Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001834.01.T01 | RHN78664.1 | 97.115 | 416 | 9 | 2 | 9 | 422 | 1 | 415 | 0 | 816 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001834.01.T01 | A0A396JN85 | 97.115 | 416 | 9 | 2 | 9 | 422 | 1 | 415 | 0.0 | 816 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180001834.01.T01 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001834.01.T01 | MTR_1g044785 | 97.391 | 230 | 4 | 1 | 195 | 422 | 1 | 230 | 3.66e-165 | 463 |
| MsG0180001834.01.T01 | MTR_1g073350 | 63.972 | 433 | 118 | 13 | 9 | 422 | 1 | 414 | 2.96e-157 | 450 |
| MsG0180001834.01.T01 | MTR_2g068730 | 62.500 | 64 | 24 | 0 | 307 | 370 | 144 | 207 | 6.05e-22 | 95.1 |
| MsG0180001834.01.T01 | MTR_8g098725 | 45.946 | 111 | 54 | 2 | 312 | 416 | 215 | 325 | 1.86e-21 | 95.1 |
| MsG0180001834.01.T01 | MTR_8g098725 | 45.946 | 111 | 54 | 2 | 312 | 416 | 211 | 321 | 2.31e-21 | 94.7 |
| MsG0180001834.01.T01 | MTR_5g010120 | 51.064 | 94 | 38 | 2 | 299 | 384 | 142 | 235 | 2.52e-20 | 90.1 |
| MsG0180001834.01.T01 | MTR_4g061823 | 57.812 | 64 | 27 | 0 | 311 | 374 | 130 | 193 | 4.93e-19 | 86.3 |
| MsG0180001834.01.T01 | MTR_4g061910 | 57.812 | 64 | 27 | 0 | 311 | 374 | 130 | 193 | 4.93e-19 | 86.3 |
| MsG0180001834.01.T01 | MTR_2g096080 | 44.330 | 97 | 51 | 1 | 274 | 370 | 106 | 199 | 3.86e-18 | 84.0 |
| MsG0180001834.01.T01 | MTR_1g008220 | 64.583 | 48 | 17 | 0 | 324 | 371 | 230 | 277 | 6.43e-16 | 78.2 |
| MsG0180001834.01.T01 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 322 | 370 | 197 | 245 | 1.98e-15 | 76.3 |
| MsG0180001834.01.T01 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 322 | 370 | 190 | 238 | 2.10e-15 | 75.9 |
| MsG0180001834.01.T01 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 322 | 370 | 226 | 274 | 4.00e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001834.01.T01 | AT1G04500 | 47.294 | 425 | 156 | 14 | 17 | 422 | 2 | 377 | 1.04e-104 | 315 |
| MsG0180001834.01.T01 | AT1G04500 | 47.743 | 421 | 152 | 14 | 21 | 422 | 15 | 386 | 2.35e-104 | 315 |
| MsG0180001834.01.T01 | AT1G04500 | 47.743 | 421 | 152 | 14 | 21 | 422 | 15 | 386 | 2.35e-104 | 315 |
| MsG0180001834.01.T01 | AT2G33350 | 47.153 | 439 | 171 | 14 | 10 | 422 | 15 | 418 | 2.36e-98 | 300 |
| MsG0180001834.01.T01 | AT2G33350 | 47.430 | 428 | 164 | 14 | 21 | 422 | 17 | 409 | 5.81e-97 | 296 |
| MsG0180001834.01.T01 | AT2G33350 | 47.196 | 428 | 165 | 14 | 21 | 422 | 6 | 398 | 6.82e-97 | 296 |
| MsG0180001834.01.T01 | AT2G33350 | 46.853 | 429 | 166 | 14 | 21 | 422 | 17 | 410 | 3.44e-95 | 292 |
| MsG0180001834.01.T01 | AT1G04500 | 42.442 | 344 | 132 | 13 | 21 | 347 | 15 | 309 | 2.64e-62 | 206 |
| MsG0180001834.01.T01 | AT2G33350 | 42.571 | 350 | 143 | 13 | 21 | 347 | 17 | 331 | 2.60e-58 | 194 |
| MsG0180001834.01.T01 | AT1G63820 | 47.244 | 127 | 56 | 3 | 269 | 388 | 134 | 256 | 1.31e-27 | 111 |
| MsG0180001834.01.T01 | AT5G41380 | 62.667 | 75 | 23 | 1 | 312 | 386 | 201 | 270 | 8.85e-24 | 101 |
| MsG0180001834.01.T01 | AT3G12890 | 55.172 | 87 | 35 | 1 | 317 | 403 | 130 | 212 | 6.41e-23 | 97.4 |
| MsG0180001834.01.T01 | AT4G27900 | 39.806 | 103 | 36 | 2 | 274 | 371 | 178 | 259 | 6.49e-16 | 77.8 |
| MsG0180001834.01.T01 | AT4G27900 | 39.806 | 103 | 36 | 2 | 274 | 371 | 178 | 259 | 6.49e-16 | 77.8 |
| MsG0180001834.01.T01 | AT5G53420 | 65.957 | 47 | 16 | 0 | 324 | 370 | 137 | 183 | 1.79e-15 | 74.7 |
| MsG0180001834.01.T01 | AT5G53420 | 65.957 | 47 | 16 | 0 | 324 | 370 | 137 | 183 | 1.79e-15 | 74.7 |
| MsG0180001834.01.T01 | AT5G53420 | 65.957 | 47 | 16 | 0 | 324 | 370 | 137 | 183 | 1.79e-15 | 74.7 |
| MsG0180001834.01.T01 | AT5G53420 | 65.957 | 47 | 16 | 0 | 324 | 370 | 216 | 262 | 3.53e-15 | 75.5 |
| MsG0180001834.01.T01 | AT5G59990 | 42.373 | 118 | 49 | 2 | 301 | 416 | 138 | 238 | 1.46e-14 | 73.6 |
Find 74 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTGAGATATGTTGTTTA+AGG | 0.115598 | 1:-27927018 | None:intergenic |
| GGAAAGGTTGTTATTATTAT+TGG | 0.150644 | 1:-27927162 | None:intergenic |
| ACACAACCTCATCATCTTTC+TGG | 0.167128 | 1:+27927320 | MsG0180001834.01.T01:CDS |
| GCTGATAGTTCTAGCTTATT+TGG | 0.217917 | 1:+27927527 | MsG0180001834.01.T01:CDS |
| ACATAAGGAAGGTGAATAAT+TGG | 0.233846 | 1:+27929175 | MsG0180001834.01.T01:three_prime_UTR |
| CTTATTCATATATAATATTA+TGG | 0.244032 | 1:-27929201 | None:intergenic |
| TTGGATTATCAAGGTGAAAA+TGG | 0.259352 | 1:+27927590 | MsG0180001834.01.T01:CDS |
| TCCTCCAAGTGTGAAATTTC+TGG | 0.285986 | 1:-27928387 | None:intergenic |
| TTACTTCATCATCATCTTCA+TGG | 0.288489 | 1:-27928711 | None:intergenic |
| TTTGCAAAGAATGATGATTT+TGG | 0.299907 | 1:+27928661 | MsG0180001834.01.T01:CDS |
| TTTGGTGGAGGGATTCTATT+AGG | 0.306595 | 1:+27927545 | MsG0180001834.01.T01:CDS |
| TGAAATGCAGACACAAGATT+TGG | 0.326244 | 1:+27927571 | MsG0180001834.01.T01:CDS |
| TTCTTGTGAATCAAAGATAA+TGG | 0.355504 | 1:-27927183 | None:intergenic |
| CATAAGGAAGGTGAATAATT+GGG | 0.362220 | 1:+27929176 | MsG0180001834.01.T01:three_prime_UTR |
| CATCATCTTTCTGGTTTGAA+AGG | 0.369735 | 1:+27927329 | MsG0180001834.01.T01:CDS |
| TATATATGAATAAGTGAGTT+AGG | 0.374262 | 1:+27929210 | MsG0180001834.01.T01:three_prime_UTR |
| TTGTACAGATTCTGTTCAAC+AGG | 0.388571 | 1:+27927622 | MsG0180001834.01.T01:CDS |
| GAGGACTCTTCTTTGAAAGT+TGG | 0.400610 | 1:+27928405 | MsG0180001834.01.T01:CDS |
| GATAGCCGACCGCGAGTTAG+AGG | 0.402796 | 1:+27928634 | MsG0180001834.01.T01:CDS |
| GAGAATCACAAACTAGTATC+TGG | 0.409472 | 1:+27928336 | MsG0180001834.01.T01:CDS |
| TCTTGTTCTTATCTTAGTAA+TGG | 0.420390 | 1:+27927464 | MsG0180001834.01.T01:CDS |
| TGTTAAAGAAGAAGATGATA+TGG | 0.428400 | 1:+27928953 | MsG0180001834.01.T01:CDS |
| TTGTTAACATTGTTTGTGGT+AGG | 0.435899 | 1:-27927122 | None:intergenic |
| TGTTCTTGATGAGTTGTTAT+CGG | 0.437627 | 1:-27927278 | None:intergenic |
| TCTTATCTTAGTAATGGCTT+AGG | 0.445374 | 1:+27927470 | MsG0180001834.01.T01:CDS |
| ATAGGATCAGTTTGATATTG+TGG | 0.454553 | 1:-27927356 | None:intergenic |
| GATAGTTCTAGCTTATTTGG+TGG | 0.459834 | 1:+27927530 | MsG0180001834.01.T01:CDS |
| TGGAAGTTGTTCTGCCACTT+TGG | 0.463869 | 1:+27928362 | MsG0180001834.01.T01:CDS |
| TAGGACCCTTTACCATCTAC+AGG | 0.465264 | 1:+27929144 | MsG0180001834.01.T01:three_prime_UTR |
| ATGTCATCAAGTCCTGTAGA+TGG | 0.468329 | 1:-27929156 | None:intergenic |
| TCAAACTGATCCTATATCTT+CGG | 0.472302 | 1:+27927364 | MsG0180001834.01.T01:CDS |
| GGTGTGTATCATGGAAATCT+TGG | 0.472409 | 1:+27927491 | MsG0180001834.01.T01:CDS |
| CAAGTCCTGTAGATGGTAAA+GGG | 0.475333 | 1:-27929149 | None:intergenic |
| CTACAGGACTTGATGACATA+AGG | 0.475904 | 1:+27929160 | MsG0180001834.01.T01:three_prime_UTR |
| ATCATCTTTCTGGTTTGAAA+GGG | 0.478809 | 1:+27927330 | MsG0180001834.01.T01:CDS |
| GGCACCAGAAATTTCACACT+TGG | 0.479570 | 1:+27928383 | MsG0180001834.01.T01:CDS |
| TCTTCATGGTTGCTACTACC+TGG | 0.484305 | 1:-27928697 | None:intergenic |
| AGTTCTAGCTTATTTGGTGG+AGG | 0.485926 | 1:+27927533 | MsG0180001834.01.T01:CDS |
| ACCAGAAATTTCACACTTGG+AGG | 0.486593 | 1:+27928386 | MsG0180001834.01.T01:CDS |
| AGCGGTGCTGCCGAAGATAT+AGG | 0.487136 | 1:-27927374 | None:intergenic |
| ACACAAGATTTGGATTATCA+AGG | 0.487381 | 1:+27927581 | MsG0180001834.01.T01:CDS |
| TCAAGTCCTGTAGATGGTAA+AGG | 0.500232 | 1:-27929150 | None:intergenic |
| ATCATACCTGAAAATCTTGA+GGG | 0.501022 | 1:-27927652 | None:intergenic |
| GATGGAATAGTTGCATTTGA+AGG | 0.501927 | 1:-27929018 | None:intergenic |
| GAACAAGAAGGAGAATAAGA+AGG | 0.504833 | 1:-27927449 | None:intergenic |
| GATGTTGTTAACATTGTTTG+TGG | 0.505534 | 1:-27927126 | None:intergenic |
| CACAAACTAGTATCTGGTGC+TGG | 0.507442 | 1:+27928342 | MsG0180001834.01.T01:CDS |
| GAAAACTTTCTGTTGAGCAA+AGG | 0.518365 | 1:+27928427 | MsG0180001834.01.T01:CDS |
| TGTTAACATTGTTTGTGGTA+GGG | 0.519810 | 1:-27927121 | None:intergenic |
| GATTATCAAGGTGAAAATGG+TGG | 0.531561 | 1:+27927593 | MsG0180001834.01.T01:CDS |
| GATCATACCTGAAAATCTTG+AGG | 0.542555 | 1:-27927653 | None:intergenic |
| GTTCTAGCTTATTTGGTGGA+GGG | 0.546863 | 1:+27927534 | MsG0180001834.01.T01:CDS |
| AATGGCTTAGGTGTGTATCA+TGG | 0.554708 | 1:+27927482 | MsG0180001834.01.T01:CDS |
| TTTGGTGAGAATCATAGGCC+AGG | 0.557188 | 1:+27928679 | MsG0180001834.01.T01:CDS |
| AATTCAAATCAATGAGTGGA+TGG | 0.563218 | 1:-27929036 | None:intergenic |
| CAATCATCTTCAAATACAGA+AGG | 0.568846 | 1:-27927413 | None:intergenic |
| AAATTTCAGCAAGAAAATCA+AGG | 0.584947 | 1:+27928491 | MsG0180001834.01.T01:CDS |
| GATATCTTTGCACATATCAG+TGG | 0.587582 | 1:+27928987 | MsG0180001834.01.T01:CDS |
| GCCGACCGCGAGTTAGAGGA+AGG | 0.600682 | 1:+27928638 | MsG0180001834.01.T01:CDS |
| TTCAAACCAGAAAGATGATG+AGG | 0.600906 | 1:-27927326 | None:intergenic |
| ATAAGGAAGGTGAATAATTG+GGG | 0.603938 | 1:+27929177 | MsG0180001834.01.T01:three_prime_UTR |
| AATTAATTCAAATCAATGAG+TGG | 0.607127 | 1:-27929040 | None:intergenic |
| TTACTAAGATAAGAACAAGA+AGG | 0.626377 | 1:-27927461 | None:intergenic |
| GTGAATCAAAGATAATGGAA+AGG | 0.627025 | 1:-27927178 | None:intergenic |
| TGAGTTGTTATCGGAAGAAG+CGG | 0.627559 | 1:-27927269 | None:intergenic |
| TGAAATTTCTGGTGCCAAAG+TGG | 0.631400 | 1:-27928376 | None:intergenic |
| GCAAACCTTCCTCTAACTCG+CGG | 0.633175 | 1:-27928643 | None:intergenic |
| AATCATCTTCAAATACAGAA+GGG | 0.635264 | 1:-27927412 | None:intergenic |
| GGGAGTGAAGCACTCATAAG+CGG | 0.643710 | 1:-27927392 | None:intergenic |
| AGGACTTGATGACATAAGGA+AGG | 0.653372 | 1:+27929164 | MsG0180001834.01.T01:three_prime_UTR |
| ACCTTCCTCTAACTCGCGGT+CGG | 0.662592 | 1:-27928639 | None:intergenic |
| GTTGTTATCGGAAGAAGCGG+CGG | 0.673069 | 1:-27927266 | None:intergenic |
| GATATGTGCAAAGATATCTG+AGG | 0.713563 | 1:-27928982 | None:intergenic |
| TAAGTGAGTTAGGAACACAC+AGG | 0.785826 | 1:+27929220 | MsG0180001834.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTATTCATATATAATATTA+TGG | - | Chr1:27929204-27929223 | None:intergenic | 10.0% |
| !!! | ATAATTGTATTTTCTTTTAT+AGG | + | Chr1:27928302-27928321 | MsG0180001834.01.T01:intron | 10.0% |
| !!! | ATTAAAAAATACTTTTGATT+TGG | + | Chr1:27927941-27927960 | MsG0180001834.01.T01:intron | 10.0% |
| !! | TCTTATTATAGAAGATATTA+TGG | + | Chr1:27927719-27927738 | MsG0180001834.01.T01:intron | 15.0% |
| !!! | ATCGTTTTGTTAAATAAATT+TGG | - | Chr1:27928747-27928766 | None:intergenic | 15.0% |
| !!! | TTTTTATTATCAACTTAAAG+TGG | - | Chr1:27927985-27928004 | None:intergenic | 15.0% |
| !! | AAATCAAGGAAAATTTAACA+AGG | - | Chr1:27927700-27927719 | None:intergenic | 20.0% |
| !! | AATTAATTCAAATCAATGAG+TGG | - | Chr1:27929043-27929062 | None:intergenic | 20.0% |
| !! | AATTGTTAAAAGATTAGAAG+AGG | + | Chr1:27927819-27927838 | MsG0180001834.01.T01:intron | 20.0% |
| !! | ATACCATCAAATAATTGAAA+AGG | - | Chr1:27928888-27928907 | None:intergenic | 20.0% |
| !! | TATATATGAATAAGTGAGTT+AGG | + | Chr1:27929210-27929229 | MsG0180001834.01.T01:three_prime_UTR | 20.0% |
| !! | TCTTCTATAATAAGAAATCA+AGG | - | Chr1:27927714-27927733 | None:intergenic | 20.0% |
| !! | TTGTTAAATAAATTTGGCTA+GGG | - | Chr1:27928741-27928760 | None:intergenic | 20.0% |
| !! | TTTACCACATGAAAAAAATT+CGG | + | Chr1:27929310-27929329 | MsG0180001834.01.T01:three_prime_UTR | 20.0% |
| !! | TTTGTTAAATAAATTTGGCT+AGG | - | Chr1:27928742-27928761 | None:intergenic | 20.0% |
| !!! | TCAATTTTTACTTTGTATGT+AGG | - | Chr1:27927771-27927790 | None:intergenic | 20.0% |
| !!! | TTTCCTTTTCAATTATTTGA+TGG | + | Chr1:27928882-27928901 | MsG0180001834.01.T01:intron | 20.0% |
| ! | AAATTTCAGCAAGAAAATCA+AGG | + | Chr1:27928491-27928510 | MsG0180001834.01.T01:CDS | 25.0% |
| ! | AATCATCTTCAAATACAGAA+GGG | - | Chr1:27927415-27927434 | None:intergenic | 25.0% |
| ! | TCAAAAATTTGTGCACTAAT+TGG | - | Chr1:27926894-27926913 | None:intergenic | 25.0% |
| ! | TCTTGTTCTTATCTTAGTAA+TGG | + | Chr1:27927464-27927483 | MsG0180001834.01.T01:CDS | 25.0% |
| ! | TGTTAAAGAAGAAGATGATA+TGG | + | Chr1:27928953-27928972 | MsG0180001834.01.T01:CDS | 25.0% |
| ! | TTACTAAGATAAGAACAAGA+AGG | - | Chr1:27927464-27927483 | None:intergenic | 25.0% |
| ! | TTCTTGTGAATCAAAGATAA+TGG | - | Chr1:27927186-27927205 | None:intergenic | 25.0% |
| !! | ATTTTTACTTTGTATGTAGG+TGG | - | Chr1:27927768-27927787 | None:intergenic | 25.0% |
| !! | GGAAAGGTTGTTATTATTAT+TGG | - | Chr1:27927165-27927184 | None:intergenic | 25.0% |
| !! | TATTTTCTTTTATAGGCTCT+TGG | + | Chr1:27928309-27928328 | MsG0180001834.01.T01:intron | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | + | Chr1:27928661-27928680 | MsG0180001834.01.T01:CDS | 25.0% |
| !!! | TAGCTTGTGTATATTTTTGT+AGG | + | Chr1:27929125-27929144 | MsG0180001834.01.T01:three_prime_UTR | 25.0% |
| AAAAAAGACTGAAAGTGATG+TGG | - | Chr1:27928861-27928880 | None:intergenic | 30.0% | |
| AAGTTGAACATTTCGAAGTA+GGG | - | Chr1:27928816-27928835 | None:intergenic | 30.0% | |
| AATTCAAATCAATGAGTGGA+TGG | - | Chr1:27929039-27929058 | None:intergenic | 30.0% | |
| ACACAAGATTTGGATTATCA+AGG | + | Chr1:27927581-27927600 | MsG0180001834.01.T01:CDS | 30.0% | |
| ACATAAGGAAGGTGAATAAT+TGG | + | Chr1:27929175-27929194 | MsG0180001834.01.T01:three_prime_UTR | 30.0% | |
| AGAGAGTCTTGGAAAAAATT+AGG | - | Chr1:27926927-27926946 | None:intergenic | 30.0% | |
| ATAAGGAAGGTGAATAATTG+GGG | + | Chr1:27929177-27929196 | MsG0180001834.01.T01:three_prime_UTR | 30.0% | |
| ATAGGATCAGTTTGATATTG+TGG | - | Chr1:27927359-27927378 | None:intergenic | 30.0% | |
| ATCATACCTGAAAATCTTGA+GGG | - | Chr1:27927655-27927674 | None:intergenic | 30.0% | |
| ATCTGCAAGTACAAAATGAA+AGG | - | Chr1:27928930-27928949 | None:intergenic | 30.0% | |
| ATGTCTAACATCAACATATG+TGG | - | Chr1:27928213-27928232 | None:intergenic | 30.0% | |
| CAATCATCTTCAAATACAGA+AGG | - | Chr1:27927416-27927435 | None:intergenic | 30.0% | |
| CATAAGGAAGGTGAATAATT+GGG | + | Chr1:27929176-27929195 | MsG0180001834.01.T01:three_prime_UTR | 30.0% | |
| CATTGAACCAATCATAAAGA+TGG | - | Chr1:27928046-27928065 | None:intergenic | 30.0% | |
| GAAAAGACCATCTTTATGAT+TGG | + | Chr1:27928036-27928055 | MsG0180001834.01.T01:intron | 30.0% | |
| GAGAGTCTTGGAAAAAATTA+GGG | - | Chr1:27926926-27926945 | None:intergenic | 30.0% | |
| GATGTTGTTAACATTGTTTG+TGG | - | Chr1:27927129-27927148 | None:intergenic | 30.0% | |
| TCAAACTGATCCTATATCTT+CGG | + | Chr1:27927364-27927383 | MsG0180001834.01.T01:CDS | 30.0% | |
| TCTTATCTTAGTAATGGCTT+AGG | + | Chr1:27927470-27927489 | MsG0180001834.01.T01:CDS | 30.0% | |
| TGTTAACATTGTTTGTGGTA+GGG | - | Chr1:27927124-27927143 | None:intergenic | 30.0% | |
| TGTTAGACATTGATACATGT+TGG | + | Chr1:27928223-27928242 | MsG0180001834.01.T01:intron | 30.0% | |
| TGTTCTTGATGAGTTGTTAT+CGG | - | Chr1:27927281-27927300 | None:intergenic | 30.0% | |
| TTACTTCATCATCATCTTCA+TGG | - | Chr1:27928714-27928733 | None:intergenic | 30.0% | |
| TTGGATTATCAAGGTGAAAA+TGG | + | Chr1:27927590-27927609 | MsG0180001834.01.T01:CDS | 30.0% | |
| TTGTTAACATTGTTTGTGGT+AGG | - | Chr1:27927125-27927144 | None:intergenic | 30.0% | |
| ! | AGCTTGAGATATGTTGTTTA+AGG | - | Chr1:27927021-27927040 | None:intergenic | 30.0% |
| ! | TAAGTTGAACATTTCGAAGT+AGG | - | Chr1:27928817-27928836 | None:intergenic | 30.0% |
| ! | TCATTTTACAATTGTTCTCG+AGG | + | Chr1:27928775-27928794 | MsG0180001834.01.T01:intron | 30.0% |
| ! | TTTTAACCCTCAAGATTTTC+AGG | + | Chr1:27927646-27927665 | MsG0180001834.01.T01:CDS | 30.0% |
| !! | AATTTTGTTGTAGAGAGTCT+TGG | - | Chr1:27926938-27926957 | None:intergenic | 30.0% |
| !! | ATCATCTTTCTGGTTTGAAA+GGG | + | Chr1:27927330-27927349 | MsG0180001834.01.T01:CDS | 30.0% |
| !! | ATGATTTTGGTGAGAATCAT+AGG | + | Chr1:27928674-27928693 | MsG0180001834.01.T01:CDS | 30.0% |
| !! | CTATATCAGAAGTGTACTTT+TGG | + | Chr1:27927842-27927861 | MsG0180001834.01.T01:intron | 30.0% |
| !! | GTGAATCAAAGATAATGGAA+AGG | - | Chr1:27927181-27927200 | None:intergenic | 30.0% |
| AGTGGTTATTCCTTTCTACT+AGG | - | Chr1:27927967-27927986 | None:intergenic | 35.0% | |
| GAAAACTTTCTGTTGAGCAA+AGG | + | Chr1:27928427-27928446 | MsG0180001834.01.T01:CDS | 35.0% | |
| GAACAAGAAGGAGAATAAGA+AGG | - | Chr1:27927452-27927471 | None:intergenic | 35.0% | |
| GAGAATCACAAACTAGTATC+TGG | + | Chr1:27928336-27928355 | MsG0180001834.01.T01:CDS | 35.0% | |
| GATATCTTTGCACATATCAG+TGG | + | Chr1:27928987-27929006 | MsG0180001834.01.T01:CDS | 35.0% | |
| GATATGTGCAAAGATATCTG+AGG | - | Chr1:27928985-27929004 | None:intergenic | 35.0% | |
| GATCATACCTGAAAATCTTG+AGG | - | Chr1:27927656-27927675 | None:intergenic | 35.0% | |
| GATGGAATAGTTGCATTTGA+AGG | - | Chr1:27929021-27929040 | None:intergenic | 35.0% | |
| GATTATCAAGGTGAAAATGG+TGG | + | Chr1:27927593-27927612 | MsG0180001834.01.T01:CDS | 35.0% | |
| TGAAATGCAGACACAAGATT+TGG | + | Chr1:27927571-27927590 | MsG0180001834.01.T01:CDS | 35.0% | |
| TGCTTGTCGAAAAACTTTAG+CGG | + | Chr1:27928612-27928631 | MsG0180001834.01.T01:CDS | 35.0% | |
| TTCAAACCAGAAAGATGATG+AGG | - | Chr1:27927329-27927348 | None:intergenic | 35.0% | |
| TTGTACAGATTCTGTTCAAC+AGG | + | Chr1:27927622-27927641 | MsG0180001834.01.T01:CDS | 35.0% | |
| !! | ACGTCATCGATTTGAAGTAT+CGG | + | Chr1:27928255-27928274 | MsG0180001834.01.T01:intron | 35.0% |
| !! | CATCATCTTTCTGGTTTGAA+AGG | + | Chr1:27927329-27927348 | MsG0180001834.01.T01:CDS | 35.0% |
| !! | GATAGTTCTAGCTTATTTGG+TGG | + | Chr1:27927530-27927549 | MsG0180001834.01.T01:CDS | 35.0% |
| !! | GCTGATAGTTCTAGCTTATT+TGG | + | Chr1:27927527-27927546 | MsG0180001834.01.T01:CDS | 35.0% |
| !! | GTACTTTTGGTTAAAGCTCA+TGG | + | Chr1:27927855-27927874 | MsG0180001834.01.T01:intron | 35.0% |
| !! | TTTGATTTGGCCTAGTAGAA+AGG | + | Chr1:27927954-27927973 | MsG0180001834.01.T01:intron | 35.0% |
| !!! | GCAACCGAATTTTTTTCATG+TGG | - | Chr1:27929317-27929336 | None:intergenic | 35.0% |
| AATGGCTTAGGTGTGTATCA+TGG | + | Chr1:27927482-27927501 | MsG0180001834.01.T01:CDS | 40.0% | |
| ACACAACCTCATCATCTTTC+TGG | + | Chr1:27927320-27927339 | MsG0180001834.01.T01:CDS | 40.0% | |
| ACCAGAAATTTCACACTTGG+AGG | + | Chr1:27928386-27928405 | MsG0180001834.01.T01:CDS | 40.0% | |
| ATGTCATCAAGTCCTGTAGA+TGG | - | Chr1:27929159-27929178 | None:intergenic | 40.0% | |
| CAAGTCCTGTAGATGGTAAA+GGG | - | Chr1:27929152-27929171 | None:intergenic | 40.0% | |
| GGTGTGTATCATGGAAATCT+TGG | + | Chr1:27927491-27927510 | MsG0180001834.01.T01:CDS | 40.0% | |
| TAAGTGAGTTAGGAACACAC+AGG | + | Chr1:27929220-27929239 | MsG0180001834.01.T01:three_prime_UTR | 40.0% | |
| TCAAGTCCTGTAGATGGTAA+AGG | - | Chr1:27929153-27929172 | None:intergenic | 40.0% | |
| TCCTCCAAGTGTGAAATTTC+TGG | - | Chr1:27928390-27928409 | None:intergenic | 40.0% | |
| TGAGTTGTTATCGGAAGAAG+CGG | - | Chr1:27927272-27927291 | None:intergenic | 40.0% | |
| TTTGGTGGAGGGATTCTATT+AGG | + | Chr1:27927545-27927564 | MsG0180001834.01.T01:CDS | 40.0% | |
| ! | AGGACTTGATGACATAAGGA+AGG | + | Chr1:27929164-27929183 | MsG0180001834.01.T01:three_prime_UTR | 40.0% |
| ! | CTACAGGACTTGATGACATA+AGG | + | Chr1:27929160-27929179 | MsG0180001834.01.T01:three_prime_UTR | 40.0% |
| ! | GAGGACTCTTCTTTGAAAGT+TGG | + | Chr1:27928405-27928424 | MsG0180001834.01.T01:CDS | 40.0% |
| ! | GTTTTTATGTCACACACTGC+AGG | + | Chr1:27926854-27926873 | MsG0180001834.01.T01:CDS | 40.0% |
| !! | AGTTCTAGCTTATTTGGTGG+AGG | + | Chr1:27927533-27927552 | MsG0180001834.01.T01:CDS | 40.0% |
| !! | GTTCTAGCTTATTTGGTGGA+GGG | + | Chr1:27927534-27927553 | MsG0180001834.01.T01:CDS | 40.0% |
| !! | TGAAATTTCTGGTGCCAAAG+TGG | - | Chr1:27928379-27928398 | None:intergenic | 40.0% |
| CACAAACTAGTATCTGGTGC+TGG | + | Chr1:27928342-27928361 | MsG0180001834.01.T01:CDS | 45.0% | |
| GGCACCAGAAATTTCACACT+TGG | + | Chr1:27928383-27928402 | MsG0180001834.01.T01:CDS | 45.0% | |
| TAGGACCCTTTACCATCTAC+AGG | + | Chr1:27929144-27929163 | MsG0180001834.01.T01:three_prime_UTR | 45.0% | |
| TCTTCATGGTTGCTACTACC+TGG | - | Chr1:27928700-27928719 | None:intergenic | 45.0% | |
| TTTGGTGAGAATCATAGGCC+AGG | + | Chr1:27928679-27928698 | MsG0180001834.01.T01:CDS | 45.0% | |
| ! | TGGAAGTTGTTCTGCCACTT+TGG | + | Chr1:27928362-27928381 | MsG0180001834.01.T01:CDS | 45.0% |
| GCAAACCTTCCTCTAACTCG+CGG | - | Chr1:27928646-27928665 | None:intergenic | 50.0% | |
| GTTGTTATCGGAAGAAGCGG+CGG | - | Chr1:27927269-27927288 | None:intergenic | 50.0% | |
| ! | GGGAGTGAAGCACTCATAAG+CGG | - | Chr1:27927395-27927414 | None:intergenic | 50.0% |
| ACCTTCCTCTAACTCGCGGT+CGG | - | Chr1:27928642-27928661 | None:intergenic | 55.0% | |
| !! | AGCGGTGCTGCCGAAGATAT+AGG | - | Chr1:27927377-27927396 | None:intergenic | 55.0% |
| GATAGCCGACCGCGAGTTAG+AGG | + | Chr1:27928634-27928653 | MsG0180001834.01.T01:CDS | 60.0% | |
| GCCGACCGCGAGTTAGAGGA+AGG | + | Chr1:27928638-27928657 | MsG0180001834.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 27926815 | 27929338 | 27926815 | ID=MsG0180001834.01;Name=MsG0180001834.01 |
| Chr1 | mRNA | 27926815 | 27929338 | 27926815 | ID=MsG0180001834.01.T01;Parent=MsG0180001834.01;Name=MsG0180001834.01.T01;_AED=0.34;_eAED=0.34;_QI=1|1|1|1|1|1|4|283|422 |
| Chr1 | exon | 27926815 | 27927667 | 27926815 | ID=MsG0180001834.01.T01:exon:41599;Parent=MsG0180001834.01.T01 |
| Chr1 | exon | 27928324 | 27928512 | 27928324 | ID=MsG0180001834.01.T01:exon:41600;Parent=MsG0180001834.01.T01 |
| Chr1 | exon | 27928610 | 27928729 | 27928610 | ID=MsG0180001834.01.T01:exon:41601;Parent=MsG0180001834.01.T01 |
| Chr1 | exon | 27928948 | 27929338 | 27928948 | ID=MsG0180001834.01.T01:exon:41602;Parent=MsG0180001834.01.T01 |
| Chr1 | five_prime_UTR | 27926815 | 27926815 | 27926815 | ID=MsG0180001834.01.T01:five_prime_utr;Parent=MsG0180001834.01.T01 |
| Chr1 | CDS | 27926816 | 27927667 | 27926816 | ID=MsG0180001834.01.T01:cds;Parent=MsG0180001834.01.T01 |
| Chr1 | CDS | 27928324 | 27928512 | 27928324 | ID=MsG0180001834.01.T01:cds;Parent=MsG0180001834.01.T01 |
| Chr1 | CDS | 27928610 | 27928729 | 27928610 | ID=MsG0180001834.01.T01:cds;Parent=MsG0180001834.01.T01 |
| Chr1 | CDS | 27928948 | 27929055 | 27928948 | ID=MsG0180001834.01.T01:cds;Parent=MsG0180001834.01.T01 |
| Chr1 | three_prime_UTR | 27929056 | 27929338 | 27929056 | ID=MsG0180001834.01.T01:three_prime_utr;Parent=MsG0180001834.01.T01 |
| Gene Sequence |
| Protein sequence |
