Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001330.01.T01 | RHN78231.1 | 85.809 | 303 | 43 | 0 | 1 | 303 | 1 | 303 | 0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001330.01.T01 | Q9ZSH7 | 29.371 | 143 | 95 | 3 | 7 | 147 | 28 | 166 | 1.27E-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001330.01.T01 | A0A396JNG9 | 85.809 | 303 | 43 | 0 | 1 | 303 | 1 | 303 | 0.0 | 519 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180001330.01.T01 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001330.01.T01 | MTR_1g035650 | 88.670 | 203 | 23 | 0 | 1 | 203 | 1 | 203 | 3.85e-126 | 359 |
| MsG0180001330.01.T01 | MTR_1g035620 | 55.369 | 298 | 103 | 9 | 1 | 285 | 1 | 281 | 1.18e-97 | 294 |
| MsG0180001330.01.T01 | MTR_1g050845 | 53.979 | 289 | 109 | 8 | 1 | 285 | 1 | 269 | 5.31e-84 | 270 |
| MsG0180001330.01.T01 | MTR_1g035640 | 48.684 | 304 | 139 | 6 | 1 | 298 | 1 | 293 | 9.20e-84 | 260 |
| MsG0180001330.01.T01 | MTR_1g035570 | 44.062 | 320 | 136 | 7 | 1 | 297 | 1 | 300 | 3.43e-76 | 239 |
| MsG0180001330.01.T01 | MTR_6g061070 | 39.748 | 317 | 159 | 8 | 9 | 294 | 18 | 333 | 1.15e-62 | 206 |
| MsG0180001330.01.T01 | MTR_5g044670 | 29.126 | 309 | 188 | 8 | 3 | 289 | 10 | 309 | 2.70e-37 | 135 |
| MsG0180001330.01.T01 | MTR_7g050580 | 33.677 | 291 | 170 | 10 | 6 | 283 | 10 | 290 | 1.74e-33 | 125 |
| MsG0180001330.01.T01 | MTR_7g050560 | 33.117 | 308 | 149 | 11 | 6 | 283 | 10 | 290 | 2.58e-33 | 125 |
| MsG0180001330.01.T01 | MTR_3g098790 | 29.831 | 295 | 193 | 7 | 6 | 287 | 10 | 303 | 2.56e-32 | 122 |
| MsG0180001330.01.T01 | MTR_7g050710 | 29.766 | 299 | 188 | 8 | 6 | 283 | 10 | 307 | 5.65e-32 | 121 |
| MsG0180001330.01.T01 | MTR_1g035490 | 42.138 | 159 | 76 | 2 | 133 | 289 | 58 | 202 | 4.23e-31 | 119 |
| MsG0180001330.01.T01 | MTR_1g033740 | 37.500 | 176 | 82 | 5 | 2 | 155 | 8 | 177 | 3.73e-28 | 108 |
| MsG0180001330.01.T01 | MTR_4g119990 | 28.814 | 295 | 172 | 10 | 9 | 273 | 15 | 301 | 8.84e-28 | 111 |
| MsG0180001330.01.T01 | MTR_7g050720 | 29.904 | 311 | 183 | 10 | 6 | 283 | 7 | 315 | 9.10e-28 | 110 |
| MsG0180001330.01.T01 | MTR_7g050590 | 31.429 | 280 | 170 | 8 | 25 | 283 | 2 | 280 | 1.25e-27 | 109 |
| MsG0180001330.01.T01 | MTR_8g103940 | 30.000 | 310 | 181 | 11 | 8 | 290 | 38 | 338 | 1.00e-26 | 110 |
| MsG0180001330.01.T01 | MTR_6g043890 | 28.966 | 290 | 172 | 9 | 9 | 273 | 15 | 295 | 6.35e-26 | 105 |
| MsG0180001330.01.T01 | MTR_1g035500 | 35.185 | 162 | 93 | 3 | 5 | 155 | 21 | 181 | 4.16e-25 | 100 |
| MsG0180001330.01.T01 | MTR_1g035480 | 36.842 | 171 | 88 | 5 | 2 | 155 | 3 | 170 | 7.01e-24 | 96.7 |
| MsG0180001330.01.T01 | MTR_3g061340 | 28.671 | 286 | 173 | 10 | 6 | 281 | 9 | 273 | 3.09e-22 | 94.4 |
| MsG0180001330.01.T01 | MTR_1g035520 | 26.230 | 305 | 167 | 10 | 25 | 281 | 88 | 382 | 3.98e-22 | 95.9 |
| MsG0180001330.01.T01 | MTR_1g108780 | 26.712 | 292 | 177 | 9 | 24 | 287 | 12 | 294 | 7.29e-21 | 92.8 |
| MsG0180001330.01.T01 | MTR_3g061320 | 24.820 | 278 | 199 | 5 | 6 | 281 | 9 | 278 | 1.61e-20 | 89.7 |
| MsG0180001330.01.T01 | MTR_3g061310 | 24.731 | 279 | 204 | 4 | 6 | 281 | 9 | 284 | 1.68e-20 | 89.7 |
| MsG0180001330.01.T01 | MTR_3g061350 | 26.027 | 292 | 183 | 8 | 6 | 281 | 9 | 283 | 7.85e-20 | 87.8 |
| MsG0180001330.01.T01 | MTR_1g035470 | 36.691 | 139 | 76 | 3 | 25 | 155 | 2 | 136 | 7.29e-19 | 82.0 |
| MsG0180001330.01.T01 | MTR_3g061290 | 38.583 | 127 | 69 | 3 | 6 | 130 | 9 | 128 | 1.86e-18 | 82.4 |
| MsG0180001330.01.T01 | MTR_3g061330 | 39.167 | 120 | 68 | 3 | 6 | 122 | 9 | 126 | 2.42e-18 | 83.2 |
| MsG0180001330.01.T01 | MTR_3g061370 | 26.578 | 301 | 166 | 9 | 8 | 281 | 8 | 280 | 2.65e-18 | 83.6 |
| MsG0180001330.01.T01 | MTR_1g035510 | 32.143 | 140 | 85 | 3 | 25 | 155 | 2 | 140 | 3.18e-17 | 79.3 |
| MsG0180001330.01.T01 | MTR_3g005420 | 28.214 | 280 | 170 | 7 | 7 | 284 | 287 | 537 | 6.19e-15 | 75.5 |
| MsG0180001330.01.T01 | MTR_5g070440 | 24.911 | 281 | 178 | 7 | 7 | 284 | 19 | 269 | 5.12e-14 | 71.2 |
| MsG0180001330.01.T01 | MTR_3g005490 | 25.000 | 284 | 169 | 9 | 7 | 286 | 19 | 262 | 7.27e-14 | 70.9 |
| MsG0180001330.01.T01 | MTR_7g050640 | 39.362 | 94 | 55 | 1 | 9 | 100 | 13 | 106 | 2.98e-13 | 65.9 |
| MsG0180001330.01.T01 | MTR_3g005480 | 24.468 | 282 | 168 | 9 | 7 | 283 | 19 | 260 | 4.03e-13 | 68.6 |
| MsG0180001330.01.T01 | MTR_1g035460 | 40.244 | 82 | 47 | 1 | 25 | 104 | 2 | 83 | 5.14e-13 | 69.3 |
| MsG0180001330.01.T01 | MTR_1g035440 | 38.776 | 98 | 57 | 2 | 9 | 103 | 15 | 112 | 1.22e-12 | 67.0 |
| MsG0180001330.01.T01 | MTR_3g005460 | 23.776 | 286 | 173 | 10 | 9 | 281 | 262 | 515 | 1.40e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001330.01.T01 | AT4G01580 | 29.371 | 143 | 95 | 3 | 7 | 147 | 28 | 166 | 1.30e-14 | 71.6 |
Find 43 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTAGCTTCACAAAATATT+TGG | 0.130474 | 1:+19555639 | None:intergenic |
| GTGCTAAACAAGATGTATTT+TGG | 0.183994 | 1:-19555573 | MsG0180001330.01.T01:CDS |
| TTATGCCAAAGGATGTTATT+TGG | 0.223238 | 1:-19555035 | MsG0180001330.01.T01:intron |
| TGTTTCAAAGTTGAAATATT+TGG | 0.227189 | 1:-19555448 | MsG0180001330.01.T01:CDS |
| ATTATCTTGAAGAACTTTCT+AGG | 0.251633 | 1:+19555805 | None:intergenic |
| TGACATTTCAACTTCAAAAC+TGG | 0.265312 | 1:+19555063 | None:intergenic |
| GAAAAGGTGGCAAGAGAAAA+AGG | 0.281037 | 1:-19555312 | MsG0180001330.01.T01:CDS |
| ACATCTTGTTTAGCACCATT+TGG | 0.328942 | 1:+19555580 | None:intergenic |
| CAAAATCAAGAACTGCAAAA+TGG | 0.354682 | 1:-19555781 | MsG0180001330.01.T01:CDS |
| AGCAAGAAATTATCATCCTT+TGG | 0.369605 | 1:-19555092 | MsG0180001330.01.T01:CDS |
| TGTAGCTTCACAAAATATTT+GGG | 0.369839 | 1:+19555640 | None:intergenic |
| ATTGCAAAATCTTTGATACT+TGG | 0.372938 | 1:-19555505 | MsG0180001330.01.T01:CDS |
| TGGAGCGTAATGGTGATATT+TGG | 0.378752 | 1:-19555549 | MsG0180001330.01.T01:CDS |
| AGAATAAAGACTACTGGATT+TGG | 0.390473 | 1:+19555604 | None:intergenic |
| CATCTTGTTTAGCACCATTT+GGG | 0.395094 | 1:+19555581 | None:intergenic |
| ACATACCAAATAACATCCTT+TGG | 0.421503 | 1:+19555030 | None:intergenic |
| TTGCAAAATCTTTGATACTT+GGG | 0.433780 | 1:-19555504 | MsG0180001330.01.T01:CDS |
| AAAATATATAATTTGAAACT+TGG | 0.446327 | 1:-19554513 | MsG0180001330.01.T01:CDS |
| GTAGTCTTTATTCTCCCAAA+TGG | 0.456688 | 1:-19555595 | MsG0180001330.01.T01:CDS |
| AACTTTGCAGGTTGTAATAG+AGG | 0.470896 | 1:-19555169 | MsG0180001330.01.T01:intron |
| TTATCTTGAAGAACTTTCTA+GGG | 0.480715 | 1:+19555806 | None:intergenic |
| TTTGGGAGAATAAAGACTAC+TGG | 0.483895 | 1:+19555598 | None:intergenic |
| GACAATGTTACTAATACTAA+TGG | 0.484869 | 1:-19555355 | MsG0180001330.01.T01:CDS |
| AGTACATCTCAAAGGAGAAA+AGG | 0.489671 | 1:-19555328 | MsG0180001330.01.T01:CDS |
| CTCCTCTCTTGCTCGAGTAA+TGG | 0.510615 | 1:+19554437 | None:intergenic |
| TTTAAGAAGTTGAAGTTGCA+AGG | 0.514255 | 1:-19554408 | MsG0180001330.01.T01:CDS |
| GACATTTCAACTTCAAAACT+GGG | 0.526404 | 1:+19555064 | None:intergenic |
| ATGGTAATAGTGAATAAAAG+TGG | 0.534500 | 1:+19554456 | None:intergenic |
| CATCTACTGTGACCACTGGT+TGG | 0.552617 | 1:-19554548 | MsG0180001330.01.T01:CDS |
| TAGAGGAGGCAAGATTAAGA+AGG | 0.558763 | 1:-19555152 | MsG0180001330.01.T01:CDS |
| AAATCATCTACTGTGACCAC+TGG | 0.561649 | 1:-19554552 | MsG0180001330.01.T01:CDS |
| AACTTCAACTTCTTAAAGCT+AGG | 0.570828 | 1:+19554414 | None:intergenic |
| TACCATTACTCGAGCAAGAG+AGG | 0.576066 | 1:-19554439 | MsG0180001330.01.T01:CDS |
| TAATAGTGAATAAAAGTGGT+TGG | 0.584021 | 1:+19554460 | None:intergenic |
| ATGTCACGATCTTATGCCAA+AGG | 0.590157 | 1:-19555046 | MsG0180001330.01.T01:CDS |
| TTCATCAACTCTAAATCTTG+CGG | 0.597151 | 1:+19554617 | None:intergenic |
| AATATTTGGTCGCAATACAG+TGG | 0.606076 | 1:-19555434 | MsG0180001330.01.T01:CDS |
| GCTAAATGACTTCCAACCAG+TGG | 0.615117 | 1:+19554536 | None:intergenic |
| ACATCTCAAAGGAGAAAAGG+TGG | 0.624210 | 1:-19555325 | MsG0180001330.01.T01:CDS |
| ATTTAGAGTTGATGAAGACA+TGG | 0.625733 | 1:-19554610 | MsG0180001330.01.T01:CDS |
| TTTGCAGGTTGTAATAGAGG+AGG | 0.626297 | 1:-19555166 | MsG0180001330.01.T01:intron |
| ATGGTGCTAGTACATCTCAA+AGG | 0.644614 | 1:-19555336 | MsG0180001330.01.T01:CDS |
| TATTGAAACAGAGGATACCA+AGG | 0.667785 | 1:-19554677 | MsG0180001330.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAATCCTTAAAAAAA+AGG | + | Chr1:19555387-19555406 | None:intergenic | 10.0% |
| !!! | AAAATATATAATTTGAAACT+TGG | - | Chr1:19555654-19555673 | MsG0180001330.01.T01:intron | 10.0% |
| !!! | TTTTATAAAAGTGTAAAAAA+TGG | - | Chr1:19555409-19555428 | MsG0180001330.01.T01:CDS | 10.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | - | Chr1:19554633-19554652 | MsG0180001330.01.T01:CDS | 15.0% |
| !!! | GTTCTAGTTTTTAAATATAA+AGG | - | Chr1:19554689-19554708 | MsG0180001330.01.T01:intron | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | - | Chr1:19554634-19554653 | MsG0180001330.01.T01:CDS | 15.0% |
| !!! | TATTTTAAGCCTTTTTTTTA+AGG | - | Chr1:19555375-19555394 | MsG0180001330.01.T01:CDS | 15.0% |
| !!! | TGATTTTTTAACATTGTTAA+AGG | + | Chr1:19554457-19554476 | None:intergenic | 15.0% |
| !! | AAAAATATTTATCTTGCAGA+GGG | - | Chr1:19554502-19554521 | MsG0180001330.01.T01:CDS | 20.0% |
| !! | AAATACTTGAAAAAATTGGA+AGG | - | Chr1:19555525-19555544 | MsG0180001330.01.T01:CDS | 20.0% |
| !! | AATACTTGAAAAAATTGGAA+GGG | - | Chr1:19555526-19555545 | MsG0180001330.01.T01:CDS | 20.0% |
| !! | GAGAAAATACTTGAAAAAAT+TGG | - | Chr1:19555521-19555540 | MsG0180001330.01.T01:CDS | 20.0% |
| !! | TGTTTCAAAGTTGAAATATT+TGG | - | Chr1:19554719-19554738 | MsG0180001330.01.T01:intron | 20.0% |
| !! | TTCTCTTAAATATTGTTGAT+AGG | + | Chr1:19555335-19555354 | None:intergenic | 20.0% |
| !!! | ACTTTCAAAATTTTCAAATC+TGG | - | Chr1:19555162-19555181 | MsG0180001330.01.T01:CDS | 20.0% |
| !!! | CTAGTTTTTAAATATAAAGG+AGG | - | Chr1:19554692-19554711 | MsG0180001330.01.T01:intron | 20.0% |
| ! | ATGGTAATAGTGAATAAAAG+TGG | + | Chr1:19555714-19555733 | None:intergenic | 25.0% |
| ! | ATGTAGCTTCACAAAATATT+TGG | + | Chr1:19554531-19554550 | None:intergenic | 25.0% |
| ! | ATTATCTTGAAGAACTTTCT+AGG | + | Chr1:19554365-19554384 | None:intergenic | 25.0% |
| ! | ATTGCAAAATCTTTGATACT+TGG | - | Chr1:19554662-19554681 | MsG0180001330.01.T01:CDS | 25.0% |
| ! | CAAAAATATTTATCTTGCAG+AGG | - | Chr1:19554501-19554520 | MsG0180001330.01.T01:CDS | 25.0% |
| ! | GACAATGTTACTAATACTAA+TGG | - | Chr1:19554812-19554831 | MsG0180001330.01.T01:intron | 25.0% |
| ! | GCTAATCAGAAAAAAATCAA+AGG | - | Chr1:19554893-19554912 | MsG0180001330.01.T01:intron | 25.0% |
| ! | TAAGAGAAAACTCTCAAAAT+AGG | - | Chr1:19555347-19555366 | MsG0180001330.01.T01:CDS | 25.0% |
| ! | TAATAGTGAATAAAAGTGGT+TGG | + | Chr1:19555710-19555729 | None:intergenic | 25.0% |
| ! | TGTAGCTTCACAAAATATTT+GGG | + | Chr1:19554530-19554549 | None:intergenic | 25.0% |
| ! | TTATCTTGAAGAACTTTCTA+GGG | + | Chr1:19554364-19554383 | None:intergenic | 25.0% |
| ! | TTGCAAAATCTTTGATACTT+GGG | - | Chr1:19554663-19554682 | MsG0180001330.01.T01:CDS | 25.0% |
| !! | AATATTTTGTGAAGCTACAT+TGG | - | Chr1:19554531-19554550 | MsG0180001330.01.T01:CDS | 25.0% |
| !! | TATTTTCTCGAAAAATACCT+TGG | + | Chr1:19555510-19555529 | None:intergenic | 25.0% |
| !! | TGCTAAACAAGATGTATTTT+GGG | - | Chr1:19554595-19554614 | MsG0180001330.01.T01:CDS | 25.0% |
| !!! | TTCAGCTTCAACTTTTATTT+TGG | + | Chr1:19554771-19554790 | None:intergenic | 25.0% |
| !!! | TTTTTTATGTGTAACTTTGC+AGG | - | Chr1:19554986-19555005 | MsG0180001330.01.T01:intron | 25.0% |
| AACTTCAACTTCTTAAAGCT+AGG | + | Chr1:19555756-19555775 | None:intergenic | 30.0% | |
| ACAAACCAATATTGAAACAG+AGG | - | Chr1:19555481-19555500 | MsG0180001330.01.T01:CDS | 30.0% | |
| ACATACCAAATAACATCCTT+TGG | + | Chr1:19555140-19555159 | None:intergenic | 30.0% | |
| AGAATAAAGACTACTGGATT+TGG | + | Chr1:19554566-19554585 | None:intergenic | 30.0% | |
| AGCAAGAAATTATCATCCTT+TGG | - | Chr1:19555075-19555094 | MsG0180001330.01.T01:CDS | 30.0% | |
| CAAAATCAAGAACTGCAAAA+TGG | - | Chr1:19554386-19554405 | MsG0180001330.01.T01:CDS | 30.0% | |
| GACATTTCAACTTCAAAACT+GGG | + | Chr1:19555106-19555125 | None:intergenic | 30.0% | |
| TGACATTTCAACTTCAAAAC+TGG | + | Chr1:19555107-19555126 | None:intergenic | 30.0% | |
| TTATGCCAAAGGATGTTATT+TGG | - | Chr1:19555132-19555151 | MsG0180001330.01.T01:CDS | 30.0% | |
| TTCATCAACTCTAAATCTTG+CGG | + | Chr1:19555553-19555572 | None:intergenic | 30.0% | |
| TTTAAGAAGTTGAAGTTGCA+AGG | - | Chr1:19555759-19555778 | MsG0180001330.01.T01:intron | 30.0% | |
| ! | GTGCTAAACAAGATGTATTT+TGG | - | Chr1:19554594-19554613 | MsG0180001330.01.T01:CDS | 30.0% |
| !! | ATTTAGAGTTGATGAAGACA+TGG | - | Chr1:19555557-19555576 | MsG0180001330.01.T01:CDS | 30.0% |
| !! | TAAACAAGATGTATTTTGGG+TGG | - | Chr1:19554598-19554617 | MsG0180001330.01.T01:CDS | 30.0% |
| AACTTTGCAGGTTGTAATAG+AGG | - | Chr1:19554998-19555017 | MsG0180001330.01.T01:intron | 35.0% | |
| AATATTTGGTCGCAATACAG+TGG | - | Chr1:19554733-19554752 | MsG0180001330.01.T01:intron | 35.0% | |
| AGTACATCTCAAAGGAGAAA+AGG | - | Chr1:19554839-19554858 | MsG0180001330.01.T01:intron | 35.0% | |
| GGTATCCTCTGTTTCAATAT+TGG | + | Chr1:19555489-19555508 | None:intergenic | 35.0% | |
| GTAGTCTTTATTCTCCCAAA+TGG | - | Chr1:19554572-19554591 | MsG0180001330.01.T01:CDS | 35.0% | |
| TATTGAAACAGAGGATACCA+AGG | - | Chr1:19555490-19555509 | MsG0180001330.01.T01:CDS | 35.0% | |
| TGGCAAGAGAAAAAGGAATA+TGG | - | Chr1:19554862-19554881 | MsG0180001330.01.T01:intron | 35.0% | |
| TTTGGGAGAATAAAGACTAC+TGG | + | Chr1:19554572-19554591 | None:intergenic | 35.0% | |
| ! | ACATCTTGTTTAGCACCATT+TGG | + | Chr1:19554590-19554609 | None:intergenic | 35.0% |
| ! | CATCTTGTTTAGCACCATTT+GGG | + | Chr1:19554589-19554608 | None:intergenic | 35.0% |
| ! | TCAAAACTGGGATTTTCCAA+AGG | + | Chr1:19555094-19555113 | None:intergenic | 35.0% |
| AAATCATCTACTGTGACCAC+TGG | - | Chr1:19555615-19555634 | MsG0180001330.01.T01:CDS | 40.0% | |
| ACATCTCAAAGGAGAAAAGG+TGG | - | Chr1:19554842-19554861 | MsG0180001330.01.T01:intron | 40.0% | |
| ATGTCACGATCTTATGCCAA+AGG | - | Chr1:19555121-19555140 | MsG0180001330.01.T01:CDS | 40.0% | |
| GAAAAGGTGGCAAGAGAAAA+AGG | - | Chr1:19554855-19554874 | MsG0180001330.01.T01:intron | 40.0% | |
| TAGAGGAGGCAAGATTAAGA+AGG | - | Chr1:19555015-19555034 | MsG0180001330.01.T01:intron | 40.0% | |
| TGGAGCGTAATGGTGATATT+TGG | - | Chr1:19554618-19554637 | MsG0180001330.01.T01:CDS | 40.0% | |
| TTTGCAGGTTGTAATAGAGG+AGG | - | Chr1:19555001-19555020 | MsG0180001330.01.T01:intron | 40.0% | |
| ! | ATGGTGCTAGTACATCTCAA+AGG | - | Chr1:19554831-19554850 | MsG0180001330.01.T01:intron | 40.0% |
| GCTAAATGACTTCCAACCAG+TGG | + | Chr1:19555634-19555653 | None:intergenic | 45.0% | |
| TACCATTACTCGAGCAAGAG+AGG | - | Chr1:19555728-19555747 | MsG0180001330.01.T01:intron | 45.0% | |
| !! | GTATTTTGGGTGGAGCGTAA+TGG | - | Chr1:19554608-19554627 | MsG0180001330.01.T01:CDS | 45.0% |
| CATCTACTGTGACCACTGGT+TGG | - | Chr1:19555619-19555638 | MsG0180001330.01.T01:CDS | 50.0% | |
| CTCCTCTCTTGCTCGAGTAA+TGG | + | Chr1:19555733-19555752 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 19554347 | 19555842 | 19554347 | ID=MsG0180001330.01;Name=MsG0180001330.01 |
| Chr1 | mRNA | 19554347 | 19555842 | 19554347 | ID=MsG0180001330.01.T01;Parent=MsG0180001330.01;Name=MsG0180001330.01.T01;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|4|0|316 |
| Chr1 | exon | 19555774 | 19555842 | 19555774 | ID=MsG0180001330.01.T01:exon:25933;Parent=MsG0180001330.01.T01 |
| Chr1 | exon | 19555275 | 19555668 | 19555275 | ID=MsG0180001330.01.T01:exon:25932;Parent=MsG0180001330.01.T01 |
| Chr1 | exon | 19555036 | 19555181 | 19555036 | ID=MsG0180001330.01.T01:exon:25931;Parent=MsG0180001330.01.T01 |
| Chr1 | exon | 19554347 | 19554688 | 19554347 | ID=MsG0180001330.01.T01:exon:25930;Parent=MsG0180001330.01.T01 |
| Chr1 | CDS | 19555774 | 19555842 | 19555774 | ID=MsG0180001330.01.T01:cds;Parent=MsG0180001330.01.T01 |
| Chr1 | CDS | 19555275 | 19555668 | 19555275 | ID=MsG0180001330.01.T01:cds;Parent=MsG0180001330.01.T01 |
| Chr1 | CDS | 19555036 | 19555181 | 19555036 | ID=MsG0180001330.01.T01:cds;Parent=MsG0180001330.01.T01 |
| Chr1 | CDS | 19554347 | 19554688 | 19554347 | ID=MsG0180001330.01.T01:cds;Parent=MsG0180001330.01.T01 |
| Gene Sequence |
| Protein sequence |
