AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001320.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001320.01.T01 MTR_6g061070 67.347 441 90 6 123 512 33 470 0.0 575
MsG0180001320.01.T01 MTR_8g092510 80.921 152 20 2 1 147 172 319 2.65e-72 245
MsG0180001320.01.T01 MTR_3g009480 80.263 152 21 2 1 147 161 308 1.60e-71 243
MsG0180001320.01.T01 MTR_1g035520 42.587 317 133 7 118 400 82 383 1.15e-70 230
MsG0180001320.01.T01 MTR_1g035520 89.216 102 11 0 411 512 282 383 5.03e-58 197
MsG0180001320.01.T01 MTR_1g035570 36.224 392 229 9 124 512 21 394 1.48e-66 220
MsG0180001320.01.T01 MTR_1g035620 37.260 416 201 12 124 511 25 408 7.40e-64 214
MsG0180001320.01.T01 MTR_1g035480 65.753 146 39 2 123 265 32 169 3.33e-59 194
MsG0180001320.01.T01 MTR_1g035500 63.636 143 50 1 123 265 40 180 2.94e-56 186
MsG0180001320.01.T01 MTR_1g033740 66.434 143 45 2 123 265 37 176 1.85e-55 184
MsG0180001320.01.T01 MTR_1g035470 62.411 141 45 2 123 263 1 133 2.51e-53 177
MsG0180001320.01.T01 MTR_1g035510 62.238 143 50 3 123 265 1 139 4.03e-52 176
MsG0180001320.01.T01 MTR_1g035640 39.310 290 156 7 124 412 21 291 3.77e-51 181
MsG0180001320.01.T01 MTR_1g050845 34.218 377 187 10 124 477 25 363 1.54e-46 174
MsG0180001320.01.T01 MTR_1g035490 38.174 241 114 10 298 512 97 328 8.08e-39 144
MsG0180001320.01.T01 MTR_1g035540 82.192 73 13 0 366 438 31 103 3.33e-35 129
MsG0180001320.01.T01 MTR_5g044670 30.333 300 197 7 123 419 31 321 4.60e-33 129
MsG0180001320.01.T01 MTR_1g035650 41.753 194 92 8 124 314 25 200 1.58e-30 118
MsG0180001320.01.T01 MTR_3g098790 31.010 287 179 7 123 403 28 301 1.79e-28 115
MsG0180001320.01.T01 MTR_7g050720 31.864 295 175 10 123 400 25 310 5.40e-27 111
MsG0180001320.01.T01 MTR_7g050710 30.450 289 184 7 124 403 29 309 6.85e-27 111
MsG0180001320.01.T01 MTR_6g043890 31.136 273 163 10 124 385 31 289 4.69e-26 109
MsG0180001320.01.T01 MTR_7g050560 29.021 286 177 7 123 403 28 292 6.35e-26 108
MsG0180001320.01.T01 MTR_1g108780 27.331 311 192 10 124 420 13 303 9.40e-26 110
MsG0180001320.01.T01 MTR_8g103940 24.254 503 298 18 75 511 8 493 9.82e-26 110
MsG0180001320.01.T01 MTR_7g050590 30.796 289 185 9 123 403 1 282 4.51e-25 105
MsG0180001320.01.T01 MTR_4g119990 28.333 300 197 12 124 412 31 323 2.38e-24 105
MsG0180001320.01.T01 MTR_7g050580 31.707 287 168 11 123 403 28 292 1.12e-23 102
MsG0180001320.01.T01 MTR_3g061310 28.826 281 173 9 124 399 26 284 8.44e-22 95.9
MsG0180001320.01.T01 MTR_1g035460 27.010 311 199 10 123 415 1 301 3.57e-21 95.9
MsG0180001320.01.T01 MTR_3g061350 28.521 284 169 11 124 399 26 283 7.11e-21 93.2
MsG0180001320.01.T01 MTR_8g092500 75.000 56 14 0 43 98 69 124 1.36e-19 85.5
MsG0180001320.01.T01 MTR_3g061370 29.758 289 159 11 124 399 23 280 1.51e-18 86.3
MsG0180001320.01.T01 MTR_3g005460 25.517 290 152 10 124 400 278 516 3.62e-18 87.8
MsG0180001320.01.T01 MTR_3g061340 26.056 284 168 12 124 400 26 274 2.78e-16 79.3
MsG0180001320.01.T01 MTR_3g061320 25.267 281 179 9 124 400 26 279 9.12e-16 78.2
MsG0180001320.01.T01 MTR_3g061330 28.000 200 119 5 124 317 26 206 8.78e-13 68.9
MsG0180001320.01.T01 MTR_3g061290 29.091 165 105 4 124 276 26 190 8.79e-13 67.8
MsG0180001320.01.T01 MTR_1g021360 27.372 274 174 12 124 387 198 456 3.12e-12 68.9
MsG0180001320.01.T01 MTR_7g050640 42.308 78 42 2 123 197 28 105 4.93e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001320.01.T01 AT2G21790 78.723 141 21 2 1 136 172 308 1.97e-66 229
MsG0180001320.01.T01 AT3G18990 24.528 318 191 11 124 398 22 333 9.15e-15 76.3
MsG0180001320.01.T01 AT3G18990 24.528 318 191 11 124 398 22 333 1.22e-14 75.9

Find 111 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGACCCATTTGGAAGTTTA+AGG 0.158354 1:+19389927 None:intergenic
CGATAATTTGAGAGTGAAAT+TGG 0.170501 1:+19389228 None:intergenic
TGCAATGCGGTTATGATATT+TGG 0.243865 1:-19389886 MsG0180001320.01.T01:CDS
GTTGAAGAATCTTTAATTAA+AGG 0.260214 1:+19387601 None:intergenic
TTATGTTACACCCCTTAAAA+TGG 0.261914 1:+19387816 None:intergenic
TTTCTGCACTGAATCATCTT+AGG 0.271721 1:+19387502 None:intergenic
AACACAGTTGCAAAATAAAC+TGG 0.288335 1:+19387766 None:intergenic
GGGCAGGGTTCCTTTGTGGC+TGG 0.299989 1:+19388670 None:intergenic
AAAAGACATAATATATTTAG+TGG 0.334344 1:-19388055 MsG0180001320.01.T01:CDS
GGAAGGTGATAGATTAAAAT+TGG 0.340370 1:-19389194 MsG0180001320.01.T01:intron
TATAATGAACATCTCGACTA+TGG 0.355043 1:-19387980 MsG0180001320.01.T01:CDS
CTCTGGGCAGGGTTCCTTTG+TGG 0.360778 1:+19388666 None:intergenic
AGTTTAAGGAATGTTGGATT+TGG 0.362917 1:+19389941 None:intergenic
TAGTGTTGCAATAGCTACTA+TGG 0.363835 1:-19387435 MsG0180001320.01.T01:three_prime_UTR
TTGAATTGGTCATGTAAATT+CGG 0.365554 1:+19388213 None:intergenic
AATTCGGTGGAGTTGAAAAT+AGG 0.372119 1:-19388031 MsG0180001320.01.T01:CDS
GGCAGGGTTCCTTTGTGGCT+GGG 0.376943 1:+19388671 None:intergenic
TGCCCATGGTAGTTACATTC+AGG 0.381703 1:-19391313 MsG0180001320.01.T01:CDS
TTCGGTAATTTCACTGTCAT+TGG 0.384317 1:+19389688 None:intergenic
TAATATATTTAGTGGAAATT+CGG 0.396970 1:-19388047 MsG0180001320.01.T01:CDS
TGCAACTGTGTTCTTCCTGT+TGG 0.411001 1:-19387755 MsG0180001320.01.T01:three_prime_UTR
GAAATACCTTGAAACTGCTC+TGG 0.423422 1:+19388649 None:intergenic
ACATTCCTTAAACTTCCAAA+TGG 0.427455 1:-19389932 MsG0180001320.01.T01:CDS
GTGAAATTGGGATTCTCATT+GGG 0.428059 1:+19389241 None:intergenic
TGTTGGTTTAAATGCAAGAA+AGG 0.431501 1:-19387738 MsG0180001320.01.T01:three_prime_UTR
AGTGAAATTGGGATTCTCAT+TGG 0.432342 1:+19389240 None:intergenic
TTTCTTGCATTTAAACCAAC+AGG 0.435377 1:+19387740 None:intergenic
ACCTTGAAACTGCTCTGGGC+AGG 0.439680 1:+19388654 None:intergenic
GGAACAAATGGAACGTCTAA+TGG 0.441669 1:-19391291 MsG0180001320.01.T01:CDS
AGTTACATTCAGGGAACAAA+TGG 0.445453 1:-19391303 MsG0180001320.01.T01:CDS
GAATTTACATGACCAATTCA+AGG 0.445932 1:-19388211 MsG0180001320.01.T01:CDS
AAATCAGAAGGCAGTCCAAC+AGG 0.448615 1:-19387670 MsG0180001320.01.T01:three_prime_UTR
GGTCTGTGTGCAAAATGAAT+TGG 0.448911 1:-19389910 MsG0180001320.01.T01:CDS
CTTCTTAGTGTGCATGAAAG+AGG 0.451624 1:-19391427 MsG0180001320.01.T01:CDS
TTTGGAAGTTTAAGGAATGT+TGG 0.452690 1:+19389935 None:intergenic
CAAATTATCGCGATCTTATG+TGG 0.458151 1:-19389215 MsG0180001320.01.T01:CDS
CTCAAACAAGCAAGTGTCTC+CGG 0.460221 1:+19387907 None:intergenic
CATCAAGACATTGTCTTCCT+CGG 0.464836 1:-19387627 MsG0180001320.01.T01:three_prime_UTR
GATAATTTGAGAGTGAAATT+GGG 0.465805 1:+19389229 None:intergenic
GGGGATTTATGATACATTGA+AGG 0.466284 1:-19391394 MsG0180001320.01.T01:CDS
ATAGTAATTGTGAATGAAAG+TGG 0.468831 1:+19388697 None:intergenic
AATAACTTTGAAATTACAGC+TGG 0.470091 1:-19388793 MsG0180001320.01.T01:CDS
CTAATAGAAACAATGGAGAC+AGG 0.476815 1:-19389330 MsG0180001320.01.T01:CDS
AATCTGACCCTCCTTTGTAC+TGG 0.482912 1:+19389807 None:intergenic
CATTCCTTAAACTTCCAAAT+GGG 0.494976 1:-19389931 MsG0180001320.01.T01:CDS
ATGAAAGAGGATAGTATTGA+GGG 0.496212 1:-19391414 MsG0180001320.01.T01:CDS
TGATGAACCTTGAGGATTGG+AGG 0.498298 1:+19387645 None:intergenic
CCCTGCCCAGAGCAGTTTCA+AGG 0.500003 1:-19388655 MsG0180001320.01.T01:intron
TGAAAATAGGAGAAGGAACA+TGG 0.504948 1:-19388018 MsG0180001320.01.T01:CDS
GTCTGTGTGCAAAATGAATT+GGG 0.510202 1:-19389909 MsG0180001320.01.T01:CDS
TTACGTTACTATTACTGTTG+TGG 0.511612 1:+19387579 None:intergenic
TATCTCTCTACAAAACTCCT+TGG 0.511924 1:+19389977 None:intergenic
CATGAAAGAGGATAGTATTG+AGG 0.513073 1:-19391415 MsG0180001320.01.T01:CDS
TCTTGATGAACCTTGAGGAT+TGG 0.514076 1:+19387642 None:intergenic
ATCATTTCATGTCTCAGAGA+TGG 0.514754 1:-19391512 MsG0180001320.01.T01:CDS
AAGATAATGAGGGTTTCTGT+TGG 0.517292 1:-19391573 None:intergenic
CAACTACTCAACTGAGGCCT+AGG 0.520856 1:+19391450 None:intergenic
TGTGCAAAATCATGTGTTCA+AGG 0.521657 1:-19387876 MsG0180001320.01.T01:CDS
AGTAAATGTGCTGGAGGGAT+TGG 0.525775 1:-19391357 MsG0180001320.01.T01:CDS
TGATTGAACACACGCAGCAT+TGG 0.527196 1:+19391261 None:intergenic
AAGGAACATGACTTGCAAGT+TGG 0.533438 1:-19388754 MsG0180001320.01.T01:CDS
GAGAGTGCTGCTACACCTCA+AGG 0.536330 1:-19389632 MsG0180001320.01.T01:CDS
GACTATGGATGGTTCACTAA+AGG 0.536976 1:-19387965 MsG0180001320.01.T01:CDS
ACACCTCAAGGGACAAGCAT+TGG 0.540284 1:-19389620 MsG0180001320.01.T01:CDS
GCCCATGGTAGTTACATTCA+GGG 0.544066 1:-19391312 MsG0180001320.01.T01:CDS
TTGCCAATGCTTGTCCCTTG+AGG 0.544193 1:+19389617 None:intergenic
TATATTTAGTGGAAATTCGG+TGG 0.544355 1:-19388044 MsG0180001320.01.T01:CDS
AAATAGTGTTATGAGAATTG+TGG 0.546897 1:-19387531 MsG0180001320.01.T01:three_prime_UTR
ACTTTGAAATTACAGCTGGT+TGG 0.547063 1:-19388789 MsG0180001320.01.T01:CDS
AATGCAATGATTAGAAGCAC+TGG 0.557729 1:-19388862 MsG0180001320.01.T01:CDS
TGAATTGGAAAAGATTTGCA+CGG 0.558326 1:-19389859 MsG0180001320.01.T01:CDS
ATGGATGGTTCACTAAAGGC+TGG 0.558556 1:-19387961 MsG0180001320.01.T01:CDS
AGAGATTGTAAAGTAAAGAC+CGG 0.560191 1:-19387926 MsG0180001320.01.T01:CDS
CCTTGAAACTGCTCTGGGCA+GGG 0.560907 1:+19388655 None:intergenic
TACATGAGTGAGCTGTTGCA+AGG 0.564294 1:-19388886 MsG0180001320.01.T01:CDS
ATGAACATCTCGACTATGGA+TGG 0.566956 1:-19387976 MsG0180001320.01.T01:CDS
AAGAAAAGAGGAAAATCAGA+AGG 0.567246 1:-19387682 MsG0180001320.01.T01:three_prime_UTR
TGAGGATTGGAGGTACCTGT+TGG 0.568799 1:+19387655 None:intergenic
TTCCCTGAATGTAACTACCA+TGG 0.572845 1:+19391310 None:intergenic
TCCCTGAATGTAACTACCAT+GGG 0.576113 1:+19391311 None:intergenic
GCTGTCATTAGTAAATGTGC+TGG 0.580047 1:-19391366 MsG0180001320.01.T01:CDS
GCAGAGGCTAATAGAAACAA+TGG 0.580274 1:-19389337 MsG0180001320.01.T01:intron
TTAGAAGCACTGGTGAGGAC+AGG 0.585346 1:-19388852 MsG0180001320.01.T01:CDS
AAATACCTTGAAACTGCTCT+GGG 0.593332 1:+19388650 None:intergenic
TTTGCACGGTCGCTTAGATG+CGG 0.593941 1:-19389845 MsG0180001320.01.T01:CDS
TTATCGCGATCTTATGTGGA+AGG 0.597524 1:-19389211 MsG0180001320.01.T01:CDS
TTGCAATAGCTACTATGGAA+TGG 0.603111 1:-19387430 MsG0180001320.01.T01:three_prime_UTR
GTTCACAACATACGTGCCCA+TGG 0.612170 1:-19391327 MsG0180001320.01.T01:CDS
AATATTGTTTGCTAGTGTCG+TGG 0.612366 1:+19389717 None:intergenic
ACATGAGTGAGCTGTTGCAA+GGG 0.614327 1:-19388885 MsG0180001320.01.T01:CDS
GGTTTCTGTTGGAATTCACA+AGG 0.619618 1:-19391562 MsG0180001320.01.T01:CDS
TCTTTAATTAAAGGCGACCG+AGG 0.627617 1:+19387610 None:intergenic
CAATGTCTTGATGAACCTTG+AGG 0.630838 1:+19387637 None:intergenic
GTCATTAGTAAATGTGCTGG+AGG 0.633781 1:-19391363 MsG0180001320.01.T01:CDS
GCATGTTATGTTGATCAGAA+AGG 0.634303 1:-19391234 MsG0180001320.01.T01:CDS
ACAGGTACCTCCAATCCTCA+AGG 0.635221 1:-19387652 MsG0180001320.01.T01:three_prime_UTR
GCACTGGTGAGGACAGGACG+TGG 0.639691 1:-19388846 MsG0180001320.01.T01:CDS
AGAGTGCTGCTACACCTCAA+GGG 0.641943 1:-19389631 MsG0180001320.01.T01:CDS
TAATAGAAACAATGGAGACA+GGG 0.645437 1:-19389329 MsG0180001320.01.T01:CDS
TACTATTATCCCAGCCACAA+AGG 0.646969 1:-19388680 MsG0180001320.01.T01:CDS
GTGGAGTTGAAAATAGGAGA+AGG 0.647534 1:-19388025 MsG0180001320.01.T01:CDS
GTTCCAGCGTTGAAAAGTGT+AGG 0.657151 1:+19391474 None:intergenic
ACACAGTTGCAAAATAAACT+GGG 0.658801 1:+19387767 None:intergenic
AATGATTAGAAGCACTGGTG+AGG 0.660410 1:-19388857 MsG0180001320.01.T01:CDS
TCATTAGTAAATGTGCTGGA+GGG 0.681924 1:-19391362 MsG0180001320.01.T01:CDS
TGAAAGAGGATAGTATTGAG+GGG 0.695012 1:-19391413 MsG0180001320.01.T01:CDS
AAGAAGCAACTACTCAACTG+AGG 0.709378 1:+19391444 None:intergenic
GTATTCTTTCGAAAACCACG+TGG 0.710259 1:+19388906 None:intergenic
TATTCTTTCGAAAACCACGT+GGG 0.736746 1:+19388907 None:intergenic
AAAATGAATTGGGTGCAATG+CGG 0.797500 1:-19389899 MsG0180001320.01.T01:CDS
TGAAACAGAGGATACCCACG+TGG 0.823355 1:-19388921 MsG0180001320.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTATTATCATTAATAG+AGG - Chr1:19388444-19388463 MsG0180001320.01.T01:intron 10.0%
!! TTAAATATTACTAACAAAAT+AGG + Chr1:19389931-19389950 None:intergenic 10.0%
!!! ATTTTGTTAGTAATATTTAA+GGG - Chr1:19389931-19389950 MsG0180001320.01.T01:CDS 10.0%
!!! TATTTCTTTCATTATTATTT+TGG - Chr1:19390349-19390368 MsG0180001320.01.T01:intron 10.0%
!!! TATTTTGTTAGTAATATTTA+AGG - Chr1:19389930-19389949 MsG0180001320.01.T01:CDS 10.0%
!! AAAAGACATAATATATTTAG+TGG - Chr1:19390926-19390945 MsG0180001320.01.T01:intron 15.0%
!! AAAATTGAATGAATAAGAAA+AGG + Chr1:19388232-19388251 None:intergenic 15.0%
!! ATTAAAAATAAATCATGGAA+AGG - Chr1:19387824-19387843 MsG0180001320.01.T01:three_prime_UTR 15.0%
!! TAATATATTTAGTGGAAATT+CGG - Chr1:19390934-19390953 MsG0180001320.01.T01:intron 15.0%
!! TTGGAATTAAAAATAAATCA+TGG - Chr1:19387819-19387838 MsG0180001320.01.T01:three_prime_UTR 15.0%
!!! AATTATTTTCAGCATTTAAA+AGG + Chr1:19389613-19389632 None:intergenic 15.0%
!!! CTTAAAAAAAAAAAAGGTAT+AGG + Chr1:19389820-19389839 None:intergenic 15.0%
!! AATAGTATGTTTACATTACA+TGG + Chr1:19390492-19390511 None:intergenic 20.0%
!! ACAATGTATGAATTTATTAC+AGG + Chr1:19388619-19388638 None:intergenic 20.0%
!! GATTTATCATCATTAATAAG+TGG - Chr1:19388410-19388429 MsG0180001320.01.T01:intron 20.0%
!! GTTGAAGAATCTTTAATTAA+AGG + Chr1:19391383-19391402 None:intergenic 20.0%
!! TTTGTGAAATCTAAACTAAT+TGG + Chr1:19388726-19388745 None:intergenic 20.0%
!!! ATGTACTTTTGTAATTTGTA+TGG + Chr1:19389482-19389501 None:intergenic 20.0%
!!! GTTGATTTTCTTTTTTTTCA+GGG + Chr1:19389323-19389342 None:intergenic 20.0%
!!! TAATTTAAAGTTTTTTGCAG+AGG - Chr1:19389628-19389647 MsG0180001320.01.T01:CDS 20.0%
!!! TGTTGATTTTCTTTTTTTTC+AGG + Chr1:19389324-19389343 None:intergenic 20.0%
!!! TTCTGAAAATGAAGAATAAT+AGG + Chr1:19388579-19388598 None:intergenic 20.0%
!!! TTGATTTTCTTTTTTTTCAG+GGG + Chr1:19389322-19389341 None:intergenic 20.0%
!!! TTTTAAGTAAATAGCGATTT+TGG - Chr1:19389833-19389852 MsG0180001320.01.T01:CDS 20.0%
! AAATAGTGTTATGAGAATTG+TGG - Chr1:19391450-19391469 MsG0180001320.01.T01:CDS 25.0%
! AAATGCACAAAAACTAAAGA+TGG - Chr1:19389689-19389708 MsG0180001320.01.T01:CDS 25.0%
! AACAGAGTAAACATAGTTTA+AGG + Chr1:19390723-19390742 None:intergenic 25.0%
! AAGTTGAAGAAAAAGAAAAG+AGG - Chr1:19391287-19391306 MsG0180001320.01.T01:CDS 25.0%
! AATGCACAAAAACTAAAGAT+GGG - Chr1:19389690-19389709 MsG0180001320.01.T01:CDS 25.0%
! ACAGAACTTGAGATAAATAT+AGG + Chr1:19389454-19389473 None:intergenic 25.0%
! ATAGTAATTGTGAATGAAAG+TGG + Chr1:19390287-19390306 None:intergenic 25.0%
! ATGTTACAAAAACCTTGAAT+TGG + Chr1:19390785-19390804 None:intergenic 25.0%
! CAAAAAAGATTATTCAAGCA+CGG - Chr1:19388024-19388043 MsG0180001320.01.T01:CDS 25.0%
! CAGAACTTGAGATAAATATA+GGG + Chr1:19389453-19389472 None:intergenic 25.0%
! GATAATTTGAGAGTGAAATT+GGG + Chr1:19389755-19389774 None:intergenic 25.0%
! GTAATCTTTGAATGTATCTT+TGG + Chr1:19389970-19389989 None:intergenic 25.0%
! TCACAACATATCAATAAACA+AGG + Chr1:19390844-19390863 None:intergenic 25.0%
! TTACTAACAAAATAGGCATT+TGG + Chr1:19389924-19389943 None:intergenic 25.0%
! TTGAATTGGTCATGTAAATT+CGG + Chr1:19390771-19390790 None:intergenic 25.0%
! TTTGTTCATATATATGCAGT+TGG - Chr1:19390880-19390899 MsG0180001320.01.T01:intron 25.0%
!! TTCTTTTTCTTCAACTTTGT+CGG + Chr1:19391284-19391303 None:intergenic 25.0%
!! TTTGTGTCTTACCATTTTAA+GGG - Chr1:19391154-19391173 MsG0180001320.01.T01:intron 25.0%
!! TTTTGTAACATCATTAGACA+AGG - Chr1:19390794-19390813 MsG0180001320.01.T01:intron 25.0%
!!! AAATCCTTACATGCTTTTTA+AGG - Chr1:19388088-19388107 MsG0180001320.01.T01:intron 25.0%
!!! AATAACTTTGAAATTACAGC+TGG - Chr1:19390188-19390207 MsG0180001320.01.T01:intron 25.0%
!!! ATGATATTTGGCTTTTGAAT+TGG - Chr1:19389107-19389126 MsG0180001320.01.T01:intron 25.0%
!!! CTATAGATTAGGGATTTTTT+TGG - Chr1:19388300-19388319 MsG0180001320.01.T01:intron 25.0%
!!! TTACAAAAGTACATGTTTTC+TGG - Chr1:19389488-19389507 MsG0180001320.01.T01:intron 25.0%
!!! TTCTCATAACACTATTTTAG+AGG + Chr1:19391447-19391466 None:intergenic 25.0%
AACACAGTTGCAAAATAAAC+TGG + Chr1:19391218-19391237 None:intergenic 30.0%
AAGAAAAGAGGAAAATCAGA+AGG - Chr1:19391299-19391318 MsG0180001320.01.T01:CDS 30.0%
AATGAAAACCTCTCACATTA+AGG + Chr1:19389861-19389880 None:intergenic 30.0%
ACACAGTTGCAAAATAAACT+GGG + Chr1:19391217-19391236 None:intergenic 30.0%
ACATATTCCATATCTTCTTC+GGG + Chr1:19390588-19390607 None:intergenic 30.0%
ACATTCCTTAAACTTCCAAA+TGG - Chr1:19389049-19389068 MsG0180001320.01.T01:intron 30.0%
AGAGATTGTAAAGTAAAGAC+CGG - Chr1:19391055-19391074 MsG0180001320.01.T01:intron 30.0%
AGTTTAAGGAATGTTGGATT+TGG + Chr1:19389043-19389062 None:intergenic 30.0%
ATCCTGTGTAGAAAAGTTTA+AGG - Chr1:19390451-19390470 MsG0180001320.01.T01:intron 30.0%
ATTCACTATTTAAATGTGCG+AGG + Chr1:19390006-19390025 None:intergenic 30.0%
ATTCATTCGAGCTATAGATT+AGG - Chr1:19388289-19388308 MsG0180001320.01.T01:intron 30.0%
CACATATTCCATATCTTCTT+CGG + Chr1:19390589-19390608 None:intergenic 30.0%
CATACATTGTTCTTGACAAA+TGG - Chr1:19388629-19388648 MsG0180001320.01.T01:intron 30.0%
CATATGCTTGACTTAAAATG+TGG - Chr1:19388817-19388836 MsG0180001320.01.T01:CDS 30.0%
CATTACTAGTTCAAACTCAT+TGG - Chr1:19388950-19388969 MsG0180001320.01.T01:intron 30.0%
CATTCCTTAAACTTCCAAAT+GGG - Chr1:19389050-19389069 MsG0180001320.01.T01:intron 30.0%
CGATAATTTGAGAGTGAAAT+TGG + Chr1:19389756-19389775 None:intergenic 30.0%
GAAGAAGATATGGAATATGT+GGG - Chr1:19390588-19390607 MsG0180001320.01.T01:intron 30.0%
GAATTTACATGACCAATTCA+AGG - Chr1:19390770-19390789 MsG0180001320.01.T01:intron 30.0%
GGAAGGTGATAGATTAAAAT+TGG - Chr1:19389787-19389806 MsG0180001320.01.T01:CDS 30.0%
TAATAGAAACAATGGAGACA+GGG - Chr1:19389652-19389671 MsG0180001320.01.T01:CDS 30.0%
TATAATGAACATCTCGACTA+TGG - Chr1:19391001-19391020 MsG0180001320.01.T01:intron 30.0%
TATATTTAGTGGAAATTCGG+TGG - Chr1:19390937-19390956 MsG0180001320.01.T01:intron 30.0%
TGAATTGGAAAAGATTTGCA+CGG - Chr1:19389122-19389141 MsG0180001320.01.T01:intron 30.0%
TTACGTTACTATTACTGTTG+TGG + Chr1:19391405-19391424 None:intergenic 30.0%
TTATGTTACACCCCTTAAAA+TGG + Chr1:19391168-19391187 None:intergenic 30.0%
TTCATTCGAGCTATAGATTA+GGG - Chr1:19388290-19388309 MsG0180001320.01.T01:intron 30.0%
TTTCATTTCACTATAGGAAC+TGG - Chr1:19389874-19389893 MsG0180001320.01.T01:CDS 30.0%
TTTCTTGCATTTAAACCAAC+AGG + Chr1:19391244-19391263 None:intergenic 30.0%
TTTGGAAGTTTAAGGAATGT+TGG + Chr1:19389049-19389068 None:intergenic 30.0%
TTTGTTTAGTGCTATCATGA+AGG - Chr1:19388536-19388555 MsG0180001320.01.T01:intron 30.0%
! AACCTTAAACTTTTCTACAC+AGG + Chr1:19390456-19390475 None:intergenic 30.0%
! AGAGGTTTTCATTTCACTAT+AGG - Chr1:19389868-19389887 MsG0180001320.01.T01:CDS 30.0%
! ATGAAAGAGGATAGTATTGA+GGG - Chr1:19387567-19387586 MsG0180001320.01.T01:three_prime_UTR 30.0%
! ATTCAGTTTGCTTAATCAGT+TGG - Chr1:19388840-19388859 MsG0180001320.01.T01:CDS 30.0%
! GCATTGTCTCTGATTTTATT+TGG + Chr1:19390566-19390585 None:intergenic 30.0%
! GTTTGTGTCTTACCATTTTA+AGG - Chr1:19391153-19391172 MsG0180001320.01.T01:intron 30.0%
! TTGTGTCTTACCATTTTAAG+GGG - Chr1:19391155-19391174 MsG0180001320.01.T01:intron 30.0%
!! TGTTGGTTTAAATGCAAGAA+AGG - Chr1:19391243-19391262 MsG0180001320.01.T01:CDS 30.0%
!! TTTTTAAGGATGCTTGCAAT+AGG - Chr1:19388102-19388121 MsG0180001320.01.T01:intron 30.0%
!!! AGATTTATTTTACGCCCTTT+GGG - Chr1:19387863-19387882 MsG0180001320.01.T01:CDS 30.0%
!!! CTTTTAGTTTTCCAGTACAA+AGG - Chr1:19389163-19389182 MsG0180001320.01.T01:intron 30.0%
!!! TAGATTAGGGATTTTTTTGG+TGG - Chr1:19388303-19388322 MsG0180001320.01.T01:intron 30.0%
!!! TGGTTGGAAGTCATTTTTAA+AGG - Chr1:19390208-19390227 MsG0180001320.01.T01:intron 30.0%
AAAATGAATTGGGTGCAATG+CGG - Chr1:19389082-19389101 MsG0180001320.01.T01:intron 35.0%
AAACAAACCCAAAACAGTGT+TGG + Chr1:19388523-19388542 None:intergenic 35.0%
AAATACCTTGAAACTGCTCT+GGG + Chr1:19390334-19390353 None:intergenic 35.0%
AACAAACCCAAAACAGTGTT+GGG + Chr1:19388522-19388541 None:intergenic 35.0%
AAGAAGAAGAAAGTGAGTGT+TGG + Chr1:19388200-19388219 None:intergenic 35.0%
ACTCTTTCCATAAAGAGATC+AGG + Chr1:19387891-19387910 None:intergenic 35.0%
AGTGAAATTGGGATTCTCAT+TGG + Chr1:19389744-19389763 None:intergenic 35.0%
AGTTACATTCAGGGAACAAA+TGG - Chr1:19387678-19387697 MsG0180001320.01.T01:three_prime_UTR 35.0%
ATCATTTCATGTCTCAGAGA+TGG - Chr1:19387469-19387488 MsG0180001320.01.T01:three_prime_UTR 35.0%
CAAATTATCGCGATCTTATG+TGG - Chr1:19389766-19389785 MsG0180001320.01.T01:CDS 35.0%
CATAATATATGCAAGGTCGA+AGG + Chr1:19388344-19388363 None:intergenic 35.0%
CATGAAAGAGGATAGTATTG+AGG - Chr1:19387566-19387585 MsG0180001320.01.T01:three_prime_UTR 35.0%
CCATTTATGGAAACATGCAT+GGG + Chr1:19388268-19388287 None:intergenic 35.0%
CGAAGAAGATATGGAATATG+TGG - Chr1:19390587-19390606 MsG0180001320.01.T01:intron 35.0%
CTAATAGAAACAATGGAGAC+AGG - Chr1:19389651-19389670 MsG0180001320.01.T01:CDS 35.0%
GACGATGCATAATATATGCA+AGG + Chr1:19388351-19388370 None:intergenic 35.0%
GCATGTTATGTTGATCAGAA+AGG - Chr1:19387747-19387766 MsG0180001320.01.T01:three_prime_UTR 35.0%
GCTCGAATGAATTCCATTTA+TGG + Chr1:19388281-19388300 None:intergenic 35.0%
GGGGATTTATGATACATTGA+AGG - Chr1:19387587-19387606 MsG0180001320.01.T01:three_prime_UTR 35.0%
GTCTGTGTGCAAAATGAATT+GGG - Chr1:19389072-19389091 MsG0180001320.01.T01:intron 35.0%
GTGAAATTGGGATTCTCATT+GGG + Chr1:19389743-19389762 None:intergenic 35.0%
TAGTGTTGCAATAGCTACTA+TGG - Chr1:19391546-19391565 MsG0180001320.01.T01:CDS 35.0%
TATCTCTCTACAAAACTCCT+TGG + Chr1:19389007-19389026 None:intergenic 35.0%
TATTCTTTCGAAAACCACGT+GGG + Chr1:19390077-19390096 None:intergenic 35.0%
TCAACTATATCAGCATGTCA+TGG + Chr1:19387795-19387814 None:intergenic 35.0%
TCATTAGTAAATGTGCTGGA+GGG - Chr1:19387619-19387638 MsG0180001320.01.T01:three_prime_UTR 35.0%
TCCATTTATGGAAACATGCA+TGG + Chr1:19388269-19388288 None:intergenic 35.0%
TGAAAATAGGAGAAGGAACA+TGG - Chr1:19390963-19390982 MsG0180001320.01.T01:intron 35.0%
TGCAATGCGGTTATGATATT+TGG - Chr1:19389095-19389114 MsG0180001320.01.T01:intron 35.0%
TGTGCAAAATCATGTGTTCA+AGG - Chr1:19391105-19391124 MsG0180001320.01.T01:intron 35.0%
TTCGGTAATTTCACTGTCAT+TGG + Chr1:19389296-19389315 None:intergenic 35.0%
TTGAAGTCACAGATAGAAAC+TGG - Chr1:19388065-19388084 MsG0180001320.01.T01:CDS 35.0%
TTGCAATAGCTACTATGGAA+TGG - Chr1:19391551-19391570 MsG0180001320.01.T01:CDS 35.0%
TTTCTGCACTGAATCATCTT+AGG + Chr1:19391482-19391501 None:intergenic 35.0%
! AATATTGTTTGCTAGTGTCG+TGG + Chr1:19389267-19389286 None:intergenic 35.0%
! AATGCAATGATTAGAAGCAC+TGG - Chr1:19390119-19390138 MsG0180001320.01.T01:intron 35.0%
! AATTCGGTGGAGTTGAAAAT+AGG - Chr1:19390950-19390969 MsG0180001320.01.T01:intron 35.0%
! ATGGAATATGTGGGCAATTT+TGG - Chr1:19390597-19390616 MsG0180001320.01.T01:intron 35.0%
! GCATCCTTAAAAAGCATGTA+AGG + Chr1:19388095-19388114 None:intergenic 35.0%
! TAGTTTTCCAGTACAAAGGA+GGG - Chr1:19389167-19389186 MsG0180001320.01.T01:intron 35.0%
! TGAAAGAGGATAGTATTGAG+GGG - Chr1:19387568-19387587 MsG0180001320.01.T01:three_prime_UTR 35.0%
! TGCTGATATAGTTGACGTTT+TGG - Chr1:19387800-19387819 MsG0180001320.01.T01:three_prime_UTR 35.0%
! TGTCTTTTTAACAGCTCACT+TGG + Chr1:19390914-19390933 None:intergenic 35.0%
! TTTACCTGAGACTTTTTGCT+GGG + Chr1:19389413-19389432 None:intergenic 35.0%
! TTTTCTTGCAGATGATTCCA+AGG - Chr1:19388987-19389006 MsG0180001320.01.T01:intron 35.0%
! TTTTGGTACCTTAATGTGAG+AGG - Chr1:19389850-19389869 MsG0180001320.01.T01:CDS 35.0%
!! ACTTTGAAATTACAGCTGGT+TGG - Chr1:19390192-19390211 MsG0180001320.01.T01:intron 35.0%
!! CTGATTTTATTTGGACTCGT+TGG + Chr1:19390557-19390576 None:intergenic 35.0%
!! GGAGTTTTGTAGAGAGATAT+TGG - Chr1:19389008-19389027 MsG0180001320.01.T01:intron 35.0%
!! TTAGTTTTCCAGTACAAAGG+AGG - Chr1:19389166-19389185 MsG0180001320.01.T01:intron 35.0%
!!! CTTTTTTTTCAGGGGTTGTT+CGG + Chr1:19389314-19389333 None:intergenic 35.0%
!!! GAGATTTATTTTACGCCCTT+TGG - Chr1:19387862-19387881 MsG0180001320.01.T01:CDS 35.0%
AAAAGCAACCAGCAGAATCT+GGG - Chr1:19388125-19388144 MsG0180001320.01.T01:intron 40.0%
AAGAAGCAACTACTCAACTG+AGG + Chr1:19387540-19387559 None:intergenic 40.0%
ACAAACCCAAAACAGTGTTG+GGG + Chr1:19388521-19388540 None:intergenic 40.0%
ATGAACATCTCGACTATGGA+TGG - Chr1:19391005-19391024 MsG0180001320.01.T01:intron 40.0%
CAATGTCTTGATGAACCTTG+AGG + Chr1:19391347-19391366 None:intergenic 40.0%
CACAACTCATCTCATAAAGC+AGG + Chr1:19388687-19388706 None:intergenic 40.0%
CAGACCCATTTGGAAGTTTA+AGG + Chr1:19389057-19389076 None:intergenic 40.0%
CATCAAGACATTGTCTTCCT+CGG - Chr1:19391354-19391373 MsG0180001320.01.T01:CDS 40.0%
CCCATGCATGTTTCCATAAA+TGG - Chr1:19388265-19388284 MsG0180001320.01.T01:intron 40.0%
CTTCTTAGTGTGCATGAAAG+AGG - Chr1:19387554-19387573 MsG0180001320.01.T01:three_prime_UTR 40.0%
GAAATACCTTGAAACTGCTC+TGG + Chr1:19390335-19390354 None:intergenic 40.0%
GACTATGGATGGTTCACTAA+AGG - Chr1:19391016-19391035 MsG0180001320.01.T01:intron 40.0%
GCAGAGGCTAATAGAAACAA+TGG - Chr1:19389644-19389663 MsG0180001320.01.T01:CDS 40.0%
GCTGTCATTAGTAAATGTGC+TGG - Chr1:19387615-19387634 MsG0180001320.01.T01:three_prime_UTR 40.0%
GGAAAGAGTTCAGAGCAATT+GGG - Chr1:19387902-19387921 MsG0180001320.01.T01:CDS 40.0%
GGAACAAATGGAACGTCTAA+TGG - Chr1:19387690-19387709 MsG0180001320.01.T01:three_prime_UTR 40.0%
GGTCTGTGTGCAAAATGAAT+TGG - Chr1:19389071-19389090 MsG0180001320.01.T01:intron 40.0%
GGTTTCTGTTGGAATTCACA+AGG - Chr1:19387419-19387438 MsG0180001320.01.T01:three_prime_UTR 40.0%
GTATTCTTTCGAAAACCACG+TGG + Chr1:19390078-19390097 None:intergenic 40.0%
GTCATTAGTAAATGTGCTGG+AGG - Chr1:19387618-19387637 MsG0180001320.01.T01:three_prime_UTR 40.0%
GTGGAGTTGAAAATAGGAGA+AGG - Chr1:19390956-19390975 MsG0180001320.01.T01:intron 40.0%
TAAACCTTGAGCTGAAACAG+AGG - Chr1:19390048-19390067 MsG0180001320.01.T01:intron 40.0%
TACGCTCAGTATGAAAAAGC+AGG - Chr1:19387996-19388015 MsG0180001320.01.T01:CDS 40.0%
TACTATTATCCCAGCCACAA+AGG - Chr1:19390301-19390320 MsG0180001320.01.T01:intron 40.0%
TCCCTGAATGTAACTACCAT+GGG + Chr1:19387673-19387692 None:intergenic 40.0%
TCTTGATGAACCTTGAGGAT+TGG + Chr1:19391342-19391361 None:intergenic 40.0%
TCTTTAATTAAAGGCGACCG+AGG + Chr1:19391374-19391393 None:intergenic 40.0%
TGGAAAGAGTTCAGAGCAAT+TGG - Chr1:19387901-19387920 MsG0180001320.01.T01:CDS 40.0%
TTATCGCGATCTTATGTGGA+AGG - Chr1:19389770-19389789 MsG0180001320.01.T01:CDS 40.0%
TTCCCTGAATGTAACTACCA+TGG + Chr1:19387674-19387693 None:intergenic 40.0%
! AAAACCCCCAACACTGTTTT+GGG - Chr1:19388513-19388532 MsG0180001320.01.T01:intron 40.0%
! AAGGAACATGACTTGCAAGT+TGG - Chr1:19390227-19390246 MsG0180001320.01.T01:intron 40.0%
! ATTTTGCACACAGACCCATT+TGG + Chr1:19389067-19389086 None:intergenic 40.0%
! CTTTACCTGAGACTTTTTGC+TGG + Chr1:19389414-19389433 None:intergenic 40.0%
! GAGTTTAGAACTGAAGCCAT+TGG + Chr1:19388784-19388803 None:intergenic 40.0%
! TCCTGAGACCATGTGTTTTT+GGG + Chr1:19390644-19390663 None:intergenic 40.0%
!! AATGATTAGAAGCACTGGTG+AGG - Chr1:19390124-19390143 MsG0180001320.01.T01:intron 40.0%
!! TTTGCTTTTGATCCCTGACA+AGG - Chr1:19390513-19390532 MsG0180001320.01.T01:intron 40.0%
!!! GATTTTTTTGGTGGTGTCCA+AGG - Chr1:19388312-19388331 MsG0180001320.01.T01:intron 40.0%
AAAGAGATCAGGCACCCAAA+GGG + Chr1:19387880-19387899 None:intergenic 45.0%
AAATCAGAAGGCAGTCCAAC+AGG - Chr1:19391311-19391330 MsG0180001320.01.T01:CDS 45.0%
AACAGCAGCCCAAAAACACA+TGG - Chr1:19390633-19390652 MsG0180001320.01.T01:intron 45.0%
AAGTCATCAAACCTGTGCAC+TGG - Chr1:19388155-19388174 MsG0180001320.01.T01:intron 45.0%
AATCTGACCCTCCTTTGTAC+TGG + Chr1:19389177-19389196 None:intergenic 45.0%
ACATGAGTGAGCTGTTGCAA+GGG - Chr1:19390096-19390115 MsG0180001320.01.T01:intron 45.0%
AGCTCACAGGGACATAGATT+AGG - Chr1:19388387-19388406 MsG0180001320.01.T01:intron 45.0%
AGTAAATGTGCTGGAGGGAT+TGG - Chr1:19387624-19387643 MsG0180001320.01.T01:three_prime_UTR 45.0%
AGTCATCAAACCTGTGCACT+GGG - Chr1:19388156-19388175 MsG0180001320.01.T01:intron 45.0%
ATCCAACAATCTGCCAAACC+AGG + Chr1:19387957-19387976 None:intergenic 45.0%
ATGGATGGTTCACTAAAGGC+TGG - Chr1:19391020-19391039 MsG0180001320.01.T01:intron 45.0%
CTCAAACAAGCAAGTGTCTC+CGG + Chr1:19391077-19391096 None:intergenic 45.0%
GAAAAGCAACCAGCAGAATC+TGG - Chr1:19388124-19388143 MsG0180001320.01.T01:intron 45.0%
GACAATGCCCGAAGAAGATA+TGG - Chr1:19390578-19390597 MsG0180001320.01.T01:intron 45.0%
GAGTTCAGAGCAATTGGGAA+TGG - Chr1:19387907-19387926 MsG0180001320.01.T01:CDS 45.0%
GCCCATGGTAGTTACATTCA+GGG - Chr1:19387669-19387688 MsG0180001320.01.T01:three_prime_UTR 45.0%
GCTCACAGGGACATAGATTA+GGG - Chr1:19388388-19388407 MsG0180001320.01.T01:intron 45.0%
GTATCCTCTGTTTCAGCTCA+AGG + Chr1:19390055-19390074 None:intergenic 45.0%
GTCTCTGTTAGTGCTACCAA+TGG - Chr1:19388765-19388784 MsG0180001320.01.T01:CDS 45.0%
TAAAGAGATCAGGCACCCAA+AGG + Chr1:19387881-19387900 None:intergenic 45.0%
TAATTGTGCCCAGATTCTGC+TGG + Chr1:19388136-19388155 None:intergenic 45.0%
TACATGAGTGAGCTGTTGCA+AGG - Chr1:19390095-19390114 MsG0180001320.01.T01:intron 45.0%
TGATGAACCTTGAGGATTGG+AGG + Chr1:19391339-19391358 None:intergenic 45.0%
TGATTGAACACACGCAGCAT+TGG + Chr1:19387723-19387742 None:intergenic 45.0%
TGCAACTGTGTTCTTCCTGT+TGG - Chr1:19391226-19391245 MsG0180001320.01.T01:CDS 45.0%
TGCCCATGGTAGTTACATTC+AGG - Chr1:19387668-19387687 MsG0180001320.01.T01:three_prime_UTR 45.0%
TGCTTCATTGGGACAGAACA+GGG + Chr1:19387934-19387953 None:intergenic 45.0%
TTATTCAAGCACGGAGTCTG+TGG - Chr1:19388033-19388052 MsG0180001320.01.T01:CDS 45.0%
TTGGGTGCCTGATCTCTTTA+TGG - Chr1:19387881-19387900 MsG0180001320.01.T01:CDS 45.0%
! CAAACCCAAAACAGTGTTGG+GGG + Chr1:19388520-19388539 None:intergenic 45.0%
! CTCCTGAGACCATGTGTTTT+TGG + Chr1:19390645-19390664 None:intergenic 45.0%
! GAAAACCCCCAACACTGTTT+TGG - Chr1:19388512-19388531 MsG0180001320.01.T01:intron 45.0%
! GTTCCAGCGTTGAAAAGTGT+AGG + Chr1:19387510-19387529 None:intergenic 45.0%
! TCTCCTACACTTTTCAACGC+TGG - Chr1:19387504-19387523 MsG0180001320.01.T01:three_prime_UTR 45.0%
! TGAGCTTAGCTCAGTTGGTA+AGG + Chr1:19388373-19388392 None:intergenic 45.0%
! TTTTCAACGCTGGAACACCT+AGG - Chr1:19387514-19387533 MsG0180001320.01.T01:three_prime_UTR 45.0%
!! TATTTACTTAAAAAAAAAAA+AGG + Chr1:19389826-19389845 None:intergenic 5.0%
AAGGTCGAAGGTTCGAACCT+TGG + Chr1:19388332-19388351 None:intergenic 50.0%
ACACCTCAAGGGACAAGCAT+TGG - Chr1:19389361-19389380 MsG0180001320.01.T01:intron 50.0%
ACAGGTACCTCCAATCCTCA+AGG - Chr1:19391329-19391348 MsG0180001320.01.T01:CDS 50.0%
ACCAACTGAGCTAAGCTCAC+AGG - Chr1:19388374-19388393 MsG0180001320.01.T01:intron 50.0%
ACTCGATTATCCCAGTGCAC+AGG + Chr1:19388169-19388188 None:intergenic 50.0%
CAACTACTCAACTGAGGCCT+AGG + Chr1:19387534-19387553 None:intergenic 50.0%
CCAACTGAGCTAAGCTCACA+GGG - Chr1:19388375-19388394 MsG0180001320.01.T01:intron 50.0%
GCAACCCAGCAAAAAGTCTC+AGG - Chr1:19389406-19389425 MsG0180001320.01.T01:intron 50.0%
GCCAAACCAGGTGCTTCATT+GGG + Chr1:19387945-19387964 None:intergenic 50.0%
GCCCAAAAACACATGGTCTC+AGG - Chr1:19390640-19390659 MsG0180001320.01.T01:intron 50.0%
GTGCTTCATTGGGACAGAAC+AGG + Chr1:19387935-19387954 None:intergenic 50.0%
GTTCACAACATACGTGCCCA+TGG - Chr1:19387654-19387673 MsG0180001320.01.T01:three_prime_UTR 50.0%
TATCAGCATGTCATGGCTCC+AGG + Chr1:19387788-19387807 None:intergenic 50.0%
TGAAACAGAGGATACCCACG+TGG - Chr1:19390060-19390079 MsG0180001320.01.T01:intron 50.0%
TGCCAAACCAGGTGCTTCAT+TGG + Chr1:19387946-19387965 None:intergenic 50.0%
TTGCCAATGCTTGTCCCTTG+AGG + Chr1:19389367-19389386 None:intergenic 50.0%
TTTGATCCCTGACAAGGCTG+TGG - Chr1:19390519-19390538 MsG0180001320.01.T01:intron 50.0%
TTTGCACGGTCGCTTAGATG+CGG - Chr1:19389136-19389155 MsG0180001320.01.T01:intron 50.0%
! TCCCAATGAAGCACCTGGTT+TGG - Chr1:19387941-19387960 MsG0180001320.01.T01:CDS 50.0%
! TTCTGTCCCAATGAAGCACC+TGG - Chr1:19387936-19387955 MsG0180001320.01.T01:CDS 50.0%
!! AGAGTGCTGCTACACCTCAA+GGG - Chr1:19389350-19389369 MsG0180001320.01.T01:intron 50.0%
!! AGGTGCTTTTGCTGTGTACC+TGG - Chr1:19387767-19387786 MsG0180001320.01.T01:three_prime_UTR 50.0%
!! CACCTGGTTTGGCAGATTGT+TGG - Chr1:19387952-19387971 MsG0180001320.01.T01:CDS 50.0%
!! TGAGGATTGGAGGTACCTGT+TGG + Chr1:19391329-19391348 None:intergenic 50.0%
!! TTAGAAGCACTGGTGAGGAC+AGG - Chr1:19390129-19390148 MsG0180001320.01.T01:intron 50.0%
CCCTGTGAGCTTAGCTCAGT+TGG + Chr1:19388378-19388397 None:intergenic 55.0%
! ACCTTGAAACTGCTCTGGGC+AGG + Chr1:19390330-19390349 None:intergenic 55.0%
! CCTTGAAACTGCTCTGGGCA+GGG + Chr1:19390329-19390348 None:intergenic 55.0%
! GCATGTCCACAGCCTTGTCA+GGG + Chr1:19390528-19390547 None:intergenic 55.0%
! TGCATGTCCACAGCCTTGTC+AGG + Chr1:19390529-19390548 None:intergenic 55.0%
!! GAGAGTGCTGCTACACCTCA+AGG - Chr1:19389349-19389368 MsG0180001320.01.T01:intron 55.0%
CCCTGCCCAGAGCAGTTTCA+AGG - Chr1:19390326-19390345 MsG0180001320.01.T01:intron 60.0%
CTCTGGGCAGGGTTCCTTTG+TGG + Chr1:19390318-19390337 None:intergenic 60.0%
GGCAGGGTTCCTTTGTGGCT+GGG + Chr1:19390313-19390332 None:intergenic 60.0%
GGGCAGGGTTCCTTTGTGGC+TGG + Chr1:19390314-19390333 None:intergenic 65.0%
! GCACTGGTGAGGACAGGACG+TGG - Chr1:19390135-19390154 MsG0180001320.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 19387414 19391589 19387414 ID=MsG0180001320.01;Name=MsG0180001320.01
Chr1 mRNA 19387414 19391589 19387414 ID=MsG0180001320.01.T01;Parent=MsG0180001320.01;Name=MsG0180001320.01.T01;_AED=0.45;_eAED=0.45;_QI=0|0.6|0.83|0.83|0.6|0.83|6|448|512
Chr1 exon 19387414 19388104 19387414 ID=MsG0180001320.01.T01:exon:14355;Parent=MsG0180001320.01.T01
Chr1 exon 19388188 19388246 19388188 ID=MsG0180001320.01.T01:exon:14354;Parent=MsG0180001320.01.T01
Chr1 exon 19388656 19388935 19388656 ID=MsG0180001320.01.T01:exon:14353;Parent=MsG0180001320.01.T01
Chr1 exon 19389195 19389355 19389195 ID=MsG0180001320.01.T01:exon:14352;Parent=MsG0180001320.01.T01
Chr1 exon 19389576 19390005 19389576 ID=MsG0180001320.01.T01:exon:14351;Parent=MsG0180001320.01.T01
Chr1 exon 19391224 19391589 19391224 ID=MsG0180001320.01.T01:exon:14350;Parent=MsG0180001320.01.T01
Chr1 CDS 19391224 19391589 19391224 ID=MsG0180001320.01.T01:cds;Parent=MsG0180001320.01.T01
Chr1 CDS 19389576 19390005 19389576 ID=MsG0180001320.01.T01:cds;Parent=MsG0180001320.01.T01
Chr1 CDS 19389195 19389355 19389195 ID=MsG0180001320.01.T01:cds;Parent=MsG0180001320.01.T01
Chr1 CDS 19388656 19388935 19388656 ID=MsG0180001320.01.T01:cds;Parent=MsG0180001320.01.T01
Chr1 CDS 19388188 19388246 19388188 ID=MsG0180001320.01.T01:cds;Parent=MsG0180001320.01.T01
Chr1 CDS 19387862 19388104 19387862 ID=MsG0180001320.01.T01:cds;Parent=MsG0180001320.01.T01
Chr1 three_prime_UTR 19387414 19387861 19387414 ID=MsG0180001320.01.T01:three_prime_utr;Parent=MsG0180001320.01.T01
Gene Sequence

>MsG0180001320.01.T01

ATGAGGGTTTCTGTTGGAATTCACAAGGATGATGTTGAATCTGCTGTCAAAACTTATCATTTCATGTCTCAGAGATGGTTCACTCATGCTTCTCCTACACTTTTCAACGCTGGAACACCTAGGCCTCAGTTGAGTAGTTGCTTCTTAGTGTGCATGAAAGAGGATAGTATTGAGGGGATTTATGATACATTGAAGGAGTGTGCTGTCATTAGTAAATGTGCTGGAGGGATTGGTGTTTCTGTTCACAACATACGTGCCCATGGTAGTTACATTCAGGGAACAAATGGAACGTCTAATGGTATTGTTCCAATGCTGCGTGTGTTCAATCATACTGCATGTTATGTTGATCAGAAAGGTGCTTTTGCTATGATTCCAAGGAGTTTTGTAGAGAGATATTGGAAAGATGTGCCAAATCCAACATTCCTTAAACTTCCAAATGGGTCTGTGTGCAAAATGAATTGGGTGCAATGCGGTTATGATATTTGGCTTTTGAATTGGAAAAGATTTGCACGGTCGCTTAGATGCGGTGATCTTTTAGTTTTCCAGTACAAAGGAGGGTCAGATTTTCATGTCATTATATTAGATGATAGTAAATTAGAAATTGACTATTCAAGCATCACATGCAACGATGACCACGACACTAGCAAACAATATTGTAGTACCAATGACAGTGAAATTACCGAACAACCCCTGAAAAAAAAGAAAATCAACACAAATGAGAGTGCTGCTACACCTCAAGGGACAAGCATTGGCAAGAGAAAATATCAAATGAATGCAACCCAGCAAAAAGTCTCAGAGGCTAATAGAAACAATGGAGACAGGGATAAGAAAGCTAAGAAATGCACAAAAACTAAAGATGGGAATGAGAGAAGTTACACAAATTCTCATCCCAATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTTATGTGGAAGGTGATAGATTAAAATTGAGGATACCCACGTGGTTTTCGAAAGAATACATGAGTGAGCTGTTGCAAGGGAATGCAATGATTAGAAGCACTGGTGAGGACAGGACGTGGTATGTGACGTTAAAATTTGATGAACGCAATAATAACTTTGAAATTACAGCTGGTTGGAAGTCATTTTTAAAGGAACATGACTTGCAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGCGAACCACTTTCATTCACAATTACTATTATCCCAGCCACAAAGGAACCCTGCCCAGAGCAGTTTCAAGATTCTGTAAGTCCGAATTTACATGACCAATTCAAGGTTTTTGTAACATCATTAGACAAGTTGGTTGTACTACCAAGTGAGCTGTTAAAAAGACATAATATATTTAGTGGAAATTCGGTGGAGTTGAAAATAGGAGAAGGAACATGGTTTGTAGATGTGAGTTATAATGAACATCTCGACTATGGATGGTTCACTAAAGGCTGGCAAGAATTTGTGAGAGATTGTAAAGTAAAGACCGGAGACACTTGCTTGTTTGAGACGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGA
Protein sequence

>MsG0180001320.01.T01

MRVSVGIHKDDVESAVKTYHFMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKEDSIEGIYDTLKECAVISKCAGGIGVSVHNIRAHGSYIQGTNGTSNGIVPMLRVFNHTACYVDQKGAFAMIPRSFVERYWKDVPNPTFLKLPNGSVCKMNWVQCGYDIWLLNWKRFARSLRCGDLLVFQYKGGSDFHVIILDDSKLEIDYSSITCNDDHDTSKQYCSTNDSEITEQPLKKKKINTNESAATPQGTSIGKRKYQMNATQQKVSEANRNNGDRDKKAKKCTKTKDGNERSYTNSHPNENPNFTLKLSRSYVEGDRLKLRIPTWFSKEYMSELLQGNAMIRSTGEDRTWYVTLKFDERNNNFEITAGWKSFLKEHDLQVGDVCKFEMTQREPLSFTITIIPATKEPCPEQFQDSVSPNLHDQFKVFVTSLDKLVVLPSELLKRHNIFSGNSVELKIGEGTWFVDVSYNEHLDYGWFTKGWQEFVRDCKVKTGDTCLFETIDVQNHVFKVSIV*