Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001328.01.T01 | KEH40807.1 | 84.988 | 433 | 46 | 3 | 1 | 433 | 1 | 414 | 0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001328.01.T01 | A0A072VG97 | 84.988 | 433 | 46 | 3 | 1 | 433 | 1 | 414 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180001328.01.T01 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001328.01.T01 | MTR_1g035620 | 84.988 | 433 | 46 | 3 | 1 | 433 | 1 | 414 | 0.0 | 748 |
| MsG0180001328.01.T01 | MTR_1g050845 | 78.535 | 396 | 52 | 5 | 1 | 395 | 1 | 364 | 0.0 | 603 |
| MsG0180001328.01.T01 | MTR_1g035570 | 42.729 | 447 | 182 | 11 | 1 | 427 | 1 | 393 | 1.21e-107 | 324 |
| MsG0180001328.01.T01 | MTR_1g035640 | 39.279 | 499 | 195 | 14 | 1 | 427 | 1 | 463 | 5.92e-97 | 298 |
| MsG0180001328.01.T01 | MTR_1g035650 | 54.067 | 209 | 77 | 4 | 1 | 196 | 1 | 203 | 6.75e-66 | 210 |
| MsG0180001328.01.T01 | MTR_6g061070 | 34.783 | 460 | 251 | 12 | 9 | 427 | 18 | 469 | 9.41e-66 | 218 |
| MsG0180001328.01.T01 | MTR_1g035490 | 41.554 | 296 | 140 | 10 | 139 | 427 | 58 | 327 | 6.46e-59 | 196 |
| MsG0180001328.01.T01 | MTR_5g044670 | 31.561 | 301 | 178 | 8 | 3 | 281 | 10 | 304 | 5.11e-33 | 127 |
| MsG0180001328.01.T01 | MTR_1g033740 | 42.331 | 163 | 73 | 4 | 9 | 156 | 22 | 178 | 6.98e-33 | 123 |
| MsG0180001328.01.T01 | MTR_3g098790 | 30.241 | 291 | 182 | 8 | 6 | 278 | 10 | 297 | 2.09e-32 | 125 |
| MsG0180001328.01.T01 | MTR_7g050710 | 30.363 | 303 | 174 | 9 | 6 | 278 | 10 | 305 | 2.78e-32 | 125 |
| MsG0180001328.01.T01 | MTR_8g103940 | 23.480 | 477 | 289 | 13 | 9 | 429 | 39 | 495 | 9.78e-32 | 127 |
| MsG0180001328.01.T01 | MTR_7g050580 | 29.932 | 294 | 170 | 9 | 6 | 278 | 10 | 288 | 1.57e-29 | 117 |
| MsG0180001328.01.T01 | MTR_7g050560 | 29.392 | 296 | 169 | 11 | 6 | 278 | 10 | 288 | 2.02e-27 | 111 |
| MsG0180001328.01.T01 | MTR_1g035480 | 39.306 | 173 | 83 | 6 | 2 | 156 | 3 | 171 | 3.62e-27 | 107 |
| MsG0180001328.01.T01 | MTR_6g043890 | 28.772 | 285 | 168 | 8 | 9 | 266 | 15 | 291 | 6.09e-27 | 110 |
| MsG0180001328.01.T01 | MTR_1g035500 | 36.810 | 163 | 91 | 4 | 5 | 156 | 21 | 182 | 2.79e-26 | 105 |
| MsG0180001328.01.T01 | MTR_1g108780 | 23.276 | 464 | 281 | 13 | 24 | 429 | 12 | 458 | 1.08e-25 | 108 |
| MsG0180001328.01.T01 | MTR_7g050720 | 29.032 | 310 | 174 | 11 | 6 | 277 | 7 | 308 | 2.25e-25 | 105 |
| MsG0180001328.01.T01 | MTR_4g119990 | 26.299 | 308 | 177 | 10 | 9 | 278 | 15 | 310 | 2.33e-22 | 98.6 |
| MsG0180001328.01.T01 | MTR_1g035510 | 39.286 | 140 | 75 | 4 | 25 | 155 | 2 | 140 | 2.57e-22 | 95.1 |
| MsG0180001328.01.T01 | MTR_1g035510 | 45.977 | 87 | 45 | 2 | 296 | 381 | 137 | 222 | 3.82e-15 | 74.7 |
| MsG0180001328.01.T01 | MTR_1g035520 | 27.124 | 306 | 160 | 10 | 25 | 278 | 88 | 382 | 3.23e-22 | 98.2 |
| MsG0180001328.01.T01 | MTR_7g050590 | 27.622 | 286 | 166 | 8 | 25 | 278 | 2 | 278 | 5.00e-22 | 96.3 |
| MsG0180001328.01.T01 | MTR_3g061310 | 24.232 | 293 | 185 | 9 | 6 | 278 | 9 | 284 | 5.08e-21 | 92.8 |
| MsG0180001328.01.T01 | MTR_1g035470 | 43.434 | 99 | 55 | 1 | 25 | 123 | 2 | 99 | 3.66e-20 | 86.7 |
| MsG0180001328.01.T01 | MTR_3g061320 | 25.087 | 287 | 184 | 10 | 6 | 278 | 9 | 278 | 3.73e-20 | 90.5 |
| MsG0180001328.01.T01 | MTR_3g061370 | 24.825 | 286 | 185 | 8 | 9 | 278 | 9 | 280 | 7.34e-19 | 86.7 |
| MsG0180001328.01.T01 | MTR_3g061290 | 32.370 | 173 | 105 | 5 | 6 | 174 | 9 | 173 | 1.91e-18 | 83.6 |
| MsG0180001328.01.T01 | MTR_3g061340 | 25.352 | 284 | 182 | 9 | 6 | 278 | 9 | 273 | 5.69e-18 | 84.0 |
| MsG0180001328.01.T01 | MTR_3g061350 | 23.675 | 283 | 198 | 7 | 6 | 278 | 9 | 283 | 5.73e-18 | 84.3 |
| MsG0180001328.01.T01 | MTR_3g061330 | 26.699 | 206 | 140 | 4 | 6 | 202 | 9 | 212 | 1.29e-17 | 82.4 |
| MsG0180001328.01.T01 | MTR_1g035460 | 24.830 | 294 | 171 | 9 | 25 | 278 | 2 | 285 | 9.91e-17 | 82.0 |
| MsG0180001328.01.T01 | MTR_1g035440 | 38.000 | 100 | 59 | 2 | 9 | 105 | 15 | 114 | 5.44e-14 | 72.0 |
| MsG0180001328.01.T01 | MTR_7g050640 | 38.462 | 91 | 54 | 1 | 8 | 96 | 12 | 102 | 1.57e-13 | 67.4 |
| MsG0180001328.01.T01 | MTR_3g005480 | 22.340 | 282 | 167 | 8 | 7 | 278 | 19 | 258 | 2.17e-12 | 67.4 |
| MsG0180001328.01.T01 | MTR_3g005490 | 23.022 | 278 | 177 | 7 | 9 | 284 | 21 | 263 | 4.23e-12 | 66.6 |
| MsG0180001328.01.T01 | MTR_5g070440 | 22.491 | 289 | 188 | 9 | 1 | 281 | 9 | 269 | 5.34e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001328.01.T01 | AT1G49475 | 32.479 | 117 | 72 | 3 | 9 | 123 | 34 | 145 | 7.71e-11 | 61.6 |
Find 66 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGCAGATGACCCTTTA+AGG | 0.106528 | 1:+19520801 | None:intergenic |
| AATATCTTAACCTTAAAATA+TGG | 0.178478 | 1:+19521474 | None:intergenic |
| TCTATTGTGATGATAATATT+TGG | 0.179330 | 1:-19520458 | MsG0180001328.01.T01:CDS |
| GTGCTCAAAAGGAAATATTT+TGG | 0.198072 | 1:-19521596 | MsG0180001328.01.T01:CDS |
| TGCAGGTTGGCATAAATTTA+AGG | 0.202920 | 1:-19519742 | MsG0180001328.01.T01:CDS |
| TTACGCTCATGGCTATATTT+TGG | 0.211055 | 1:-19521059 | MsG0180001328.01.T01:intron |
| AGAAATTTGTGGAGAAATAT+TGG | 0.241294 | 1:-19521659 | MsG0180001328.01.T01:CDS |
| ATGTTTGGTTTAAGAGAAAT+TGG | 0.245872 | 1:-19521557 | MsG0180001328.01.T01:CDS |
| TTTGGGAGTCTAAGAATTAC+TGG | 0.267570 | 1:+19521621 | None:intergenic |
| TATTTGAATGACAACCTTAA+AGG | 0.276541 | 1:-19520815 | MsG0180001328.01.T01:CDS |
| AGTCTAAGAATTACTGGATT+TGG | 0.299817 | 1:+19521627 | None:intergenic |
| ACTATCTTCAAGAACTCTTC+TGG | 0.314590 | 1:+19521949 | None:intergenic |
| ATATTTCTCCACAAATTTCT+TGG | 0.318034 | 1:+19521662 | None:intergenic |
| ACAAAGGAGGCATAATTAAG+AGG | 0.349731 | 1:-19521156 | MsG0180001328.01.T01:CDS |
| AACTTCACCTCCACTTTCAT+AGG | 0.353581 | 1:+19520758 | None:intergenic |
| ATTTGAATGACAACCTTAAA+GGG | 0.391511 | 1:-19520814 | MsG0180001328.01.T01:CDS |
| TATTTCTCCACAAATTTCTT+GGG | 0.405795 | 1:+19521663 | None:intergenic |
| TCATCTGCAAGCATTAGATT+TGG | 0.416468 | 1:-19520791 | MsG0180001328.01.T01:CDS |
| AAATTCGTGCAGTTCACAAA+TGG | 0.417597 | 1:-19519825 | MsG0180001328.01.T01:CDS |
| GAAGATTGCGGATTGAAGAT+TGG | 0.417689 | 1:-19519720 | MsG0180001328.01.T01:CDS |
| TTTGCAAAGTCTCTAAAAGA+TGG | 0.419454 | 1:-19521528 | MsG0180001328.01.T01:CDS |
| GACAATTCAAGTTCAAAACT+TGG | 0.430631 | 1:+19521088 | None:intergenic |
| AATTCGTGCAGTTCACAAAT+GGG | 0.433283 | 1:-19519824 | MsG0180001328.01.T01:CDS |
| ATATCTTAACCTTAAAATAT+GGG | 0.446492 | 1:+19521475 | None:intergenic |
| GATTGGAGATACTTGCAAAC+TGG | 0.449776 | 1:-19519703 | MsG0180001328.01.T01:CDS |
| AGGAGCGTGAAGGTGATGTT+TGG | 0.450557 | 1:-19521572 | MsG0180001328.01.T01:CDS |
| GAACAATGACAAGGTTATGA+AGG | 0.451012 | 1:-19520486 | MsG0180001328.01.T01:intron |
| ACTCCCAAATGGTGCTCAAA+AGG | 0.455326 | 1:-19521607 | MsG0180001328.01.T01:CDS |
| GAGGGTTCCCAAGAAATTTG+TGG | 0.458170 | 1:-19521670 | MsG0180001328.01.T01:CDS |
| ACACGAATCTCGATTGTGTT+CGG | 0.462954 | 1:+19519993 | None:intergenic |
| TTTGGCTTGGGTGATAGTTA+TGG | 0.473644 | 1:+19520607 | None:intergenic |
| ATGAGAATGAGAGAACTTGT+AGG | 0.473892 | 1:-19519770 | MsG0180001328.01.T01:CDS |
| TGTGTTTCAGCAGACTTAGA+AGG | 0.481816 | 1:-19520032 | MsG0180001328.01.T01:intron |
| TGTTTGGTTTAAGAGAAATT+GGG | 0.491470 | 1:-19521556 | MsG0180001328.01.T01:CDS |
| AGTACATACTCGAGAGATCA+TGG | 0.493016 | 1:+19520400 | None:intergenic |
| GATATTTGGTCACAATACAT+TGG | 0.502848 | 1:-19521457 | MsG0180001328.01.T01:CDS |
| AGAACTTGTAGGTTCTATGC+AGG | 0.508431 | 1:-19519759 | MsG0180001328.01.T01:CDS |
| CATAAATTTAAGGAAGATTG+CGG | 0.529511 | 1:-19519732 | MsG0180001328.01.T01:CDS |
| GAGGCATTGAAGGAAGTTCA+AGG | 0.529967 | 1:-19520428 | MsG0180001328.01.T01:CDS |
| CTTGTAGGTTCTATGCAGGT+TGG | 0.536785 | 1:-19519755 | MsG0180001328.01.T01:CDS |
| TTCATAGATGAAAGTTGTGA+AGG | 0.538273 | 1:-19521411 | MsG0180001328.01.T01:CDS |
| CAAAGGAGGCATAATTAAGA+GGG | 0.540734 | 1:-19521155 | MsG0180001328.01.T01:CDS |
| ATAGTTATGGTGAATGAAAG+TGG | 0.542900 | 1:+19520620 | None:intergenic |
| GTAATTCTTAGACTCCCAAA+TGG | 0.561023 | 1:-19521618 | MsG0180001328.01.T01:CDS |
| AGAACATGCATTGTGACCTC+TGG | 0.567004 | 1:-19520716 | MsG0180001328.01.T01:CDS |
| GATGGCAATGTTAATAGTGC+TGG | 0.575875 | 1:-19521354 | MsG0180001328.01.T01:CDS |
| CTTAGAAGGTGGTAATGTGA+TGG | 0.576917 | 1:-19520018 | MsG0180001328.01.T01:CDS |
| TTGTCACAATCTTACGCTCA+TGG | 0.577647 | 1:-19521070 | MsG0180001328.01.T01:CDS |
| AACTTTGCAGGTAAGAACAA+AGG | 0.579693 | 1:-19521172 | MsG0180001328.01.T01:intron |
| GGCAAATGGCTTCCAACCAG+AGG | 0.580163 | 1:+19520700 | None:intergenic |
| TATGCTCTTGAAAAGTCACT+TGG | 0.596669 | 1:+19520836 | None:intergenic |
| AAGAGACATAAAGAGTGTCA+TGG | 0.604494 | 1:-19519849 | MsG0180001328.01.T01:CDS |
| TGAGAACATGCCTATGAAAG+TGG | 0.608998 | 1:-19520768 | MsG0180001328.01.T01:CDS |
| TTCGTGCAGTTCACAAATGG+GGG | 0.622353 | 1:-19519822 | MsG0180001328.01.T01:CDS |
| ATTCGTGCAGTTCACAAATG+GGG | 0.622898 | 1:-19519823 | MsG0180001328.01.T01:CDS |
| GTTTCAGCAGACTTAGAAGG+TGG | 0.625758 | 1:-19520029 | MsG0180001328.01.T01:intron |
| ATAGTGCTGGCACATCTCAA+AGG | 0.625943 | 1:-19521341 | MsG0180001328.01.T01:CDS |
| CATGCATTGTGACCTCTGGT+TGG | 0.634224 | 1:-19520712 | MsG0180001328.01.T01:CDS |
| CATAAGTAATCCTACCGGGT+AGG | 0.638502 | 1:+19519962 | None:intergenic |
| ATAACTATCACCCAAGCCAA+AGG | 0.651162 | 1:-19520605 | MsG0180001328.01.T01:CDS |
| GCAGAACAAACAACTAGTGG+TGG | 0.662011 | 1:+19519628 | None:intergenic |
| TCGTGTGAACTCTACCTACC+CGG | 0.663506 | 1:-19519976 | MsG0180001328.01.T01:intron |
| CAAAATCATGAACTACACAA+TGG | 0.670560 | 1:-19521925 | MsG0180001328.01.T01:CDS |
| GAAGTTGTTGAACTGAGTGA+TGG | 0.670925 | 1:-19521372 | MsG0180001328.01.T01:CDS |
| TTTGCAGGTAAGAACAAAGG+AGG | 0.676867 | 1:-19521169 | MsG0180001328.01.T01:intron |
| GAACATGCCTATGAAAGTGG+AGG | 0.736568 | 1:-19520765 | MsG0180001328.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATTATTTAATATTTCA+AGG | - | Chr1:19521422-19521441 | MsG0180001328.01.T01:CDS | 10.0% |
| !! | CAAAATAAAATAAAATTACA+AGG | + | Chr1:19520369-19520388 | None:intergenic | 10.0% |
| !!! | AAATAATTTGTAATATATGA+GGG | + | Chr1:19521413-19521432 | None:intergenic | 10.0% |
| !!! | TAAATAATTTGTAATATATG+AGG | + | Chr1:19521414-19521433 | None:intergenic | 10.0% |
| !!! | TGTAATTTTATTTTATTTTG+AGG | - | Chr1:19520369-19520388 | MsG0180001328.01.T01:intron | 10.0% |
| !!! | TGTTCTAAATTATTATTTAT+TGG | - | Chr1:19520627-19520646 | MsG0180001328.01.T01:CDS | 10.0% |
| !! | AAAAAATATAACTTACAAGT+TGG | - | Chr1:19520928-19520947 | MsG0180001328.01.T01:intron | 15.0% |
| !! | AATATCTTAACCTTAAAATA+TGG | + | Chr1:19520134-19520153 | None:intergenic | 15.0% |
| !! | ATAAGTATAATTAATGCAAA+GGG | + | Chr1:19519893-19519912 | None:intergenic | 15.0% |
| !! | ATATCTTAACCTTAAAATAT+GGG | + | Chr1:19520133-19520152 | None:intergenic | 15.0% |
| !! | GTTATTTAATTATAGTTGAA+AGG | + | Chr1:19519814-19519833 | None:intergenic | 15.0% |
| !!! | AACTTGTAAGTTATATTTTT+TGG | + | Chr1:19520929-19520948 | None:intergenic | 15.0% |
| !!! | ATAAAATTTAAAACAGAACT+TGG | + | Chr1:19521353-19521372 | None:intergenic | 15.0% |
| !!! | ATTAATAACAAAAGTATAGT+TGG | + | Chr1:19519840-19519859 | None:intergenic | 15.0% |
| !!! | CTTGAACTAATATTTTTAAT+TGG | + | Chr1:19521450-19521469 | None:intergenic | 15.0% |
| !!! | CTTTTCAAAAAATTATAACT+AGG | - | Chr1:19521285-19521304 | MsG0180001328.01.T01:intron | 15.0% |
| !!! | CTTTTTTAAATAAAGTATGA+AGG | + | Chr1:19521031-19521050 | None:intergenic | 15.0% |
| !!! | GTTTAAATTTTTTAGAGAAT+AGG | - | Chr1:19521229-19521248 | MsG0180001328.01.T01:intron | 15.0% |
| !!! | TAAGTATAATGTTTTATAGT+AGG | + | Chr1:19520576-19520595 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | Chr1:19520134-19520153 | MsG0180001328.01.T01:intron | 15.0% |
| !!! | TTCATCTATGAATTTTATAT+TGG | + | Chr1:19520186-19520205 | None:intergenic | 15.0% |
| !! | CAATTGATATTAAGCAAATT+TGG | + | Chr1:19521081-19521100 | None:intergenic | 20.0% |
| !! | GATAAGTATAATTAATGCAA+AGG | + | Chr1:19519894-19519913 | None:intergenic | 20.0% |
| !! | GATAATATTTGGAAAAAAAG+AGG | - | Chr1:19521158-19521177 | MsG0180001328.01.T01:CDS | 20.0% |
| !! | TCTATTGTGATGATAATATT+TGG | - | Chr1:19521147-19521166 | MsG0180001328.01.T01:CDS | 20.0% |
| !!! | AACAAAGTTACTAGTAATTT+TGG | - | Chr1:19520701-19520720 | MsG0180001328.01.T01:CDS | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | + | Chr1:19520922-19520941 | None:intergenic | 20.0% |
| !!! | ATCTATTTTAGCCATTTATA+AGG | + | Chr1:19520402-19520421 | None:intergenic | 20.0% |
| !!! | GCTTTAGTTTTCAAATATTT+AGG | - | Chr1:19520104-19520123 | MsG0180001328.01.T01:intron | 20.0% |
| !!! | TTAGTTTTCAAATATTTAGG+TGG | - | Chr1:19520107-19520126 | MsG0180001328.01.T01:intron | 20.0% |
| !!! | TTTTTGTTTTTTAACTTTGC+AGG | - | Chr1:19520421-19520440 | MsG0180001328.01.T01:CDS | 20.0% |
| ! | AAATGATTATCTGTTTCAGA+GGG | - | Chr1:19519917-19519936 | MsG0180001328.01.T01:intron | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | - | Chr1:19519946-19519965 | MsG0180001328.01.T01:intron | 25.0% |
| ! | AGGATTACTTATGTTAAATG+TGG | - | Chr1:19521653-19521672 | MsG0180001328.01.T01:CDS | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | + | Chr1:19519946-19519965 | None:intergenic | 25.0% |
| ! | ATTAATCAGCAAAAAATCTC+TGG | - | Chr1:19520308-19520327 | MsG0180001328.01.T01:intron | 25.0% |
| ! | ATTTGAATGACAACCTTAAA+GGG | - | Chr1:19520791-19520810 | MsG0180001328.01.T01:CDS | 25.0% |
| ! | CATAAATTTAAGGAAGATTG+CGG | - | Chr1:19521873-19521892 | MsG0180001328.01.T01:intron | 25.0% |
| ! | CTGAAACAGATAATCATTTA+TGG | + | Chr1:19519916-19519935 | None:intergenic | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | - | Chr1:19520743-19520762 | MsG0180001328.01.T01:CDS | 25.0% |
| ! | TAAATGATTATCTGTTTCAG+AGG | - | Chr1:19519916-19519935 | MsG0180001328.01.T01:intron | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | + | Chr1:19519945-19519964 | None:intergenic | 25.0% |
| ! | TATTTGAATGACAACCTTAA+AGG | - | Chr1:19520790-19520809 | MsG0180001328.01.T01:CDS | 25.0% |
| ! | TTTAACATAAGTAATCCTAC+CGG | + | Chr1:19521651-19521670 | None:intergenic | 25.0% |
| !! | ATGTTTGGTTTAAGAGAAAT+TGG | - | Chr1:19520048-19520067 | MsG0180001328.01.T01:intron | 25.0% |
| !! | TAACTAGGTTTTCTTACTTT+AGG | - | Chr1:19521300-19521319 | MsG0180001328.01.T01:CDS | 25.0% |
| !! | TCATAATATTGCACTTTTAC+AGG | + | Chr1:19521819-19521838 | None:intergenic | 25.0% |
| !! | TGCTCAAAAGGAAATATTTT+GGG | - | Chr1:19520010-19520029 | MsG0180001328.01.T01:CDS | 25.0% |
| !! | TGTTTGGTTTAAGAGAAATT+GGG | - | Chr1:19520049-19520068 | MsG0180001328.01.T01:intron | 25.0% |
| AAGTATGAAGGAAAAACCTT+TGG | + | Chr1:19521019-19521038 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | - | Chr1:19521110-19521129 | MsG0180001328.01.T01:CDS | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | + | Chr1:19519981-19520000 | None:intergenic | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | + | Chr1:19521117-19521136 | None:intergenic | 30.0% | |
| ATAGTTATGGTGAATGAAAG+TGG | + | Chr1:19520988-19521007 | None:intergenic | 30.0% | |
| ATTTGTAATATATGAGGGAG+AGG | + | Chr1:19521408-19521427 | None:intergenic | 30.0% | |
| CAAAATCATGAACTACACAA+TGG | - | Chr1:19519680-19519699 | MsG0180001328.01.T01:CDS | 30.0% | |
| GATATTTGGTCACAATACAT+TGG | - | Chr1:19520148-19520167 | MsG0180001328.01.T01:intron | 30.0% | |
| GTATCCTCTATTTCAATTCA+AGG | + | Chr1:19520750-19520769 | None:intergenic | 30.0% | |
| TTAACATAAGTAATCCTACC+GGG | + | Chr1:19521650-19521669 | None:intergenic | 30.0% | |
| TTCATAGATGAAAGTTGTGA+AGG | - | Chr1:19520194-19520213 | MsG0180001328.01.T01:intron | 30.0% | |
| TTGTCATTGTTCAAAGGAAT+TGG | + | Chr1:19521111-19521130 | None:intergenic | 30.0% | |
| ! | GACAATTCAAGTTCAAAACT+TGG | + | Chr1:19520520-19520539 | None:intergenic | 30.0% |
| ! | GAGGTATTCTACCTTATAAA+TGG | - | Chr1:19520388-19520407 | MsG0180001328.01.T01:intron | 30.0% |
| ! | GTGCTCAAAAGGAAATATTT+TGG | - | Chr1:19520009-19520028 | MsG0180001328.01.T01:CDS | 30.0% |
| ! | TTTGCAAAGTCTCTAAAAGA+TGG | - | Chr1:19520077-19520096 | MsG0180001328.01.T01:intron | 30.0% |
| !! | TCAAAAGGAAATATTTTGGG+AGG | - | Chr1:19520013-19520032 | MsG0180001328.01.T01:CDS | 30.0% |
| AAATTCGTGCAGTTCACAAA+TGG | - | Chr1:19521780-19521799 | MsG0180001328.01.T01:intron | 35.0% | |
| AACTTTGCAGGTAAGAACAA+AGG | - | Chr1:19520433-19520452 | MsG0180001328.01.T01:CDS | 35.0% | |
| AATTCGTGCAGTTCACAAAT+GGG | - | Chr1:19521781-19521800 | MsG0180001328.01.T01:intron | 35.0% | |
| ACATCTCAAAGGAGAAAAAG+TGG | - | Chr1:19520275-19520294 | MsG0180001328.01.T01:intron | 35.0% | |
| ACTATCTTCAAGAACTCTTC+TGG | + | Chr1:19519659-19519678 | None:intergenic | 35.0% | |
| ATGAGAATGAGAGAACTTGT+AGG | - | Chr1:19521835-19521854 | MsG0180001328.01.T01:intron | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | - | Chr1:19521119-19521138 | MsG0180001328.01.T01:CDS | 35.0% | |
| GTAATTCTTAGACTCCCAAA+TGG | - | Chr1:19519987-19520006 | MsG0180001328.01.T01:CDS | 35.0% | |
| TATGCTCTTGAAAAGTCACT+TGG | + | Chr1:19520772-19520791 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | - | Chr1:19520814-19520833 | MsG0180001328.01.T01:CDS | 35.0% | |
| TTTGGGAGTCTAAGAATTAC+TGG | + | Chr1:19519987-19520006 | None:intergenic | 35.0% | |
| ! | ACAAAGGAGGCATAATTAAG+AGG | - | Chr1:19520449-19520468 | MsG0180001328.01.T01:CDS | 35.0% |
| ! | ATTTCCTTTTGAGCACCATT+TGG | + | Chr1:19520005-19520024 | None:intergenic | 35.0% |
| ! | CAAAGGAGGCATAATTAAGA+GGG | - | Chr1:19520450-19520469 | MsG0180001328.01.T01:CDS | 35.0% |
| ! | TGCAGGTTGGCATAAATTTA+AGG | - | Chr1:19521863-19521882 | MsG0180001328.01.T01:intron | 35.0% |
| ! | TTACGCTCATGGCTATATTT+TGG | - | Chr1:19520546-19520565 | MsG0180001328.01.T01:intron | 35.0% |
| ! | TTTAGGTGGCCCATATTTTA+AGG | - | Chr1:19520121-19520140 | MsG0180001328.01.T01:intron | 35.0% |
| ! | TTTCCTTTTGAGCACCATTT+GGG | + | Chr1:19520004-19520023 | None:intergenic | 35.0% |
| !! | AAGAGACATAAAGAGTGTCA+TGG | - | Chr1:19521756-19521775 | MsG0180001328.01.T01:intron | 35.0% |
| !! | TGGAAAAAAAGAGGCATTGA+AGG | - | Chr1:19521167-19521186 | MsG0180001328.01.T01:intron | 35.0% |
| AACTTCACCTCCACTTTCAT+AGG | + | Chr1:19520850-19520869 | None:intergenic | 40.0% | |
| ACACGAATCTCGATTGTGTT+CGG | + | Chr1:19521615-19521634 | None:intergenic | 40.0% | |
| AGAACTTGTAGGTTCTATGC+AGG | - | Chr1:19521846-19521865 | MsG0180001328.01.T01:intron | 40.0% | |
| AGTACATACTCGAGAGATCA+TGG | + | Chr1:19521208-19521227 | None:intergenic | 40.0% | |
| ATAACTATCACCCAAGCCAA+AGG | - | Chr1:19521000-19521019 | MsG0180001328.01.T01:intron | 40.0% | |
| ATTCGTGCAGTTCACAAATG+GGG | - | Chr1:19521782-19521801 | MsG0180001328.01.T01:intron | 40.0% | |
| GAAGTTGTTGAACTGAGTGA+TGG | - | Chr1:19520233-19520252 | MsG0180001328.01.T01:intron | 40.0% | |
| GATGGCAATGTTAATAGTGC+TGG | - | Chr1:19520251-19520270 | MsG0180001328.01.T01:intron | 40.0% | |
| GATTGGAGATACTTGCAAAC+TGG | - | Chr1:19521902-19521921 | MsG0180001328.01.T01:intron | 40.0% | |
| TCACAAATGGGGGAAAATCA+TGG | - | Chr1:19521793-19521812 | MsG0180001328.01.T01:intron | 40.0% | |
| TGAAGGAAAAACCTTTGGCT+TGG | + | Chr1:19521014-19521033 | None:intergenic | 40.0% | |
| TGAGAACATGCCTATGAAAG+TGG | - | Chr1:19520837-19520856 | MsG0180001328.01.T01:CDS | 40.0% | |
| TGTGTTTCAGCAGACTTAGA+AGG | - | Chr1:19521573-19521592 | MsG0180001328.01.T01:CDS | 40.0% | |
| TTGTCACAATCTTACGCTCA+TGG | - | Chr1:19520535-19520554 | MsG0180001328.01.T01:intron | 40.0% | |
| TTTGCAGGTAAGAACAAAGG+AGG | - | Chr1:19520436-19520455 | MsG0180001328.01.T01:CDS | 40.0% | |
| ! | CTTAGAAGGTGGTAATGTGA+TGG | - | Chr1:19521587-19521606 | MsG0180001328.01.T01:CDS | 40.0% |
| ! | GAAGATTGCGGATTGAAGAT+TGG | - | Chr1:19521885-19521904 | MsG0180001328.01.T01:intron | 40.0% |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | + | Chr1:19521013-19521032 | None:intergenic | 40.0% |
| !! | TTTGGCTTGGGTGATAGTTA+TGG | + | Chr1:19521001-19521020 | None:intergenic | 40.0% |
| ACTCCCAAATGGTGCTCAAA+AGG | - | Chr1:19519998-19520017 | MsG0180001328.01.T01:CDS | 45.0% | |
| AGAACATGCATTGTGACCTC+TGG | - | Chr1:19520889-19520908 | MsG0180001328.01.T01:intron | 45.0% | |
| CATAAGTAATCCTACCGGGT+AGG | + | Chr1:19521646-19521665 | None:intergenic | 45.0% | |
| CTTGTAGGTTCTATGCAGGT+TGG | - | Chr1:19521850-19521869 | MsG0180001328.01.T01:intron | 45.0% | |
| GAACATGCCTATGAAAGTGG+AGG | - | Chr1:19520840-19520859 | MsG0180001328.01.T01:CDS | 45.0% | |
| GAGGGTTCCCAAGAAATTTG+TGG | - | Chr1:19519935-19519954 | MsG0180001328.01.T01:intron | 45.0% | |
| GTTTCAGCAGACTTAGAAGG+TGG | - | Chr1:19521576-19521595 | MsG0180001328.01.T01:CDS | 45.0% | |
| TGCTTGCAGATGACCCTTTA+AGG | + | Chr1:19520807-19520826 | None:intergenic | 45.0% | |
| TTCGTGCAGTTCACAAATGG+GGG | - | Chr1:19521783-19521802 | MsG0180001328.01.T01:intron | 45.0% | |
| !! | ATAGTGCTGGCACATCTCAA+AGG | - | Chr1:19520264-19520283 | MsG0180001328.01.T01:intron | 45.0% |
| !! | ATATTTTGGGAGGAGCGTGA+AGG | - | Chr1:19520023-19520042 | MsG0180001328.01.T01:CDS | 45.0% |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | - | Chr1:19521177-19521196 | MsG0180001328.01.T01:intron | 45.0% |
| CATGCATTGTGACCTCTGGT+TGG | - | Chr1:19520893-19520912 | MsG0180001328.01.T01:intron | 50.0% | |
| TCGTGTGAACTCTACCTACC+CGG | - | Chr1:19521629-19521648 | MsG0180001328.01.T01:CDS | 50.0% | |
| ! | AGGAGCGTGAAGGTGATGTT+TGG | - | Chr1:19520033-19520052 | MsG0180001328.01.T01:intron | 50.0% |
| GGCAAATGGCTTCCAACCAG+AGG | + | Chr1:19520908-19520927 | None:intergenic | 55.0% | |
| GTGAACTCTACCTACCCGGT+AGG | - | Chr1:19521633-19521652 | MsG0180001328.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 19519641 | 19521986 | 19519641 | ID=MsG0180001328.01;Name=MsG0180001328.01 |
| Chr1 | mRNA | 19519641 | 19521986 | 19519641 | ID=MsG0180001328.01.T01;Parent=MsG0180001328.01;Name=MsG0180001328.01.T01;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0.5|0.42|7|0|433 |
| Chr1 | exon | 19521918 | 19521986 | 19521918 | ID=MsG0180001328.01.T01:exon:25929;Parent=MsG0180001328.01.T01 |
| Chr1 | exon | 19521298 | 19521691 | 19521298 | ID=MsG0180001328.01.T01:exon:25928;Parent=MsG0180001328.01.T01 |
| Chr1 | exon | 19521060 | 19521184 | 19521060 | ID=MsG0180001328.01.T01:exon:25927;Parent=MsG0180001328.01.T01 |
| Chr1 | exon | 19520558 | 19520864 | 19520558 | ID=MsG0180001328.01.T01:exon:25926;Parent=MsG0180001328.01.T01 |
| Chr1 | exon | 19520409 | 19520495 | 19520409 | ID=MsG0180001328.01.T01:exon:25925;Parent=MsG0180001328.01.T01 |
| Chr1 | exon | 19519977 | 19520044 | 19519977 | ID=MsG0180001328.01.T01:exon:25924;Parent=MsG0180001328.01.T01 |
| Chr1 | exon | 19519641 | 19519892 | 19519641 | ID=MsG0180001328.01.T01:exon:25923;Parent=MsG0180001328.01.T01 |
| Chr1 | CDS | 19521918 | 19521986 | 19521918 | ID=MsG0180001328.01.T01:cds;Parent=MsG0180001328.01.T01 |
| Chr1 | CDS | 19521298 | 19521691 | 19521298 | ID=MsG0180001328.01.T01:cds;Parent=MsG0180001328.01.T01 |
| Chr1 | CDS | 19521060 | 19521184 | 19521060 | ID=MsG0180001328.01.T01:cds;Parent=MsG0180001328.01.T01 |
| Chr1 | CDS | 19520558 | 19520864 | 19520558 | ID=MsG0180001328.01.T01:cds;Parent=MsG0180001328.01.T01 |
| Chr1 | CDS | 19520409 | 19520495 | 19520409 | ID=MsG0180001328.01.T01:cds;Parent=MsG0180001328.01.T01 |
| Chr1 | CDS | 19519977 | 19520044 | 19519977 | ID=MsG0180001328.01.T01:cds;Parent=MsG0180001328.01.T01 |
| Chr1 | CDS | 19519641 | 19519892 | 19519641 | ID=MsG0180001328.01.T01:cds;Parent=MsG0180001328.01.T01 |
| Gene Sequence |
| Protein sequence |
