AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001974.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001974.01.T01 MTR_8g107490 73.043 230 47 2 16 244 1 216 2.92e-116 335
MsG0180001974.01.T01 MTR_4g119600 82.353 187 33 0 58 244 65 251 8.96e-115 332
MsG0180001974.01.T01 MTR_6g075990 73.016 189 47 1 33 221 62 246 3.84e-96 282
MsG0180001974.01.T01 MTR_2g096070 62.705 244 41 3 1 244 32 225 3.68e-87 275
MsG0180001974.01.T01 MTR_8g103800 64.356 202 45 3 43 244 47 221 3.18e-83 250
MsG0180001974.01.T01 MTR_8g020433 61.161 224 36 3 21 244 27 199 9.34e-81 249
MsG0180001974.01.T01 MTR_5g031650 72.222 162 41 1 33 194 66 223 4.15e-79 238
MsG0180001974.01.T01 MTR_4g057975 72.050 161 40 3 43 202 47 203 3.47e-76 229
MsG0180001974.01.T01 MTR_3g067290 81.295 139 26 0 74 212 83 221 1.61e-70 216
MsG0180001974.01.T01 MTR_8g095070 57.426 202 51 4 43 244 53 219 4.25e-69 213
MsG0180001974.01.T01 MTR_1g098990 64.458 166 28 1 58 223 65 199 1.17e-66 208
MsG0180001974.01.T01 MTR_1g052890 84.348 115 18 0 130 244 1 115 6.58e-65 204
MsG0180001974.01.T01 MTR_0116s0050 60.000 175 35 2 43 217 32 171 1.94e-64 198
MsG0180001974.01.T01 MTR_5g046245 78.632 117 25 0 128 244 5 121 3.45e-61 192
MsG0180001974.01.T01 MTR_5g046245 71.875 64 18 0 126 189 147 210 4.21e-24 96.7
MsG0180001974.01.T01 MTR_8g009330 66.897 145 42 4 33 177 67 205 4.96e-60 189
MsG0180001974.01.T01 MTR_3g015530 56.000 175 62 2 58 231 54 214 1.07e-58 186
MsG0180001974.01.T01 MTR_4g057300 60.811 148 58 0 97 244 1 148 3.77e-56 183
MsG0180001974.01.T01 MTR_3g077875 46.354 192 101 1 43 232 68 259 8.25e-51 167
MsG0180001974.01.T01 MTR_3g072200 57.237 152 64 1 67 217 59 210 5.84e-50 172
MsG0180001974.01.T01 MTR_3g462670 53.797 158 73 0 78 235 41 198 1.75e-49 162
MsG0180001974.01.T01 MTR_5g006100 49.451 182 90 1 64 243 65 246 7.01e-49 171
MsG0180001974.01.T01 MTR_5g018790 83.333 90 15 0 155 244 1 90 4.74e-45 160
MsG0180001974.01.T01 MTR_5g046160 45.198 177 82 1 67 243 54 215 4.98e-43 147
MsG0180001974.01.T01 MTR_3g467720 63.248 117 37 2 102 212 23 139 1.14e-41 139
MsG0180001974.01.T01 MTR_0156s0040 51.351 148 70 1 97 242 1 148 1.53e-41 140
MsG0180001974.01.T01 MTR_7g050385 58.974 117 47 1 52 167 113 229 1.22e-39 137
MsG0180001974.01.T01 MTR_2g026585 44.000 175 69 2 58 232 68 213 1.02e-38 139
MsG0180001974.01.T01 MTR_6g089230 50.350 143 53 1 102 244 28 152 1.96e-38 134
MsG0180001974.01.T01 MTR_3g087440 50.000 142 69 1 58 197 83 224 2.44e-38 134
MsG0180001974.01.T01 MTR_4g051638 57.143 112 47 1 58 168 128 239 3.60e-38 134
MsG0180001974.01.T01 MTR_2g067930 46.809 188 96 2 37 220 9 196 4.36e-37 129
MsG0180001974.01.T01 MTR_3g030230 60.194 103 41 0 95 197 69 171 7.29e-36 125
MsG0180001974.01.T01 MTR_3g034840 36.413 184 115 1 13 194 28 211 7.32e-36 127
MsG0180001974.01.T01 MTR_0599s0020 36.413 184 115 1 13 194 28 211 7.32e-36 127
MsG0180001974.01.T01 MTR_4g120790 38.378 185 84 1 58 242 69 223 9.07e-36 127
MsG0180001974.01.T01 MTR_1g058140 51.938 129 62 0 101 229 78 206 1.74e-35 126
MsG0180001974.01.T01 MTR_1g081740 45.395 152 54 2 58 209 67 189 7.94e-34 120
MsG0180001974.01.T01 MTR_7g060350 58.654 104 43 0 88 191 73 176 9.08e-33 118
MsG0180001974.01.T01 MTR_1g059880 60.674 89 34 1 66 153 84 172 3.48e-32 117
MsG0180001974.01.T01 MTR_8g463940 70.667 75 21 1 58 131 94 168 4.30e-32 116
MsG0180001974.01.T01 MTR_3g434990 68.293 82 23 2 43 124 68 146 9.61e-32 114
MsG0180001974.01.T01 MTR_8g038805 65.000 80 28 0 97 176 52 131 1.88e-31 113
MsG0180001974.01.T01 MTR_7g050365 49.231 130 42 1 103 232 20 125 2.29e-31 115
MsG0180001974.01.T01 MTR_5g060540 45.513 156 59 3 52 206 41 171 5.08e-31 118
MsG0180001974.01.T01 MTR_7g065910 43.671 158 78 2 87 242 23 171 6.55e-31 117
MsG0180001974.01.T01 MTR_7g106560 56.075 107 47 0 128 234 91 197 9.34e-31 113
MsG0180001974.01.T01 MTR_6g464570 49.180 122 56 3 64 181 27 146 1.02e-30 112
MsG0180001974.01.T01 MTR_6g090600 52.941 102 48 0 71 172 1 102 1.25e-30 110
MsG0180001974.01.T01 MTR_6g026910 43.333 150 49 1 95 244 55 168 2.14e-30 113
MsG0180001974.01.T01 MTR_0340s0010 65.854 82 24 1 43 124 96 173 1.87e-29 109
MsG0180001974.01.T01 MTR_0219s0080 71.831 71 16 1 43 113 52 118 2.44e-29 107
MsG0180001974.01.T01 MTR_2g067720 49.138 116 45 3 9 114 5 116 2.95e-29 107
MsG0180001974.01.T01 MTR_6g037570 80.519 77 15 0 58 134 80 156 3.51e-29 110
MsG0180001974.01.T01 MTR_3g437000 60.976 82 31 1 58 138 46 127 5.46e-29 106
MsG0180001974.01.T01 MTR_8g445570 52.778 108 50 1 118 225 4 110 8.08e-29 105
MsG0180001974.01.T01 MTR_2g026605 83.929 56 9 0 58 113 65 120 3.18e-28 104
MsG0180001974.01.T01 MTR_0341s0040 62.195 82 27 1 43 124 54 131 6.96e-28 103
MsG0180001974.01.T01 MTR_6g018990 49.153 118 25 2 43 160 54 136 1.03e-27 103
MsG0180001974.01.T01 MTR_4g049670 60.674 89 34 1 76 163 43 131 1.10e-27 103
MsG0180001974.01.T01 MTR_1g012760 36.735 196 114 4 29 223 16 202 1.34e-27 107
MsG0180001974.01.T01 MTR_1g012760 36.181 199 117 4 26 223 24 213 1.81e-27 107
MsG0180001974.01.T01 MTR_6g019000 66.216 74 21 1 41 114 52 121 2.23e-27 102
MsG0180001974.01.T01 MTR_8g028020 54.082 98 45 0 146 243 1 98 7.88e-27 101
MsG0180001974.01.T01 MTR_5g070810 48.571 105 50 2 72 174 10 112 2.96e-26 99.4
MsG0180001974.01.T01 MTR_3g110070 67.606 71 19 1 43 113 54 120 4.15e-26 99.4
MsG0180001974.01.T01 MTR_1g099140 33.511 188 120 2 59 242 89 275 8.71e-26 105
MsG0180001974.01.T01 MTR_7g010970 40.278 144 55 3 102 243 6 120 9.47e-26 101
MsG0180001974.01.T01 MTR_4g100470 40.690 145 75 2 98 242 57 190 2.21e-25 99.4
MsG0180001974.01.T01 MTR_2g030885 59.551 89 32 2 41 129 51 135 2.46e-25 104
MsG0180001974.01.T01 MTR_4g051612 77.193 57 13 0 58 114 80 136 3.53e-25 99.0
MsG0180001974.01.T01 MTR_2g090505 32.642 193 123 3 59 247 89 278 5.49e-25 101
MsG0180001974.01.T01 MTR_6g029530 37.949 195 102 7 37 214 474 666 1.40e-24 102
MsG0180001974.01.T01 MTR_5g079780 63.218 87 18 2 1 86 1 74 1.46e-24 95.5
MsG0180001974.01.T01 MTR_7g064870 43.750 112 60 2 60 169 50 160 3.92e-24 95.5
MsG0180001974.01.T01 MTR_1g043440 35.000 200 110 4 45 235 81 269 5.70e-24 98.2
MsG0180001974.01.T01 MTR_5g079560 40.000 135 76 2 43 172 64 198 8.12e-24 96.3
MsG0180001974.01.T01 MTR_0632s0010 53.409 88 41 0 155 242 5 92 1.71e-22 89.7
MsG0180001974.01.T01 MTR_3g116710 37.324 142 84 2 59 196 84 224 1.94e-22 92.8
MsG0180001974.01.T01 MTR_5g098640 57.895 76 27 2 33 108 44 114 8.70e-22 89.4
MsG0180001974.01.T01 MTR_2g073060 61.905 63 24 0 58 120 106 168 1.01e-21 89.0
MsG0180001974.01.T01 MTR_2g461140 31.280 211 97 6 8 213 10 177 2.61e-21 88.2
MsG0180001974.01.T01 MTR_0528s0010 37.313 134 83 1 106 239 1 133 5.87e-21 86.3
MsG0180001974.01.T01 MTR_4g113170 46.610 118 56 3 128 238 72 189 1.93e-20 90.5
MsG0180001974.01.T01 MTR_1g080040 49.485 97 47 1 102 196 5 101 3.97e-20 84.0
MsG0180001974.01.T01 MTR_4g066090 52.941 85 39 1 133 217 70 153 4.88e-20 84.0
MsG0180001974.01.T01 MTR_2g023130 30.387 181 86 2 59 239 30 170 5.17e-20 85.9
MsG0180001974.01.T01 MTR_3g045850 42.857 91 51 1 43 133 62 151 3.92e-19 81.6
MsG0180001974.01.T01 MTR_8g059020 63.492 63 19 1 43 105 145 203 5.62e-19 83.6
MsG0180001974.01.T01 MTR_7g057800 55.072 69 31 0 52 120 188 256 1.29e-18 82.8
MsG0180001974.01.T01 MTR_7g057800 39.326 89 46 1 35 115 42 130 2.50e-15 73.6
MsG0180001974.01.T01 MTR_7g034570 39.831 118 59 2 96 211 74 181 4.69e-18 79.7
MsG0180001974.01.T01 MTR_8g467980 48.235 85 44 0 43 127 60 144 5.48e-18 78.2
MsG0180001974.01.T01 MTR_1g075420 43.182 88 49 1 43 130 29 115 6.99e-18 77.8
MsG0180001974.01.T01 MTR_7g056020 27.419 186 116 1 59 244 389 555 1.07e-17 82.4
MsG0180001974.01.T01 MTR_8g037210 46.392 97 32 1 146 242 1 77 1.15e-17 80.1
MsG0180001974.01.T01 MTR_5g032220 29.787 188 111 4 59 242 77 247 1.74e-17 81.6
MsG0180001974.01.T01 MTR_7g024830 52.113 71 34 0 155 225 1 71 6.98e-17 73.2
MsG0180001974.01.T01 MTR_2g451070 55.738 61 26 1 58 117 62 122 1.57e-16 73.9
MsG0180001974.01.T01 MTR_8g016360 39.474 114 63 4 58 167 22 133 1.66e-16 73.9
MsG0180001974.01.T01 MTR_1g075860 47.619 84 42 1 43 124 39 122 2.67e-16 73.2
MsG0180001974.01.T01 MTR_4g132765 31.527 203 70 4 43 243 251 386 7.75e-16 77.0
MsG0180001974.01.T01 MTR_5g046145 33.775 151 90 3 59 205 125 269 8.12e-16 76.3
MsG0180001974.01.T01 MTR_2g105460 62.712 59 18 1 43 101 84 138 1.29e-15 76.3
MsG0180001974.01.T01 MTR_5g060510 49.038 104 30 1 58 161 78 158 1.35e-15 72.8
MsG0180001974.01.T01 MTR_8g446840 45.783 83 40 1 114 196 2 79 1.75e-15 70.1
MsG0180001974.01.T01 MTR_5g072970 34.513 113 67 1 127 239 35 140 2.76e-15 73.9
MsG0180001974.01.T01 MTR_4g051890 54.839 62 28 0 146 207 1 62 4.13e-15 68.2
MsG0180001974.01.T01 MTR_5g015710 41.584 101 57 1 43 141 66 166 6.39e-15 71.6
MsG0180001974.01.T01 MTR_3g058780 59.701 67 20 2 21 80 27 93 3.35e-14 72.4
MsG0180001974.01.T01 MTR_2g027000 31.169 154 84 3 80 211 17 170 3.65e-14 68.9
MsG0180001974.01.T01 MTR_3g007220 41.176 85 40 1 155 229 1 85 4.40e-12 61.6
MsG0180001974.01.T01 MTR_1g043340 59.524 42 17 0 144 185 3 44 2.64e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGGATGACTTGCTTAAT+TGG 0.201628 1:+30102518 MsG0180001974.01.T01:CDS
TCAACGGGCTCAAGAAAATA+TGG 0.253038 1:+30102673 MsG0180001974.01.T01:CDS
AAATTTATCAAAATATTTCT+TGG 0.263817 1:-30102874 None:intergenic
GGGTGCTTGTTCATGGTTAT+TGG 0.264928 1:+30102694 MsG0180001974.01.T01:CDS
TGGGGATTGAAGATTCTTAA+TGG 0.312300 1:+30102742 MsG0180001974.01.T01:CDS
ACAATGAACGTCAACAAATA+TGG 0.321929 1:+30102941 MsG0180001974.01.T01:CDS
TGGTTATTGGATATCTTAGT+AGG 0.336374 1:+30102707 MsG0180001974.01.T01:CDS
ACGACATGAAATGGAAAGAT+AGG 0.342838 1:+30102500 MsG0180001974.01.T01:CDS
AGCTCCATCAATGTTTGGTT+TGG 0.354567 1:-30102388 None:intergenic
TTCATTCTTCTTTAATCTAC+CGG 0.361157 1:-30102812 None:intergenic
TGACAACGCGGAAGATGATC+TGG 0.367511 1:+30102305 None:intergenic
AAAATATGGGTGCTTGTTCA+TGG 0.374708 1:+30102687 MsG0180001974.01.T01:CDS
TTTGGTTTGGCTTCAACCTT+AGG 0.378397 1:-30102375 None:intergenic
TTAGAAGGAAACATTCTTGC+CGG 0.399216 1:+30102793 MsG0180001974.01.T01:CDS
GTGATGGAGCCGGCTTTAGA+AGG 0.403304 1:+30102778 MsG0180001974.01.T01:CDS
ACGGAAGCTCCATCAATGTT+TGG 0.409660 1:-30102393 None:intergenic
TCTTGGAAGCATCTTGCTCT+TGG 0.410023 1:-30102857 None:intergenic
TAGTAGGCAAACAAAGGAAT+GGG 0.421072 1:+30102723 MsG0180001974.01.T01:CDS
GAGCCCGTTGACTCATGCTT+CGG 0.424059 1:-30102661 None:intergenic
TCACACACTAGTCGCAAGAT+TGG 0.427141 1:-30102604 None:intergenic
TAGGGATGACTTGCTTAATT+GGG 0.449005 1:+30102519 MsG0180001974.01.T01:CDS
GCAATATCTAATCTCGAAGT+TGG 0.455480 1:+30102993 MsG0180001974.01.T01:CDS
ATCTTTCCATTTCATGTCGT+CGG 0.466221 1:-30102497 None:intergenic
AAACCGAAGCATGAGTCAAC+GGG 0.477626 1:+30102658 MsG0180001974.01.T01:CDS
GAAGCCAAACCAAACATTGA+TGG 0.490639 1:+30102384 MsG0180001974.01.T01:CDS
CAAATATGGAAGGCAAATAG+AGG 0.497876 1:+30102955 MsG0180001974.01.T01:CDS
TCAACTTCGTTCGCATGAAG+TGG 0.505511 1:-30102456 None:intergenic
CGGAGATGTCAAACCGCCTA+AGG 0.512056 1:+30102359 MsG0180001974.01.T01:CDS
AGAATGTTTCCTTCTAAAGC+CGG 0.525189 1:-30102787 None:intergenic
CAACGGGCTCAAGAAAATAT+GGG 0.542192 1:+30102674 MsG0180001974.01.T01:CDS
TTAGTAGGCAAACAAAGGAA+TGG 0.546651 1:+30102722 MsG0180001974.01.T01:CDS
GGCACGTCGTCAAGCAAACA+AGG 0.553804 1:+30102540 MsG0180001974.01.T01:CDS
CGTCGTCAAGCAAACAAGGC+GGG 0.556767 1:+30102544 MsG0180001974.01.T01:CDS
AAAACCGAAGCATGAGTCAA+CGG 0.559172 1:+30102657 MsG0180001974.01.T01:CDS
ATATCTAATCTCGAAGTTGG+AGG 0.561182 1:+30102996 MsG0180001974.01.T01:CDS
TCACAACCATGTGATGGAGC+CGG 0.566635 1:+30102768 MsG0180001974.01.T01:CDS
CGAACGAAGTTGACACGGCT+AGG 0.568073 1:+30102466 MsG0180001974.01.T01:CDS
CATATTTAGAAGCTTGAACA+TGG 0.569918 1:-30102416 None:intergenic
CGACATGAAATGGAAAGATA+GGG 0.573573 1:+30102501 MsG0180001974.01.T01:CDS
CTAAAGCCGGCTCCATCACA+TGG 0.575630 1:-30102774 None:intergenic
TTTAGAAGCTTGAACATGGA+CGG 0.576924 1:-30102412 None:intergenic
GGTTTGGCTTCAACCTTAGG+CGG 0.588602 1:-30102372 None:intergenic
TCTTGCGACTAGTGTGTGAA+AGG 0.597014 1:+30102608 MsG0180001974.01.T01:CDS
GCTTCTAAATATGTTGACTC+CGG 0.597738 1:+30102426 MsG0180001974.01.T01:CDS
GACAACGCGGAAGATGATCT+GGG 0.600444 1:+30102306 None:intergenic
TGGAGTTCACAACCATGTGA+TGG 0.602236 1:+30102762 MsG0180001974.01.T01:CDS
CAACTTCGTTCGCATGAAGT+GGG 0.608031 1:-30102455 None:intergenic
TGAACGTCAACAAATATGGA+AGG 0.625024 1:+30102945 MsG0180001974.01.T01:CDS
CGACTAGTGTGTGAAAGGAG+TGG 0.632964 1:+30102613 MsG0180001974.01.T01:CDS
CGCATGAAGTGGGAGGACAC+CGG 0.640206 1:-30102445 None:intergenic
TTCGAGATTAGATATTGCAA+CGG 0.647442 1:-30102988 None:intergenic
AGTAGGCAAACAAAGGAATG+GGG 0.656856 1:+30102724 MsG0180001974.01.T01:CDS
ATATCTTAGTAGGCAAACAA+AGG 0.657038 1:+30102717 MsG0180001974.01.T01:CDS
CTTCGTTCGCATGAAGTGGG+AGG 0.660860 1:-30102452 None:intergenic
TCATGCGAACGAAGTTGACA+CGG 0.673105 1:+30102461 MsG0180001974.01.T01:CDS
ACGTCGTCAAGCAAACAAGG+CGG 0.742765 1:+30102543 MsG0180001974.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATCAAAATATTTCT+TGG - Chr1:30102877-30102896 None:intergenic 10.0%
! TTCATTCTTCTTTAATCTAC+CGG - Chr1:30102815-30102834 None:intergenic 25.0%
!! CCAAATTTTGTCGAAAAATT+CGG + Chr1:30102339-30102358 MsG0180001974.01.T01:CDS 25.0%
!! TTGATATTTTTCATGCAATG+TGG - Chr1:30102913-30102932 None:intergenic 25.0%
ACAATGAACGTCAACAAATA+TGG + Chr1:30102941-30102960 MsG0180001974.01.T01:CDS 30.0%
ATATCTTAGTAGGCAAACAA+AGG + Chr1:30102717-30102736 MsG0180001974.01.T01:CDS 30.0%
CATATTTAGAAGCTTGAACA+TGG - Chr1:30102419-30102438 None:intergenic 30.0%
TGGTTATTGGATATCTTAGT+AGG + Chr1:30102707-30102726 MsG0180001974.01.T01:CDS 30.0%
TTCGAGATTAGATATTGCAA+CGG - Chr1:30102991-30103010 None:intergenic 30.0%
!! CCGAATTTTTCGACAAAATT+TGG - Chr1:30102342-30102361 None:intergenic 30.0%
!!! TCATGCTTCGGTTTTTTTTT+CGG - Chr1:30102652-30102671 None:intergenic 30.0%
AAAATATGGGTGCTTGTTCA+TGG + Chr1:30102687-30102706 MsG0180001974.01.T01:CDS 35.0%
ACGACATGAAATGGAAAGAT+AGG + Chr1:30102500-30102519 MsG0180001974.01.T01:CDS 35.0%
ATATCTAATCTCGAAGTTGG+AGG + Chr1:30102996-30103015 MsG0180001974.01.T01:CDS 35.0%
ATCTTTCCATTTCATGTCGT+CGG - Chr1:30102500-30102519 None:intergenic 35.0%
CAAATATGGAAGGCAAATAG+AGG + Chr1:30102955-30102974 MsG0180001974.01.T01:CDS 35.0%
CGACATGAAATGGAAAGATA+GGG + Chr1:30102501-30102520 MsG0180001974.01.T01:CDS 35.0%
GCAATATCTAATCTCGAAGT+TGG + Chr1:30102993-30103012 MsG0180001974.01.T01:CDS 35.0%
TAGTAGGCAAACAAAGGAAT+GGG + Chr1:30102723-30102742 MsG0180001974.01.T01:CDS 35.0%
TGAACGTCAACAAATATGGA+AGG + Chr1:30102945-30102964 MsG0180001974.01.T01:CDS 35.0%
TGGGGATTGAAGATTCTTAA+TGG + Chr1:30102742-30102761 MsG0180001974.01.T01:CDS 35.0%
TTAGAAGGAAACATTCTTGC+CGG + Chr1:30102793-30102812 MsG0180001974.01.T01:CDS 35.0%
TTAGTAGGCAAACAAAGGAA+TGG + Chr1:30102722-30102741 MsG0180001974.01.T01:CDS 35.0%
TTTAGAAGCTTGAACATGGA+CGG - Chr1:30102415-30102434 None:intergenic 35.0%
!! AGAATGTTTCCTTCTAAAGC+CGG - Chr1:30102790-30102809 None:intergenic 35.0%
!! ATAGGGATGACTTGCTTAAT+TGG + Chr1:30102518-30102537 MsG0180001974.01.T01:CDS 35.0%
!! GCTTCTAAATATGTTGACTC+CGG + Chr1:30102426-30102445 MsG0180001974.01.T01:CDS 35.0%
!! TAGGGATGACTTGCTTAATT+GGG + Chr1:30102519-30102538 MsG0180001974.01.T01:CDS 35.0%
!!! TTTTTTCCGACGACATGAAA+TGG + Chr1:30102491-30102510 MsG0180001974.01.T01:CDS 35.0%
AAAACCGAAGCATGAGTCAA+CGG + Chr1:30102657-30102676 MsG0180001974.01.T01:CDS 40.0%
AGCTCCATCAATGTTTGGTT+TGG - Chr1:30102391-30102410 None:intergenic 40.0%
AGTAGGCAAACAAAGGAATG+GGG + Chr1:30102724-30102743 MsG0180001974.01.T01:CDS 40.0%
GAAGCCAAACCAAACATTGA+TGG + Chr1:30102384-30102403 MsG0180001974.01.T01:CDS 40.0%
! CAACGGGCTCAAGAAAATAT+GGG + Chr1:30102674-30102693 MsG0180001974.01.T01:CDS 40.0%
! TCAACGGGCTCAAGAAAATA+TGG + Chr1:30102673-30102692 MsG0180001974.01.T01:CDS 40.0%
!! TTTGGTTTGGCTTCAACCTT+AGG - Chr1:30102378-30102397 None:intergenic 40.0%
AAACCGAAGCATGAGTCAAC+GGG + Chr1:30102658-30102677 MsG0180001974.01.T01:CDS 45.0%
ACGGAAGCTCCATCAATGTT+TGG - Chr1:30102396-30102415 None:intergenic 45.0%
CAACTTCGTTCGCATGAAGT+GGG - Chr1:30102458-30102477 None:intergenic 45.0%
GGGTGCTTGTTCATGGTTAT+TGG + Chr1:30102694-30102713 MsG0180001974.01.T01:CDS 45.0%
TCAACTTCGTTCGCATGAAG+TGG - Chr1:30102459-30102478 None:intergenic 45.0%
TCACACACTAGTCGCAAGAT+TGG - Chr1:30102607-30102626 None:intergenic 45.0%
TCATGCGAACGAAGTTGACA+CGG + Chr1:30102461-30102480 MsG0180001974.01.T01:CDS 45.0%
TCTTGCGACTAGTGTGTGAA+AGG + Chr1:30102608-30102627 MsG0180001974.01.T01:CDS 45.0%
TGGAGTTCACAACCATGTGA+TGG + Chr1:30102762-30102781 MsG0180001974.01.T01:CDS 45.0%
!! TCTTGGAAGCATCTTGCTCT+TGG - Chr1:30102860-30102879 None:intergenic 45.0%
ACGTCGTCAAGCAAACAAGG+CGG + Chr1:30102543-30102562 MsG0180001974.01.T01:CDS 50.0%
CGACTAGTGTGTGAAAGGAG+TGG + Chr1:30102613-30102632 MsG0180001974.01.T01:CDS 50.0%
! GGTTTGGCTTCAACCTTAGG+CGG - Chr1:30102375-30102394 None:intergenic 50.0%
! TCACAACCATGTGATGGAGC+CGG + Chr1:30102768-30102787 MsG0180001974.01.T01:CDS 50.0%
CGAACGAAGTTGACACGGCT+AGG + Chr1:30102466-30102485 MsG0180001974.01.T01:CDS 55.0%
CGGAGATGTCAAACCGCCTA+AGG + Chr1:30102359-30102378 MsG0180001974.01.T01:CDS 55.0%
CGTCGTCAAGCAAACAAGGC+GGG + Chr1:30102544-30102563 MsG0180001974.01.T01:CDS 55.0%
CTTCGTTCGCATGAAGTGGG+AGG - Chr1:30102455-30102474 None:intergenic 55.0%
GGCACGTCGTCAAGCAAACA+AGG + Chr1:30102540-30102559 MsG0180001974.01.T01:CDS 55.0%
! CTAAAGCCGGCTCCATCACA+TGG - Chr1:30102777-30102796 None:intergenic 55.0%
!! GAGCCCGTTGACTCATGCTT+CGG - Chr1:30102664-30102683 None:intergenic 55.0%
!! GTGATGGAGCCGGCTTTAGA+AGG + Chr1:30102778-30102797 MsG0180001974.01.T01:CDS 55.0%
CGCATGAAGTGGGAGGACAC+CGG - Chr1:30102448-30102467 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 30102319 30103065 30102319 ID=MsG0180001974.01;Name=MsG0180001974.01
Chr1 mRNA 30102319 30103065 30102319 ID=MsG0180001974.01.T01;Parent=MsG0180001974.01;Name=MsG0180001974.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|248
Chr1 exon 30102319 30103065 30102319 ID=MsG0180001974.01.T01:exon:42498;Parent=MsG0180001974.01.T01
Chr1 CDS 30102319 30103065 30102319 ID=MsG0180001974.01.T01:cds;Parent=MsG0180001974.01.T01
Gene Sequence

>MsG0180001974.01.T01

ATGATCTGGGAGAGACAAAACCAAATTTTGTCGAAAAATTCGGAGATGTCAAACCGCCTAAGGTTGAAGCCAAACCAAACATTGATGGAGCTTCCGTCCATGTTCAAGCTTCTAAATATGTTGACTCCGGTGTCCTCCCACTTCATGCGAACGAAGTTGACACGGCTAGGTTTTTTTTCCGACGACATGAAATGGAAAGATAGGGATGACTTGCTTAATTGGGCACGTCGTCAAGCAAACAAGGCGGGATTTACAATTGTTATACAAAGATCAAGCTTGATCAATCCAATCTTGCGACTAGTGTGTGAAAGGAGTGGAGCTCACAAAGTGCCGAAAAAAAAACCGAAGCATGAGTCAACGGGCTCAAGAAAATATGGGTGCTTGTTCATGGTTATTGGATATCTTAGTAGGCAAACAAAGGAATGGGGATTGAAGATTCTTAATGGAGTTCACAACCATGTGATGGAGCCGGCTTTAGAAGGAAACATTCTTGCCGGTAGATTAAAGAAGAATGAAAAGAAGATTGTACGTGACTTGACCAAGAGCAAGATGCTTCCAAGAAATATTTTGATAAATTTGAAGAACAAAAGACCACATTGCATGAAAAATATCAAGCAAGTATACAATGAACGTCAACAAATATGGAAGGCAAATAGAGGTGACAAGACGCCGTTGCAATATCTAATCTCGAAGTTGGAGGAGCACAACTATACTTATTTCTCAAGAACACGAAAGTACTACTATTGA
Protein sequence

>MsG0180001974.01.T01

MIWERQNQILSKNSEMSNRLRLKPNQTLMELPSMFKLLNMLTPVSSHFMRTKLTRLGFFSDDMKWKDRDDLLNWARRQANKAGFTIVIQRSSLINPILRLVCERSGAHKVPKKKPKHESTGSRKYGCLFMVIGYLSRQTKEWGLKILNGVHNHVMEPALEGNILAGRLKKNEKKIVRDLTKSKMLPRNILINLKNKRPHCMKNIKQVYNERQQIWKANRGDKTPLQYLISKLEEHNYTYFSRTRKYYY*