Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001327.01.T01 | RHN78227.1 | 84.273 | 337 | 27 | 3 | 1 | 337 | 1 | 311 | 0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001327.01.T01 | Q84R27 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 3.73E-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001327.01.T01 | A0A396JU70 | 84.273 | 337 | 27 | 3 | 1 | 337 | 1 | 311 | 0.0 | 528 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180001327.01.T01 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001327.01.T01 | MTR_4g119990 | 63.478 | 345 | 103 | 7 | 1 | 336 | 1 | 331 | 7.25e-144 | 412 |
| MsG0180001327.01.T01 | MTR_6g043890 | 64.013 | 314 | 90 | 6 | 1 | 308 | 1 | 297 | 8.07e-132 | 380 |
| MsG0180001327.01.T01 | MTR_1g035440 | 61.317 | 243 | 77 | 4 | 1 | 226 | 1 | 243 | 1.95e-81 | 248 |
| MsG0180001327.01.T01 | MTR_5g044670 | 31.776 | 321 | 168 | 14 | 1 | 302 | 1 | 289 | 1.01e-30 | 119 |
| MsG0180001327.01.T01 | MTR_3g098790 | 29.430 | 316 | 191 | 8 | 9 | 316 | 7 | 298 | 3.21e-30 | 117 |
| MsG0180001327.01.T01 | MTR_1g108780 | 27.397 | 292 | 201 | 7 | 31 | 321 | 13 | 294 | 7.32e-30 | 119 |
| MsG0180001327.01.T01 | MTR_1g035460 | 29.180 | 305 | 195 | 8 | 31 | 325 | 2 | 295 | 4.31e-29 | 115 |
| MsG0180001327.01.T01 | MTR_7g050720 | 28.395 | 324 | 195 | 9 | 13 | 316 | 8 | 314 | 9.75e-29 | 113 |
| MsG0180001327.01.T01 | MTR_3g061370 | 27.586 | 319 | 180 | 10 | 9 | 316 | 3 | 281 | 3.72e-28 | 111 |
| MsG0180001327.01.T01 | MTR_7g050710 | 28.660 | 321 | 160 | 10 | 13 | 302 | 11 | 293 | 6.90e-28 | 111 |
| MsG0180001327.01.T01 | MTR_6g061070 | 26.727 | 333 | 220 | 11 | 9 | 328 | 12 | 333 | 8.43e-28 | 113 |
| MsG0180001327.01.T01 | MTR_7g050560 | 28.378 | 296 | 176 | 7 | 13 | 302 | 11 | 276 | 8.58e-28 | 110 |
| MsG0180001327.01.T01 | MTR_8g103940 | 26.582 | 316 | 216 | 9 | 13 | 325 | 37 | 339 | 1.30e-27 | 113 |
| MsG0180001327.01.T01 | MTR_3g061350 | 27.302 | 315 | 178 | 10 | 13 | 316 | 10 | 284 | 4.72e-27 | 108 |
| MsG0180001327.01.T01 | MTR_3g061320 | 27.707 | 314 | 173 | 11 | 13 | 316 | 10 | 279 | 1.60e-26 | 106 |
| MsG0180001327.01.T01 | MTR_1g035570 | 28.852 | 305 | 175 | 8 | 24 | 310 | 14 | 294 | 3.32e-26 | 108 |
| MsG0180001327.01.T01 | MTR_3g061310 | 28.435 | 313 | 178 | 10 | 13 | 316 | 10 | 285 | 9.95e-26 | 104 |
| MsG0180001327.01.T01 | MTR_1g035640 | 27.245 | 323 | 199 | 10 | 24 | 341 | 14 | 305 | 2.01e-25 | 106 |
| MsG0180001327.01.T01 | MTR_7g050580 | 28.620 | 297 | 174 | 7 | 13 | 302 | 11 | 276 | 3.01e-25 | 103 |
| MsG0180001327.01.T01 | MTR_3g061340 | 28.289 | 304 | 162 | 12 | 15 | 309 | 12 | 268 | 4.15e-25 | 102 |
| MsG0180001327.01.T01 | MTR_3g061330 | 26.792 | 265 | 150 | 8 | 13 | 271 | 10 | 236 | 2.13e-22 | 94.7 |
| MsG0180001327.01.T01 | MTR_1g033740 | 33.862 | 189 | 90 | 8 | 1 | 167 | 1 | 176 | 6.45e-22 | 92.0 |
| MsG0180001327.01.T01 | MTR_1g035620 | 27.483 | 302 | 164 | 9 | 15 | 304 | 9 | 267 | 4.83e-21 | 93.6 |
| MsG0180001327.01.T01 | MTR_1g035480 | 33.702 | 181 | 94 | 7 | 1 | 167 | 1 | 169 | 6.28e-21 | 89.0 |
| MsG0180001327.01.T01 | MTR_3g061290 | 38.000 | 150 | 81 | 7 | 13 | 153 | 10 | 156 | 1.95e-20 | 88.2 |
| MsG0180001327.01.T01 | MTR_7g050590 | 27.835 | 291 | 165 | 9 | 31 | 302 | 2 | 266 | 3.55e-20 | 89.7 |
| MsG0180001327.01.T01 | MTR_3g005490 | 27.331 | 311 | 146 | 11 | 14 | 316 | 20 | 258 | 2.10e-19 | 87.0 |
| MsG0180001327.01.T01 | MTR_1g035500 | 33.136 | 169 | 90 | 6 | 9 | 165 | 19 | 176 | 2.70e-19 | 84.7 |
| MsG0180001327.01.T01 | MTR_1g050845 | 27.027 | 296 | 161 | 8 | 15 | 304 | 9 | 255 | 5.95e-19 | 88.6 |
| MsG0180001327.01.T01 | MTR_1g035510 | 28.936 | 235 | 121 | 9 | 31 | 251 | 2 | 204 | 1.70e-18 | 83.6 |
| MsG0180001327.01.T01 | MTR_3g005480 | 25.000 | 292 | 151 | 7 | 14 | 302 | 20 | 246 | 5.45e-17 | 80.1 |
| MsG0180001327.01.T01 | MTR_5g070440 | 27.393 | 303 | 165 | 10 | 14 | 316 | 20 | 267 | 3.51e-16 | 77.8 |
| MsG0180001327.01.T01 | MTR_1g035470 | 40.625 | 96 | 53 | 3 | 31 | 126 | 2 | 93 | 1.18e-15 | 73.6 |
| MsG0180001327.01.T01 | MTR_1g021380 | 27.848 | 316 | 185 | 12 | 13 | 302 | 20 | 318 | 1.90e-15 | 76.6 |
| MsG0180001327.01.T01 | MTR_1g035650 | 30.464 | 151 | 98 | 3 | 15 | 165 | 9 | 152 | 2.98e-14 | 71.2 |
| MsG0180001327.01.T01 | MTR_3g005495 | 30.636 | 173 | 106 | 4 | 14 | 175 | 242 | 411 | 5.18e-14 | 73.2 |
| MsG0180001327.01.T01 | MTR_1g021360 | 26.316 | 304 | 157 | 13 | 26 | 302 | 193 | 456 | 5.23e-14 | 73.2 |
| MsG0180001327.01.T01 | MTR_3g005460 | 24.915 | 293 | 168 | 9 | 13 | 302 | 260 | 503 | 4.41e-13 | 70.5 |
| MsG0180001327.01.T01 | MTR_3g005460 | 22.973 | 370 | 234 | 13 | 2 | 330 | 12 | 371 | 9.77e-12 | 66.2 |
| MsG0180001327.01.T01 | MTR_1g021400 | 23.939 | 330 | 192 | 11 | 13 | 302 | 28 | 338 | 6.01e-12 | 66.6 |
| MsG0180001327.01.T01 | MTR_3g061220 | 30.909 | 110 | 60 | 2 | 13 | 122 | 10 | 103 | 2.72e-11 | 60.5 |
| MsG0180001327.01.T01 | MTR_3g005420 | 23.453 | 307 | 172 | 10 | 14 | 316 | 288 | 535 | 5.75e-11 | 63.9 |
| MsG0180001327.01.T01 | MTR_4g068320 | 35.135 | 111 | 69 | 2 | 15 | 123 | 6 | 115 | 9.65e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001327.01.T01 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 3.81e-14 | 70.9 |
| MsG0180001327.01.T01 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 3.94e-14 | 70.5 |
| MsG0180001327.01.T01 | AT1G49475 | 36.036 | 111 | 69 | 2 | 15 | 125 | 34 | 142 | 1.07e-13 | 69.3 |
| MsG0180001327.01.T01 | AT4G01580 | 31.532 | 111 | 75 | 1 | 5 | 115 | 20 | 129 | 4.38e-13 | 67.4 |
Find 33 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1:+19507251 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1:-19507166 | MsG0180001327.01.T01:CDS |
| TTTGGAAACCTTAGAGTAAC+TGG | 0.248158 | 1:+19508395 | None:intergenic |
| TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1:+19507055 | None:intergenic |
| CTTCATCATCACGCGGTAAA+AGG | 0.264439 | 1:-19508124 | MsG0180001327.01.T01:CDS |
| CTCTTTAATGTGATTGTATT+CGG | 0.267780 | 1:-19508236 | MsG0180001327.01.T01:CDS |
| TACTCTAAGGTTTCCAAACT+TGG | 0.337891 | 1:-19508390 | MsG0180001327.01.T01:CDS |
| AAGTAGCTGTAATGATATTA+AGG | 0.342032 | 1:-19507864 | MsG0180001327.01.T01:CDS |
| TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1:-19508403 | MsG0180001327.01.T01:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1:+19507170 | None:intergenic |
| ATCAACTCGAATGAACAAAA+AGG | 0.376629 | 1:-19508056 | MsG0180001327.01.T01:CDS |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1:+19507100 | None:intergenic |
| TGTTTCTTGACAAATTCATT+TGG | 0.414955 | 1:+19507307 | None:intergenic |
| TCTTCACTAGTTTCTCTTGA+AGG | 0.416839 | 1:+19508188 | None:intergenic |
| TGAATTTGTCAAGAAACATA+TGG | 0.468376 | 1:-19507302 | MsG0180001327.01.T01:CDS |
| ATACATTGATAGAGATCTCT+TGG | 0.475972 | 1:-19507759 | MsG0180001327.01.T01:intron |
| TCTAAGGTTTCCAAACTTGG+TGG | 0.476134 | 1:-19508387 | MsG0180001327.01.T01:CDS |
| CACACTTTCATAGACGGTGC+TGG | 0.484435 | 1:+19508092 | None:intergenic |
| CTTCACTAGTTTCTCTTGAA+GGG | 0.485568 | 1:+19508189 | None:intergenic |
| CAAGAAACATATGGACATGA+TGG | 0.508763 | 1:-19507293 | MsG0180001327.01.T01:CDS |
| TATATTTGATTAGTGTCCAT+CGG | 0.520813 | 1:-19507036 | MsG0180001327.01.T01:CDS |
| TTCTTACACACTTTCATAGA+CGG | 0.530584 | 1:+19508086 | None:intergenic |
| TTGAGCATGTGAACAATGGT+TGG | 0.536551 | 1:-19507992 | MsG0180001327.01.T01:CDS |
| TATATTAAATGAATTTCCGA+TGG | 0.539775 | 1:+19507020 | None:intergenic |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1:-19508428 | MsG0180001327.01.T01:CDS |
| GAACATGATCATCAGAGTAA+TGG | 0.556374 | 1:-19508922 | MsG0180001327.01.T01:CDS |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1:-19507201 | MsG0180001327.01.T01:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1:-19507205 | MsG0180001327.01.T01:CDS |
| TTGGAAACCTTAGAGTAACT+GGG | 0.594864 | 1:+19508396 | None:intergenic |
| AAACATATGGACATGATGGA+AGG | 0.599445 | 1:-19507289 | MsG0180001327.01.T01:CDS |
| GTGATTGTATTCGGTAAATG+CGG | 0.620340 | 1:-19508227 | MsG0180001327.01.T01:CDS |
| AAGGATCTAAGCATGAGAAG+AGG | 0.639289 | 1:-19508037 | MsG0180001327.01.T01:CDS |
| GAGAATCCTTCATCATCACG+CGG | 0.748401 | 1:-19508131 | MsG0180001327.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTGTCTTATTTTAT+AGG | - | Chr1:19508024-19508043 | MsG0180001327.01.T01:CDS | 10.0% |
| !! | AATATAAAAAAGTCTCATTA+TGG | + | Chr1:19508414-19508433 | None:intergenic | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | + | Chr1:19508906-19508925 | None:intergenic | 15.0% |
| !!! | TGAAATTATTAATCTAAAAC+AGG | - | Chr1:19508623-19508642 | MsG0180001327.01.T01:intron | 15.0% |
| !! | AAAATGTGATCTTATGATAT+TGG | - | Chr1:19507306-19507325 | MsG0180001327.01.T01:CDS | 20.0% |
| !! | AATAGTGATTGTTCAAATAT+AGG | - | Chr1:19507350-19507369 | MsG0180001327.01.T01:intron | 20.0% |
| !! | AGAAAAACAATTTCTTCATT+AGG | + | Chr1:19507258-19507277 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | + | Chr1:19508710-19508729 | None:intergenic | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | + | Chr1:19508791-19508810 | None:intergenic | 20.0% |
| !! | CAAATATGCATTACAAAATT+TGG | - | Chr1:19507154-19507173 | MsG0180001327.01.T01:CDS | 20.0% |
| !! | GAAAAACAATTTCTTCATTA+GGG | + | Chr1:19507257-19507276 | None:intergenic | 20.0% |
| !! | TTCAAGATAAAGTAGTTAAA+TGG | + | Chr1:19508607-19508626 | None:intergenic | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | + | Chr1:19508709-19508728 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | - | Chr1:19508792-19508811 | MsG0180001327.01.T01:intron | 20.0% |
| !!! | TAAAATGTATGTGTATTGAT+AGG | - | Chr1:19508569-19508588 | MsG0180001327.01.T01:intron | 20.0% |
| !!! | TGATCACTTTTATTTTTGAA+AGG | - | Chr1:19508239-19508258 | MsG0180001327.01.T01:CDS | 20.0% |
| !!! | TGTTGCTACTAATTTTTTTT+TGG | - | Chr1:19508047-19508066 | MsG0180001327.01.T01:CDS | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | - | Chr1:19508709-19508728 | MsG0180001327.01.T01:intron | 20.0% |
| ! | AAGTAGCTGTAATGATATTA+AGG | - | Chr1:19508094-19508113 | MsG0180001327.01.T01:CDS | 25.0% |
| ! | AGTCTCATTATGGTATAATT+TGG | + | Chr1:19508404-19508423 | None:intergenic | 25.0% |
| ! | CAAAAAATTTCTTCACTTTC+TGG | + | Chr1:19508139-19508158 | None:intergenic | 25.0% |
| ! | CTATTCTTTGATGAGATTAA+TGG | - | Chr1:19508345-19508364 | MsG0180001327.01.T01:CDS | 25.0% |
| ! | CTCTTTAATGTGATTGTATT+CGG | - | Chr1:19507722-19507741 | MsG0180001327.01.T01:intron | 25.0% |
| ! | GAAGAATAACCTTAAAAAAG+TGG | + | Chr1:19507065-19507084 | None:intergenic | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | + | Chr1:19508861-19508880 | None:intergenic | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | - | Chr1:19508922-19508941 | MsG0180001327.01.T01:CDS | 25.0% |
| ! | TGAATTTGTCAAGAAACATA+TGG | - | Chr1:19508656-19508675 | MsG0180001327.01.T01:intron | 25.0% |
| ! | TGCATATTGTGAAAAATCAA+GGG | + | Chr1:19507136-19507155 | None:intergenic | 25.0% |
| ! | TGTTTCTTGACAAATTCATT+TGG | + | Chr1:19508654-19508673 | None:intergenic | 25.0% |
| ! | TTGCATATTGTGAAAAATCA+AGG | + | Chr1:19507137-19507156 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | + | Chr1:19507525-19507544 | None:intergenic | 25.0% |
| !! | TACCAATTTTTCTTCTTGAA+GGG | + | Chr1:19507094-19507113 | None:intergenic | 25.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | + | Chr1:19507524-19507543 | None:intergenic | 25.0% |
| !! | TATGATGTTACATTTTGCAA+TGG | - | Chr1:19507626-19507645 | MsG0180001327.01.T01:intron | 25.0% |
| !! | TTACCAATTTTTCTTCTTGA+AGG | + | Chr1:19507095-19507114 | None:intergenic | 25.0% |
| !! | TTTGAATGAATCGCAATTTT+TGG | - | Chr1:19507676-19507695 | MsG0180001327.01.T01:intron | 25.0% |
| !!! | GAATTCTCAATTTTTTTAGC+AGG | - | Chr1:19508071-19508090 | MsG0180001327.01.T01:CDS | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | - | Chr1:19507525-19507544 | MsG0180001327.01.T01:intron | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | - | Chr1:19508863-19508882 | MsG0180001327.01.T01:intron | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | - | Chr1:19508869-19508888 | MsG0180001327.01.T01:intron | 25.0% |
| !!! | TTGAAAACTCCTTATTTTGA+AGG | - | Chr1:19508894-19508913 | MsG0180001327.01.T01:CDS | 25.0% |
| AGTGATTGTTCAAATATAGG+TGG | - | Chr1:19507353-19507372 | MsG0180001327.01.T01:intron | 30.0% | |
| ATACATTGATAGAGATCTCT+TGG | - | Chr1:19508199-19508218 | MsG0180001327.01.T01:CDS | 30.0% | |
| ATCAACTCGAATGAACAAAA+AGG | - | Chr1:19507902-19507921 | MsG0180001327.01.T01:intron | 30.0% | |
| CCAATCACAATCTATTATGT+AGG | + | Chr1:19508461-19508480 | None:intergenic | 30.0% | |
| CCTACATAATAGATTGTGAT+TGG | - | Chr1:19508458-19508477 | MsG0180001327.01.T01:intron | 30.0% | |
| TACCCTTCAAGAAGAAAAAT+TGG | - | Chr1:19507089-19507108 | MsG0180001327.01.T01:CDS | 30.0% | |
| TTCTTACACACTTTCATAGA+CGG | + | Chr1:19507875-19507894 | None:intergenic | 30.0% | |
| ! | ATGTTACATTTTGCAATGGT+TGG | - | Chr1:19507630-19507649 | MsG0180001327.01.T01:intron | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | - | Chr1:19508822-19508841 | MsG0180001327.01.T01:intron | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | - | Chr1:19507530-19507549 | MsG0180001327.01.T01:intron | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | - | Chr1:19507589-19507608 | MsG0180001327.01.T01:intron | 30.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | - | Chr1:19507053-19507072 | MsG0180001327.01.T01:CDS | 30.0% |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | - | Chr1:19507588-19507607 | MsG0180001327.01.T01:intron | 30.0% |
| AAACAATCTGCACTAACTTG+TGG | - | Chr1:19508753-19508772 | MsG0180001327.01.T01:intron | 35.0% | |
| CAAGAAACATATGGACATGA+TGG | - | Chr1:19508665-19508684 | MsG0180001327.01.T01:intron | 35.0% | |
| GAACATGATCATCAGAGTAA+TGG | - | Chr1:19507036-19507055 | MsG0180001327.01.T01:CDS | 35.0% | |
| GTGATTGTATTCGGTAAATG+CGG | - | Chr1:19507731-19507750 | MsG0180001327.01.T01:intron | 35.0% | |
| TAACAAACCCAGTTACTCTA+AGG | - | Chr1:19507555-19507574 | MsG0180001327.01.T01:intron | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | + | Chr1:19507565-19507584 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | + | Chr1:19507566-19507585 | None:intergenic | 35.0% | |
| ! | AAACATATGGACATGATGGA+AGG | - | Chr1:19508669-19508688 | MsG0180001327.01.T01:intron | 35.0% |
| ! | ACTTTCTTTTCCACCAAGTT+TGG | + | Chr1:19507584-19507603 | None:intergenic | 35.0% |
| ! | CTTCACTAGTTTCTCTTGAA+GGG | + | Chr1:19507772-19507791 | None:intergenic | 35.0% |
| ! | TCTTCACTAGTTTCTCTTGA+AGG | + | Chr1:19507773-19507792 | None:intergenic | 35.0% |
| !! | GTTTTTGAGCATGTGAACAA+TGG | - | Chr1:19507962-19507981 | MsG0180001327.01.T01:intron | 35.0% |
| !! | TACTCTAAGGTTTCCAAACT+TGG | - | Chr1:19507568-19507587 | MsG0180001327.01.T01:intron | 35.0% |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | - | Chr1:19507519-19507538 | MsG0180001327.01.T01:intron | 35.0% |
| AAGGATCTAAGCATGAGAAG+AGG | - | Chr1:19507921-19507940 | MsG0180001327.01.T01:intron | 40.0% | |
| TTGAGCATGTGAACAATGGT+TGG | - | Chr1:19507966-19507985 | MsG0180001327.01.T01:intron | 40.0% | |
| ! | AATCTGCACTAACTTGTGGT+TGG | - | Chr1:19508757-19508776 | MsG0180001327.01.T01:intron | 40.0% |
| ! | TCTAAGGTTTCCAAACTTGG+TGG | - | Chr1:19507571-19507590 | MsG0180001327.01.T01:intron | 40.0% |
| ATTAGGGCTGCATCCAACAA+AGG | + | Chr1:19507241-19507260 | None:intergenic | 45.0% | |
| CTTCATCATCACGCGGTAAA+AGG | - | Chr1:19507834-19507853 | MsG0180001327.01.T01:CDS | 45.0% | |
| GAGAATCCTTCATCATCACG+CGG | - | Chr1:19507827-19507846 | MsG0180001327.01.T01:CDS | 45.0% | |
| ! | CATCCAACAAAGGCTAGCTA+GGG | + | Chr1:19507231-19507250 | None:intergenic | 45.0% |
| !! | CTTTTACCGCGTGATGATGA+AGG | + | Chr1:19507836-19507855 | None:intergenic | 45.0% |
| CACACTTTCATAGACGGTGC+TGG | + | Chr1:19507869-19507888 | None:intergenic | 50.0% | |
| ! | GCATCCAACAAAGGCTAGCT+AGG | + | Chr1:19507232-19507251 | None:intergenic | 50.0% |
| !! | CATCCCTAGCTAGCCTTTGT+TGG | - | Chr1:19507225-19507244 | MsG0180001327.01.T01:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 19507024 | 19508956 | 19507024 | ID=MsG0180001327.01;Name=MsG0180001327.01 |
| Chr1 | mRNA | 19507024 | 19508956 | 19507024 | ID=MsG0180001327.01.T01;Parent=MsG0180001327.01;Name=MsG0180001327.01.T01;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0.33|0.25|4|0|341 |
| Chr1 | exon | 19508870 | 19508956 | 19508870 | ID=MsG0180001327.01.T01:exon:25922;Parent=MsG0180001327.01.T01 |
| Chr1 | exon | 19507970 | 19508465 | 19507970 | ID=MsG0180001327.01.T01:exon:25921;Parent=MsG0180001327.01.T01 |
| Chr1 | exon | 19507760 | 19507890 | 19507760 | ID=MsG0180001327.01.T01:exon:25920;Parent=MsG0180001327.01.T01 |
| Chr1 | exon | 19507024 | 19507335 | 19507024 | ID=MsG0180001327.01.T01:exon:25919;Parent=MsG0180001327.01.T01 |
| Chr1 | CDS | 19508870 | 19508956 | 19508870 | ID=MsG0180001327.01.T01:cds;Parent=MsG0180001327.01.T01 |
| Chr1 | CDS | 19507970 | 19508465 | 19507970 | ID=MsG0180001327.01.T01:cds;Parent=MsG0180001327.01.T01 |
| Chr1 | CDS | 19507760 | 19507890 | 19507760 | ID=MsG0180001327.01.T01:cds;Parent=MsG0180001327.01.T01 |
| Chr1 | CDS | 19507024 | 19507335 | 19507024 | ID=MsG0180001327.01.T01:cds;Parent=MsG0180001327.01.T01 |
| Gene Sequence |
| Protein sequence |
