AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001340.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001340.01.T01 MTR_6g061070 62.613 444 73 6 1 357 33 470 0.0 527
MsG0180001340.01.T01 MTR_1g035520 48.822 297 100 6 1 245 87 383 3.02e-73 232
MsG0180001340.01.T01 MTR_1g035520 87.255 102 13 0 256 357 282 383 1.18e-57 192
MsG0180001340.01.T01 MTR_1g035480 63.750 160 37 2 1 159 32 171 7.22e-64 201
MsG0180001340.01.T01 MTR_1g033740 63.522 159 41 1 1 159 37 178 9.23e-64 201
MsG0180001340.01.T01 MTR_1g035500 60.000 160 46 2 1 159 40 182 1.09e-61 196
MsG0180001340.01.T01 MTR_1g035570 32.898 383 221 10 2 357 21 394 3.31e-56 189
MsG0180001340.01.T01 MTR_1g035470 63.889 144 31 1 1 144 1 123 4.80e-56 180
MsG0180001340.01.T01 MTR_1g035510 52.514 179 55 3 1 173 1 155 4.98e-55 180
MsG0180001340.01.T01 MTR_1g035620 32.558 430 169 11 2 356 25 408 3.65e-51 176
MsG0180001340.01.T01 MTR_1g035640 34.884 301 121 8 2 257 21 291 8.99e-42 152
MsG0180001340.01.T01 MTR_1g035540 81.250 80 14 1 205 283 24 103 4.99e-39 135
MsG0180001340.01.T01 MTR_1g035650 39.130 207 94 5 2 207 25 200 7.07e-37 132
MsG0180001340.01.T01 MTR_1g050845 29.630 351 205 10 2 322 25 363 2.30e-35 137
MsG0180001340.01.T01 MTR_1g035490 40.116 172 72 7 212 357 162 328 2.91e-29 115
MsG0180001340.01.T01 MTR_5g044670 27.797 295 184 9 1 267 31 324 5.11e-26 106
MsG0180001340.01.T01 MTR_3g098790 28.852 305 129 11 1 248 28 301 7.97e-23 97.8
MsG0180001340.01.T01 MTR_7g050580 29.348 276 156 10 1 248 28 292 1.81e-21 94.0
MsG0180001340.01.T01 MTR_1g035460 25.159 314 168 7 1 260 1 301 2.67e-21 94.4
MsG0180001340.01.T01 MTR_7g050590 27.632 304 142 9 1 248 1 282 5.94e-21 92.0
MsG0180001340.01.T01 MTR_1g108780 25.552 317 157 10 2 265 13 303 2.64e-20 92.0
MsG0180001340.01.T01 MTR_7g050710 27.451 306 138 10 2 248 29 309 8.64e-20 89.4
MsG0180001340.01.T01 MTR_7g050560 27.759 299 131 8 1 248 28 292 1.67e-19 88.2
MsG0180001340.01.T01 MTR_7g050720 28.065 310 134 11 1 245 25 310 4.38e-19 87.0
MsG0180001340.01.T01 MTR_3g061370 28.090 267 159 10 2 244 23 280 1.03e-18 85.5
MsG0180001340.01.T01 MTR_3g061320 25.818 275 152 12 2 245 26 279 7.90e-18 82.8
MsG0180001340.01.T01 MTR_8g103940 21.778 450 246 15 2 356 55 493 2.33e-17 83.6
MsG0180001340.01.T01 MTR_3g061350 24.913 289 140 9 2 244 26 283 3.33e-17 81.3
MsG0180001340.01.T01 MTR_3g061290 34.351 131 74 4 2 127 26 149 1.25e-15 75.1
MsG0180001340.01.T01 MTR_3g061310 26.199 271 162 10 2 245 26 285 4.10e-15 75.1
MsG0180001340.01.T01 MTR_4g119990 36.296 135 73 5 2 127 31 161 4.52e-15 76.3
MsG0180001340.01.T01 MTR_3g061330 35.833 120 69 3 2 118 26 140 1.10e-14 73.6
MsG0180001340.01.T01 MTR_6g043890 27.481 262 154 9 2 230 31 289 1.01e-13 71.6
MsG0180001340.01.T01 MTR_3g061220 38.776 98 49 3 2 98 26 113 2.22e-13 66.6
MsG0180001340.01.T01 MTR_1g035440 42.857 84 44 2 2 81 31 114 4.69e-12 65.9
MsG0180001340.01.T01 MTR_3g005495 25.103 243 135 9 2 235 259 463 1.09e-11 66.2
MsG0180001340.01.T01 MTR_1g021320 23.485 396 247 14 2 345 198 589 4.63e-11 64.7
MsG0180001340.01.T01 MTR_7g050640 40.506 79 44 2 1 76 28 106 7.05e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 64 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGAAGTATAAGGGAAAT+TGG 0.230152 1:+19662625 None:intergenic
GGGCATGGTTCCTTTGTGGC+TGG 0.290615 1:+19661200 None:intergenic
GAGACCCATTTGGAAGTATA+AGG 0.291808 1:+19662617 None:intergenic
TATATTGGATGATAGTAGTT+TGG 0.295324 1:-19662464 MsG0180001340.01.T01:CDS
TTGAATTTGTCATGTAAATT+CGG 0.311912 1:+19660784 None:intergenic
GGTCTCAGTTCAAAATGAAT+TGG 0.323672 1:-19662600 MsG0180001340.01.T01:CDS
AAAAGACATAATATATTTAG+TGG 0.334344 1:-19660627 MsG0180001340.01.T01:CDS
TTCCTTTGTGGCTGGGATAA+TGG 0.345212 1:+19661208 None:intergenic
TATAATGAACATCTCGACTA+TGG 0.355043 1:-19660552 MsG0180001340.01.T01:CDS
CTCTGGGCATGGTTCCTTTG+TGG 0.384680 1:+19661196 None:intergenic
AATCTGACCCTCCTTTGTAT+TGG 0.385935 1:+19662497 None:intergenic
TAATATATTTAGTGGAAATT+CGG 0.396970 1:-19660619 MsG0180001340.01.T01:CDS
ATAGGAAACATACCAATCTA+TGG 0.397767 1:+19661835 None:intergenic
GGCATGGTTCCTTTGTGGCT+GGG 0.402651 1:+19661201 None:intergenic
TTAATACCTTGAAACTGCTC+TGG 0.427580 1:+19661179 None:intergenic
ATTTCCCTTATACTTCCAAA+TGG 0.427873 1:-19662622 MsG0180001340.01.T01:CDS
ATGATGTTTGGCTTCAGAAT+TGG 0.437267 1:-19662564 MsG0180001340.01.T01:CDS
TACAACGCGGTGATGATGTT+TGG 0.452314 1:-19662576 MsG0180001340.01.T01:CDS
GTCTCAGTTCAAAATGAATT+GGG 0.455385 1:-19662599 MsG0180001340.01.T01:CDS
GAATTTACATGACAAATTCA+AGG 0.456040 1:-19660782 MsG0180001340.01.T01:CDS
AAGGAACATGACTTGAAAGT+TGG 0.470859 1:-19661284 MsG0180001340.01.T01:CDS
TGTCTCTCTACGAATTTCCT+TGG 0.471061 1:+19662667 None:intergenic
ATTCGGTGGAGTTGAAAGTA+GGG 0.471281 1:-19660602 MsG0180001340.01.T01:CDS
AGTGAAACTAGGATTCTCAT+TGG 0.490637 1:+19661887 None:intergenic
TTTCCCTTATACTTCCAAAT+GGG 0.493769 1:-19662621 MsG0180001340.01.T01:CDS
TGAAAGTAGGGGAAGGAACA+TGG 0.498346 1:-19660590 MsG0180001340.01.T01:CDS
TCATGTTGAAGGCCATAGAT+TGG 0.499482 1:-19661847 MsG0180001340.01.T01:intron
AATTCGGTGGAGTTGAAAGT+AGG 0.502201 1:-19660603 MsG0180001340.01.T01:CDS
TTGTCAATGTTTGTCCCTTG+AGG 0.507957 1:+19662265 None:intergenic
AGACCCATTTGGAAGTATAA+GGG 0.512099 1:+19662618 None:intergenic
AGAGATTGCAAAGTAAAGAC+TGG 0.513081 1:-19660498 MsG0180001340.01.T01:CDS
CCATGCCCAGAGCAGTTTCA+AGG 0.516067 1:-19661185 MsG0180001340.01.T01:intron
AAGTATAAGGGAAATTGGAT+TGG 0.516318 1:+19662630 None:intergenic
ATGGCCTTCAACATGAGATC+GGG 0.518094 1:+19661854 None:intergenic
TGTGCAAAATCATGTGTTCA+AGG 0.521657 1:-19660448 MsG0180001340.01.T01:CDS
ACTGTTGCTGCTACACCTCA+AGG 0.523151 1:-19662280 MsG0180001340.01.T01:CDS
ATGGTAATTGTGAATGAAAG+TGG 0.526717 1:+19661227 None:intergenic
GGAAATTCGTAGAGAGACAT+TGG 0.530097 1:-19662663 MsG0180001340.01.T01:CDS
TTATCCCGATCTCATGTTGA+AGG 0.533386 1:-19661858 MsG0180001340.01.T01:CDS
GTGAAACTAGGATTCTCATT+GGG 0.534567 1:+19661888 None:intergenic
GACTATGGATGGTTCACTAA+AGG 0.536976 1:-19660537 MsG0180001340.01.T01:CDS
CCTTGAAACTGCTCTGGGCA+TGG 0.538312 1:+19661185 None:intergenic
TATGGCCTTCAACATGAGAT+CGG 0.541774 1:+19661853 None:intergenic
TATATTTAGTGGAAATTCGG+TGG 0.544355 1:-19660616 MsG0180001340.01.T01:CDS
CAATGATGAACAAGAAGCTA+AGG 0.548779 1:-19662416 MsG0180001340.01.T01:CDS
ATGGATGGTTCACTAAAGGC+TGG 0.558556 1:-19660533 MsG0180001340.01.T01:CDS
GATAATTTGAGAGTGAAACT+AGG 0.566910 1:+19661876 None:intergenic
ATGAACATCTCGACTATGGA+TGG 0.566956 1:-19660548 MsG0180001340.01.T01:CDS
TAATACCTTGAAACTGCTCT+GGG 0.569622 1:+19661180 None:intergenic
TTTGCGCGCTCTCTCAGATG+TGG 0.583692 1:-19662535 MsG0180001340.01.T01:CDS
TGTGCTTGCAGATGATTCCA+AGG 0.587783 1:-19662684 None:intergenic
TTTGGCTTCAGAATTGGAAG+CGG 0.599388 1:-19662558 MsG0180001340.01.T01:CDS
AATAGAGACAGAGGAGGCCG+CGG 0.610798 1:-19661975 MsG0180001340.01.T01:CDS
GCAGAGGCTAATAGAGACAG+AGG 0.621169 1:-19661984 MsG0180001340.01.T01:intron
TGTGTTGAGGTTCTGAATGA+CGG 0.625237 1:-19662358 MsG0180001340.01.T01:CDS
CAATGATTATGATTGTGTTG+AGG 0.625578 1:-19662371 MsG0180001340.01.T01:CDS
GGAAGGAACATGGTTTGTAG+AGG 0.629163 1:-19660580 MsG0180001340.01.T01:CDS
TTCGGTGGAGTTGAAAGTAG+GGG 0.634551 1:-19660601 MsG0180001340.01.T01:CDS
CTGTTGCTGCTACACCTCAA+GGG 0.643334 1:-19662279 MsG0180001340.01.T01:CDS
GTGGAGTTGAAAGTAGGGGA+AGG 0.644645 1:-19660597 MsG0180001340.01.T01:CDS
ATTTCTTAGCTTTCTTACCG+CGG 0.652512 1:+19661958 None:intergenic
TACCATTATCCCAGCCACAA+AGG 0.660933 1:-19661210 MsG0180001340.01.T01:CDS
GAGGCTAATAGAGACAGAGG+AGG 0.708768 1:-19661981 MsG0180001340.01.T01:CDS
AAAATGAATTGGGTACAACG+CGG 0.771281 1:-19662589 MsG0180001340.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGACATAATATATTTAG+TGG - Chr1:19662480-19662499 MsG0180001340.01.T01:CDS 15.0%
!! AAGAAAAAACATAAATAAAG+TGG + Chr1:19660998-19661017 None:intergenic 15.0%
!! AGAAAAAACATAAATAAAGT+GGG + Chr1:19660997-19661016 None:intergenic 15.0%
!! CTTGAAAAATAAAATTAAGA+TGG + Chr1:19662228-19662247 None:intergenic 15.0%
!! GGTATTAATTTCATTATATT+TGG - Chr1:19661943-19661962 MsG0180001340.01.T01:CDS 15.0%
!! TAATATATTTAGTGGAAATT+CGG - Chr1:19662488-19662507 MsG0180001340.01.T01:CDS 15.0%
!! AAAAAGAAAATCAACTCAAA+TGG - Chr1:19660797-19660816 MsG0180001340.01.T01:CDS 20.0%
!! AGTTTGATACATTTAAATAC+TGG - Chr1:19661562-19661581 MsG0180001340.01.T01:intron 20.0%
!! TAAAAACATGTACATTTGTA+TGG + Chr1:19660966-19660985 None:intergenic 20.0%
!! TATTAACAAGAGAAACATTT+GGG + Chr1:19661394-19661413 None:intergenic 20.0%
!! TTGAATTTGTCATGTAAATT+CGG + Chr1:19662326-19662345 None:intergenic 20.0%
!!! AGATTTTCATGTCATTATAT+TGG - Chr1:19660628-19660647 MsG0180001340.01.T01:CDS 20.0%
! ACTAACAGAAAACATATTCA+AGG - Chr1:19661432-19661451 MsG0180001340.01.T01:intron 25.0%
! AGAACAAAGAAAACAGTTTA+AGG + Chr1:19662280-19662299 None:intergenic 25.0%
! AGAGTAGTATTTACATTACA+TGG + Chr1:19662052-19662071 None:intergenic 25.0%
! ATTAACAAGAGAAACATTTG+GGG + Chr1:19661393-19661412 None:intergenic 25.0%
! ATTTGTTCTATATATGCAGT+TGG - Chr1:19662434-19662453 MsG0180001340.01.T01:CDS 25.0%
! CTATTAACAAGAGAAACATT+TGG + Chr1:19661395-19661414 None:intergenic 25.0%
! GAATTTACATGACAAATTCA+AGG - Chr1:19662325-19662344 MsG0180001340.01.T01:CDS 25.0%
! TATATTGGATGATAGTAGTT+TGG - Chr1:19660643-19660662 MsG0180001340.01.T01:CDS 25.0%
! TTAACTATATGTAATGTGCA+TGG + Chr1:19661598-19661617 None:intergenic 25.0%
!! ACATTTGTATGGATTAAAAG+TGG + Chr1:19660955-19660974 None:intergenic 25.0%
!! AGAGACTTTCATTTTACTAT+AGG - Chr1:19661338-19661357 MsG0180001340.01.T01:intron 25.0%
!! ATCATGGGAAAAAAAAGTAT+AGG + Chr1:19661293-19661312 None:intergenic 25.0%
!! TTGATTTTCTTTTTCTTGAG+GGG + Chr1:19660791-19660810 None:intergenic 25.0%
!! TTTTGTAACATCATTAGACA+AGG - Chr1:19662349-19662368 MsG0180001340.01.T01:CDS 25.0%
!!! AAATGTACATGTTTTTAGTC+TGG - Chr1:19660969-19660988 MsG0180001340.01.T01:intron 25.0%
!!! AATGTACATGTTTTTAGTCT+GGG - Chr1:19660970-19660989 MsG0180001340.01.T01:intron 25.0%
!!! AGTTGATTTTCTTTTTCTTG+AGG + Chr1:19660793-19660812 None:intergenic 25.0%
!!! CTTTTAGTTTTCCAATACAA+AGG - Chr1:19660599-19660618 MsG0180001340.01.T01:CDS 25.0%
!!! GTTGATTTTCTTTTTCTTGA+GGG + Chr1:19660792-19660811 None:intergenic 25.0%
AAATGCACAAAAACTGAACA+TGG - Chr1:19661168-19661187 MsG0180001340.01.T01:intron 30.0%
AAGTATAAGGGAAATTGGAT+TGG + Chr1:19660480-19660499 None:intergenic 30.0%
AATGCACAAAAACTGAACAT+GGG - Chr1:19661169-19661188 MsG0180001340.01.T01:intron 30.0%
ACATATTCCATATCTTCTTC+GGG + Chr1:19662145-19662164 None:intergenic 30.0%
ACATGAATGAGTTATTGCAA+GGG - Chr1:19661693-19661712 MsG0180001340.01.T01:intron 30.0%
AGCTAACAATAGAGACATTT+AGG - Chr1:19661527-19661546 MsG0180001340.01.T01:intron 30.0%
AGGTACAAAAATCACTATCA+TGG + Chr1:19661309-19661328 None:intergenic 30.0%
ATAGGAAACATACCAATCTA+TGG + Chr1:19661275-19661294 None:intergenic 30.0%
ATGGTAATTGTGAATGAAAG+TGG + Chr1:19661883-19661902 None:intergenic 30.0%
ATTTCCCTTATACTTCCAAA+TGG - Chr1:19660485-19660504 MsG0180001340.01.T01:CDS 30.0%
CAATGATTATGATTGTGTTG+AGG - Chr1:19660736-19660755 MsG0180001340.01.T01:intron 30.0%
CACATATTCCATATCTTCTT+CGG + Chr1:19662146-19662165 None:intergenic 30.0%
GAAGAAGATATGGAATATGT+GGG - Chr1:19662145-19662164 MsG0180001340.01.T01:intron 30.0%
GATAATTTGAGAGTGAAACT+AGG + Chr1:19661234-19661253 None:intergenic 30.0%
GGTACAAAAATCACTATCAT+GGG + Chr1:19661308-19661327 None:intergenic 30.0%
GTCTCAGTTCAAAATGAATT+GGG - Chr1:19660508-19660527 MsG0180001340.01.T01:CDS 30.0%
TACATGAATGAGTTATTGCA+AGG - Chr1:19661692-19661711 MsG0180001340.01.T01:intron 30.0%
TATAATGAACATCTCGACTA+TGG - Chr1:19662555-19662574 MsG0180001340.01.T01:CDS 30.0%
TATATTTAGTGGAAATTCGG+TGG - Chr1:19662491-19662510 MsG0180001340.01.T01:CDS 30.0%
TATTCGTTTGAAAACCATGT+AGG + Chr1:19661674-19661693 None:intergenic 30.0%
TTAACAAGAGAAACATTTGG+GGG + Chr1:19661392-19661411 None:intergenic 30.0%
TTTCCCTTATACTTCCAAAT+GGG - Chr1:19660486-19660505 MsG0180001340.01.T01:CDS 30.0%
! TAGTTTTCCAATACAAAGGA+GGG - Chr1:19660603-19660622 MsG0180001340.01.T01:CDS 30.0%
! TTGATTTTCAAATGCGTCTT+TGG + Chr1:19661504-19661523 None:intergenic 30.0%
! TTTGGAAGTATAAGGGAAAT+TGG + Chr1:19660485-19660504 None:intergenic 30.0%
!! AACAATTAGAAGTGTTGATG+AGG - Chr1:19661721-19661740 MsG0180001340.01.T01:intron 30.0%
!! CTGATTTTATTTGCACTTGT+TGG + Chr1:19662114-19662133 None:intergenic 30.0%
!! TTAGTTTTCCAATACAAAGG+AGG - Chr1:19660602-19660621 MsG0180001340.01.T01:CDS 30.0%
!!! AACTTGCCTGAATTTTTTGT+AGG + Chr1:19660892-19660911 None:intergenic 30.0%
!!! ACTTGCCTGAATTTTTTGTA+GGG + Chr1:19660891-19660910 None:intergenic 30.0%
!!! ATAGTTTTAACGTTTTGCAG+AGG - Chr1:19661107-19661126 MsG0180001340.01.T01:intron 30.0%
AAAATGAATTGGGTACAACG+CGG - Chr1:19660518-19660537 MsG0180001340.01.T01:CDS 35.0%
AAGGAACATGACTTGAAAGT+TGG - Chr1:19661823-19661842 MsG0180001340.01.T01:intron 35.0%
AGAGATTGCAAAGTAAAGAC+TGG - Chr1:19662609-19662628 MsG0180001340.01.T01:CDS 35.0%
AGTGAAACTAGGATTCTCAT+TGG + Chr1:19661223-19661242 None:intergenic 35.0%
ATTCAGGCAAGTTAATGCAA+CGG - Chr1:19660899-19660918 MsG0180001340.01.T01:intron 35.0%
CAATGATGAACAAGAAGCTA+AGG - Chr1:19660691-19660710 MsG0180001340.01.T01:intron 35.0%
CGAAGAAGATATGGAATATG+TGG - Chr1:19662144-19662163 MsG0180001340.01.T01:intron 35.0%
GGTCTCAGTTCAAAATGAAT+TGG - Chr1:19660507-19660526 MsG0180001340.01.T01:CDS 35.0%
GTGAAACTAGGATTCTCATT+GGG + Chr1:19661222-19661241 None:intergenic 35.0%
TAAATCATGACCTGAAACAG+AGG - Chr1:19661645-19661664 MsG0180001340.01.T01:intron 35.0%
TAATACCTTGAAACTGCTCT+GGG + Chr1:19661930-19661949 None:intergenic 35.0%
TGCAACCCTACAAAAAATTC+AGG - Chr1:19660883-19660902 MsG0180001340.01.T01:intron 35.0%
TGTGCAAAATCATGTGTTCA+AGG - Chr1:19662659-19662678 MsG0180001340.01.T01:CDS 35.0%
TTAATACCTTGAAACTGCTC+TGG + Chr1:19661931-19661950 None:intergenic 35.0%
! AGACCCATTTGGAAGTATAA+GGG + Chr1:19660492-19660511 None:intergenic 35.0%
! ATGATGTTTGGCTTCAGAAT+TGG - Chr1:19660543-19660562 MsG0180001340.01.T01:CDS 35.0%
! ATGGAATATGTGGGCAATTT+TGG - Chr1:19662154-19662173 MsG0180001340.01.T01:intron 35.0%
! ATTTCTTAGCTTTCTTACCG+CGG + Chr1:19661152-19661171 None:intergenic 35.0%
! ATTTTGAACTGAGACCCATT+TGG + Chr1:19660503-19660522 None:intergenic 35.0%
! GCAATGACAGTTTTTAATGC+AGG - Chr1:19661780-19661799 MsG0180001340.01.T01:intron 35.0%
! TGACAGTTTTTAATGCAGGT+TGG - Chr1:19661784-19661803 MsG0180001340.01.T01:intron 35.0%
! TGTCTTTTTAACAGCTCACT+TGG + Chr1:19662468-19662487 None:intergenic 35.0%
!! TGGTTGGAAGTCATTTTCAA+AGG - Chr1:19661804-19661823 MsG0180001340.01.T01:intron 35.0%
!!! AGTTTTTAATGCAGGTTGGT+TGG - Chr1:19661788-19661807 MsG0180001340.01.T01:intron 35.0%
AACAGCTGCCTTAAAACACA+AGG - Chr1:19662190-19662209 MsG0180001340.01.T01:intron 40.0%
AAGAGAAACATTTGGGGGTT+TGG + Chr1:19661387-19661406 None:intergenic 40.0%
AATCTGACCCTCCTTTGTAT+TGG + Chr1:19660613-19660632 None:intergenic 40.0%
ATGAACATCTCGACTATGGA+TGG - Chr1:19662559-19662578 MsG0180001340.01.T01:CDS 40.0%
GAATGAGTTATTGCAAGGGA+AGG - Chr1:19661697-19661716 MsG0180001340.01.T01:intron 40.0%
GACTATGGATGGTTCACTAA+AGG - Chr1:19662570-19662589 MsG0180001340.01.T01:CDS 40.0%
GGAAATTCGTAGAGAGACAT+TGG - Chr1:19660444-19660463 MsG0180001340.01.T01:CDS 40.0%
TATGGCCTTCAACATGAGAT+CGG + Chr1:19661257-19661276 None:intergenic 40.0%
TCATGTTGAAGGCCATAGAT+TGG - Chr1:19661260-19661279 MsG0180001340.01.T01:CDS 40.0%
TGAAAGTCTCTCACACAGTT+AGG + Chr1:19661329-19661348 None:intergenic 40.0%
TGTCTCTCTACGAATTTCCT+TGG + Chr1:19660443-19660462 None:intergenic 40.0%
TTATCCCGATCTCATGTTGA+AGG - Chr1:19661249-19661268 MsG0180001340.01.T01:CDS 40.0%
TTGTCAATGTTTGTCCCTTG+AGG + Chr1:19660845-19660864 None:intergenic 40.0%
! AATTCGGTGGAGTTGAAAGT+AGG - Chr1:19662504-19662523 MsG0180001340.01.T01:CDS 40.0%
! ATTCGGTGGAGTTGAAAGTA+GGG - Chr1:19662505-19662524 MsG0180001340.01.T01:CDS 40.0%
! GAGACCCATTTGGAAGTATA+AGG + Chr1:19660493-19660512 None:intergenic 40.0%
! TCCTGAGACCTTGTGTTTTA+AGG + Chr1:19662201-19662220 None:intergenic 40.0%
! TTTGGCTTCAGAATTGGAAG+CGG - Chr1:19660549-19660568 MsG0180001340.01.T01:CDS 40.0%
!! TAGAAGTGTTGATGAGGACA+GGG - Chr1:19661727-19661746 MsG0180001340.01.T01:intron 40.0%
!! TGTGTTGAGGTTCTGAATGA+CGG - Chr1:19660749-19660768 MsG0180001340.01.T01:intron 40.0%
!! TTAGAAGTGTTGATGAGGAC+AGG - Chr1:19661726-19661745 MsG0180001340.01.T01:intron 40.0%
ATGGATGGTTCACTAAAGGC+TGG - Chr1:19662574-19662593 MsG0180001340.01.T01:CDS 45.0%
ATGGCCTTCAACATGAGATC+GGG + Chr1:19661256-19661275 None:intergenic 45.0%
ATGTAGGTAGCCTCTGTTTC+AGG + Chr1:19661658-19661677 None:intergenic 45.0%
GACAATGCCCGAAGAAGATA+TGG - Chr1:19662135-19662154 MsG0180001340.01.T01:intron 45.0%
GCCTTAAAACACAAGGTCTC+AGG - Chr1:19662197-19662216 MsG0180001340.01.T01:intron 45.0%
TACCATTATCCCAGCCACAA+AGG - Chr1:19661897-19661916 MsG0180001340.01.T01:CDS 45.0%
TGAAACAGAGGCTACCTACA+TGG - Chr1:19661657-19661676 MsG0180001340.01.T01:intron 45.0%
TGAAAGTAGGGGAAGGAACA+TGG - Chr1:19662517-19662536 MsG0180001340.01.T01:CDS 45.0%
TTCCTTTGTGGCTGGGATAA+TGG + Chr1:19661902-19661921 None:intergenic 45.0%
TTCGGTGGAGTTGAAAGTAG+GGG - Chr1:19662506-19662525 MsG0180001340.01.T01:CDS 45.0%
! CTTTTTCTTGAGGGGTTGTC+TGG + Chr1:19660783-19660802 None:intergenic 45.0%
! GGAAGGAACATGGTTTGTAG+AGG - Chr1:19662527-19662546 MsG0180001340.01.T01:CDS 45.0%
! TACAACGCGGTGATGATGTT+TGG - Chr1:19660531-19660550 MsG0180001340.01.T01:CDS 45.0%
ACTGTTGCTGCTACACCTCA+AGG - Chr1:19660827-19660846 MsG0180001340.01.T01:intron 50.0%
CTGTTGCTGCTACACCTCAA+GGG - Chr1:19660828-19660847 MsG0180001340.01.T01:intron 50.0%
GAGGCTAATAGAGACAGAGG+AGG - Chr1:19661126-19661145 MsG0180001340.01.T01:intron 50.0%
GCAGAGGCTAATAGAGACAG+AGG - Chr1:19661123-19661142 MsG0180001340.01.T01:intron 50.0%
GTGGAGTTGAAAGTAGGGGA+AGG - Chr1:19662510-19662529 MsG0180001340.01.T01:CDS 50.0%
AATAGAGACAGAGGAGGCCG+CGG - Chr1:19661132-19661151 MsG0180001340.01.T01:intron 55.0%
CCATGCCCAGAGCAGTTTCA+AGG - Chr1:19661922-19661941 MsG0180001340.01.T01:CDS 55.0%
CTCTGCTTTGATCCCCGACA+AGG - Chr1:19662070-19662089 MsG0180001340.01.T01:intron 55.0%
CTCTGGGCATGGTTCCTTTG+TGG + Chr1:19661914-19661933 None:intergenic 55.0%
CTGCATGTCGACGACCTTGT+CGG + Chr1:19662087-19662106 None:intergenic 55.0%
GGCATGGTTCCTTTGTGGCT+GGG + Chr1:19661909-19661928 None:intergenic 55.0%
TGCATGTCGACGACCTTGTC+GGG + Chr1:19662086-19662105 None:intergenic 55.0%
TTTGCGCGCTCTCTCAGATG+TGG - Chr1:19660572-19660591 MsG0180001340.01.T01:CDS 55.0%
! CCTTGAAACTGCTCTGGGCA+TGG + Chr1:19661925-19661944 None:intergenic 55.0%
! GTGTTGATGAGGACAGGGCA+CGG - Chr1:19661732-19661751 MsG0180001340.01.T01:intron 55.0%
GCATGTCGACGACCTTGTCG+GGG + Chr1:19662085-19662104 None:intergenic 60.0%
GGGCATGGTTCCTTTGTGGC+TGG + Chr1:19661910-19661929 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 19660434 19662695 19660434 ID=MsG0180001340.01;Name=MsG0180001340.01
Chr1 mRNA 19660434 19662695 19660434 ID=MsG0180001340.01.T01;Parent=MsG0180001340.01;Name=MsG0180001340.01.T01;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|1|1|5|0|357
Chr1 exon 19662221 19662695 19662221 ID=MsG0180001340.01.T01:exon:26029;Parent=MsG0180001340.01.T01
Chr1 exon 19661848 19662002 19661848 ID=MsG0180001340.01.T01:exon:26028;Parent=MsG0180001340.01.T01
Chr1 exon 19661186 19661327 19661186 ID=MsG0180001340.01.T01:exon:26027;Parent=MsG0180001340.01.T01
Chr1 exon 19660759 19660817 19660759 ID=MsG0180001340.01.T01:exon:26026;Parent=MsG0180001340.01.T01
Chr1 exon 19660434 19660676 19660434 ID=MsG0180001340.01.T01:exon:26025;Parent=MsG0180001340.01.T01
Chr1 CDS 19662221 19662695 19662221 ID=MsG0180001340.01.T01:cds;Parent=MsG0180001340.01.T01
Chr1 CDS 19661848 19662002 19661848 ID=MsG0180001340.01.T01:cds;Parent=MsG0180001340.01.T01
Chr1 CDS 19661186 19661327 19661186 ID=MsG0180001340.01.T01:cds;Parent=MsG0180001340.01.T01
Chr1 CDS 19660759 19660817 19660759 ID=MsG0180001340.01.T01:cds;Parent=MsG0180001340.01.T01
Chr1 CDS 19660434 19660676 19660434 ID=MsG0180001340.01.T01:cds;Parent=MsG0180001340.01.T01
Gene Sequence

>MsG0180001340.01.T01

ATGATTCCAAGGAAATTCGTAGAGAGACATTGGAAAGATGTATCCAATCCAATTTCCCTTATACTTCCAAATGGGTCTCAGTTCAAAATGAATTGGGTACAACGCGGTGATGATGTTTGGCTTCAGAATTGGAAGCGGTTTGCGCGCTCTCTCAGATGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAGATTTTCATGTCATTATATTGGATGATAGTAGTTTGGAAATTGACTATTCATGTATGAGATGCAATGATGAACAAGAAGCTAAGGATAGTGATGATGATGACAATGACAATGATTATGATTGTGTTGAGGTTCTGAATGACGGTGAAAATACCAGACAACCCCTCAAGAAAAAGAAAATCAACTCAAATGGCATTGCTACTGTTGCTGCTACACCTCAAGGGACAAACATTGACAAGAGAAAAATTAATATCAATGCAACCCTACAAAAAATTCAGGCAAAGGCTAATAGAGACAGAGGAGGCCGCGGTAAGAAAGCTAAGAAATGCACAAAAACTGAACATGGGAATGAGAGAAGCTGCACAAATTATCATCCCAATGAGAATCCTAGTTTCACTCTCAAATTATCCCGATCTCATGTTGAAGGCCATAGATTGGTTGGTTGGAAGTCATTTTCAAAGGAACATGACTTGAAAGTTGGTGATGCATGTAAATTTGAGATGACTCAACGCGAACCACTTTCATTCACAATTACCATTATCCCAGCCACAAAGGAACCATGCCCAGAGCAGTTTCAAGATTCTGTAAGTCCGAATTTACATGACAAATTCAAGGTTTTTGTAACATCATTAGACAAGTTGGTTGTACTACCAAGTGAGCTGTTAAAAAGACATAATATATTTAGTGGAAATTCGGTGGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTATAATGAACATCTCGACTATGGATGGTTCACTAAAGGCTGGCAAGAGTTTCTGAGAGATTGCAAAGTAAAGACTGGAGACACTTGCTTGTTTGAGATGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGA
Protein sequence

>MsG0180001340.01.T01

MIPRKFVERHWKDVSNPISLILPNGSQFKMNWVQRGDDVWLQNWKRFARSLRCGDLLVFQYKGGSDFHVIILDDSSLEIDYSCMRCNDEQEAKDSDDDDNDNDYDCVEVLNDGENTRQPLKKKKINSNGIATVAATPQGTNIDKRKININATLQKIQAKANRDRGGRGKKAKKCTKTEHGNERSCTNYHPNENPSFTLKLSRSHVEGHRLVGWKSFSKEHDLKVGDACKFEMTQREPLSFTITIIPATKEPCPEQFQDSVSPNLHDKFKVFVTSLDKLVVLPSELLKRHNIFSGNSVELKVGEGTWFVEVSYNEHLDYGWFTKGWQEFLRDCKVKTGDTCLFEMIDVQNHVFKVSIV*