsG0180001058.01.T01:CDS 35.0%
TGTTATGTTGAACTATGGTC+TGG - Chr1:15337929-15337948 MsG0180001058.01.T01:intron 35.0%
TTATTAGGACAAGATCTTGG+AGG - Chr1:15338639-15338658 MsG0180001058.01.T01:CDS 35.0%
TTGCGCACATATTGCTTATT+AGG - Chr1:15338624-15338643 MsG0180001058.01.T01:CDS 35.0%
! AATTGCCTACCTGTTTGTTA+CGG + Chr1:15338190-15338209 None:intergenic 35.0%
! GGAACTTAATTTTATCCTCC+AGG - Chr1:15338672-15338691 MsG0180001058.01.T01:intron 35.0%
ACGAAAGGAAAATGGCATCT+GGG + Chr1:15338933-15338952 None:intergenic 40.0%
ACTATCATCTTTGCTCCTTC+TGG - Chr1:15337559-15337578 MsG0180001058.01.T01:intron 40.0%
ACTATCCGTAACAAACAGGT+AGG - Chr1:15338182-15338201 MsG0180001058.01.T01:intron 40.0%
AGAAGGAGCAAAGATGATAG+TGG + Chr1:15337560-15337579 None:intergenic 40.0%
CAAGAAAGAGAATGAGGACA+TGG - Chr1:15337981-15338000 MsG0180001058.01.T01:intron 40.0%
GAGGTAAGATTGAGATCAAG+AGG - Chr1:15337434-15337453 MsG0180001058.01.T01:CDS 40.0%
GATGCCAAACATGAGGTATA+AGG - Chr1:15337787-15337806 MsG0180001058.01.T01:intron 40.0%
TAATGTCTCAAAGCTGTACC+TGG + Chr1:15338693-15338712 None:intergenic 40.0%
! TTTTCAGCAGCAACAACGTA+TGG - Chr1:15338838-15338857 MsG0180001058.01.T01:CDS 40.0%
!! ACCAAAAAGCATCTGGAAAG+AGG - Chr1:15337758-15337777 MsG0180001058.01.T01:intron 40.0%
!! GAGAGATACCAAAAAGCATC+TGG - Chr1:15337751-15337770 MsG0180001058.01.T01:intron 40.0%
AAGCATCTGGAAAGAGGCTT+TGG - Chr1:15337764-15337783 MsG0180001058.01.T01:intron 45.0%
AGACAAGTCTCGAATCTGAG+AGG - Chr1:15338361-15338380 MsG0180001058.01.T01:intron 45.0%
AGATCTTGGAGGAGGAGAAT+AGG - Chr1:15338650-15338669 MsG0180001058.01.T01:CDS 45.0%
AGCATCTGGAAAGAGGCTTT+GGG - Chr1:15337765-15337784 MsG0180001058.01.T01:intron 45.0%
AGGACATGGAAATTGAGCTC+AGG - Chr1:15337995-15338014 MsG0180001058.01.T01:intron 45.0%
AGTAGTGAGTGAAGCTGCAT+AGG + Chr1:15338962-15338981 None:intergenic 45.0%
CACGAAAGGAAAATGGCATC+TGG + Chr1:15338934-15338953 None:intergenic 45.0%
CATGGAAATTGAGCTCAGGT+AGG - Chr1:15337999-15338018 MsG0180001058.01.T01:intron 45.0%
CCTCACTATCCGTAACAAAC+AGG - Chr1:15338178-15338197 MsG0180001058.01.T01:intron 45.0%
GATCTTGGAGGAGGAGAATA+GGG - Chr1:15338651-15338670 MsG0180001058.01.T01:CDS 45.0%
GGCTGAACACGAAAGGAAAA+TGG + Chr1:15338941-15338960 None:intergenic 45.0%
TTAGGACAAGATCTTGGAGG+AGG - Chr1:15338642-15338661 MsG0180001058.01.T01:CDS 45.0%
! ACATTCACTTCGGCTTTAGC+AGG + Chr1:15338401-15338420 None:intergenic 45.0%
! CATTCACTTCGGCTTTAGCA+GGG + Chr1:15338400-15338419 None:intergenic 45.0%
! CCTGTTTGTTACGGATAGTG+AGG + Chr1:15338181-15338200 None:intergenic 45.0%
! GCAGATGGAAGTATACCAGA+TGG - Chr1:15338470-15338489 MsG0180001058.01.T01:intron 45.0%
! GCCTCTTTCCAGATGCTTTT+TGG + Chr1:15337762-15337781 None:intergenic 45.0%
! TGTCTTTTTACCACGAGACC+AGG + Chr1:15338346-15338365 None:intergenic 45.0%
!! CAAGAAGTTGATGAGCTTCG+AGG - Chr1:15338136-15338155 MsG0180001058.01.T01:intron 45.0%
!! TATATATATATATATAATGT+TGG + Chr1:15338734-15338753 None:intergenic 5.0%
AACGTATGGCAGTGGAAGGT+GGG - Chr1:15338852-15338871 MsG0180001058.01.T01:CDS 50.0%
AGTGGAAGGTGGGAGAGAAA+TGG - Chr1:15338862-15338881 MsG0180001058.01.T01:CDS 50.0%
CAACAACGTATGGCAGTGGA+AGG - Chr1:15338848-15338867 MsG0180001058.01.T01:CDS 50.0%
CTGCATAGGCTGAACACGAA+AGG + Chr1:15338948-15338967 None:intergenic 50.0%
CTTTAGCAGGGCTTGAATCG+GGG + Chr1:15338388-15338407 None:intergenic 50.0%
GCTTTAGCAGGGCTTGAATC+GGG + Chr1:15338389-15338408 None:intergenic 50.0%
TGTCTCAAAGCTGTACCTGG+AGG + Chr1:15338690-15338709 None:intergenic 50.0%
! ATCGTGTAACTCTAAGGGCC+TGG - Chr1:15338325-15338344 MsG0180001058.01.T01:intron 50.0%
! GGCTTTAGCAGGGCTTGAAT+CGG + Chr1:15338390-15338409 None:intergenic 50.0%
!! GCTTTGGGATGCCAAACATG+AGG - Chr1:15337780-15337799 MsG0180001058.01.T01:intron 50.0%
CAACGTATGGCAGTGGAAGG+TGG - Chr1:15338851-15338870 MsG0180001058.01.T01:CDS 55.0%
GCAGCAACAACGTATGGCAG+TGG - Chr1:15338844-15338863 MsG0180001058.01.T01:CDS 55.0%
! ACTCTAAGGGCCTGGTCTCG+TGG - Chr1:15338333-15338352 MsG0180001058.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 15337427 15338991 15337427 ID=MsG0180001058.01;Name=MsG0180001058.01
Chr1 mRNA 15337427 15338991 15337427 ID=MsG0180001058.01.T01;Parent=MsG0180001058.01;Name=MsG0180001058.01.T01;_AED=0.35;_eAED=0.38;_QI=0|0|0|1|1|1|5|0|187
Chr1 exon 15338804 15338991 15338804 ID=MsG0180001058.01.T01:exon:30979;Parent=MsG0180001058.01.T01
Chr1 exon 15338617 15338683 15338617 ID=MsG0180001058.01.T01:exon:30978;Parent=MsG0180001058.01.T01
Chr1 exon 15338402 15338463 15338402 ID=MsG0180001058.01.T01:exon:30977;Parent=MsG0180001058.01.T01
Chr1 exon 15338219 15338318 15338219 ID=MsG0180001058.01.T01:exon:30976;Parent=MsG0180001058.01.T01
Chr1 exon 15337427 15337573 15337427 ID=MsG0180001058.01.T01:exon:30975;Parent=MsG0180001058.01.T01
Chr1 CDS 15338804 15338991 15338804 ID=MsG0180001058.01.T01:cds;Parent=MsG0180001058.01.T01
Chr1 CDS 15338617 15338683 15338617 ID=MsG0180001058.01.T01:cds;Parent=MsG0180001058.01.T01
Chr1 CDS 15338402 15338463 15338402 ID=MsG0180001058.01.T01:cds;Parent=MsG0180001058.01.T01
Chr1 CDS 15338219 15338318 15338219 ID=MsG0180001058.01.T01:cds;Parent=MsG0180001058.01.T01
Chr1 CDS 15337427 15337573 15337427 ID=MsG0180001058.01.T01:cds;Parent=MsG0180001058.01.T01
Gene Sequence

>MsG0180001058.01.T01

ATGGGGAGAGGTAAGATTGAGATCAAGAGGATTGAGAACTCAAGCAACAGACAAGTTACATATTCAAAGAGAAAAAGTGGGATTTTAAAGAAAGCTAACGAAATCAATGTTCTATGTGATGCTCAAGTTTCCACTATCATCTTTGCTCCTTCTGGAAAAATGCATGAATACATTAGCCCTTCTACCACGTTGATTGATATGCTGGAGAGATACCAAAAAGCATCTGGAAAGAGGCTTTGGGATGCCAAACATGAGAACTTACAGAATGAAATTGAGAAACTCAAGAAAGAGAATGAGGACATGGAAATTGAGCTCAGGCACTTGAAGGGAAAAGATATCGACACACTAAACTACAAGAAGTTGATGAGCTTCGAGGATGTTTTAGAAAATGGTCTCCTCACTATCCGTAACAAACAGCAGCAACAACGTATGGCAGTGGAAGGTGGGAGAGAAATGGATTATAATGATGAATTTGATGAGAGTAGCGGAAGTGATTTCAATTCCCAGATGCCATTTTCCTTTCGTGTTCAGCCTATGCAGCTTCACTCACTACTTCAGCTTTAA

Protein sequence

>MsG0180001058.01.T01

MGRGKIEIKRIENSSNRQVTYSKRKSGILKKANEINVLCDAQVSTIIFAPSGKMHEYISPSTTLIDMLERYQKASGKRLWDAKHENLQNEIEKLKKENEDMEIELRHLKGKDIDTLNYKKLMSFEDVLENGLLTIRNKQQQQRMAVEGGREMDYNDEFDESSGSDFNSQMPFSFRVQPMQLHSLLQL*