Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001571.01.T01 | XP_003589766.1 | 94.211 | 190 | 8 | 1 | 1 | 187 | 1 | 190 | 1.78E-125 | 361 |
MsG0180001571.01.T02 | XP_003589766.1 | 93.889 | 180 | 8 | 1 | 1 | 177 | 11 | 190 | 2.38E-117 | 340 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001571.01.T01 | Q84W66 | 61.589 | 151 | 49 | 2 | 4 | 148 | 56 | 203 | 5.16E-57 | 182 |
MsG0180001571.01.T02 | Q84W66 | 61.806 | 144 | 46 | 2 | 1 | 138 | 63 | 203 | 5.66E-53 | 171 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001571.01.T01 | G7ICG4 | 94.211 | 190 | 8 | 1 | 1 | 187 | 1 | 190 | 8.49e-126 | 361 |
MsG0180001571.01.T02 | G7ICG4 | 93.889 | 180 | 8 | 1 | 1 | 177 | 11 | 190 | 1.14e-117 | 340 |
Gene ID | Type | Classification |
---|---|---|
MsG0180001571.01.T02 | TF | NF-YB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001571.01.T01 | MTR_1g039040 | 94.211 | 190 | 8 | 1 | 1 | 187 | 1 | 190 | 2.15e-129 | 361 |
MsG0180001571.01.T01 | MTR_4g133952 | 81.188 | 101 | 19 | 0 | 4 | 104 | 56 | 156 | 2.60e-58 | 183 |
MsG0180001571.01.T01 | MTR_7g061270 | 65.625 | 96 | 33 | 0 | 4 | 99 | 24 | 119 | 4.15e-47 | 152 |
MsG0180001571.01.T01 | MTR_2g026710 | 62.745 | 102 | 38 | 0 | 2 | 103 | 13 | 114 | 7.41e-47 | 151 |
MsG0180001571.01.T01 | MTR_7g100650 | 65.625 | 96 | 33 | 0 | 4 | 99 | 24 | 119 | 8.45e-47 | 151 |
MsG0180001571.01.T01 | MTR_5g095740 | 62.037 | 108 | 41 | 0 | 5 | 112 | 22 | 129 | 9.31e-47 | 152 |
MsG0180001571.01.T01 | MTR_3g058980 | 68.421 | 95 | 30 | 0 | 5 | 99 | 26 | 120 | 2.05e-46 | 151 |
MsG0180001571.01.T01 | MTR_8g091720 | 62.745 | 102 | 38 | 0 | 5 | 106 | 27 | 128 | 4.82e-45 | 148 |
MsG0180001571.01.T01 | MTR_1g072790 | 54.264 | 129 | 52 | 2 | 5 | 126 | 28 | 156 | 5.04e-45 | 147 |
MsG0180001571.01.T01 | MTR_8g093920 | 60.606 | 99 | 39 | 0 | 5 | 103 | 39 | 137 | 1.12e-43 | 145 |
MsG0180001571.01.T01 | MTR_0392s0020 | 62.500 | 96 | 36 | 0 | 2 | 97 | 14 | 109 | 2.25e-42 | 139 |
MsG0180001571.01.T01 | MTR_4g119500 | 63.830 | 94 | 34 | 0 | 4 | 97 | 20 | 113 | 3.95e-42 | 138 |
MsG0180001571.01.T01 | MTR_1g088860 | 62.500 | 96 | 36 | 0 | 4 | 99 | 34 | 129 | 1.04e-41 | 139 |
MsG0180001571.01.T01 | MTR_4g133938 | 57.426 | 101 | 41 | 1 | 2 | 100 | 13 | 113 | 1.45e-39 | 132 |
MsG0180001571.01.T01 | MTR_1g083070 | 51.087 | 92 | 45 | 0 | 6 | 97 | 4 | 95 | 2.09e-31 | 110 |
MsG0180001571.01.T01 | MTR_1g029070 | 51.579 | 95 | 46 | 0 | 5 | 99 | 51 | 145 | 4.49e-31 | 111 |
MsG0180001571.01.T01 | MTR_5g095900 | 47.917 | 96 | 47 | 1 | 2 | 94 | 9 | 104 | 1.22e-24 | 95.1 |
MsG0180001571.01.T01 | MTR_1g028480 | 57.353 | 68 | 29 | 0 | 36 | 103 | 19 | 86 | 8.24e-23 | 88.2 |
MsG0180001571.01.T01 | MTR_1g029100 | 43.421 | 76 | 43 | 0 | 11 | 86 | 7 | 82 | 7.21e-19 | 77.4 |
MsG0180001571.01.T01 | MTR_2g056000 | 30.337 | 89 | 62 | 0 | 6 | 94 | 41 | 129 | 7.45e-16 | 72.4 |
MsG0180001571.01.T01 | MTR_4g112380 | 28.723 | 94 | 67 | 0 | 1 | 94 | 6 | 99 | 8.22e-15 | 68.9 |
MsG0180001571.01.T01 | MTR_5g095860 | 38.554 | 83 | 41 | 1 | 11 | 93 | 21 | 93 | 9.76e-12 | 60.8 |
MsG0180001571.01.T02 | MTR_1g039040 | 93.889 | 180 | 8 | 1 | 1 | 177 | 11 | 190 | 2.89e-121 | 340 |
MsG0180001571.01.T02 | MTR_4g133952 | 82.979 | 94 | 16 | 0 | 1 | 94 | 63 | 156 | 2.97e-54 | 172 |
MsG0180001571.01.T02 | MTR_5g095740 | 61.765 | 102 | 39 | 0 | 1 | 102 | 28 | 129 | 3.92e-43 | 142 |
MsG0180001571.01.T02 | MTR_3g058980 | 68.539 | 89 | 28 | 0 | 1 | 89 | 32 | 120 | 8.87e-43 | 141 |
MsG0180001571.01.T02 | MTR_7g061270 | 65.169 | 89 | 31 | 0 | 1 | 89 | 31 | 119 | 1.15e-42 | 140 |
MsG0180001571.01.T02 | MTR_2g026710 | 63.441 | 93 | 34 | 0 | 1 | 93 | 22 | 114 | 1.86e-42 | 140 |
MsG0180001571.01.T02 | MTR_7g100650 | 65.169 | 89 | 31 | 0 | 1 | 89 | 31 | 119 | 1.87e-42 | 140 |
MsG0180001571.01.T02 | MTR_8g091720 | 63.542 | 96 | 35 | 0 | 1 | 96 | 33 | 128 | 8.48e-42 | 139 |
MsG0180001571.01.T02 | MTR_1g072790 | 53.659 | 123 | 50 | 2 | 1 | 116 | 34 | 156 | 1.71e-41 | 137 |
MsG0180001571.01.T02 | MTR_8g093920 | 61.290 | 93 | 36 | 0 | 1 | 93 | 45 | 137 | 1.11e-40 | 137 |
MsG0180001571.01.T02 | MTR_4g119500 | 64.368 | 87 | 31 | 0 | 1 | 87 | 27 | 113 | 7.06e-39 | 129 |
MsG0180001571.01.T02 | MTR_1g088860 | 62.921 | 89 | 33 | 0 | 1 | 89 | 41 | 129 | 1.56e-38 | 130 |
MsG0180001571.01.T02 | MTR_4g133938 | 60.000 | 90 | 36 | 0 | 1 | 90 | 24 | 113 | 1.97e-38 | 128 |
MsG0180001571.01.T02 | MTR_0392s0020 | 63.218 | 87 | 32 | 0 | 1 | 87 | 23 | 109 | 4.33e-38 | 127 |
MsG0180001571.01.T02 | MTR_1g029070 | 55.056 | 89 | 40 | 0 | 1 | 89 | 57 | 145 | 4.19e-31 | 111 |
MsG0180001571.01.T02 | MTR_1g083070 | 51.724 | 87 | 42 | 0 | 1 | 87 | 9 | 95 | 3.24e-30 | 107 |
MsG0180001571.01.T02 | MTR_5g095900 | 51.807 | 83 | 40 | 0 | 2 | 84 | 22 | 104 | 1.70e-24 | 94.4 |
MsG0180001571.01.T02 | MTR_1g028480 | 57.353 | 68 | 29 | 0 | 26 | 93 | 19 | 86 | 6.20e-23 | 88.2 |
MsG0180001571.01.T02 | MTR_1g029100 | 43.421 | 76 | 43 | 0 | 1 | 76 | 7 | 82 | 6.18e-19 | 77.4 |
MsG0180001571.01.T02 | MTR_2g056000 | 30.952 | 84 | 58 | 0 | 1 | 84 | 46 | 129 | 4.15e-15 | 70.1 |
MsG0180001571.01.T02 | MTR_4g112380 | 29.762 | 84 | 59 | 0 | 1 | 84 | 16 | 99 | 1.28e-13 | 65.5 |
MsG0180001571.01.T02 | MTR_5g095860 | 38.554 | 83 | 41 | 1 | 1 | 83 | 21 | 93 | 8.40e-12 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001571.01.T01 | AT5G47670 | 61.589 | 151 | 49 | 2 | 4 | 148 | 27 | 174 | 2.58e-58 | 182 |
MsG0180001571.01.T01 | AT5G47670 | 61.589 | 151 | 49 | 2 | 4 | 148 | 56 | 203 | 5.27e-58 | 182 |
MsG0180001571.01.T01 | AT5G47670 | 61.589 | 151 | 49 | 2 | 4 | 148 | 56 | 203 | 5.27e-58 | 182 |
MsG0180001571.01.T01 | AT1G21970 | 69.231 | 130 | 22 | 2 | 5 | 116 | 58 | 187 | 5.23e-57 | 179 |
MsG0180001571.01.T01 | AT4G14540 | 65.686 | 102 | 35 | 0 | 2 | 103 | 17 | 118 | 1.32e-48 | 155 |
MsG0180001571.01.T01 | AT2G38880 | 64.583 | 96 | 34 | 0 | 4 | 99 | 19 | 114 | 2.57e-46 | 149 |
MsG0180001571.01.T01 | AT2G38880 | 64.583 | 96 | 34 | 0 | 4 | 99 | 19 | 114 | 3.09e-46 | 149 |
MsG0180001571.01.T01 | AT2G38880 | 64.583 | 96 | 34 | 0 | 4 | 99 | 19 | 114 | 3.09e-46 | 149 |
MsG0180001571.01.T01 | AT2G38880 | 64.583 | 96 | 34 | 0 | 4 | 99 | 19 | 114 | 3.09e-46 | 149 |
MsG0180001571.01.T01 | AT5G47640 | 64.356 | 101 | 36 | 0 | 5 | 105 | 26 | 126 | 6.64e-46 | 150 |
MsG0180001571.01.T01 | AT2G38880 | 49.324 | 148 | 62 | 2 | 4 | 151 | 19 | 153 | 1.06e-45 | 148 |
MsG0180001571.01.T01 | AT2G38880 | 49.324 | 148 | 62 | 2 | 4 | 151 | 19 | 153 | 1.06e-45 | 148 |
MsG0180001571.01.T01 | AT3G53340 | 64.583 | 96 | 34 | 0 | 4 | 99 | 27 | 122 | 1.39e-45 | 148 |
MsG0180001571.01.T01 | AT3G53340 | 64.583 | 96 | 34 | 0 | 4 | 99 | 27 | 122 | 1.39e-45 | 148 |
MsG0180001571.01.T01 | AT2G37060 | 63.542 | 96 | 35 | 0 | 4 | 99 | 28 | 123 | 2.18e-45 | 148 |
MsG0180001571.01.T01 | AT2G37060 | 63.542 | 96 | 35 | 0 | 4 | 99 | 28 | 123 | 2.18e-45 | 148 |
MsG0180001571.01.T01 | AT2G37060 | 63.542 | 96 | 35 | 0 | 4 | 99 | 28 | 123 | 2.18e-45 | 148 |
MsG0180001571.01.T01 | AT2G38880 | 63.830 | 94 | 34 | 0 | 4 | 97 | 19 | 112 | 3.23e-45 | 146 |
MsG0180001571.01.T01 | AT2G38880 | 65.217 | 92 | 32 | 0 | 4 | 95 | 19 | 110 | 2.50e-44 | 143 |
MsG0180001571.01.T01 | AT3G53340 | 63.366 | 101 | 35 | 1 | 4 | 102 | 27 | 127 | 3.00e-44 | 144 |
MsG0180001571.01.T01 | AT3G53340 | 63.366 | 101 | 35 | 1 | 4 | 102 | 27 | 127 | 3.00e-44 | 144 |
MsG0180001571.01.T01 | AT3G53340 | 65.217 | 92 | 32 | 0 | 4 | 95 | 27 | 118 | 6.81e-44 | 142 |
MsG0180001571.01.T01 | AT2G38880 | 65.217 | 92 | 32 | 0 | 4 | 95 | 19 | 110 | 1.37e-43 | 142 |
MsG0180001571.01.T01 | AT2G38880 | 65.217 | 92 | 32 | 0 | 4 | 95 | 19 | 110 | 1.37e-43 | 142 |
MsG0180001571.01.T01 | AT2G38880 | 65.217 | 92 | 32 | 0 | 4 | 95 | 19 | 110 | 1.37e-43 | 142 |
MsG0180001571.01.T01 | AT2G13570 | 63.158 | 95 | 35 | 0 | 5 | 99 | 35 | 129 | 2.45e-43 | 144 |
MsG0180001571.01.T01 | AT2G47810 | 62.500 | 96 | 36 | 0 | 4 | 99 | 49 | 144 | 3.03e-41 | 137 |
MsG0180001571.01.T01 | AT1G09030 | 53.191 | 94 | 44 | 0 | 6 | 99 | 3 | 96 | 5.98e-35 | 120 |
MsG0180001571.01.T01 | AT5G08190 | 31.481 | 108 | 73 | 1 | 1 | 107 | 6 | 113 | 1.09e-15 | 71.2 |
MsG0180001571.01.T01 | AT5G08190 | 32.558 | 86 | 58 | 0 | 1 | 86 | 6 | 91 | 1.71e-15 | 70.9 |
MsG0180001571.01.T01 | AT5G23090 | 28.723 | 94 | 67 | 0 | 1 | 94 | 6 | 99 | 2.80e-15 | 70.1 |
MsG0180001571.01.T01 | AT5G23090 | 28.723 | 94 | 67 | 0 | 1 | 94 | 6 | 99 | 2.89e-15 | 70.1 |
MsG0180001571.01.T01 | AT5G23090 | 28.723 | 94 | 67 | 0 | 1 | 94 | 6 | 99 | 2.89e-15 | 70.1 |
MsG0180001571.01.T01 | AT5G23090 | 28.723 | 94 | 67 | 0 | 1 | 94 | 6 | 99 | 2.89e-15 | 70.1 |
MsG0180001571.01.T01 | AT5G23090 | 30.986 | 71 | 49 | 0 | 24 | 94 | 16 | 86 | 8.52e-11 | 57.8 |
MsG0180001571.01.T02 | AT5G47670 | 61.806 | 144 | 46 | 2 | 1 | 138 | 34 | 174 | 2.39e-54 | 171 |
MsG0180001571.01.T02 | AT5G47670 | 61.806 | 144 | 46 | 2 | 1 | 138 | 63 | 203 | 5.77e-54 | 171 |
MsG0180001571.01.T02 | AT5G47670 | 61.806 | 144 | 46 | 2 | 1 | 138 | 63 | 203 | 5.77e-54 | 171 |
MsG0180001571.01.T02 | AT1G21970 | 67.742 | 124 | 22 | 2 | 1 | 106 | 64 | 187 | 4.64e-52 | 166 |
MsG0180001571.01.T02 | AT4G14540 | 66.667 | 93 | 31 | 0 | 1 | 93 | 26 | 118 | 1.57e-44 | 145 |
MsG0180001571.01.T02 | AT5G47640 | 64.211 | 95 | 34 | 0 | 1 | 95 | 32 | 126 | 2.55e-42 | 140 |
MsG0180001571.01.T02 | AT3G53340 | 65.169 | 89 | 31 | 0 | 1 | 89 | 34 | 122 | 1.56e-41 | 137 |
MsG0180001571.01.T02 | AT3G53340 | 65.169 | 89 | 31 | 0 | 1 | 89 | 34 | 122 | 1.56e-41 | 137 |
MsG0180001571.01.T02 | AT2G38880 | 64.045 | 89 | 32 | 0 | 1 | 89 | 26 | 114 | 2.05e-41 | 136 |
MsG0180001571.01.T02 | AT2G38880 | 64.045 | 89 | 32 | 0 | 1 | 89 | 26 | 114 | 2.38e-41 | 136 |
MsG0180001571.01.T02 | AT2G38880 | 64.045 | 89 | 32 | 0 | 1 | 89 | 26 | 114 | 2.38e-41 | 136 |
MsG0180001571.01.T02 | AT2G38880 | 64.045 | 89 | 32 | 0 | 1 | 89 | 26 | 114 | 2.38e-41 | 136 |
MsG0180001571.01.T02 | AT2G37060 | 64.045 | 89 | 32 | 0 | 1 | 89 | 35 | 123 | 2.73e-41 | 137 |
MsG0180001571.01.T02 | AT2G37060 | 64.045 | 89 | 32 | 0 | 1 | 89 | 35 | 123 | 2.73e-41 | 137 |
MsG0180001571.01.T02 | AT2G37060 | 64.045 | 89 | 32 | 0 | 1 | 89 | 35 | 123 | 2.73e-41 | 137 |
MsG0180001571.01.T02 | AT2G38880 | 48.227 | 141 | 60 | 2 | 1 | 141 | 26 | 153 | 8.26e-41 | 135 |
MsG0180001571.01.T02 | AT2G38880 | 48.227 | 141 | 60 | 2 | 1 | 141 | 26 | 153 | 8.26e-41 | 135 |
MsG0180001571.01.T02 | AT2G38880 | 63.218 | 87 | 32 | 0 | 1 | 87 | 26 | 112 | 2.69e-40 | 133 |
MsG0180001571.01.T02 | AT2G13570 | 64.045 | 89 | 32 | 0 | 1 | 89 | 41 | 129 | 3.11e-40 | 135 |
MsG0180001571.01.T02 | AT3G53340 | 63.830 | 94 | 32 | 1 | 1 | 92 | 34 | 127 | 4.89e-40 | 133 |
MsG0180001571.01.T02 | AT3G53340 | 63.830 | 94 | 32 | 1 | 1 | 92 | 34 | 127 | 4.89e-40 | 133 |
MsG0180001571.01.T02 | AT3G53340 | 65.882 | 85 | 29 | 0 | 1 | 85 | 34 | 118 | 9.67e-40 | 131 |
MsG0180001571.01.T02 | AT2G38880 | 64.706 | 85 | 30 | 0 | 1 | 85 | 26 | 110 | 1.56e-39 | 130 |
MsG0180001571.01.T02 | AT2G38880 | 64.706 | 85 | 30 | 0 | 1 | 85 | 26 | 110 | 9.56e-39 | 130 |
MsG0180001571.01.T02 | AT2G38880 | 64.706 | 85 | 30 | 0 | 1 | 85 | 26 | 110 | 9.56e-39 | 130 |
MsG0180001571.01.T02 | AT2G38880 | 64.706 | 85 | 30 | 0 | 1 | 85 | 26 | 110 | 9.56e-39 | 130 |
MsG0180001571.01.T02 | AT2G47810 | 64.045 | 89 | 32 | 0 | 1 | 89 | 56 | 144 | 3.37e-38 | 129 |
MsG0180001571.01.T02 | AT1G09030 | 55.056 | 89 | 40 | 0 | 1 | 89 | 8 | 96 | 9.30e-34 | 117 |
MsG0180001571.01.T02 | AT5G08190 | 32.653 | 98 | 65 | 1 | 1 | 97 | 16 | 113 | 1.87e-14 | 67.8 |
MsG0180001571.01.T02 | AT5G08190 | 30.303 | 99 | 67 | 1 | 1 | 97 | 16 | 114 | 2.88e-14 | 67.4 |
MsG0180001571.01.T02 | AT5G23090 | 29.762 | 84 | 59 | 0 | 1 | 84 | 16 | 99 | 5.04e-14 | 66.6 |
MsG0180001571.01.T02 | AT5G23090 | 29.762 | 84 | 59 | 0 | 1 | 84 | 16 | 99 | 5.59e-14 | 66.6 |
MsG0180001571.01.T02 | AT5G23090 | 29.762 | 84 | 59 | 0 | 1 | 84 | 16 | 99 | 5.59e-14 | 66.6 |
MsG0180001571.01.T02 | AT5G23090 | 29.762 | 84 | 59 | 0 | 1 | 84 | 16 | 99 | 5.59e-14 | 66.6 |
MsG0180001571.01.T02 | AT5G23090 | 30.986 | 71 | 49 | 0 | 14 | 84 | 16 | 86 | 8.32e-11 | 57.8 |
Find 28 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGAATGCTGCTGCATTAA+TGG | 0.212560 | 1:+23471935 | None:intergenic |
AATAGCAATGGTCATGGTTA+TGG | 0.302909 | 1:-23471869 | MsG0180001571.01.T01:CDS |
ATACGAATCACGTTTGCTAT+TGG | 0.343423 | 1:+23472247 | None:intergenic |
CGTTGAAGGTAAAATGTTAA+AGG | 0.361813 | 1:+23472028 | None:intergenic |
TTACAGCAGAAGATATACTA+TGG | 0.368505 | 1:-23472087 | MsG0180001571.01.T01:CDS |
TTATAATTATTATTAATTAG+AGG | 0.371549 | 1:+23471890 | None:intergenic |
AGAAAACAACAATCAAAGTT+TGG | 0.401488 | 1:+23471776 | None:intergenic |
CACTTTCACGGTAACGTTGA+AGG | 0.420587 | 1:+23472014 | None:intergenic |
GAAGATATACTATGGGCAAT+GGG | 0.428461 | 1:-23472079 | MsG0180001571.01.T01:CDS |
CAGGTTCACCTTCACTTTCA+CGG | 0.431684 | 1:+23472002 | None:intergenic |
TTCAGATACGCATTCTTGAA+TGG | 0.454185 | 1:+23472171 | None:intergenic |
TTATTATTAATTAGAGGAAG+TGG | 0.469233 | 1:+23471896 | None:intergenic |
CTATGGGCAATGGGGAAACT+AGG | 0.473445 | 1:-23472070 | MsG0180001571.01.T01:CDS |
CGTTTGCTATTGGCATGTAC+TGG | 0.489893 | 1:+23472257 | None:intergenic |
GAAGTGCGTCGAACAGAAGC+AGG | 0.501979 | 1:+23471983 | None:intergenic |
TGCTGCATTAATGGAAAAGA+TGG | 0.528976 | 1:+23471944 | None:intergenic |
AGAAGATATACTATGGGCAA+TGG | 0.533910 | 1:-23472080 | MsG0180001571.01.T01:CDS |
AGGTGATTTGAATCAATGGC+TGG | 0.544068 | 1:-23472295 | None:intergenic |
AATAATAATTATAATAGCAA+TGG | 0.551891 | 1:-23471881 | MsG0180001571.01.T01:CDS |
GGTACAAAACTAGAGGAAGA+AGG | 0.581984 | 1:+23471797 | None:intergenic |
AATTATAATAGCAATGGTCA+TGG | 0.589262 | 1:-23471875 | MsG0180001571.01.T01:CDS |
AAAGTTTGGTACAAAACTAG+AGG | 0.609583 | 1:+23471790 | None:intergenic |
TACAGCAGAAGATATACTAT+GGG | 0.616567 | 1:-23472086 | MsG0180001571.01.T01:CDS |
ATACATAAGCTTCATAACAT+CGG | 0.628968 | 1:-23472149 | MsG0180001571.01.T01:CDS |
CAACGTTACCGTGAAAGTGA+AGG | 0.630890 | 1:-23472010 | MsG0180001571.01.T01:CDS |
TTATGATTATCACGTTTGAG+AGG | 0.639900 | 1:+23471752 | None:intergenic |
TGCATTAATGGAAAAGATGG+AGG | 0.643868 | 1:+23471947 | None:intergenic |
AAGATATACTATGGGCAATG+GGG | 0.655865 | 1:-23472078 | MsG0180001571.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAATAATTATAATAGCAA+TGG | - | Chr1:23472138-23472157 | MsG0180001571.01.T01:CDS | 10.0% |
!! | TTATTATTAATTAGAGGAAG+TGG | + | Chr1:23472126-23472145 | None:intergenic | 20.0% |
! | AATTATAATAGCAATGGTCA+TGG | - | Chr1:23472144-23472163 | MsG0180001571.01.T01:CDS | 25.0% |
! | AGAAAACAACAATCAAAGTT+TGG | + | Chr1:23472246-23472265 | None:intergenic | 25.0% |
! | ATACATAAGCTTCATAACAT+CGG | - | Chr1:23471870-23471889 | MsG0180001571.01.T01:CDS | 25.0% |
!!! | ATGGTTTTGATTTTGATCAA+GGG | - | Chr1:23472169-23472188 | MsG0180001571.01.T01:CDS | 25.0% |
!!! | TATGGTTTTGATTTTGATCA+AGG | - | Chr1:23472168-23472187 | MsG0180001571.01.T01:CDS | 25.0% |
AAAGTTTGGTACAAAACTAG+AGG | + | Chr1:23472232-23472251 | None:intergenic | 30.0% | |
CGTTGAAGGTAAAATGTTAA+AGG | + | Chr1:23471994-23472013 | None:intergenic | 30.0% | |
TACAGCAGAAGATATACTAT+GGG | - | Chr1:23471933-23471952 | MsG0180001571.01.T01:CDS | 30.0% | |
TTACAGCAGAAGATATACTA+TGG | - | Chr1:23471932-23471951 | MsG0180001571.01.T01:CDS | 30.0% | |
TTATGATTATCACGTTTGAG+AGG | + | Chr1:23472270-23472289 | None:intergenic | 30.0% | |
!! | CTGTTTTTCTTTGTTCTCTT+TGG | + | Chr1:23471912-23471931 | None:intergenic | 30.0% |
AAGATATACTATGGGCAATG+GGG | - | Chr1:23471941-23471960 | MsG0180001571.01.T01:CDS | 35.0% | |
AATAGCAATGGTCATGGTTA+TGG | - | Chr1:23472150-23472169 | MsG0180001571.01.T01:CDS | 35.0% | |
AGAAGATATACTATGGGCAA+TGG | - | Chr1:23471939-23471958 | MsG0180001571.01.T01:CDS | 35.0% | |
GAAGATATACTATGGGCAAT+GGG | - | Chr1:23471940-23471959 | MsG0180001571.01.T01:CDS | 35.0% | |
TGCATTAATGGAAAAGATGG+AGG | + | Chr1:23472075-23472094 | None:intergenic | 35.0% | |
TGCTGCATTAATGGAAAAGA+TGG | + | Chr1:23472078-23472097 | None:intergenic | 35.0% | |
TTCAGATACGCATTCTTGAA+TGG | + | Chr1:23471851-23471870 | None:intergenic | 35.0% | |
! | AATGGTTTCTTTTGCATCGT+CGG | + | Chr1:23471833-23471852 | None:intergenic | 35.0% |
!! | ATACGAATCACGTTTGCTAT+TGG | + | Chr1:23471775-23471794 | None:intergenic | 35.0% |
!! | GATCAAGGGTTTTATAGAGA+TGG | - | Chr1:23472183-23472202 | MsG0180001571.01.T01:CDS | 35.0% |
GAAGAATGCTGCTGCATTAA+TGG | + | Chr1:23472087-23472106 | None:intergenic | 40.0% | |
GGTACAAAACTAGAGGAAGA+AGG | + | Chr1:23472225-23472244 | None:intergenic | 40.0% | |
!! | CAAGGGTTTTATAGAGATGG+TGG | - | Chr1:23472186-23472205 | MsG0180001571.01.T01:CDS | 40.0% |
CAACGTTACCGTGAAAGTGA+AGG | - | Chr1:23472009-23472028 | MsG0180001571.01.T01:CDS | 45.0% | |
CACTTTCACGGTAACGTTGA+AGG | + | Chr1:23472008-23472027 | None:intergenic | 45.0% | |
CAGGTTCACCTTCACTTTCA+CGG | + | Chr1:23472020-23472039 | None:intergenic | 45.0% | |
! | TCGGAGATTTTTGCATGCGA+CGG | + | Chr1:23471814-23471833 | None:intergenic | 45.0% |
!! | CGTTTGCTATTGGCATGTAC+TGG | + | Chr1:23471765-23471784 | None:intergenic | 45.0% |
!! | TTATAATTATTATTAATTAG+AGG | + | Chr1:23472132-23472151 | None:intergenic | 5.0% |
CTATGGGCAATGGGGAAACT+AGG | - | Chr1:23471949-23471968 | MsG0180001571.01.T01:CDS | 50.0% | |
GAAGTGCGTCGAACAGAAGC+AGG | + | Chr1:23472039-23472058 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 23471739 | 23472302 | 23471739 | ID=MsG0180001571.01;Name=MsG0180001571.01 |
Chr1 | mRNA | 23471739 | 23472302 | 23471739 | ID=MsG0180001571.01.T01;Parent=MsG0180001571.01;Name=MsG0180001571.01.T01;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|187 |
Chr1 | exon | 23471739 | 23472302 | 23471739 | ID=MsG0180001571.01.T01:exon:18146;Parent=MsG0180001571.01.T01 |
Chr1 | CDS | 23471739 | 23472302 | 23471739 | ID=MsG0180001571.01.T01:cds;Parent=MsG0180001571.01.T01 |
Chr1 | mRNA | 23471739 | 23472272 | 23471739 | ID=MsG0180001571.01.T02;Parent=MsG0180001571.01;Name=MsG0180001571.01.T02;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|177 |
Chr1 | exon | 23471739 | 23472272 | 23471739 | ID=MsG0180001571.01.T02:exon:18147;Parent=MsG0180001571.01.T02 |
Chr1 | CDS | 23471739 | 23472272 | 23471739 | ID=MsG0180001571.01.T02:cds;Parent=MsG0180001571.01.T02 |
Gene Sequence |
Protein sequence |