AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001296.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001296.01.T01 MTR_1g047060 54.545 99 36 3 112 210 3 92 2.39e-25 95.9
MsG0180001296.01.T01 MTR_4g094302 31.551 187 103 8 4 176 11 186 6.84e-19 82.0
MsG0180001296.01.T01 MTR_6g477900 32.704 159 85 7 4 148 6 156 3.13e-17 78.6
MsG0180001296.01.T01 MTR_1g008740 33.951 162 89 6 2 151 25 180 3.80e-17 80.1
MsG0180001296.01.T01 MTR_1g008740 33.951 162 89 6 2 151 11 166 4.66e-17 79.7
MsG0180001296.01.T01 MTR_5g012080 33.125 160 84 7 4 148 7 158 5.18e-17 79.3
MsG0180001296.01.T01 MTR_4g101680 33.333 159 83 6 4 148 7 156 1.64e-16 78.2
MsG0180001296.01.T01 MTR_1g096430 31.288 163 92 6 1 149 1 157 2.42e-16 77.4
MsG0180001296.01.T01 MTR_5g021710 31.410 156 90 5 4 148 8 157 4.48e-16 77.0
MsG0180001296.01.T01 MTR_4g094302 34.109 129 76 5 4 132 11 130 7.47e-16 73.2
MsG0180001296.01.T01 MTR_2g080010 31.707 164 91 5 4 161 15 163 9.14e-16 75.9
MsG0180001296.01.T01 MTR_5g041940 30.247 162 87 6 4 148 3 155 9.25e-16 74.7
MsG0180001296.01.T01 MTR_4g036030 33.333 159 83 7 4 148 7 156 1.14e-15 75.5
MsG0180001296.01.T01 MTR_8g076110 32.075 159 85 6 4 148 6 155 2.12e-15 74.7
MsG0180001296.01.T01 MTR_2g093810 31.481 162 87 6 4 148 14 168 3.75e-15 73.9
MsG0180001296.01.T01 MTR_3g109340 31.447 159 90 6 2 148 20 171 4.15e-15 73.9
MsG0180001296.01.T01 MTR_4g081870 30.247 162 87 7 4 148 9 161 8.16e-15 72.4
MsG0180001296.01.T01 MTR_4g089135 33.824 136 77 4 4 133 15 143 2.94e-14 71.6
MsG0180001296.01.T01 MTR_7g100990 34.815 135 75 5 4 132 11 138 3.89e-14 71.2
MsG0180001296.01.T01 MTR_8g059170 31.677 161 84 7 4 148 14 164 4.74e-14 70.9
MsG0180001296.01.T01 MTR_2g079990 31.447 159 85 7 4 148 16 164 1.10e-13 70.1
MsG0180001296.01.T01 MTR_3g093040 29.448 163 85 8 4 148 108 258 1.91e-13 68.9
MsG0180001296.01.T01 MTR_8g023900 28.931 159 94 6 2 148 10 161 2.05e-13 69.7
MsG0180001296.01.T01 MTR_8g023900 27.000 200 114 9 4 184 188 374 1.49e-11 63.9
MsG0180001296.01.T01 MTR_3g096140 30.435 161 88 6 3 148 6 157 2.38e-13 68.6
MsG0180001296.01.T01 MTR_3g109340 29.747 158 93 6 2 148 20 170 2.41e-13 68.9
MsG0180001296.01.T01 MTR_8g023930 28.846 156 96 5 2 148 22 171 4.62e-13 68.6
MsG0180001296.01.T01 MTR_6g084430 31.410 156 87 6 4 148 5 151 5.56e-13 67.8
MsG0180001296.01.T01 MTR_3g093050 28.834 163 92 7 1 148 19 172 5.95e-13 68.2
MsG0180001296.01.T01 MTR_3g096140 30.435 161 88 6 3 148 6 157 6.43e-13 67.8
MsG0180001296.01.T01 MTR_3g093050 28.834 163 92 7 1 148 19 172 8.01e-13 68.2
MsG0180001296.01.T01 MTR_8g023860 29.487 156 93 6 1 146 9 157 9.18e-13 67.4
MsG0180001296.01.T01 MTR_3g088110 29.814 161 87 6 4 148 7 157 9.69e-13 66.6
MsG0180001296.01.T01 MTR_5g069030 30.120 166 86 8 1 148 22 175 9.89e-13 67.8
MsG0180001296.01.T01 MTR_7g097090 32.468 154 84 8 4 146 10 154 1.18e-12 66.6
MsG0180001296.01.T01 MTR_8g023840 27.895 190 116 8 4 182 11 190 1.26e-12 67.0
MsG0180001296.01.T01 MTR_4g098630 27.500 200 120 10 4 188 6 195 1.34e-12 66.6
MsG0180001296.01.T01 MTR_3g116070 29.730 148 90 5 4 144 23 163 2.10e-12 66.2
MsG0180001296.01.T01 MTR_2g079990 33.813 139 75 6 4 135 16 144 2.26e-12 66.2
MsG0180001296.01.T01 MTR_2157s0010 26.961 204 107 10 4 175 8 201 2.42e-12 65.5
MsG0180001296.01.T01 MTR_8g467490 26.627 169 95 6 2 148 12 173 4.92e-12 65.5
MsG0180001296.01.T01 MTR_1g097300 32.593 135 74 5 6 132 21 146 1.16e-11 64.3
MsG0180001296.01.T01 MTR_4g075980 29.605 152 91 6 6 148 17 161 2.06e-11 63.2
MsG0180001296.01.T01 MTR_1g090720 31.707 164 86 6 4 148 42 198 4.58e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001296.01.T01 AT2G24430 35.849 159 83 6 2 148 14 165 6.69e-18 81.6
MsG0180001296.01.T01 AT2G24430 35.849 159 83 6 2 148 14 165 6.69e-18 81.6
MsG0180001296.01.T01 AT5G62380 33.540 161 80 7 4 148 7 156 1.94e-17 80.9
MsG0180001296.01.T01 AT5G62380 33.540 161 80 7 4 148 7 156 1.94e-17 80.9
MsG0180001296.01.T01 AT3G17730 32.075 159 86 8 4 148 6 156 2.99e-17 79.0
MsG0180001296.01.T01 AT4G36160 32.051 156 89 5 4 148 10 159 4.05e-17 80.1
MsG0180001296.01.T01 AT4G36160 32.051 156 89 5 4 148 10 159 4.05e-17 80.1
MsG0180001296.01.T01 AT1G71930 31.210 157 91 5 4 149 9 159 4.15e-17 79.7
MsG0180001296.01.T01 AT1G71930 31.210 157 91 5 4 149 9 159 4.15e-17 79.7
MsG0180001296.01.T01 AT4G36160 32.051 156 89 5 4 148 14 163 4.18e-17 80.1
MsG0180001296.01.T01 AT1G12260 35.849 159 79 8 4 148 7 156 4.39e-17 79.7
MsG0180001296.01.T01 AT1G12260 35.849 159 79 8 4 148 7 156 7.01e-17 79.3
MsG0180001296.01.T01 AT1G76420 32.500 160 83 6 4 148 22 171 1.27e-16 78.2
MsG0180001296.01.T01 AT2G18060 32.704 159 84 6 4 148 9 158 1.63e-16 78.2
MsG0180001296.01.T01 AT2G18060 32.704 159 84 6 4 148 9 158 1.63e-16 78.2
MsG0180001296.01.T01 AT1G62700 33.962 159 82 7 4 148 7 156 5.70e-16 77.0
MsG0180001296.01.T01 AT1G62700 33.962 159 82 7 4 148 7 156 5.70e-16 77.0
MsG0180001296.01.T01 AT3G10490 32.704 159 86 6 4 148 27 178 1.80e-15 73.9
MsG0180001296.01.T01 AT1G69490 30.247 162 87 6 4 148 9 161 2.34e-15 73.9
MsG0180001296.01.T01 AT4G27410 30.114 176 88 7 4 151 14 182 4.19e-15 73.9
MsG0180001296.01.T01 AT3G49530 29.091 165 90 9 1 148 10 164 6.88e-15 73.9
MsG0180001296.01.T01 AT5G39610 31.875 160 85 7 4 148 20 170 7.46e-15 72.8
MsG0180001296.01.T01 AT3G49530 29.091 165 90 9 1 148 10 164 7.98e-15 73.9
MsG0180001296.01.T01 AT5G46590 31.847 157 85 7 4 145 6 155 8.24e-15 72.8
MsG0180001296.01.T01 AT5G66300 30.625 160 87 7 4 148 12 162 9.28e-15 72.4
MsG0180001296.01.T01 AT1G54330 30.968 155 90 6 4 148 6 153 1.03e-14 72.4
MsG0180001296.01.T01 AT3G10490 32.704 159 86 6 4 148 27 178 1.43e-14 73.2
MsG0180001296.01.T01 AT3G10480 32.704 159 86 6 4 148 27 178 2.15e-14 72.4
MsG0180001296.01.T01 AT5G64530 29.897 194 102 7 4 176 3 183 2.48e-14 69.7
MsG0180001296.01.T01 AT1G26870 29.891 184 94 8 2 162 14 185 6.79e-14 70.9
MsG0180001296.01.T01 AT3G10480 32.278 158 87 6 4 148 27 177 7.04e-14 70.9
MsG0180001296.01.T01 AT2G02450 30.994 171 99 6 3 162 50 212 7.40e-14 70.9
MsG0180001296.01.T01 AT2G02450 30.994 171 99 6 3 162 50 212 8.13e-14 70.9
MsG0180001296.01.T01 AT3G18400 33.121 157 84 9 4 148 5 152 1.02e-13 69.7
MsG0180001296.01.T01 AT1G32510 29.697 165 92 7 3 148 5 164 1.40e-13 69.3
MsG0180001296.01.T01 AT4G10350 32.704 159 82 8 4 146 9 158 1.66e-13 69.3
MsG0180001296.01.T01 AT4G35580 30.303 165 89 9 1 149 6 160 2.09e-13 69.7
MsG0180001296.01.T01 AT4G35580 30.303 165 89 9 1 149 6 160 2.13e-13 69.7
MsG0180001296.01.T01 AT4G35580 30.303 165 89 9 1 149 6 160 2.34e-13 69.7
MsG0180001296.01.T01 AT3G29035 33.333 135 75 5 4 132 24 149 2.63e-13 68.6
MsG0180001296.01.T01 AT3G15510 29.747 158 90 5 10 161 23 165 3.27e-13 68.6
MsG0180001296.01.T01 AT5G04395 32.215 149 80 6 4 135 28 172 3.97e-13 66.2
MsG0180001296.01.T01 AT5G61430 31.288 163 88 7 4 151 16 169 4.10e-13 68.2
MsG0180001296.01.T01 AT3G15500 30.864 162 82 7 4 148 14 162 5.88e-13 67.8
MsG0180001296.01.T01 AT5G46590 31.655 139 81 6 4 135 6 137 7.88e-13 67.0
MsG0180001296.01.T01 AT1G52890 30.864 162 82 7 4 148 14 162 1.08e-12 67.0
MsG0180001296.01.T01 AT5G04410 29.375 160 89 6 4 148 9 159 1.29e-12 67.4
MsG0180001296.01.T01 AT5G50820 33.088 136 76 5 4 135 17 141 1.33e-12 65.1
MsG0180001296.01.T01 AT3G10500 31.013 158 89 6 4 148 9 159 1.50e-12 67.0
MsG0180001296.01.T01 AT5G64530 34.884 129 71 5 4 132 3 118 1.50e-12 63.9
MsG0180001296.01.T01 AT5G24590 29.630 162 87 8 4 148 13 164 2.61e-12 66.2
MsG0180001296.01.T01 AT5G07680 31.707 164 86 8 4 151 17 170 3.33e-12 65.5
MsG0180001296.01.T01 AT5G07680 31.707 164 86 8 4 151 3 156 3.60e-12 65.5
MsG0180001296.01.T01 AT3G04060 30.387 181 101 8 4 168 20 191 5.75e-12 65.1
MsG0180001296.01.T01 AT3G12977 28.571 175 101 7 4 163 18 183 6.37e-12 64.3
MsG0180001296.01.T01 AT5G18270 31.677 161 85 8 4 148 21 172 4.23e-11 62.4
MsG0180001296.01.T01 AT5G18270 31.677 161 85 8 4 148 21 172 4.65e-11 62.4

Find 60 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAGTTATGCTGCATTTC+TGG 0.105946 1:+18953693 MsG0180001296.01.T01:intron
TGGATTTGGACTCTGAATTT+AGG 0.147046 1:+18952655 MsG0180001296.01.T01:CDS
CCATGGTTCTGACCTGATTA+AGG 0.246294 1:+18952193 MsG0180001296.01.T01:CDS
CCTCCTCTGCTCATCAGTTT+TGG 0.253784 1:-18952306 None:intergenic
GAAGGAACTCAGCAACTTAA+AGG 0.268437 1:+18952738 MsG0180001296.01.T01:CDS
GGATTTGGACTCTGAATTTA+GGG 0.295087 1:+18952656 MsG0180001296.01.T01:CDS
CCTTGTGTGACGGAAGAAAA+AGG 0.332567 1:-18952264 None:intergenic
CCGCCCTAGAGGGATGGATT+TGG 0.366250 1:+18952641 MsG0180001296.01.T01:CDS
ATGACGCCAGAGCAAGCTTA+TGG 0.383229 1:+18953742 MsG0180001296.01.T01:CDS
GGCATTGTAAGACTGGATTC+TGG 0.399311 1:+18952327 MsG0180001296.01.T01:CDS
GATTTGCTTCCACCTGGTGC+TGG 0.403266 1:+18952098 MsG0180001296.01.T01:CDS
ACAAGTTCAGCTCCTTAATC+AGG 0.403441 1:-18952205 None:intergenic
TCTTGTGATGGTGCTGGTGC+TGG 0.408584 1:+18952774 MsG0180001296.01.T01:CDS
CTCAGCAACTTAAAGGGGCT+GGG 0.408676 1:+18952745 MsG0180001296.01.T01:CDS
AAGGAACTCAGCAACTTAAA+GGG 0.416136 1:+18952739 MsG0180001296.01.T01:CDS
GGCTACTCAAGCCACTCTTC+AGG 0.439395 1:+18952827 MsG0180001296.01.T01:CDS
AGGTGATGCATCGCGTTTCA+TGG 0.440573 1:+18952806 MsG0180001296.01.T01:CDS
AAAACACGACAAACAACAAA+AGG 0.448590 1:-18952615 None:intergenic
ACTCAGCAACTTAAAGGGGC+TGG 0.463888 1:+18952744 MsG0180001296.01.T01:CDS
GCAATTCAAATGGATCATAC+TGG 0.470518 1:-18952229 None:intergenic
TGAGCAAGATGCAATTCAAA+TGG 0.471704 1:-18952239 None:intergenic
CAGAGGAGGCATTGTAAGAC+TGG 0.471934 1:+18952320 MsG0180001296.01.T01:CDS
GCTGGTGCTGGTGCTGAGCA+AGG 0.476489 1:+18952786 MsG0180001296.01.T01:CDS
GCTAGTTCTTGTGATGGTGC+TGG 0.492919 1:+18952768 MsG0180001296.01.T01:CDS
GAGTCCAAATCCATCCCTCT+AGG 0.501503 1:-18952645 None:intergenic
GAAGATGTTCAGAATTTCCA+TGG 0.508550 1:+18952176 MsG0180001296.01.T01:CDS
TGGAGCTGATGACGTGTTGG+TGG 0.510033 1:+18952382 MsG0180001296.01.T01:CDS
CTTCCTCCATAAGCTTGCTC+TGG 0.518279 1:-18953748 None:intergenic
GCTGTCAAAGACATTACTGC+TGG 0.524827 1:+18952362 MsG0180001296.01.T01:CDS
AGAACGCGATCAAAACTAGT+TGG 0.526855 1:+18952447 MsG0180001296.01.T01:CDS
ACCTTCATCTACATCAGATA+AGG 0.530916 1:-18952679 None:intergenic
GCAATGGATTTGCTTCCACC+TGG 0.532019 1:+18952092 None:intergenic
TGGTGACGACTCTGATGATA+AGG 0.534949 1:+18952710 MsG0180001296.01.T01:CDS
TCTGATGATAAGGCGAATGA+AGG 0.545466 1:+18952720 MsG0180001296.01.T01:CDS
CACTCTTGTTAACAACCCTC+AGG 0.546751 1:+18952484 MsG0180001296.01.T01:CDS
GCCTTATCTGATGTAGATGA+AGG 0.551202 1:+18952678 MsG0180001296.01.T01:CDS
TCAGCAACTTAAAGGGGCTG+GGG 0.554378 1:+18952746 MsG0180001296.01.T01:CDS
TGCTGGAGCTGATGACGTGT+TGG 0.559512 1:+18952379 MsG0180001296.01.T01:CDS
GAAGGGACGAAGCCAGCACC+AGG 0.569334 1:-18952110 None:intergenic
GACTGGATTCTGGATGCAGA+AGG 0.580380 1:+18952337 MsG0180001296.01.T01:CDS
CCAAAACTGATGAGCAGAGG+AGG 0.581988 1:+18952306 MsG0180001296.01.T01:CDS
GCTGGGGCTAGTTCTTGTGA+TGG 0.582418 1:+18952762 MsG0180001296.01.T01:CDS
AGTCCAAATCCATCCCTCTA+GGG 0.585447 1:-18952644 None:intergenic
TGGCAAGGTAATAGCTAACA+AGG 0.592858 1:-18952142 None:intergenic
ACTGGATTCTGGATGCAGAA+GGG 0.607334 1:+18952338 MsG0180001296.01.T01:CDS
GGACTGTGTTGTGTCCCACA+TGG 0.610711 1:+18953714 MsG0180001296.01.T01:CDS
CTGGCGTCATAGCTTCCATG+TGG 0.622862 1:-18953729 None:intergenic
AGTAAAACTCCCTTGTGTGA+CGG 0.625240 1:-18952274 None:intergenic
CCTTAATCAGGTCAGAACCA+TGG 0.626777 1:-18952193 None:intergenic
GTAGATGAAGGTGATGCTGC+TGG 0.627007 1:+18952690 MsG0180001296.01.T01:CDS
AGGAACTCAGCAACTTAAAG+GGG 0.629259 1:+18952740 MsG0180001296.01.T01:CDS
TAACAAGGAGTTCATCAGAA+GGG 0.633655 1:-18952127 None:intergenic
AATATATGTTACCTGAAGAG+TGG 0.636803 1:-18952838 None:intergenic
GGGACGAAGCCAGCACCAGG+TGG 0.645386 1:-18952107 None:intergenic
GGAGCTGATGACGTGTTGGT+GGG 0.653652 1:+18952383 MsG0180001296.01.T01:CDS
CTGCCAAAACTGATGAGCAG+AGG 0.655541 1:+18952303 MsG0180001296.01.T01:CDS
ACGCCAGAGCAAGCTTATGG+AGG 0.659996 1:+18953745 MsG0180001296.01.T01:CDS
CTAACAAGGAGTTCATCAGA+AGG 0.667376 1:-18952128 None:intergenic
TGGCGTCATAGCTTCCATGT+GGG 0.676131 1:-18953728 None:intergenic
CCAAATCCATCCCTCTAGGG+CGG 0.685181 1:-18952641 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTAAAGAAAAATAAA+AGG - Chr1:18953536-18953555 None:intergenic 10.0%
!!! AATAATTTTTGATACAATTG+TGG - Chr1:18953270-18953289 None:intergenic 15.0%
!!! ATTTTTCTTTAAGTTTTTTG+TGG + Chr1:18953539-18953558 MsG0180001296.01.T01:intron 15.0%
!!! TTTTATATAAATAATTGTGC+AGG + Chr1:18952590-18952609 MsG0180001296.01.T01:intron 15.0%
!! AATTCAAAACCTTTATGTAT+TGG + Chr1:18953155-18953174 MsG0180001296.01.T01:intron 20.0%
!! ATATGTATTTCACTTTCTAT+TGG + Chr1:18952968-18952987 MsG0180001296.01.T01:intron 20.0%
!! TCGATGATTAATTAATGTAT+TGG + Chr1:18952551-18952570 MsG0180001296.01.T01:intron 20.0%
!!! CATCTTTTCATGTAATTTTA+TGG + Chr1:18953610-18953629 MsG0180001296.01.T01:intron 20.0%
!!! TACATAAAGGTTTTGAATTA+TGG - Chr1:18953154-18953173 None:intergenic 20.0%
!!! TTAATTTGTTACATGTTTTG+AGG - Chr1:18953472-18953491 None:intergenic 20.0%
!!! TTCGATATTTATTTTGTCAT+CGG + Chr1:18952873-18952892 MsG0180001296.01.T01:intron 20.0%
! AACTAAATTCATTCATGTGA+TGG + Chr1:18953359-18953378 MsG0180001296.01.T01:intron 25.0%
! CAAAATCTACCAATACATAA+AGG - Chr1:18953167-18953186 None:intergenic 25.0%
! CATGAAAATCATTGATATTG+TGG - Chr1:18953118-18953099 None:intergenic 25.0%
! TGGATGTAGAATTATGTAAT+TGG - Chr1:18953250-18953269 None:intergenic 25.0%
! TTAATTACGGAAGTCAATAT+TGG + Chr1:18953289-18953308 MsG0180001296.01.T01:intron 25.0%
!! AAATAAAAGGACATGTTTTG+AGG - Chr1:18953523-18953542 None:intergenic 25.0%
!! CTTTTCATGTAATTTTATGG+TGG + Chr1:18953613-18953632 MsG0180001296.01.T01:intron 25.0%
!! TCTCTCTTCTTTTTCTATAT+AGG + Chr1:18952413-18952432 MsG0180001296.01.T01:CDS 25.0%
!!! AACATCTTCATTGTTTTTGT+TGG - Chr1:18952165-18952184 None:intergenic 25.0%
!!! TTATGTATTGGTAGATTTTG+TGG + Chr1:18953167-18953186 MsG0180001296.01.T01:intron 25.0%
AAAACACGACAAACAACAAA+AGG - Chr1:18952618-18952637 None:intergenic 30.0%
AAAATACCTCCATCATATGT+GGG + Chr1:18953005-18953024 MsG0180001296.01.T01:intron 30.0%
AATATATGTTACCTGAAGAG+TGG - Chr1:18952841-18952860 None:intergenic 30.0%
CATAAATAATCCAAACGCAA+TGG - Chr1:18953216-18953235 None:intergenic 30.0%
TAAAATACCTCCATCATATG+TGG + Chr1:18953004-18953023 MsG0180001296.01.T01:intron 30.0%
TGTGAAATTCAATTGCAAAG+AGG - Chr1:18953340-18953359 None:intergenic 30.0%
AAGGAACTCAGCAACTTAAA+GGG + Chr1:18952739-18952758 MsG0180001296.01.T01:CDS 35.0%
ACCTTCATCTACATCAGATA+AGG - Chr1:18952682-18952701 None:intergenic 35.0%
AGAGGATCAACAACATTAAC+TGG - Chr1:18953322-18953341 None:intergenic 35.0%
GAAGATGTTCAGAATTTCCA+TGG + Chr1:18952176-18952195 MsG0180001296.01.T01:CDS 35.0%
GCAATTCAAATGGATCATAC+TGG - Chr1:18952232-18952251 None:intergenic 35.0%
GGATTTGGACTCTGAATTTA+GGG + Chr1:18952656-18952675 MsG0180001296.01.T01:CDS 35.0%
TAACAAGGAGTTCATCAGAA+GGG - Chr1:18952130-18952149 None:intergenic 35.0%
TATGACCAACGTTTACATCA+TGG + Chr1:18953055-18953074 MsG0180001296.01.T01:intron 35.0%
TGAGCAAGATGCAATTCAAA+TGG - Chr1:18952242-18952261 None:intergenic 35.0%
TGGATTTGGACTCTGAATTT+AGG + Chr1:18952655-18952674 MsG0180001296.01.T01:CDS 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG - Chr1:18952160-18952179 None:intergenic 35.0%
ACAAGTTCAGCTCCTTAATC+AGG - Chr1:18952208-18952227 None:intergenic 40.0%
AGAACGCGATCAAAACTAGT+TGG + Chr1:18952447-18952466 MsG0180001296.01.T01:CDS 40.0%
AGGAACTCAGCAACTTAAAG+GGG + Chr1:18952740-18952759 MsG0180001296.01.T01:CDS 40.0%
AGTAAAACTCCCTTGTGTGA+CGG - Chr1:18952277-18952296 None:intergenic 40.0%
ATATTGTGGCCCACATATGA+TGG - Chr1:18953017-18953036 None:intergenic 40.0%
ATCGATTGAATAACGAGCAC+AGG - Chr1:18952536-18952555 None:intergenic 40.0%
CTAACAAGGAGTTCATCAGA+AGG - Chr1:18952131-18952150 None:intergenic 40.0%
GAAGGAACTCAGCAACTTAA+AGG + Chr1:18952738-18952757 MsG0180001296.01.T01:CDS 40.0%
GATGAGTTATGCTGCATTTC+TGG + Chr1:18953693-18953712 MsG0180001296.01.T01:intron 40.0%
GCCTTATCTGATGTAGATGA+AGG + Chr1:18952678-18952697 MsG0180001296.01.T01:CDS 40.0%
TCGATTGAATAACGAGCACA+GGG - Chr1:18952535-18952554 None:intergenic 40.0%
TCTGATGATAAGGCGAATGA+AGG + Chr1:18952720-18952739 MsG0180001296.01.T01:CDS 40.0%
TGGCAAGGTAATAGCTAACA+AGG - Chr1:18952145-18952164 None:intergenic 40.0%
TGTGACCATGATGTAAACGT+TGG - Chr1:18953063-18953082 None:intergenic 40.0%
TTCCCAAATGACATACCTGA+GGG - Chr1:18952502-18952521 None:intergenic 40.0%
TTTCCCAAATGACATACCTG+AGG - Chr1:18952503-18952522 None:intergenic 40.0%
! AACCCTCAGGTATGTCATTT+GGG + Chr1:18952497-18952516 MsG0180001296.01.T01:intron 40.0%
! CTTTTTCTTCCGTCACACAA+GGG + Chr1:18952265-18952284 MsG0180001296.01.T01:CDS 40.0%
!!! AGGACATGTTTTGAGGAATC+TGG - Chr1:18953516-18953535 None:intergenic 40.0%
!!! TAGTTTTGATCGCGTTCTGA+GGG - Chr1:18952445-18952464 None:intergenic 40.0%
ACTGGATTCTGGATGCAGAA+GGG + Chr1:18952338-18952357 MsG0180001296.01.T01:CDS 45.0%
AGTCCAAATCCATCCCTCTA+GGG - Chr1:18952647-18952666 None:intergenic 45.0%
CAACCCTCAGGTATGTCATT+TGG + Chr1:18952496-18952515 MsG0180001296.01.T01:intron 45.0%
CACTCTTGTTAACAACCCTC+AGG + Chr1:18952484-18952503 MsG0180001296.01.T01:CDS 45.0%
CATCATGGTCACACTAACTG+TGG + Chr1:18953070-18953089 MsG0180001296.01.T01:intron 45.0%
CCAAACGCAATGGAGCTATT+TGG - Chr1:18953206-18953225 None:intergenic 45.0%
CCAAATAGCTCCATTGCGTT+TGG + Chr1:18953203-18953222 MsG0180001296.01.T01:intron 45.0%
CCTTAATCAGGTCAGAACCA+TGG - Chr1:18952196-18952215 None:intergenic 45.0%
GCTGTCAAAGACATTACTGC+TGG + Chr1:18952362-18952381 MsG0180001296.01.T01:CDS 45.0%
GGCATTGTAAGACTGGATTC+TGG + Chr1:18952327-18952346 MsG0180001296.01.T01:CDS 45.0%
! CCTTGTGTGACGGAAGAAAA+AGG - Chr1:18952267-18952286 None:intergenic 45.0%
! CCTTTTTCTTCCGTCACACA+AGG + Chr1:18952264-18952283 MsG0180001296.01.T01:CDS 45.0%
! TGGTGACGACTCTGATGATA+AGG + Chr1:18952710-18952729 MsG0180001296.01.T01:CDS 45.0%
!! AGTTTTGATCGCGTTCTGAG+GGG - Chr1:18952444-18952463 None:intergenic 45.0%
!! CCATGGTTCTGACCTGATTA+AGG + Chr1:18952193-18952212 MsG0180001296.01.T01:CDS 45.0%
!!! CTAGTTTTGATCGCGTTCTG+AGG - Chr1:18952446-18952465 None:intergenic 45.0%
!! TATCAAAAATTATTTAATTA+CGG + Chr1:18953276-18953295 MsG0180001296.01.T01:intron 5.0%
ACTCAGCAACTTAAAGGGGC+TGG + Chr1:18952744-18952763 MsG0180001296.01.T01:CDS 50.0%
AGGTGATGCATCGCGTTTCA+TGG + Chr1:18952806-18952825 MsG0180001296.01.T01:CDS 50.0%
ATGACGCCAGAGCAAGCTTA+TGG + Chr1:18953742-18953761 MsG0180001296.01.T01:CDS 50.0%
CCAAAACTGATGAGCAGAGG+AGG + Chr1:18952306-18952325 MsG0180001296.01.T01:CDS 50.0%
CTCAGCAACTTAAAGGGGCT+GGG + Chr1:18952745-18952764 MsG0180001296.01.T01:CDS 50.0%
CTGCCAAAACTGATGAGCAG+AGG + Chr1:18952303-18952322 MsG0180001296.01.T01:CDS 50.0%
GACTGGATTCTGGATGCAGA+AGG + Chr1:18952337-18952356 MsG0180001296.01.T01:CDS 50.0%
GAGTCCAAATCCATCCCTCT+AGG - Chr1:18952648-18952667 None:intergenic 50.0%
GTAGATGAAGGTGATGCTGC+TGG + Chr1:18952690-18952709 MsG0180001296.01.T01:CDS 50.0%
TCAGCAACTTAAAGGGGCTG+GGG + Chr1:18952746-18952765 MsG0180001296.01.T01:CDS 50.0%
TGGCGTCATAGCTTCCATGT+GGG - Chr1:18953731-18953750 None:intergenic 50.0%
TTGTGGCCCACATATGATGG+AGG - Chr1:18953014-18953033 None:intergenic 50.0%
! CCTCCTCTGCTCATCAGTTT+TGG - Chr1:18952309-18952328 None:intergenic 50.0%
! CTTCCTCCATAAGCTTGCTC+TGG - Chr1:18953751-18953770 None:intergenic 50.0%
! GCTAGTTCTTGTGATGGTGC+TGG + Chr1:18952768-18952787 MsG0180001296.01.T01:CDS 50.0%
!! CAGAGGAGGCATTGTAAGAC+TGG + Chr1:18952320-18952339 MsG0180001296.01.T01:CDS 50.0%
!! GTGTTTTTGACCGCCCTAGA+GGG + Chr1:18952631-18952650 MsG0180001296.01.T01:CDS 50.0%
ACGCCAGAGCAAGCTTATGG+AGG + Chr1:18953745-18953764 MsG0180001296.01.T01:CDS 55.0%
CTGGCGTCATAGCTTCCATG+TGG - Chr1:18953732-18953751 None:intergenic 55.0%
GGACTGTGTTGTGTCCCACA+TGG + Chr1:18953714-18953733 MsG0180001296.01.T01:CDS 55.0%
GGCTACTCAAGCCACTCTTC+AGG + Chr1:18952827-18952846 MsG0180001296.01.T01:CDS 55.0%
! CCAAATCCATCCCTCTAGGG+CGG - Chr1:18952644-18952663 None:intergenic 55.0%
! GATTTGCTTCCACCTGGTGC+TGG + Chr1:18952098-18952117 MsG0180001296.01.T01:CDS 55.0%
! GGAGCTGATGACGTGTTGGT+GGG + Chr1:18952383-18952402 MsG0180001296.01.T01:CDS 55.0%
! TGCTGGAGCTGATGACGTGT+TGG + Chr1:18952379-18952398 MsG0180001296.01.T01:CDS 55.0%
! TGGAGCTGATGACGTGTTGG+TGG + Chr1:18952382-18952401 MsG0180001296.01.T01:CDS 55.0%
! TTTTGACCGCCCTAGAGGGA+TGG + Chr1:18952635-18952654 MsG0180001296.01.T01:CDS 55.0%
!! CGTGTTTTTGACCGCCCTAG+AGG + Chr1:18952630-18952649 MsG0180001296.01.T01:CDS 55.0%
!! GCTGGGGCTAGTTCTTGTGA+TGG + Chr1:18952762-18952781 MsG0180001296.01.T01:CDS 55.0%
!! TCTTGTGATGGTGCTGGTGC+TGG + Chr1:18952774-18952793 MsG0180001296.01.T01:CDS 55.0%
! CCGCCCTAGAGGGATGGATT+TGG + Chr1:18952641-18952660 MsG0180001296.01.T01:CDS 60.0%
GAAGGGACGAAGCCAGCACC+AGG - Chr1:18952113-18952132 None:intergenic 65.0%
!! GCTGGTGCTGGTGCTGAGCA+AGG + Chr1:18952786-18952805 MsG0180001296.01.T01:CDS 65.0%
GGGACGAAGCCAGCACCAGG+TGG - Chr1:18952110-18952129 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 18952095 18953789 18952095 ID=MsG0180001296.01;Name=MsG0180001296.01
Chr1 mRNA 18952095 18953789 18952095 ID=MsG0180001296.01.T01;Parent=MsG0180001296.01;Name=MsG0180001296.01.T01;_AED=0.50;_eAED=0.68;_QI=0|0|0|1|1|1|3|0|247
Chr1 exon 18952095 18952505 18952095 ID=MsG0180001296.01.T01:exon:6346;Parent=MsG0180001296.01.T01
Chr1 exon 18952612 18952848 18952612 ID=MsG0180001296.01.T01:exon:6347;Parent=MsG0180001296.01.T01
Chr1 exon 18953694 18953789 18953694 ID=MsG0180001296.01.T01:exon:6348;Parent=MsG0180001296.01.T01
Chr1 CDS 18952095 18952505 18952095 ID=MsG0180001296.01.T01:cds;Parent=MsG0180001296.01.T01
Chr1 CDS 18952612 18952848 18952612 ID=MsG0180001296.01.T01:cds;Parent=MsG0180001296.01.T01
Chr1 CDS 18953694 18953789 18953694 ID=MsG0180001296.01.T01:cds;Parent=MsG0180001296.01.T01
Gene Sequence

>MsG0180001296.01.T01

ATGGATTTGCTTCCACCTGGTGCTGGCTTCGTCCCTTCTGATGAACTCCTTGTTAGCTATTACCTTGCCAACAAAAACAATGAAGATGTTCAGAATTTCCATGGTTCTGACCTGATTAAGGAGCTGAACTTGTACCAGTATGATCCATTTGAATTGCATCTTGCTCAATCCTTTTTCTTCCGTCACACAAGGGAGTTTTACTGTTTCACTGCCAAAACTGATGAGCAGAGGAGGCATTGTAAGACTGGATTCTGGATGCAGAAGGGAGCTGTCAAAGACATTACTGCTGGAGCTGATGACGTGTTGGTGGGAAAGAAGTCTCTCTTCTTTTTCTATATAGGAAATTCCCCTCAGAACGCGATCAAAACTAGTTGGACTATGTACGAGTACACTCTTGTTAACAACCCTCAGGCTCCTTTTGTTGTTTGTCGTGTTTTTGACCGCCCTAGAGGGATGGATTTGGACTCTGAATTTAGGGCCTTATCTGATGTAGATGAAGGTGATGCTGCTGGTGACGACTCTGATGATAAGGCGAATGAAGGAACTCAGCAACTTAAAGGGGCTGGGGCTAGTTCTTGTGATGGTGCTGGTGCTGGTGCTGAGCAAGGTGATGCATCGCGTTTCATGGCTACTCAAGCCACTCTTCAGATGAGTTATGCTGCATTTCTGGACTGTGTTGTGTCCCACATGGAAGCTATGACGCCAGAGCAAGCTTATGGAGGAAGATTTTATTTAAATTATTGA
Protein sequence

>MsG0180001296.01.T01

MDLLPPGAGFVPSDELLVSYYLANKNNEDVQNFHGSDLIKELNLYQYDPFELHLAQSFFFRHTREFYCFTAKTDEQRRHCKTGFWMQKGAVKDITAGADDVLVGKKSLFFFYIGNSPQNAIKTSWTMYEYTLVNNPQAPFVVCRVFDRPRGMDLDSEFRALSDVDEGDAAGDDSDDKANEGTQQLKGAGASSCDGAGAGAEQGDASRFMATQATLQMSYAAFLDCVVSHMEAMTPEQAYGGRFYLNY*