AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001341.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001341.01.T01 MTR_6g061070 70.796 452 111 7 1 445 33 470 0.0 623
MsG0180001341.01.T01 MTR_1g035520 56.494 308 110 8 1 295 87 383 2.12e-95 292
MsG0180001341.01.T01 MTR_1g035520 82.822 163 28 0 283 445 221 383 2.65e-91 282
MsG0180001341.01.T01 MTR_1g033740 61.963 163 39 2 1 163 37 176 1.41e-63 204
MsG0180001341.01.T01 MTR_1g035570 34.000 450 215 13 2 445 21 394 9.44e-62 206
MsG0180001341.01.T01 MTR_1g035620 35.347 447 222 14 2 444 25 408 1.04e-61 206
MsG0180001341.01.T01 MTR_1g035500 59.509 163 44 2 1 163 40 180 1.10e-61 199
MsG0180001341.01.T01 MTR_1g035480 61.350 163 38 2 1 163 32 169 1.48e-61 198
MsG0180001341.01.T01 MTR_1g035470 59.006 161 38 3 1 161 1 133 1.62e-53 176
MsG0180001341.01.T01 MTR_1g035510 53.846 169 54 2 1 169 1 145 1.66e-53 179
MsG0180001341.01.T01 MTR_1g035640 32.438 484 247 20 2 445 21 464 3.80e-53 185
MsG0180001341.01.T01 MTR_1g035490 36.513 304 158 13 144 445 58 328 1.51e-42 153
MsG0180001341.01.T01 MTR_1g050845 31.068 412 208 12 2 410 25 363 1.21e-39 152
MsG0180001341.01.T01 MTR_5g044670 29.573 328 190 10 1 318 31 327 1.28e-36 137
MsG0180001341.01.T01 MTR_1g108780 25.000 464 307 12 2 444 13 456 4.82e-31 124
MsG0180001341.01.T01 MTR_3g098790 28.947 304 180 8 1 298 28 301 2.67e-30 120
MsG0180001341.01.T01 MTR_7g050720 30.693 303 185 8 1 295 25 310 5.99e-29 116
MsG0180001341.01.T01 MTR_7g050710 29.276 304 185 8 2 298 29 309 2.43e-28 114
MsG0180001341.01.T01 MTR_8g103940 23.881 469 301 14 2 444 55 493 3.41e-28 117
MsG0180001341.01.T01 MTR_6g043890 28.814 295 170 11 2 286 31 295 6.75e-26 108
MsG0180001341.01.T01 MTR_3g061310 27.517 298 174 9 2 295 26 285 7.62e-25 103
MsG0180001341.01.T01 MTR_7g050580 27.393 303 177 7 1 298 28 292 1.01e-24 104
MsG0180001341.01.T01 MTR_3g061350 28.620 297 169 11 2 294 26 283 3.69e-24 102
MsG0180001341.01.T01 MTR_1g035650 32.394 213 102 6 2 209 25 200 4.84e-24 99.8
MsG0180001341.01.T01 MTR_4g119990 27.726 321 189 13 2 307 31 323 3.73e-23 100
MsG0180001341.01.T01 MTR_1g035460 26.101 318 208 10 1 309 1 300 6.76e-22 97.4
MsG0180001341.01.T01 MTR_3g061370 28.239 301 165 10 2 294 23 280 1.04e-21 95.1
MsG0180001341.01.T01 MTR_7g050590 25.574 305 197 7 1 298 1 282 7.84e-21 92.8
MsG0180001341.01.T01 MTR_3g061340 26.421 299 165 11 2 295 26 274 9.86e-21 92.0
MsG0180001341.01.T01 MTR_1g035540 36.364 154 46 4 218 371 2 103 9.82e-20 85.5
MsG0180001341.01.T01 MTR_7g050560 25.879 313 169 10 1 298 28 292 1.35e-18 86.7
MsG0180001341.01.T01 MTR_3g061320 26.846 298 170 14 2 295 26 279 2.38e-17 82.4
MsG0180001341.01.T01 MTR_1g021360 26.897 290 172 12 2 282 198 456 2.45e-16 81.3
MsG0180001341.01.T01 MTR_3g061330 30.734 218 114 8 2 216 26 209 1.22e-14 73.9
MsG0180001341.01.T01 MTR_1g021330 21.753 308 211 9 2 282 42 346 1.06e-13 72.8
MsG0180001341.01.T01 MTR_1g021400 22.742 299 207 10 2 282 46 338 1.49e-13 72.4
MsG0180001341.01.T01 MTR_1g021440 22.115 312 208 9 2 282 38 345 2.09e-13 72.0
MsG0180001341.01.T01 MTR_3g061300 31.481 108 66 3 188 294 22 122 1.58e-12 64.7
MsG0180001341.01.T01 MTR_3g061220 37.755 98 51 2 2 99 26 113 1.61e-12 64.3
MsG0180001341.01.T01 MTR_7g050640 43.590 78 41 2 1 75 28 105 6.25e-12 62.8
MsG0180001341.01.T01 MTR_3g061290 34.677 124 68 4 2 122 26 139 1.41e-11 63.9
MsG0180001341.01.T01 MTR_1g021435 22.884 319 194 12 2 282 38 342 7.84e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001341.01.T01 AT3G18990 25.157 318 206 8 2 293 22 333 2.26e-23 100
MsG0180001341.01.T01 AT3G18990 25.157 318 206 8 2 293 22 333 3.04e-23 101

Find 92 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAATATGCGGGCAATTT+TGG 0.164513 1:+19692576 MsG0180001341.01.T01:CDS
TTTGGAAGTTTAAGAGATAT+TGG 0.253059 1:-19689535 None:intergenic
TCCCATTCGAAAATTTATTC+TGG 0.254734 1:-19690909 None:intergenic
TTTATGCACTGAATCATCTT+AGG 0.270617 1:-19693386 None:intergenic
ATGGTATTTGGCTTCAAAAT+TGG 0.298035 1:+19689596 MsG0180001341.01.T01:CDS
CTATCACCTTCAACGTGATA+TGG 0.333665 1:-19690376 None:intergenic
AGTTTAAGAGATATTGGATT+TGG 0.342240 1:-19689529 None:intergenic
CTCCGGGCCTGGTTCCTTTG+TGG 0.344484 1:-19691041 None:intergenic
TGCAACGCAGTGATGGTATT+TGG 0.352991 1:+19689584 MsG0180001341.01.T01:CDS
AAGAAGCATGGTATATTTAG+TGG 0.374789 1:+19692903 MsG0180001341.01.T01:CDS
TATAATGAACATCTCGACTA+TGG 0.388378 1:+19692978 MsG0180001341.01.T01:CDS
GACAACACCCATAAAAGATA+TGG 0.388901 1:+19692557 MsG0180001341.01.T01:CDS
TCTTGATGAACCTTGAGAAT+TGG 0.396663 1:-19693301 None:intergenic
CCTTGAAACTTCTCCGGGCC+TGG 0.411612 1:-19691052 None:intergenic
TATCTCTCTACAAAATTCCT+TGG 0.444892 1:-19689493 None:intergenic
GGTCAGTGTGCAAAATGAAT+TGG 0.447786 1:+19689560 MsG0180001341.01.T01:CDS
TGCAACTGTGTTCTTCCCGT+TGG 0.450797 1:+19693197 MsG0180001341.01.T01:three_prime_UTR
AGCAATGCCATTTGAGTTGG+CGG 0.456539 1:-19689875 None:intergenic
ATATCTCTTAAACTTCCAAA+TGG 0.460593 1:+19689538 MsG0180001341.01.T01:CDS
GCAATACCTTGAAACTTCTC+CGG 0.461040 1:-19691058 None:intergenic
TGCTTCTTCAACAGCTCACT+TGG 0.461685 1:-19692888 None:intergenic
AAGAGAACCGCCAACTCAAA+TGG 0.462516 1:+19689868 MsG0180001341.01.T01:CDS
GAATTTACATGAGATGTTCA+AGG 0.464486 1:+19692747 MsG0180001341.01.T01:CDS
TTTGTTTCATTTAAACCAAC+GGG 0.465750 1:-19693212 None:intergenic
TGATGAACCTTGAGAATTGG+AGG 0.473528 1:-19693298 None:intergenic
GACTATGGTTGGTTCACTAA+AGG 0.474605 1:+19692993 MsG0180001341.01.T01:CDS
TGAGAGTAGGGGAAGGAACA+TGG 0.483751 1:+19692940 MsG0180001341.01.T01:CDS
TGTGAGAGATTGCAAAGTAA+AGG 0.489991 1:+19693028 MsG0180001341.01.T01:CDS
AGTGAAACTAGGATTCTCAT+TGG 0.490637 1:-19690341 None:intergenic
TGGAGGAAGCATCATACCTT+AGG 0.491721 1:-19693281 None:intergenic
TATCTCTTAAACTTCCAAAT+GGG 0.498661 1:+19689539 MsG0180001341.01.T01:CDS
ATAGTAATCGTGAATGAAAG+TGG 0.499531 1:-19691010 None:intergenic
CGTTGAAGGTGATAGAAGAT+TGG 0.499768 1:+19690384 MsG0180001341.01.T01:CDS
AACCACAAAGGAACCAGGCC+CGG 0.503145 1:+19691039 MsG0180001341.01.T01:CDS
CTTTGTTTCATTTAAACCAA+CGG 0.504412 1:-19693213 None:intergenic
TTATCACCATATCACGTTGA+AGG 0.509106 1:+19690370 MsG0180001341.01.T01:CDS
GTTGCTTACTGTTAATGTTG+TGG 0.518922 1:-19693364 None:intergenic
TTTGGCTTCAAAATTGGAAG+AGG 0.520115 1:+19689602 MsG0180001341.01.T01:CDS
TAATGGAAACACAGGAGGCA+TGG 0.520474 1:+19690261 MsG0180001341.01.T01:CDS
TGTGCAAAATCATGTGTTCA+AGG 0.521657 1:+19693082 MsG0180001341.01.T01:CDS
TATTCTTTCGAAAACCAACT+AGG 0.522446 1:-19690797 None:intergenic
CCAGGCCCGGAGAAGTTTCA+AGG 0.523708 1:+19691052 MsG0180001341.01.T01:CDS
CAATACCTTGAAACTTCTCC+GGG 0.525380 1:-19691057 None:intergenic
ATTCTCATTGGGATGCTCAA+TGG 0.528590 1:-19690329 None:intergenic
AGTAGCAATGCCATTTGAGT+TGG 0.533991 1:-19689878 None:intergenic
GTGAAACTAGGATTCTCATT+GGG 0.534567 1:-19690340 None:intergenic
CGTTGGTTTAAATGAAACAA+AGG 0.535554 1:+19693214 MsG0180001341.01.T01:three_prime_UTR
AGAGATTGCAAAGTAAAGGC+TGG 0.538378 1:+19693032 MsG0180001341.01.T01:CDS
AAGGCAACAATTAGAAGTGT+TGG 0.542696 1:+19690842 MsG0180001341.01.T01:CDS
AATGGAAACACAGGAGGCAT+GGG 0.543418 1:+19690262 MsG0180001341.01.T01:CDS
TACATGAATGAGTTATTGCA+AGG 0.543984 1:+19690818 MsG0180001341.01.T01:CDS
ATGAACATCTCGACTATGGT+TGG 0.544359 1:+19692982 MsG0180001341.01.T01:CDS
ATTCCGTGGAGTTGAGAGTA+GGG 0.547073 1:+19692928 MsG0180001341.01.T01:CDS
GTCAGTGTGCAAAATGAATT+GGG 0.549331 1:+19689561 MsG0180001341.01.T01:CDS
TGAAACAGGTGATACCTAGT+TGG 0.556983 1:+19690783 MsG0180001341.01.T01:intron
TGTTCTTGCAGATGATTCCA+AGG 0.559130 1:+19689476 None:intergenic
ATCTCAACCACAAAGGAACC+AGG 0.563537 1:+19691034 MsG0180001341.01.T01:CDS
ATAAAAGATATGGAATATGC+GGG 0.566495 1:+19692567 MsG0180001341.01.T01:CDS
TATTCTCTAATTACGAGACT+CGG 0.567482 1:+19693167 MsG0180001341.01.T01:three_prime_UTR
AATCTGACCCTCCTTTGTAT+CGG 0.568734 1:-19689663 None:intergenic
TATATTTAGTGGAAATTCCG+TGG 0.570238 1:+19692914 MsG0180001341.01.T01:CDS
AATTAGAAGTGTTGGTGAGG+AGG 0.570785 1:+19690850 MsG0180001341.01.T01:CDS
GATGCTTCCTCCAATTCTCA+AGG 0.572727 1:+19693291 MsG0180001341.01.T01:three_prime_UTR
ATGGTTGGTTCACTAAAGGT+TGG 0.573713 1:+19692997 MsG0180001341.01.T01:CDS
AAAATCAGAAAGCAGTCCTA+AGG 0.577450 1:+19693265 MsG0180001341.01.T01:three_prime_UTR
TAAGATACATCCGACAAGGT+TGG 0.581243 1:+19693242 MsG0180001341.01.T01:three_prime_UTR
AATTCCGTGGAGTTGAGAGT+AGG 0.585424 1:+19692927 MsG0180001341.01.T01:CDS
CATAAAAGATATGGAATATG+CGG 0.591347 1:+19692566 MsG0180001341.01.T01:CDS
GATAATATGAGAGTGAAACT+AGG 0.591398 1:-19690352 None:intergenic
TTGTCAATGTTAGTCCGTTG+AGG 0.593883 1:-19689913 None:intergenic
AACAATTAGAAGTGTTGGTG+AGG 0.594775 1:+19690847 MsG0180001341.01.T01:CDS
GCAGAGGCTAATGGAAACAC+AGG 0.596384 1:+19690253 MsG0180001341.01.T01:intron
CTACTACTGTTACACCTCAA+CGG 0.609207 1:+19689899 MsG0180001341.01.T01:CDS
TGATTAAAGATGATCGAGGA+AGG 0.610178 1:-19693329 None:intergenic
AGTGAGCTGTTGAAGAAGCA+TGG 0.617628 1:+19692891 MsG0180001341.01.T01:CDS
AATTGGGTGCAACGCAGTGA+TGG 0.620819 1:+19689577 MsG0180001341.01.T01:CDS
TTCCCCTACTCTCAACTCCA+CGG 0.627106 1:-19692931 None:intergenic
GGAAGGAACATGGTTTGTAG+AGG 0.629163 1:+19692950 MsG0180001341.01.T01:CDS
AAACTAAAAGATCTCCGCAT+CGG 0.638428 1:-19689639 None:intergenic
CGGGAACATAACTTGCAAGT+CGG 0.642213 1:+19690953 MsG0180001341.01.T01:CDS
GAATGAGTTATTGCAAGGGA+AGG 0.643476 1:+19690823 MsG0180001341.01.T01:CDS
TTTGCAAGTTTGCTCCGATG+CGG 0.646883 1:+19689625 MsG0180001341.01.T01:CDS
TACTATCATCTCAACCACAA+AGG 0.651551 1:+19691027 MsG0180001341.01.T01:CDS
TTCCGTGGAGTTGAGAGTAG+GGG 0.660437 1:+19692929 MsG0180001341.01.T01:CDS
ACATGAATGAGTTATTGCAA+GGG 0.661417 1:+19690819 MsG0180001341.01.T01:CDS
GTGGAGTTGAGAGTAGGGGA+AGG 0.685462 1:+19692933 MsG0180001341.01.T01:CDS
TCTTATAACATCATCAGACA+AGG 0.698207 1:+19692771 MsG0180001341.01.T01:CDS
GAGGCTAATGGAAACACAGG+AGG 0.702704 1:+19690256 MsG0180001341.01.T01:intron
TGGACATGTGCAGAAAACCA+AGG 0.707757 1:+19692516 MsG0180001341.01.T01:intron
TCACTAAGATACATCCGACA+AGG 0.711007 1:+19693238 MsG0180001341.01.T01:three_prime_UTR
TTGGTGAGGAGGATAGAACA+TGG 0.724838 1:+19690861 MsG0180001341.01.T01:CDS
GCTTTGATTAAAGATGATCG+AGG 0.729435 1:-19693333 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATATACAAATTTTTCA+AGG + Chr1:19692294-19692313 MsG0180001341.01.T01:intron 10.0%
!! AATGAAATCATCTAAAAAAA+AGG - Chr1:19693491-19693510 None:intergenic 15.0%
!! TAAACAGATGAATAATTAAA+AGG - Chr1:19689996-19690015 None:intergenic 15.0%
!! TGCTTGTAATAAATTAATTA+AGG - Chr1:19691729-19691748 None:intergenic 15.0%
!!! ATATTTTAAGGTTTAAATCT+TGG + Chr1:19691204-19691223 MsG0180001341.01.T01:intron 15.0%
!!! CAAATGTGTAAAATATTTTA+AGG + Chr1:19691192-19691211 MsG0180001341.01.T01:intron 15.0%
!!! CTAAGATTAATTTTTATACA+CGG + Chr1:19692353-19692372 MsG0180001341.01.T01:intron 15.0%
!!! CTATTTTATTTTACAGTTAT+TGG - Chr1:19692111-19692130 None:intergenic 15.0%
!! AACAAAGAAAACATAGTTTA+AGG - Chr1:19692700-19692719 None:intergenic 20.0%
!! TATTAACAAGAAAGACATTT+GGG - Chr1:19690518-19690537 None:intergenic 20.0%
!!! AATTTGTATGGATTAAAAAG+TGG - Chr1:19690083-19690102 None:intergenic 20.0%
!!! GAGAAAGAAGTTTATTTTAA+TGG - Chr1:19691703-19691722 None:intergenic 20.0%
!!! GATTTTAGTCATTCTAATAA+TGG + Chr1:19692218-19692237 MsG0180001341.01.T01:intron 20.0%
!!! TAAAAACTATTTTCAGCATT+TGG - Chr1:19690226-19690245 None:intergenic 20.0%
!!! TTTAAATATGTTTTTTGTCC+TGG - Chr1:19692405-19692424 None:intergenic 20.0%
! AACGCAATAAAATAGAACTT+GGG - Chr1:19691291-19691310 None:intergenic 25.0%
! ACTAACAGAAAACATATTCA+AGG + Chr1:19690556-19690575 MsG0180001341.01.T01:intron 25.0%
! AGAACTAAAAACATGTACTT+TGG - Chr1:19690107-19690126 None:intergenic 25.0%
! AGTTTAAGAGATATTGGATT+TGG - Chr1:19689532-19689551 None:intergenic 25.0%
! ATAAAAGATATGGAATATGC+GGG + Chr1:19692567-19692586 MsG0180001341.01.T01:CDS 25.0%
! ATATCTCTTAAACTTCCAAA+TGG + Chr1:19689538-19689557 MsG0180001341.01.T01:CDS 25.0%
! ATGTTAATGTTACTGTCATT+AGG + Chr1:19691323-19691342 MsG0180001341.01.T01:intron 25.0%
! ATTAACAAGAAAGACATTTG+GGG - Chr1:19690517-19690536 None:intergenic 25.0%
! CATAAAAGATATGGAATATG+CGG + Chr1:19692566-19692585 MsG0180001341.01.T01:CDS 25.0%
! CTATTAACAAGAAAGACATT+TGG - Chr1:19690519-19690538 None:intergenic 25.0%
! TATCTCTTAAACTTCCAAAT+GGG + Chr1:19689539-19689558 MsG0180001341.01.T01:CDS 25.0%
! TGTTAATGTTACTGTCATTA+GGG + Chr1:19691324-19691343 MsG0180001341.01.T01:intron 25.0%
! TTTGGAAGTTTAAGAGATAT+TGG - Chr1:19689538-19689557 None:intergenic 25.0%
! TTTGTTCATATATATGCAGT+TGG + Chr1:19692857-19692876 MsG0180001341.01.T01:intron 25.0%
! TTTGTTTCATTTAAACCAAC+GGG - Chr1:19693215-19693234 None:intergenic 25.0%
!! AATAGATGATAGTGTGTTTA+AGG + Chr1:19692152-19692171 MsG0180001341.01.T01:intron 25.0%
!! ATAGATGATAGTGTGTTTAA+GGG + Chr1:19692153-19692172 MsG0180001341.01.T01:intron 25.0%
!! ATCCAGAATAAATTTTCGAA+TGG + Chr1:19690907-19690926 MsG0180001341.01.T01:CDS 25.0%
!! ATGTACTTTGGTAATTTGTA+TGG - Chr1:19690095-19690114 None:intergenic 25.0%
!! CAAAATTTGAGATGAACTAA+GGG - Chr1:19690044-19690063 None:intergenic 25.0%
!! CTTTGTTTCATTTAAACCAA+CGG - Chr1:19693216-19693235 None:intergenic 25.0%
!! GCATATTCCATATCTTTTAT+GGG - Chr1:19692567-19692586 None:intergenic 25.0%
!! TCCAGAATAAATTTTCGAAT+GGG + Chr1:19690908-19690927 MsG0180001341.01.T01:CDS 25.0%
!! TTAGTATTTTCAATGTCACT+AGG - Chr1:19689832-19689851 None:intergenic 25.0%
!! TTTGATTGATTGTAGTTTGT+TGG - Chr1:19691176-19691195 None:intergenic 25.0%
!!! ATTGTCATGTTTACCTTTTT+TGG + Chr1:19691657-19691676 MsG0180001341.01.T01:intron 25.0%
!!! TACAAAAACACATGGTTTTA+GGG + Chr1:19692620-19692639 MsG0180001341.01.T01:CDS 25.0%
!!! TAGTTTTTAAAGTTTTGCAG+AGG + Chr1:19690237-19690256 MsG0180001341.01.T01:intron 25.0%
!!! TGCTTGTTTTGTCATTTTAA+GGG + Chr1:19693125-19693144 MsG0180001341.01.T01:three_prime_UTR 25.0%
!!! TTGCTTGTTTTGTCATTTTA+AGG + Chr1:19693124-19693143 MsG0180001341.01.T01:three_prime_UTR 25.0%
AACTAGAAGAAGAGACATTT+AGG + Chr1:19690660-19690679 MsG0180001341.01.T01:intron 30.0%
AATAGAAAAAATGACTGACG+TGG + Chr1:19692126-19692145 MsG0180001341.01.T01:intron 30.0%
ACACAAACAACAGTAATAAG+TGG - Chr1:19691520-19691539 None:intergenic 30.0%
ACATGAATGAGTTATTGCAA+GGG + Chr1:19690819-19690838 MsG0180001341.01.T01:CDS 30.0%
ACGCAATAAAATAGAACTTG+GGG - Chr1:19691290-19691309 None:intergenic 30.0%
ATAGTAATCGTGAATGAAAG+TGG - Chr1:19691013-19691032 None:intergenic 30.0%
CAACGCAATAAAATAGAACT+TGG - Chr1:19691292-19691311 None:intergenic 30.0%
CGTAACAAATACTTGTTCAA+CGG + Chr1:19691387-19691406 MsG0180001341.01.T01:intron 30.0%
GAATTTACATGAGATGTTCA+AGG + Chr1:19692747-19692766 MsG0180001341.01.T01:CDS 30.0%
GAGATATGAAAAGCCAAAAA+AGG - Chr1:19691673-19691692 None:intergenic 30.0%
GATAATATGAGAGTGAAACT+AGG - Chr1:19690355-19690374 None:intergenic 30.0%
TACATGAATGAGTTATTGCA+AGG + Chr1:19690818-19690837 MsG0180001341.01.T01:CDS 30.0%
TATAATGAACATCTCGACTA+TGG + Chr1:19692978-19692997 MsG0180001341.01.T01:CDS 30.0%
TATATTTAGTGGAAATTCCG+TGG + Chr1:19692914-19692933 MsG0180001341.01.T01:CDS 30.0%
TATCTCTCTACAAAATTCCT+TGG - Chr1:19689496-19689515 None:intergenic 30.0%
TATTCTCTAATTACGAGACT+CGG + Chr1:19693167-19693186 MsG0180001341.01.T01:three_prime_UTR 30.0%
TATTCTTTCGAAAACCAACT+AGG - Chr1:19690800-19690819 None:intergenic 30.0%
TCCCATTCGAAAATTTATTC+TGG - Chr1:19690912-19690931 None:intergenic 30.0%
TCTTATAACATCATCAGACA+AGG + Chr1:19692771-19692790 MsG0180001341.01.T01:CDS 30.0%
TTTATGCACTGAATCATCTT+AGG - Chr1:19693389-19693408 None:intergenic 30.0%
! AACTATTTTCAGCATTTGGA+AGG - Chr1:19690222-19690241 None:intergenic 30.0%
! AAGAAGCATGGTATATTTAG+TGG + Chr1:19692903-19692922 MsG0180001341.01.T01:CDS 30.0%
! ATAAATTTTCGAATGGGAAG+TGG + Chr1:19690914-19690933 MsG0180001341.01.T01:CDS 30.0%
! ATGGTATTTGGCTTCAAAAT+TGG + Chr1:19689596-19689615 MsG0180001341.01.T01:CDS 30.0%
! CAAGTTCTATTTTATTGCGT+TGG + Chr1:19691290-19691309 MsG0180001341.01.T01:intron 30.0%
! CCAAAATTTGAGATGAACTA+AGG - Chr1:19690045-19690064 None:intergenic 30.0%
! CCTTAGTTCATCTCAAATTT+TGG + Chr1:19690042-19690061 MsG0180001341.01.T01:intron 30.0%
! CGCATATTCCATATCTTTTA+TGG - Chr1:19692568-19692587 None:intergenic 30.0%
! CGTTGAACAAGTATTTGTTA+CGG - Chr1:19691389-19691408 None:intergenic 30.0%
! GGAATTTTGTAGAGAGATAT+TGG + Chr1:19689497-19689516 MsG0180001341.01.T01:CDS 30.0%
! GTACAAAAACACATGGTTTT+AGG + Chr1:19692619-19692638 MsG0180001341.01.T01:CDS 30.0%
!! ATTTTGGAGATGGAATTTCA+AGG + Chr1:19692592-19692611 MsG0180001341.01.T01:CDS 30.0%
!! CGTTGGTTTAAATGAAACAA+AGG + Chr1:19693214-19693233 MsG0180001341.01.T01:three_prime_UTR 30.0%
!!! ACAAAAACACATGGTTTTAG+GGG + Chr1:19692621-19692640 MsG0180001341.01.T01:CDS 30.0%
!!! CTTTTAGTTTTCCGATACAA+AGG + Chr1:19689652-19689671 MsG0180001341.01.T01:CDS 30.0%
!!! GCTTGTTTTGTCATTTTAAG+GGG + Chr1:19693126-19693145 MsG0180001341.01.T01:three_prime_UTR 30.0%
AAAATCAGAAAGCAGTCCTA+AGG + Chr1:19693265-19693284 MsG0180001341.01.T01:three_prime_UTR 35.0%
AAACTAAAAGATCTCCGCAT+CGG - Chr1:19689642-19689661 None:intergenic 35.0%
AACAACAGTAATAAGTGGAC+AGG - Chr1:19691515-19691534 None:intergenic 35.0%
ACAAATACTTGTTCAACGGT+CGG + Chr1:19691391-19691410 MsG0180001341.01.T01:intron 35.0%
AGAGAGAAGAAACAAGAACA+GGG + Chr1:19691781-19691800 MsG0180001341.01.T01:intron 35.0%
AGTGAAACTAGGATTCTCAT+TGG - Chr1:19690344-19690363 None:intergenic 35.0%
ATTCATGCATGAAATGTGCA+AGG - Chr1:19690730-19690749 None:intergenic 35.0%
CAAATCAGTTTCACATGGTT+TGG + Chr1:19691443-19691462 MsG0180001341.01.T01:intron 35.0%
CACACACATAGCTATATACA+TGG - Chr1:19692821-19692840 None:intergenic 35.0%
CGCAATAAAATAGAACTTGG+GGG - Chr1:19691289-19691308 None:intergenic 35.0%
CTAAAAGTGATATATCTGCC+AGG + Chr1:19692384-19692403 MsG0180001341.01.T01:intron 35.0%
GACAACACCCATAAAAGATA+TGG + Chr1:19692557-19692576 MsG0180001341.01.T01:CDS 35.0%
GCAATAAAATAGAACTTGGG+GGG - Chr1:19691288-19691307 None:intergenic 35.0%
GCTTTGATTAAAGATGATCG+AGG - Chr1:19693336-19693355 None:intergenic 35.0%
GTCAGTGTGCAAAATGAATT+GGG + Chr1:19689561-19689580 MsG0180001341.01.T01:CDS 35.0%
GTGAAACTAGGATTCTCATT+GGG - Chr1:19690343-19690362 None:intergenic 35.0%
GTTGCTTACTGTTAATGTTG+TGG - Chr1:19693367-19693386 None:intergenic 35.0%
TACTATCATCTCAACCACAA+AGG + Chr1:19691027-19691046 MsG0180001341.01.T01:CDS 35.0%
TCTTGATGAACCTTGAGAAT+TGG - Chr1:19693304-19693323 None:intergenic 35.0%
TGAGACAAATCAGTTTCACA+TGG + Chr1:19691438-19691457 MsG0180001341.01.T01:intron 35.0%
TGATTAAAGATGATCGAGGA+AGG - Chr1:19693332-19693351 None:intergenic 35.0%
TGTGAGAGATTGCAAAGTAA+AGG + Chr1:19693028-19693047 MsG0180001341.01.T01:CDS 35.0%
TGTGCAAAATCATGTGTTCA+AGG + Chr1:19693082-19693101 MsG0180001341.01.T01:CDS 35.0%
TTATCACCATATCACGTTGA+AGG + Chr1:19690370-19690389 MsG0180001341.01.T01:CDS 35.0%
TTCTGTCAAAATGGAATGAG+CGG + Chr1:19691481-19691500 MsG0180001341.01.T01:intron 35.0%
TTTATACCATGACCTGAAAC+AGG + Chr1:19690769-19690788 MsG0180001341.01.T01:intron 35.0%
! AAGGCAACAATTAGAAGTGT+TGG + Chr1:19690842-19690861 MsG0180001341.01.T01:CDS 35.0%
! ACTTACCAGAAACTTTTTGC+TGG - Chr1:19689963-19689982 None:intergenic 35.0%
! AGAGGCTTTCATTTTACTAG+AGG + Chr1:19690462-19690481 MsG0180001341.01.T01:intron 35.0%
! AGTATTTGTTACGGTTACGT+CGG - Chr1:19691380-19691399 None:intergenic 35.0%
! CTTACCAGAAACTTTTTGCT+GGG - Chr1:19689962-19689981 None:intergenic 35.0%
! GTGTTGTCTCTGATTTTTCT+TGG - Chr1:19692545-19692564 None:intergenic 35.0%
! TAAAGTTTTGCAGAGGCTAA+TGG + Chr1:19690244-19690263 MsG0180001341.01.T01:intron 35.0%
! TAGTTTTCCGATACAAAGGA+GGG + Chr1:19689656-19689675 MsG0180001341.01.T01:CDS 35.0%
! TTCTGATTTTCCAACCTTGT+CGG - Chr1:19693255-19693274 None:intergenic 35.0%
! TTTGGCTTCAAAATTGGAAG+AGG + Chr1:19689602-19689621 MsG0180001341.01.T01:CDS 35.0%
!! AACAATTAGAAGTGTTGGTG+AGG + Chr1:19690847-19690866 MsG0180001341.01.T01:CDS 35.0%
!! CTGAGGTTTTATGACAGTAA+GGG - Chr1:19692044-19692063 None:intergenic 35.0%
!! TGAGGTTTTATGACAGTAAG+GGG - Chr1:19692043-19692062 None:intergenic 35.0%
!! TTAGTTTTCCGATACAAAGG+AGG + Chr1:19689655-19689674 MsG0180001341.01.T01:CDS 35.0%
AACCTCAGGATGAAGGATAA+TGG + Chr1:19692056-19692075 MsG0180001341.01.T01:intron 40.0%
AACTAGGTATCACCTGTTTC+AGG - Chr1:19690784-19690803 None:intergenic 40.0%
AATCTGACCCTCCTTTGTAT+CGG - Chr1:19689666-19689685 None:intergenic 40.0%
ACATACATTGGACAGTGTGT+AGG - Chr1:19691604-19691623 None:intergenic 40.0%
ACATGTCCACAAACTTCTCA+GGG - Chr1:19692505-19692524 None:intergenic 40.0%
AGAGATTGCAAAGTAAAGGC+TGG + Chr1:19693032-19693051 MsG0180001341.01.T01:CDS 40.0%
AGGAGCTGTACAAAAACACA+TGG + Chr1:19692612-19692631 MsG0180001341.01.T01:CDS 40.0%
AGGGATCTACTGAAGAAGTT+GGG - Chr1:19692486-19692505 None:intergenic 40.0%
ATGAACATCTCGACTATGGT+TGG + Chr1:19692982-19693001 MsG0180001341.01.T01:CDS 40.0%
ATGTATGTGTGCCATCAAAC+AGG + Chr1:19691616-19691635 MsG0180001341.01.T01:intron 40.0%
ATTCTCATTGGGATGCTCAA+TGG - Chr1:19690332-19690351 None:intergenic 40.0%
CAATACCTTGAAACTTCTCC+GGG - Chr1:19691060-19691079 None:intergenic 40.0%
CAGAGAGAAGAAACAAGAAC+AGG + Chr1:19691780-19691799 MsG0180001341.01.T01:intron 40.0%
CAGTAATAAGTGGACAGGTT+CGG - Chr1:19691510-19691529 None:intergenic 40.0%
CCTTACTGTCATAAAACCTC+AGG + Chr1:19692042-19692061 MsG0180001341.01.T01:intron 40.0%
CGTTGAAGGTGATAGAAGAT+TGG + Chr1:19690384-19690403 MsG0180001341.01.T01:CDS 40.0%
CTACTACTGTTACACCTCAA+CGG + Chr1:19689899-19689918 MsG0180001341.01.T01:CDS 40.0%
CTATCACCTTCAACGTGATA+TGG - Chr1:19690379-19690398 None:intergenic 40.0%
GAATGAGTTATTGCAAGGGA+AGG + Chr1:19690823-19690842 MsG0180001341.01.T01:CDS 40.0%
GAGATGAGAGATATACAGAG+AGG + Chr1:19691822-19691841 MsG0180001341.01.T01:intron 40.0%
GCAATACCTTGAAACTTCTC+CGG - Chr1:19691061-19691080 None:intergenic 40.0%
GGTCAGTGTGCAAAATGAAT+TGG + Chr1:19689560-19689579 MsG0180001341.01.T01:CDS 40.0%
GTCATAAAACCTCAGGATGA+AGG + Chr1:19692049-19692068 MsG0180001341.01.T01:intron 40.0%
GTTGTGGGTAGTGTAAATTG+TGG + Chr1:19692082-19692101 MsG0180001341.01.T01:intron 40.0%
TAAGATACATCCGACAAGGT+TGG + Chr1:19693242-19693261 MsG0180001341.01.T01:three_prime_UTR 40.0%
TCACTAAGATACATCCGACA+AGG + Chr1:19693238-19693257 MsG0180001341.01.T01:three_prime_UTR 40.0%
TGAAACAGGTGATACCTAGT+TGG + Chr1:19690783-19690802 MsG0180001341.01.T01:intron 40.0%
TGATGAACCTTGAGAATTGG+AGG - Chr1:19693301-19693320 None:intergenic 40.0%
TGTATGTGTGCCATCAAACA+GGG + Chr1:19691617-19691636 MsG0180001341.01.T01:intron 40.0%
TTCTTTGGTGAGCAGTTGTT+GGG + Chr1:19691987-19692006 MsG0180001341.01.T01:intron 40.0%
TTGTCAATGTTAGTCCGTTG+AGG - Chr1:19689916-19689935 None:intergenic 40.0%
TTTGTACCAAACTGTGTGAG+AGG + Chr1:19690444-19690463 MsG0180001341.01.T01:intron 40.0%
! AGTAGCAATGCCATTTGAGT+TGG - Chr1:19689881-19689900 None:intergenic 40.0%
! ATGGAATATGCGGGCAATTT+TGG + Chr1:19692576-19692595 MsG0180001341.01.T01:CDS 40.0%
! ATGGTTGGTTCACTAAAGGT+TGG + Chr1:19692997-19693016 MsG0180001341.01.T01:CDS 40.0%
! ATTTTCGAATGGGAAGTGGT+TGG + Chr1:19690918-19690937 MsG0180001341.01.T01:CDS 40.0%
! ATTTTGCACACTGACCCATT+TGG - Chr1:19689556-19689575 None:intergenic 40.0%
! CAGTTTCACATGGTTTGGAA+CGG + Chr1:19691448-19691467 MsG0180001341.01.T01:intron 40.0%
! CTGATTTTTCTTGGACTCCT+TGG - Chr1:19692536-19692555 None:intergenic 40.0%
! CTGTTCTTGTTTCTTCTCTC+TGG - Chr1:19691782-19691801 None:intergenic 40.0%
! GACTATGGTTGGTTCACTAA+AGG + Chr1:19692993-19693012 MsG0180001341.01.T01:CDS 40.0%
! GGTTCACGTTTTCTGATCTA+CGG + Chr1:19691961-19691980 MsG0180001341.01.T01:intron 40.0%
! GTTCACGTTTTCTGATCTAC+GGG + Chr1:19691962-19691981 MsG0180001341.01.T01:intron 40.0%
! GTTTGATGGCACACATACAT+TGG - Chr1:19691616-19691635 None:intergenic 40.0%
! TCAGGATGAAGGATAATGGT+GGG + Chr1:19692060-19692079 MsG0180001341.01.T01:intron 40.0%
! TTGTTTCTTCTCTCTGGTAG+TGG - Chr1:19691776-19691795 None:intergenic 40.0%
!! AATTAGAAGTGTTGGTGAGG+AGG + Chr1:19690850-19690869 MsG0180001341.01.T01:CDS 40.0%
!! CCTGAGGTTTTATGACAGTA+AGG - Chr1:19692045-19692064 None:intergenic 40.0%
!! GTGGTTGGAAGTCATTTTCA+CGG + Chr1:19690933-19690952 MsG0180001341.01.T01:CDS 40.0%
!! TGGTTGGAAGTCATTTTCAC+GGG + Chr1:19690934-19690953 MsG0180001341.01.T01:CDS 40.0%
AAACTGACGTTGAAACGGTC+GGG + Chr1:19691935-19691954 MsG0180001341.01.T01:intron 45.0%
AAGAGAACCGCCAACTCAAA+TGG + Chr1:19689868-19689887 MsG0180001341.01.T01:CDS 45.0%
AATTCCGTGGAGTTGAGAGT+AGG + Chr1:19692927-19692946 MsG0180001341.01.T01:CDS 45.0%
AGTGAGCTGTTGAAGAAGCA+TGG + Chr1:19692891-19692910 MsG0180001341.01.T01:CDS 45.0%
ATCTCAACCACAAAGGAACC+AGG + Chr1:19691034-19691053 MsG0180001341.01.T01:CDS 45.0%
ATGTGTAGAGTGTGTGTTCG+TGG + Chr1:19692177-19692196 MsG0180001341.01.T01:intron 45.0%
ATTCCGTGGAGTTGAGAGTA+GGG + Chr1:19692928-19692947 MsG0180001341.01.T01:CDS 45.0%
CACATGTCCACAAACTTCTC+AGG - Chr1:19692506-19692525 None:intergenic 45.0%
CACCATTATCCTTCATCCTG+AGG - Chr1:19692061-19692080 None:intergenic 45.0%
CAGGGATCTACTGAAGAAGT+TGG - Chr1:19692487-19692506 None:intergenic 45.0%
CGAAAGCGGTTCTGTCAAAA+TGG + Chr1:19691472-19691491 MsG0180001341.01.T01:intron 45.0%
GAAACTGACGTTGAAACGGT+CGG + Chr1:19691934-19691953 MsG0180001341.01.T01:intron 45.0%
GACCGTTTCAACGTCAGTTT+CGG - Chr1:19691935-19691954 None:intergenic 45.0%
GATGCTTCCTCCAATTCTCA+AGG + Chr1:19693291-19693310 MsG0180001341.01.T01:three_prime_UTR 45.0%
GCAACCCAGCAAAAAGTTTC+TGG + Chr1:19689955-19689974 MsG0180001341.01.T01:CDS 45.0%
GGGATCTACTGAAGAAGTTG+GGG - Chr1:19692485-19692504 None:intergenic 45.0%
GTAGATCCCTGAGAAGTTTG+TGG + Chr1:19692496-19692515 MsG0180001341.01.T01:intron 45.0%
GTTACGGTTACGTCGGATTT+CGG - Chr1:19691373-19691392 None:intergenic 45.0%
GTTCTTTGGTGAGCAGTTGT+TGG + Chr1:19691986-19692005 MsG0180001341.01.T01:intron 45.0%
TAATGGAAACACAGGAGGCA+TGG + Chr1:19690261-19690280 MsG0180001341.01.T01:CDS 45.0%
TCAAGACACACCCTGTTTGA+TGG - Chr1:19691630-19691649 None:intergenic 45.0%
TCTGATCTACGGGTGTTCTT+TGG + Chr1:19691972-19691991 MsG0180001341.01.T01:intron 45.0%
TGAAAGCCTCTCACACAGTT+TGG - Chr1:19690453-19690472 None:intergenic 45.0%
TGCAACGCAGTGATGGTATT+TGG + Chr1:19689584-19689603 MsG0180001341.01.T01:CDS 45.0%
TGCTTCTTCAACAGCTCACT+TGG - Chr1:19692891-19692910 None:intergenic 45.0%
TGGACATGTGCAGAAAACCA+AGG + Chr1:19692516-19692535 MsG0180001341.01.T01:intron 45.0%
TTGGTGAGGAGGATAGAACA+TGG + Chr1:19690861-19690880 MsG0180001341.01.T01:CDS 45.0%
! AATGGAAACACAGGAGGCAT+GGG + Chr1:19690262-19690281 MsG0180001341.01.T01:CDS 45.0%
! CGGGAACATAACTTGCAAGT+CGG + Chr1:19690953-19690972 MsG0180001341.01.T01:CDS 45.0%
! CTCAGGATGAAGGATAATGG+TGG + Chr1:19692059-19692078 MsG0180001341.01.T01:intron 45.0%
! GCGGTTCTCTTTTTCTTGAG+GGG - Chr1:19689859-19689878 None:intergenic 45.0%
! GGAAGGAACATGGTTTGTAG+AGG + Chr1:19692950-19692969 MsG0180001341.01.T01:CDS 45.0%
! GGCGGTTCTCTTTTTCTTGA+GGG - Chr1:19689860-19689879 None:intergenic 45.0%
! GTATCACCTGTTTCAGGTCA+TGG - Chr1:19690778-19690797 None:intergenic 45.0%
! TGACGGGTCTAACGGAATAA+CGG - Chr1:19691908-19691927 None:intergenic 45.0%
! TGGCGGTTCTCTTTTTCTTG+AGG - Chr1:19689861-19689880 None:intergenic 45.0%
! TTTGCAAGTTTGCTCCGATG+CGG + Chr1:19689625-19689644 MsG0180001341.01.T01:CDS 45.0%
!! AGCAATGCCATTTGAGTTGG+CGG - Chr1:19689878-19689897 None:intergenic 45.0%
!! GAAGGATAATGGTGGGTTGT+GGG + Chr1:19692067-19692086 MsG0180001341.01.T01:intron 45.0%
!! TATGCGGGCAATTTTGGAGA+TGG + Chr1:19692582-19692601 MsG0180001341.01.T01:CDS 45.0%
!! TGAAGGATAATGGTGGGTTG+TGG + Chr1:19692066-19692085 MsG0180001341.01.T01:intron 45.0%
!! TGGAGGAAGCATCATACCTT+AGG - Chr1:19693284-19693303 None:intergenic 45.0%
!! TTCTTCTCTCTGGTAGTGGT+GGG - Chr1:19691772-19691791 None:intergenic 45.0%
!! TTTCTTCTCTCTGGTAGTGG+TGG - Chr1:19691773-19691792 None:intergenic 45.0%
!! AAAAATATACATAAATAAAA+TGG - Chr1:19690134-19690153 None:intergenic 5.0%
!! AAAATATACATAAATAAAAT+GGG - Chr1:19690133-19690152 None:intergenic 5.0%
AATTGGGTGCAACGCAGTGA+TGG + Chr1:19689577-19689596 MsG0180001341.01.T01:CDS 50.0%
CGCCGAAACTGACGTTGAAA+CGG + Chr1:19691930-19691949 MsG0180001341.01.T01:intron 50.0%
CGTTTCAACGTCAGTTTCGG+CGG - Chr1:19691932-19691951 None:intergenic 50.0%
GACGGGTCTAACGGAATAAC+GGG - Chr1:19691907-19691926 None:intergenic 50.0%
GAGGCTAATGGAAACACAGG+AGG + Chr1:19690256-19690275 MsG0180001341.01.T01:intron 50.0%
GCAGAGGCTAATGGAAACAC+AGG + Chr1:19690253-19690272 MsG0180001341.01.T01:intron 50.0%
GTTTCAACGTCAGTTTCGGC+GGG - Chr1:19691931-19691950 None:intergenic 50.0%
TACAACCGAGACAAACCACC+TGG + Chr1:19691877-19691896 MsG0180001341.01.T01:intron 50.0%
TGAGAGTAGGGGAAGGAACA+TGG + Chr1:19692940-19692959 MsG0180001341.01.T01:CDS 50.0%
TGCAACTGTGTTCTTCCCGT+TGG + Chr1:19693197-19693216 MsG0180001341.01.T01:three_prime_UTR 50.0%
TTCCCCTACTCTCAACTCCA+CGG - Chr1:19692934-19692953 None:intergenic 50.0%
TTCCGTGGAGTTGAGAGTAG+GGG + Chr1:19692929-19692948 MsG0180001341.01.T01:CDS 50.0%
! TGGTTTGGAACGGACGAAAG+CGG + Chr1:19691458-19691477 MsG0180001341.01.T01:intron 50.0%
!! GGTCTAACGGAATAACGGGT+GGG - Chr1:19691903-19691922 None:intergenic 50.0%
AACCACAAAGGAACCAGGCC+CGG + Chr1:19691039-19691058 MsG0180001341.01.T01:CDS 55.0%
CGGTTACGTCGGATTTCGGT+CGG - Chr1:19691369-19691388 None:intergenic 55.0%
GACGTTGAAACGGTCGGGAA+TGG + Chr1:19691940-19691959 MsG0180001341.01.T01:intron 55.0%
GTGGAGTTGAGAGTAGGGGA+AGG + Chr1:19692933-19692952 MsG0180001341.01.T01:CDS 55.0%
GTTCAACGGTCGGATGCGTA+CGG + Chr1:19691401-19691420 MsG0180001341.01.T01:intron 55.0%
TGACAGTAAGGGGTGAGCAC+CGG - Chr1:19692033-19692052 None:intergenic 55.0%
TTCAACGGTCGGATGCGTAC+GGG + Chr1:19691402-19691421 MsG0180001341.01.T01:intron 55.0%
! GGGTCTAACGGAATAACGGG+TGG - Chr1:19691904-19691923 None:intergenic 55.0%
!! AACTTGGGGGGACTAGCTGA+AGG - Chr1:19691276-19691295 None:intergenic 55.0%
!! ACTTGGGGGGACTAGCTGAA+GGG - Chr1:19691275-19691294 None:intergenic 55.0%
ACGTCAGTTTCGGCGGGTGA+CGG - Chr1:19691925-19691944 None:intergenic 60.0%
CCAGGCCCGGAGAAGTTTCA+AGG + Chr1:19691052-19691071 MsG0180001341.01.T01:CDS 60.0%
CCTTGAAACTTCTCCGGGCC+TGG - Chr1:19691055-19691074 None:intergenic 60.0%
! GTGGGCCAGGTGGTTTGTCT+CGG - Chr1:19691885-19691904 None:intergenic 60.0%
!! AACGGAATAACGGGTGGGCC+AGG - Chr1:19691898-19691917 None:intergenic 60.0%
!! AGTAAGGGGTGAGCACCGGT+CGG - Chr1:19692029-19692048 None:intergenic 60.0%
CGAATCCGCCCGTAACCGAC+CGG + Chr1:19692011-19692030 MsG0180001341.01.T01:intron 65.0%
CGTCAGTTTCGGCGGGTGAC+GGG - Chr1:19691924-19691943 None:intergenic 65.0%
CTCCGGGCCTGGTTCCTTTG+TGG - Chr1:19691044-19691063 None:intergenic 65.0%
GGTCGGATGCGTACGGGCTT+CGG + Chr1:19691408-19691427 MsG0180001341.01.T01:intron 65.0%
TCTCACACTTCACGCGCGCG+TGG - Chr1:19691554-19691573 None:intergenic 65.0%
! CGGTCGGTTACGGGCGGATT+CGG - Chr1:19692013-19692032 None:intergenic 65.0%
!! GGAATAACGGGTGGGCCAGG+TGG - Chr1:19691895-19691914 None:intergenic 65.0%
!! GGGTGAGCACCGGTCGGTTA+CGG - Chr1:19692023-19692042 None:intergenic 65.0%
!! GGTGAGCACCGGTCGGTTAC+GGG - Chr1:19692022-19692041 None:intergenic 65.0%
!! TCGGCGGGTGACGGGTCTAA+CGG - Chr1:19691916-19691935 None:intergenic 65.0%
!! GAGCACCGGTCGGTTACGGG+CGG - Chr1:19692019-19692038 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 19689487 19693540 19689487 ID=MsG0180001341.01;Name=MsG0180001341.01
Chr1 mRNA 19689487 19693540 19689487 ID=MsG0180001341.01.T01;Parent=MsG0180001341.01;Name=MsG0180001341.01.T01;_AED=0.07;_eAED=0.07;_QI=0|0.8|0.66|1|1|1|6|422|445
Chr1 exon 19689487 19689976 19689487 ID=MsG0180001341.01.T01:exon:25983;Parent=MsG0180001341.01.T01
Chr1 exon 19690257 19690405 19690257 ID=MsG0180001341.01.T01:exon:25984;Parent=MsG0180001341.01.T01
Chr1 exon 19690791 19691073 19690791 ID=MsG0180001341.01.T01:exon:25985;Parent=MsG0180001341.01.T01
Chr1 exon 19692529 19692642 19692529 ID=MsG0180001341.01.T01:exon:25986;Parent=MsG0180001341.01.T01
Chr1 exon 19692734 19692792 19692734 ID=MsG0180001341.01.T01:exon:25987;Parent=MsG0180001341.01.T01
Chr1 exon 19692876 19693540 19692876 ID=MsG0180001341.01.T01:exon:25988;Parent=MsG0180001341.01.T01
Chr1 CDS 19689487 19689976 19689487 ID=MsG0180001341.01.T01:cds;Parent=MsG0180001341.01.T01
Chr1 CDS 19690257 19690405 19690257 ID=MsG0180001341.01.T01:cds;Parent=MsG0180001341.01.T01
Chr1 CDS 19690791 19691073 19690791 ID=MsG0180001341.01.T01:cds;Parent=MsG0180001341.01.T01
Chr1 CDS 19692529 19692642 19692529 ID=MsG0180001341.01.T01:cds;Parent=MsG0180001341.01.T01
Chr1 CDS 19692734 19692792 19692734 ID=MsG0180001341.01.T01:cds;Parent=MsG0180001341.01.T01
Chr1 CDS 19692876 19693118 19692876 ID=MsG0180001341.01.T01:cds;Parent=MsG0180001341.01.T01
Chr1 three_prime_UTR 19693119 19693540 19693119 ID=MsG0180001341.01.T01:three_prime_utr;Parent=MsG0180001341.01.T01
Gene Sequence

>MsG0180001341.01.T01

ATGATTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTACCAAATCCAATATCTCTTAAACTTCCAAATGGGTCAGTGTGCAAAATGAATTGGGTGCAACGCAGTGATGGTATTTGGCTTCAAAATTGGAAGAGGTTTGCAAGTTTGCTCCGATGCGGAGATCTTTTAGTTTTCCGATACAAAGGAGGGTCAGATTTTCATGTCATTGTATTAGATGATAGTCAATTAGAAATTGACTATTCAAGTATGAGATGCAACGACGATCAAGAAAATACTAAAGAGAGTGATGATGATGATGATGATGATGATGACGACGACGATTATGAGTGTGTTGAGATTCCTAGTGACATTGAAAATACTAAAATTCCCCTCAAGAAAAAGAGAACCGCCAACTCAAATGGCATTGCTACTACTACTGTTACACCTCAACGGACTAACATTGACAAGAGAAAAACTAATATCAATGCAACCCAGCAAAAAGTTTCTGAGGCTAATGGAAACACAGGAGGCATGGGTAAGAAAGCTAAAAATGCACAAAAACTAAATGAGAGAAGTTGCGCCATTGAGCATCCCAATGAGAATCCTAGTTTCACTCTCATATTATCACCATATCACGTTGAAGGTGATAGAAGATTGGTGATACCTAGTTGGTTTTCGAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGTGAGGAGGATAGAACATGGCACGTGACGTTAAACTTTAATGAATCCAGAATAAATTTTCGAATGGGAAGTGGTTGGAAGTCATTTTCACGGGAACATAACTTGCAAGTCGGTGACGTGTGTATGTTTCAGATGACTCGACGCAAACCACTTTCATTCACGATTACTATCATCTCAACCACAAAGGAACCAGGCCCGGAGAAGTTTCAAGAAAACCAAGGAGTCCAAGAAAAATCAGAGACAACACCCATAAAAGATATGGAATATGCGGGCAATTTTGGAGATGGAATTTCAAGGAGCTGTACAAAAACACATGGTTTTAGGGATTCTGTAAGTCTGAATTTACATGAGATGTTCAAGGTTCTTATAACATCATCAGACAAGTTGGTTGTACTACCAAGTGAGCTGTTGAAGAAGCATGGTATATTTAGTGGAAATTCCGTGGAGTTGAGAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAATTATAATGAACATCTCGACTATGGTTGGTTCACTAAAGGTTGGCAAGAATTTGTGAGAGATTGCAAAGTAAAGGCTGGAGACACTTGCTTGTTTGAGACGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGA
Protein sequence

>MsG0180001341.01.T01

MIPRNFVERYWKDVPNPISLKLPNGSVCKMNWVQRSDGIWLQNWKRFASLLRCGDLLVFRYKGGSDFHVIVLDDSQLEIDYSSMRCNDDQENTKESDDDDDDDDDDDDYECVEIPSDIENTKIPLKKKRTANSNGIATTTVTPQRTNIDKRKTNINATQQKVSEANGNTGGMGKKAKNAQKLNERSCAIEHPNENPSFTLILSPYHVEGDRRLVIPSWFSKEYMNELLQGKATIRSVGEEDRTWHVTLNFNESRINFRMGSGWKSFSREHNLQVGDVCMFQMTRRKPLSFTITIISTTKEPGPEKFQENQGVQEKSETTPIKDMEYAGNFGDGISRSCTKTHGFRDSVSLNLHEMFKVLITSSDKLVVLPSELLKKHGIFSGNSVELRVGEGTWFVEVNYNEHLDYGWFTKGWQEFVRDCKVKAGDTCLFETIDVQNHVFKVSIV*