Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002047.01.T01 | XP_003588383.1 | 74.349 | 269 | 48 | 5 | 1 | 249 | 1 | 268 | 3.41E-118 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002047.01.T01 | P69781 | 41.729 | 266 | 125 | 9 | 1 | 249 | 1 | 253 | 3.85E-45 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002047.01.T01 | G7IB47 | 74.349 | 269 | 48 | 5 | 1 | 249 | 1 | 268 | 1.63e-118 | 351 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180002047.01.T01 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002047.01.T01 | MTR_1g006650 | 74.349 | 269 | 48 | 5 | 1 | 249 | 1 | 268 | 4.13e-122 | 351 |
| MsG0180002047.01.T01 | MTR_3g109760 | 47.059 | 238 | 101 | 9 | 19 | 249 | 22 | 241 | 6.38e-55 | 179 |
| MsG0180002047.01.T01 | MTR_8g013950 | 41.530 | 183 | 73 | 5 | 78 | 249 | 101 | 260 | 1.86e-32 | 121 |
| MsG0180002047.01.T01 | MTR_8g076340 | 41.667 | 168 | 80 | 5 | 82 | 249 | 103 | 252 | 6.38e-26 | 103 |
| MsG0180002047.01.T01 | MTR_6g032830 | 33.333 | 198 | 97 | 7 | 86 | 249 | 30 | 226 | 7.07e-22 | 91.7 |
| MsG0180002047.01.T01 | MTR_5g021340 | 38.172 | 186 | 93 | 5 | 82 | 249 | 153 | 334 | 5.48e-21 | 91.3 |
| MsG0180002047.01.T01 | MTR_4g071590 | 33.929 | 168 | 74 | 6 | 82 | 249 | 115 | 245 | 3.80e-20 | 87.4 |
| MsG0180002047.01.T01 | MTR_4g471590 | 33.929 | 168 | 74 | 6 | 82 | 249 | 115 | 245 | 3.80e-20 | 87.4 |
| MsG0180002047.01.T01 | MTR_3g117380 | 31.361 | 169 | 98 | 3 | 82 | 249 | 112 | 263 | 1.35e-18 | 83.6 |
| MsG0180002047.01.T01 | MTR_1g094930 | 32.850 | 207 | 92 | 7 | 87 | 249 | 73 | 276 | 1.41e-17 | 80.9 |
| MsG0180002047.01.T01 | MTR_7g085410 | 35.106 | 188 | 82 | 8 | 92 | 249 | 45 | 222 | 2.44e-16 | 76.6 |
| MsG0180002047.01.T01 | MTR_1g046680 | 83.333 | 36 | 6 | 0 | 214 | 249 | 171 | 206 | 3.20e-16 | 75.9 |
| MsG0180002047.01.T01 | MTR_1g116010 | 63.158 | 57 | 20 | 1 | 194 | 249 | 142 | 198 | 5.56e-16 | 75.5 |
| MsG0180002047.01.T01 | MTR_5g007600 | 77.778 | 36 | 8 | 0 | 214 | 249 | 258 | 293 | 1.10e-14 | 72.8 |
| MsG0180002047.01.T01 | MTR_5g007600 | 77.778 | 36 | 8 | 0 | 214 | 249 | 156 | 191 | 7.32e-14 | 70.5 |
| MsG0180002047.01.T01 | MTR_1g094930 | 80.000 | 35 | 7 | 0 | 215 | 249 | 147 | 181 | 1.98e-14 | 70.9 |
| MsG0180002047.01.T01 | MTR_2g094600 | 77.143 | 35 | 8 | 0 | 215 | 249 | 216 | 250 | 4.20e-14 | 70.9 |
| MsG0180002047.01.T01 | MTR_4g058910 | 74.286 | 35 | 9 | 0 | 215 | 249 | 314 | 348 | 4.60e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002047.01.T01 | AT5G25830 | 41.729 | 266 | 125 | 9 | 1 | 249 | 1 | 253 | 3.92e-46 | 157 |
| MsG0180002047.01.T01 | AT4G32890 | 39.837 | 246 | 101 | 8 | 21 | 249 | 16 | 231 | 3.26e-40 | 141 |
| MsG0180002047.01.T01 | AT2G45050 | 35.821 | 201 | 89 | 8 | 58 | 249 | 44 | 213 | 6.69e-21 | 89.0 |
| MsG0180002047.01.T01 | AT5G66320 | 35.821 | 201 | 90 | 6 | 75 | 249 | 96 | 283 | 2.62e-20 | 88.6 |
| MsG0180002047.01.T01 | AT5G66320 | 35.821 | 201 | 90 | 6 | 75 | 249 | 96 | 283 | 2.62e-20 | 88.6 |
| MsG0180002047.01.T01 | AT3G60530 | 37.870 | 169 | 61 | 6 | 82 | 249 | 67 | 192 | 4.31e-20 | 86.3 |
| MsG0180002047.01.T01 | AT4G34680 | 33.133 | 166 | 67 | 4 | 84 | 249 | 93 | 214 | 7.85e-19 | 83.6 |
| MsG0180002047.01.T01 | AT4G34680 | 33.133 | 166 | 67 | 4 | 84 | 249 | 93 | 214 | 7.85e-19 | 83.6 |
| MsG0180002047.01.T01 | AT4G36240 | 35.088 | 171 | 60 | 5 | 88 | 249 | 70 | 198 | 1.73e-18 | 82.0 |
| MsG0180002047.01.T01 | AT3G24050 | 80.556 | 36 | 7 | 0 | 214 | 249 | 193 | 228 | 1.95e-15 | 74.3 |
| MsG0180002047.01.T01 | AT1G08010 | 72.500 | 40 | 11 | 0 | 210 | 249 | 215 | 254 | 3.40e-14 | 71.2 |
| MsG0180002047.01.T01 | AT1G08010 | 72.500 | 40 | 11 | 0 | 210 | 249 | 215 | 254 | 3.40e-14 | 71.2 |
| MsG0180002047.01.T01 | AT1G08010 | 72.500 | 40 | 11 | 0 | 210 | 249 | 215 | 254 | 3.40e-14 | 71.2 |
| MsG0180002047.01.T01 | AT3G54810 | 80.000 | 35 | 7 | 0 | 215 | 249 | 229 | 263 | 1.16e-13 | 69.7 |
| MsG0180002047.01.T01 | AT3G54810 | 80.000 | 35 | 7 | 0 | 215 | 249 | 229 | 263 | 1.16e-13 | 69.7 |
| MsG0180002047.01.T01 | AT1G08000 | 72.500 | 40 | 11 | 0 | 210 | 249 | 213 | 252 | 5.84e-13 | 67.8 |
| MsG0180002047.01.T01 | AT1G08000 | 72.500 | 40 | 11 | 0 | 210 | 249 | 213 | 252 | 5.84e-13 | 67.8 |
| MsG0180002047.01.T01 | AT3G51080 | 77.143 | 35 | 8 | 0 | 215 | 249 | 221 | 255 | 1.02e-12 | 67.0 |
| MsG0180002047.01.T01 | AT2G28340 | 72.727 | 33 | 9 | 0 | 217 | 249 | 193 | 225 | 1.86e-11 | 63.2 |
Find 94 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTCACTGTCCTTTCTTCT+TGG | 0.090798 | 1:+31656396 | None:intergenic |
| AAAACGATTCCTCACCAATA+TGG | 0.265150 | 1:+31656709 | None:intergenic |
| TCAAAAGATGCAACTGATAT+CGG | 0.281999 | 1:-31656673 | MsG0180002047.01.T01:CDS |
| CCAATCTCAGGAACGACATT+AGG | 0.287162 | 1:+31657438 | None:intergenic |
| GCAGTCTTTGCCTGCTTCCT+TGG | 0.291400 | 1:+31656420 | None:intergenic |
| TATATTCAACAAGGAAGTTT+TGG | 0.298704 | 1:-31656586 | MsG0180002047.01.T01:CDS |
| CGACGTCATTGTTGAGCTTA+AGG | 0.353365 | 1:+31657582 | None:intergenic |
| AAAACTTCCTTGTTGAATAT+AGG | 0.362486 | 1:+31656588 | None:intergenic |
| AAGACGCCACAATGGCGAAC+TGG | 0.366662 | 1:-31656327 | MsG0180002047.01.T01:CDS |
| CTGGAATGGATTTCCCATAT+TGG | 0.368181 | 1:-31656723 | MsG0180002047.01.T01:CDS |
| TGTTGAATATAGGACTGTTT+CGG | 0.382615 | 1:+31656598 | None:intergenic |
| GTTGGGTTGGGAAAGCTCGC+GGG | 0.398800 | 1:+31656620 | None:intergenic |
| AGGACTGTTTCGGTTGGGTT+GGG | 0.406165 | 1:+31656608 | None:intergenic |
| AACAGTGACGGTGGGTAAGG+TGG | 0.408327 | 1:+31656443 | None:intergenic |
| CAATGGCGAACTGGGCCTAA+TGG | 0.413863 | 1:-31656318 | MsG0180002047.01.T01:CDS |
| CCTAATGTCGTTCCTGAGAT+TGG | 0.439413 | 1:-31657438 | MsG0180002047.01.T01:CDS |
| CAATCTCAGGAACGACATTA+GGG | 0.440367 | 1:+31657439 | None:intergenic |
| CTCTTGCTACGGGCCTTAGC+TGG | 0.442400 | 1:+31656561 | None:intergenic |
| GCTCGCGGGGTTCTTCATCC+TGG | 0.442491 | 1:+31656634 | None:intergenic |
| TGTCGGAGGAAAAGGTGGTT+TGG | 0.443866 | 1:+31657642 | None:intergenic |
| AAACGATTCCTCACCAATAT+GGG | 0.454989 | 1:+31656710 | None:intergenic |
| AATATAGGACTGTTTCGGTT+GGG | 0.459476 | 1:+31656603 | None:intergenic |
| TAGGACTGTTTCGGTTGGGT+TGG | 0.462649 | 1:+31656607 | None:intergenic |
| AGTGTTGTTGTCGGAGGAAA+AGG | 0.462952 | 1:+31657634 | None:intergenic |
| GTGGAGATGGTCGGAGGTGT+CGG | 0.465813 | 1:-31656365 | MsG0180002047.01.T01:CDS |
| AAGGACAGTGACGGAGGGTC+AGG | 0.466229 | 1:-31656387 | MsG0180002047.01.T01:CDS |
| ACAGTGACGGTGGGTAAGGT+GGG | 0.468979 | 1:+31656444 | None:intergenic |
| ACGATGACGCTACATCATTT+CGG | 0.471634 | 1:-31657559 | MsG0180002047.01.T01:CDS |
| GCCCACGAGTCCTCTTGCTA+CGG | 0.473059 | 1:+31656550 | None:intergenic |
| CAATATGGGAAATCCATTCC+AGG | 0.475930 | 1:+31656724 | None:intergenic |
| CAGTGACGGTGGGTAAGGTG+GGG | 0.477027 | 1:+31656445 | None:intergenic |
| AGACGCCACAATGGCGAACT+GGG | 0.479058 | 1:-31656326 | MsG0180002047.01.T01:CDS |
| GAATATAGGACTGTTTCGGT+TGG | 0.481982 | 1:+31656602 | None:intergenic |
| GACGGTAACGGTGGAGGAGG+AGG | 0.483071 | 1:+31657500 | None:intergenic |
| GTTAGCTCGTCATCATTGTC+CGG | 0.486841 | 1:-31657468 | MsG0180002047.01.T01:CDS |
| ATGATTTAGCGGACCTGGAA+TGG | 0.488654 | 1:-31656737 | MsG0180002047.01.T01:CDS |
| TGGAACAGTGACGGTGGGTA+AGG | 0.489751 | 1:+31656440 | None:intergenic |
| AAATTCTGACAGCCAATCTC+AGG | 0.491898 | 1:+31657426 | None:intergenic |
| CAAAAGATGCAACTGATATC+GGG | 0.494290 | 1:-31656672 | MsG0180002047.01.T01:CDS |
| AGTGACGGTGGGTAAGGTGG+GGG | 0.504958 | 1:+31656446 | None:intergenic |
| GGTGGTTTGGAAAATGTTGT+TGG | 0.508256 | 1:+31657655 | None:intergenic |
| GACGCGAGCTCCAGTCGCAA+GGG | 0.513095 | 1:+31656526 | None:intergenic |
| ACCAACCTTGACTCGGCCAC+AGG | 0.517123 | 1:-31657534 | MsG0180002047.01.T01:CDS |
| CTCATCAACAATGAAATTGT+CGG | 0.521637 | 1:+31657610 | None:intergenic |
| CGACAATTTCATTGTTGATG+AGG | 0.527118 | 1:-31657609 | MsG0180002047.01.T01:CDS |
| GAAATAGGAGGATGATTTAG+CGG | 0.531282 | 1:-31656748 | MsG0180002047.01.T01:intron |
| GCCCGTAGCAAGAGGACTCG+TGG | 0.533598 | 1:-31656552 | MsG0180002047.01.T01:CDS |
| CCCACGAGTCCTCTTGCTAC+GGG | 0.537511 | 1:+31656551 | None:intergenic |
| GGGCATGAAGGTGCGAAACC+AGG | 0.537637 | 1:-31656652 | MsG0180002047.01.T01:CDS |
| GGAGGATGATTTAGCGGACC+TGG | 0.539293 | 1:-31656742 | MsG0180002047.01.T01:CDS |
| CGTCACTGTTCCAAGGAAGC+AGG | 0.539327 | 1:-31656430 | MsG0180002047.01.T01:CDS |
| GACGGAGGGTCAGGTGGAGA+TGG | 0.539597 | 1:-31656378 | MsG0180002047.01.T01:CDS |
| GTTGTTGTCGGAGGAAAAGG+TGG | 0.541025 | 1:+31657637 | None:intergenic |
| TTCGGACACCAACCTTGACT+CGG | 0.544203 | 1:-31657541 | MsG0180002047.01.T01:CDS |
| GAGGGTCAGGTGGAGATGGT+CGG | 0.544742 | 1:-31656374 | MsG0180002047.01.T01:CDS |
| GGTTGGGTTGGGAAAGCTCG+CGG | 0.548630 | 1:+31656619 | None:intergenic |
| TTGGGTTGGGAAAGCTCGCG+GGG | 0.551387 | 1:+31656621 | None:intergenic |
| AAAGACTGCTCCAAGAAGAA+AGG | 0.555772 | 1:-31656406 | MsG0180002047.01.T01:CDS |
| GACGACGGTAACGGTGGAGG+AGG | 0.558507 | 1:+31657497 | None:intergenic |
| GACAGTGACGGAGGGTCAGG+TGG | 0.558691 | 1:-31656384 | MsG0180002047.01.T01:CDS |
| AGACGCGAGCTCCAGTCGCA+AGG | 0.560513 | 1:+31656525 | None:intergenic |
| GCAACTGATATCGGGCATGA+AGG | 0.569194 | 1:-31656664 | MsG0180002047.01.T01:CDS |
| CCCGTAGCAAGAGGACTCGT+GGG | 0.574146 | 1:-31656551 | MsG0180002047.01.T01:CDS |
| AGTTGCCTGTGGCCGAGTCA+AGG | 0.576465 | 1:+31657529 | None:intergenic |
| CAGCTAAGGCCCGTAGCAAG+AGG | 0.579929 | 1:-31656560 | MsG0180002047.01.T01:CDS |
| CTGCTTCCTTGGAACAGTGA+CGG | 0.581216 | 1:+31656431 | None:intergenic |
| ATTCCTTACGTAGGAATGGA+AGG | 0.582702 | 1:-31657683 | None:intergenic |
| AACGCTATTGACGACGGTAA+CGG | 0.582703 | 1:+31657488 | None:intergenic |
| ATTGACGACGGTAACGGTGG+AGG | 0.582861 | 1:+31657494 | None:intergenic |
| TTAGGCCCAGTTCGCCATTG+TGG | 0.583433 | 1:+31656321 | None:intergenic |
| TTAGCTCGTCATCATTGTCC+GGG | 0.587117 | 1:-31657467 | MsG0180002047.01.T01:CDS |
| ATTGTCGGTAGTGTTGTTGT+CGG | 0.590207 | 1:+31657625 | None:intergenic |
| GGTCAGGTGGAGATGGTCGG+AGG | 0.590443 | 1:-31656371 | MsG0180002047.01.T01:CDS |
| GTCGGTAGTGTTGTTGTCGG+AGG | 0.590547 | 1:+31657628 | None:intergenic |
| CTTCCTTGGAACAGTGACGG+TGG | 0.595267 | 1:+31656434 | None:intergenic |
| GCCTGTGGCCGAGTCAAGGT+TGG | 0.601677 | 1:+31657533 | None:intergenic |
| TGTGGCGTAAGATATAAGTC+TGG | 0.602138 | 1:-31656273 | MsG0180002047.01.T01:CDS |
| AACGACATTAGGGTCGCACC+CGG | 0.603894 | 1:+31657449 | None:intergenic |
| TACCCACCGTCACTGTTCCA+AGG | 0.608452 | 1:-31656437 | MsG0180002047.01.T01:CDS |
| ACGCGAGCTCCAGTCGCAAG+GGG | 0.622679 | 1:+31656527 | None:intergenic |
| ATGGATTTCCCATATTGGTG+AGG | 0.624760 | 1:-31656718 | MsG0180002047.01.T01:CDS |
| AAAACATTATGCAATGCTTG+TGG | 0.626014 | 1:-31656291 | MsG0180002047.01.T01:CDS |
| TTCCTTGGAACAGTGACGGT+GGG | 0.627737 | 1:+31656435 | None:intergenic |
| GGAGGCAGTTGAGTTGCCTG+TGG | 0.637223 | 1:+31657518 | None:intergenic |
| GCTATTGACGACGGTAACGG+TGG | 0.637591 | 1:+31657491 | None:intergenic |
| GAAGAAAGGACAGTGACGGA+GGG | 0.637953 | 1:-31656392 | MsG0180002047.01.T01:CDS |
| CCAAGAAGAAAGGACAGTGA+CGG | 0.640630 | 1:-31656396 | MsG0180002047.01.T01:CDS |
| CGTCATTGTTGAGCTTAAGG+AGG | 0.640781 | 1:+31657585 | None:intergenic |
| AGAAGAAAGGACAGTGACGG+AGG | 0.643844 | 1:-31656393 | MsG0180002047.01.T01:CDS |
| TGACAGACAAGACGCCACAA+TGG | 0.677162 | 1:-31656335 | MsG0180002047.01.T01:CDS |
| AGTTCTGACTCAGAAGAAGA+CGG | 0.679246 | 1:+31656480 | None:intergenic |
| CGCGAGCTCCAGTCGCAAGG+GGG | 0.693828 | 1:+31656528 | None:intergenic |
| AAACAGTCCTATATTCAACA+AGG | 0.707758 | 1:-31656595 | MsG0180002047.01.T01:CDS |
| CGAGCTAACGCTATTGACGA+CGG | 0.724527 | 1:+31657482 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAGAAACAATTGATTTTT+TGG | + | Chr1:31656824-31656843 | None:intergenic | 15.0% |
| !!! | ATCAATTGTTTCTTATAATA+AGG | - | Chr1:31656828-31656847 | MsG0180002047.01.T01:intron | 15.0% |
| !! | CATATACACATATAATATAC+CGG | + | Chr1:31656571-31656590 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | + | Chr1:31656733-31656752 | None:intergenic | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | - | Chr1:31656738-31656757 | MsG0180002047.01.T01:CDS | 20.0% |
| !!! | TTTGTGTTGAAATTTGAAAT+AGG | - | Chr1:31657174-31657193 | MsG0180002047.01.T01:intron | 20.0% |
| ! | AAAACTTCCTTGTTGAATAT+AGG | + | Chr1:31657352-31657371 | None:intergenic | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | + | Chr1:31656728-31656747 | None:intergenic | 25.0% |
| !! | TATATTCAACAAGGAAGTTT+TGG | - | Chr1:31657351-31657370 | MsG0180002047.01.T01:intron | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | - | Chr1:31656833-31656852 | MsG0180002047.01.T01:intron | 25.0% |
| !! | TTTTGTGGTACTCAATAATT+TGG | + | Chr1:31657016-31657035 | None:intergenic | 25.0% |
| !!! | AAGCATTGCATAATGTTTTT+GGG | + | Chr1:31657645-31657664 | None:intergenic | 25.0% |
| AAAACATTATGCAATGCTTG+TGG | - | Chr1:31657646-31657665 | MsG0180002047.01.T01:CDS | 30.0% | |
| AAACAGTCCTATATTCAACA+AGG | - | Chr1:31657342-31657361 | MsG0180002047.01.T01:intron | 30.0% | |
| AAGGGTTCAAAATCTTCAAA+TGG | + | Chr1:31656880-31656899 | None:intergenic | 30.0% | |
| CTCATCAACAATGAAATTGT+CGG | + | Chr1:31656330-31656349 | None:intergenic | 30.0% | |
| CTGTCATTATTGGCAAAAAA+GGG | + | Chr1:31656898-31656917 | None:intergenic | 30.0% | |
| TAGGCTAAATACAACAGAAT+GGG | - | Chr1:31656935-31656954 | MsG0180002047.01.T01:intron | 30.0% | |
| TCAAAAGATGCAACTGATAT+CGG | - | Chr1:31657264-31657283 | MsG0180002047.01.T01:intron | 30.0% | |
| TGTTGAATATAGGACTGTTT+CGG | + | Chr1:31657342-31657361 | None:intergenic | 30.0% | |
| ! | GCATGAGTTAGAAATTTTCA+TGG | + | Chr1:31656685-31656704 | None:intergenic | 30.0% |
| ! | GTGTTGAAATTTGAAATAGG+AGG | - | Chr1:31657177-31657196 | MsG0180002047.01.T01:intron | 30.0% |
| ! | TGTTTCAAGAGCATATATAG+AGG | - | Chr1:31657136-31657155 | MsG0180002047.01.T01:intron | 30.0% |
| !! | CAAGCATTGCATAATGTTTT+TGG | + | Chr1:31657646-31657665 | None:intergenic | 30.0% |
| !!! | GTTTTTTCTCCTGTCATTAT+TGG | + | Chr1:31656908-31656927 | None:intergenic | 30.0% |
| AAAACGATTCCTCACCAATA+TGG | + | Chr1:31657231-31657250 | None:intergenic | 35.0% | |
| AAACGATTCCTCACCAATAT+GGG | + | Chr1:31657230-31657249 | None:intergenic | 35.0% | |
| AATATAGGACTGTTTCGGTT+GGG | + | Chr1:31657337-31657356 | None:intergenic | 35.0% | |
| AGGAGAAAAAACAACTAGCT+AGG | - | Chr1:31656916-31656935 | MsG0180002047.01.T01:intron | 35.0% | |
| AGGCTAAATACAACAGAATG+GGG | - | Chr1:31656936-31656955 | MsG0180002047.01.T01:intron | 35.0% | |
| CAAAAGATGCAACTGATATC+GGG | - | Chr1:31657265-31657284 | MsG0180002047.01.T01:intron | 35.0% | |
| CCTGTCATTATTGGCAAAAA+AGG | + | Chr1:31656899-31656918 | None:intergenic | 35.0% | |
| CGACAATTTCATTGTTGATG+AGG | - | Chr1:31656328-31656347 | MsG0180002047.01.T01:CDS | 35.0% | |
| CTAGGCTAAATACAACAGAA+TGG | - | Chr1:31656934-31656953 | MsG0180002047.01.T01:intron | 35.0% | |
| GAAATAGGAGGATGATTTAG+CGG | - | Chr1:31657189-31657208 | MsG0180002047.01.T01:intron | 35.0% | |
| TATAATATACCGGAACACAC+AGG | + | Chr1:31656561-31656580 | None:intergenic | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | - | Chr1:31656837-31656856 | MsG0180002047.01.T01:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | Chr1:31656856-31656837 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | Chr1:31656836-31656855 | MsG0180002047.01.T01:intron | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | Chr1:31656855-31656836 | None:intergenic | 35.0% | |
| ! | TTTTCTGACAACCATTTCTC+CGG | - | Chr1:31656532-31656551 | MsG0180002047.01.T01:CDS | 35.0% |
| !!! | CATAATGTTTTTGGGCCATT+AGG | + | Chr1:31657637-31657656 | None:intergenic | 35.0% |
| !!! | CCTTTTTTGCCAATAATGAC+AGG | - | Chr1:31656896-31656915 | MsG0180002047.01.T01:intron | 35.0% |
| AAAGACTGCTCCAAGAAGAA+AGG | - | Chr1:31657531-31657550 | MsG0180002047.01.T01:CDS | 40.0% | |
| AAATTCTGACAGCCAATCTC+AGG | + | Chr1:31656514-31656533 | None:intergenic | 40.0% | |
| ACGATGACGCTACATCATTT+CGG | - | Chr1:31656378-31656397 | MsG0180002047.01.T01:CDS | 40.0% | |
| ATGGATTTCCCATATTGGTG+AGG | - | Chr1:31657219-31657238 | MsG0180002047.01.T01:intron | 40.0% | |
| CAATATGGGAAATCCATTCC+AGG | + | Chr1:31657216-31657235 | None:intergenic | 40.0% | |
| CAATCTCAGGAACGACATTA+GGG | + | Chr1:31656501-31656520 | None:intergenic | 40.0% | |
| CGTATAACATATACTCCCTC+CGG | - | Chr1:31656706-31656725 | MsG0180002047.01.T01:CDS | 40.0% | |
| GAATATAGGACTGTTTCGGT+TGG | + | Chr1:31657338-31657357 | None:intergenic | 40.0% | |
| TGTGATGTAATTACTCCCTC+CGG | + | Chr1:31656855-31656874 | None:intergenic | 40.0% | |
| TGTGGCGTAAGATATAAGTC+TGG | - | Chr1:31657664-31657683 | MsG0180002047.01.T01:CDS | 40.0% | |
| ! | AGTTCTGACTCAGAAGAAGA+CGG | + | Chr1:31657460-31657479 | None:intergenic | 40.0% |
| ! | ATTGTCGGTAGTGTTGTTGT+CGG | + | Chr1:31656315-31656334 | None:intergenic | 40.0% |
| ! | CTGGAATGGATTTCCCATAT+TGG | - | Chr1:31657214-31657233 | MsG0180002047.01.T01:intron | 40.0% |
| ! | CTTTCACGTGTACTGTTTTG+TGG | + | Chr1:31657031-31657050 | None:intergenic | 40.0% |
| ! | GGTGGTTTGGAAAATGTTGT+TGG | + | Chr1:31656285-31656304 | None:intergenic | 40.0% |
| AACGCTATTGACGACGGTAA+CGG | + | Chr1:31656452-31656471 | None:intergenic | 45.0% | |
| CCAAGAAGAAAGGACAGTGA+CGG | - | Chr1:31657541-31657560 | MsG0180002047.01.T01:CDS | 45.0% | |
| CCAATCTCAGGAACGACATT+AGG | + | Chr1:31656502-31656521 | None:intergenic | 45.0% | |
| CCTAATGTCGTTCCTGAGAT+TGG | - | Chr1:31656499-31656518 | MsG0180002047.01.T01:CDS | 45.0% | |
| CGACGTCATTGTTGAGCTTA+AGG | + | Chr1:31656358-31656377 | None:intergenic | 45.0% | |
| CGTCATTGTTGAGCTTAAGG+AGG | + | Chr1:31656355-31656374 | None:intergenic | 45.0% | |
| GTTAGCTCGTCATCATTGTC+CGG | - | Chr1:31656469-31656488 | MsG0180002047.01.T01:CDS | 45.0% | |
| TTAGCTCGTCATCATTGTCC+GGG | - | Chr1:31656470-31656489 | MsG0180002047.01.T01:CDS | 45.0% | |
| ! | AGTGTTGTTGTCGGAGGAAA+AGG | + | Chr1:31656306-31656325 | None:intergenic | 45.0% |
| ! | ATGATTTAGCGGACCTGGAA+TGG | - | Chr1:31657200-31657219 | MsG0180002047.01.T01:intron | 45.0% |
| !! | TGAGGAATCGTTTTCAAGCG+AGG | - | Chr1:31657237-31657256 | MsG0180002047.01.T01:intron | 45.0% |
| !!! | GGAAGTTTTGGTTCCAGCTA+AGG | - | Chr1:31657363-31657382 | MsG0180002047.01.T01:intron | 45.0% |
| ACAGAATGGGGCGCATTTCA+CGG | - | Chr1:31656948-31656967 | MsG0180002047.01.T01:intron | 50.0% | |
| AGAAGAAAGGACAGTGACGG+AGG | - | Chr1:31657544-31657563 | MsG0180002047.01.T01:CDS | 50.0% | |
| AGGACTGTTTCGGTTGGGTT+GGG | + | Chr1:31657332-31657351 | None:intergenic | 50.0% | |
| CCGTCACTGTCCTTTCTTCT+TGG | + | Chr1:31657544-31657563 | None:intergenic | 50.0% | |
| CGAGCTAACGCTATTGACGA+CGG | + | Chr1:31656458-31656477 | None:intergenic | 50.0% | |
| CTGCTTCCTTGGAACAGTGA+CGG | + | Chr1:31657509-31657528 | None:intergenic | 50.0% | |
| GCAACTGATATCGGGCATGA+AGG | - | Chr1:31657273-31657292 | MsG0180002047.01.T01:intron | 50.0% | |
| GTTGTTGTCGGAGGAAAAGG+TGG | + | Chr1:31656303-31656322 | None:intergenic | 50.0% | |
| TAGGACTGTTTCGGTTGGGT+TGG | + | Chr1:31657333-31657352 | None:intergenic | 50.0% | |
| TGACAGACAAGACGCCACAA+TGG | - | Chr1:31657602-31657621 | MsG0180002047.01.T01:CDS | 50.0% | |
| TGTCGGAGGAAAAGGTGGTT+TGG | + | Chr1:31656298-31656317 | None:intergenic | 50.0% | |
| TTCCTTGGAACAGTGACGGT+GGG | + | Chr1:31657505-31657524 | None:intergenic | 50.0% | |
| TTCGGACACCAACCTTGACT+CGG | - | Chr1:31656396-31656415 | MsG0180002047.01.T01:CDS | 50.0% | |
| ! | GAAGAAAGGACAGTGACGGA+GGG | - | Chr1:31657545-31657564 | MsG0180002047.01.T01:CDS | 50.0% |
| AACAGTGACGGTGGGTAAGG+TGG | + | Chr1:31657497-31657516 | None:intergenic | 55.0% | |
| AACGACATTAGGGTCGCACC+CGG | + | Chr1:31656491-31656510 | None:intergenic | 55.0% | |
| AAGACGCCACAATGGCGAAC+TGG | - | Chr1:31657610-31657629 | MsG0180002047.01.T01:CDS | 55.0% | |
| ACAGTGACGGTGGGTAAGGT+GGG | + | Chr1:31657496-31657515 | None:intergenic | 55.0% | |
| AGACGCCACAATGGCGAACT+GGG | - | Chr1:31657611-31657630 | MsG0180002047.01.T01:CDS | 55.0% | |
| CAATGGCGAACTGGGCCTAA+TGG | - | Chr1:31657619-31657638 | MsG0180002047.01.T01:CDS | 55.0% | |
| CACACAGGTCTCCGGAGAAA+TGG | + | Chr1:31656546-31656565 | None:intergenic | 55.0% | |
| CGTCACTGTTCCAAGGAAGC+AGG | - | Chr1:31657507-31657526 | MsG0180002047.01.T01:CDS | 55.0% | |
| CTTCCTTGGAACAGTGACGG+TGG | + | Chr1:31657506-31657525 | None:intergenic | 55.0% | |
| GCAGTCTTTGCCTGCTTCCT+TGG | + | Chr1:31657520-31657539 | None:intergenic | 55.0% | |
| GTAAGGTGGGGGTGGGAATA+AGG | + | Chr1:31657483-31657502 | None:intergenic | 55.0% | |
| TACCCACCGTCACTGTTCCA+AGG | - | Chr1:31657500-31657519 | MsG0180002047.01.T01:CDS | 55.0% | |
| TACCGGAACACACAGGTCTC+CGG | + | Chr1:31656554-31656573 | None:intergenic | 55.0% | |
| TGGAACAGTGACGGTGGGTA+AGG | + | Chr1:31657500-31657519 | None:intergenic | 55.0% | |
| TTAGGCCCAGTTCGCCATTG+TGG | + | Chr1:31657619-31657638 | None:intergenic | 55.0% | |
| ! | ATTGACGACGGTAACGGTGG+AGG | + | Chr1:31656446-31656465 | None:intergenic | 55.0% |
| ! | GCTATTGACGACGGTAACGG+TGG | + | Chr1:31656449-31656468 | None:intergenic | 55.0% |
| ! | GGAGGATGATTTAGCGGACC+TGG | - | Chr1:31657195-31657214 | MsG0180002047.01.T01:intron | 55.0% |
| ! | GTCGGTAGTGTTGTTGTCGG+AGG | + | Chr1:31656312-31656331 | None:intergenic | 55.0% |
| AGTGACGGTGGGTAAGGTGG+GGG | + | Chr1:31657494-31657513 | None:intergenic | 60.0% | |
| AGTTGCCTGTGGCCGAGTCA+AGG | + | Chr1:31656411-31656430 | None:intergenic | 60.0% | |
| CAGCTAAGGCCCGTAGCAAG+AGG | - | Chr1:31657377-31657396 | MsG0180002047.01.T01:intron | 60.0% | |
| CAGTGACGGTGGGTAAGGTG+GGG | + | Chr1:31657495-31657514 | None:intergenic | 60.0% | |
| CCCACGAGTCCTCTTGCTAC+GGG | + | Chr1:31657389-31657408 | None:intergenic | 60.0% | |
| CCCGTAGCAAGAGGACTCGT+GGG | - | Chr1:31657386-31657405 | MsG0180002047.01.T01:intron | 60.0% | |
| CTCCGGAGACCTGTGTGTTC+CGG | - | Chr1:31656549-31656568 | MsG0180002047.01.T01:CDS | 60.0% | |
| CTCTTGCTACGGGCCTTAGC+TGG | + | Chr1:31657379-31657398 | None:intergenic | 60.0% | |
| GAGGGTCAGGTGGAGATGGT+CGG | - | Chr1:31657563-31657582 | MsG0180002047.01.T01:CDS | 60.0% | |
| GCCCACGAGTCCTCTTGCTA+CGG | + | Chr1:31657390-31657409 | None:intergenic | 60.0% | |
| ! | AAGGACAGTGACGGAGGGTC+AGG | - | Chr1:31657550-31657569 | MsG0180002047.01.T01:CDS | 60.0% |
| ! | GGAGGCAGTTGAGTTGCCTG+TGG | + | Chr1:31656422-31656441 | None:intergenic | 60.0% |
| ! | GGGCATGAAGGTGCGAAACC+AGG | - | Chr1:31657285-31657304 | MsG0180002047.01.T01:intron | 60.0% |
| ! | GTGGAGATGGTCGGAGGTGT+CGG | - | Chr1:31657572-31657591 | MsG0180002047.01.T01:CDS | 60.0% |
| !! | ACCAACCTTGACTCGGCCAC+AGG | - | Chr1:31656403-31656422 | MsG0180002047.01.T01:CDS | 60.0% |
| !! | GGTTGGGTTGGGAAAGCTCG+CGG | + | Chr1:31657321-31657340 | None:intergenic | 60.0% |
| !! | GTTGGGTTGGGAAAGCTCGC+GGG | + | Chr1:31657320-31657339 | None:intergenic | 60.0% |
| !! | TTGGGTTGGGAAAGCTCGCG+GGG | + | Chr1:31657319-31657338 | None:intergenic | 60.0% |
| ACGCGAGCTCCAGTCGCAAG+GGG | + | Chr1:31657413-31657432 | None:intergenic | 65.0% | |
| ACGGTGGGTAAGGTGGGGGT+GGG | + | Chr1:31657490-31657509 | None:intergenic | 65.0% | |
| AGACGCGAGCTCCAGTCGCA+AGG | + | Chr1:31657415-31657434 | None:intergenic | 65.0% | |
| GACGCGAGCTCCAGTCGCAA+GGG | + | Chr1:31657414-31657433 | None:intergenic | 65.0% | |
| GACGGAGGGTCAGGTGGAGA+TGG | - | Chr1:31657559-31657578 | MsG0180002047.01.T01:CDS | 65.0% | |
| GCCCGTAGCAAGAGGACTCG+TGG | - | Chr1:31657385-31657404 | MsG0180002047.01.T01:intron | 65.0% | |
| GCCTGTGGCCGAGTCAAGGT+TGG | + | Chr1:31656407-31656426 | None:intergenic | 65.0% | |
| GCTCGCGGGGTTCTTCATCC+TGG | + | Chr1:31657306-31657325 | None:intergenic | 65.0% | |
| GGTCAGGTGGAGATGGTCGG+AGG | - | Chr1:31657566-31657585 | MsG0180002047.01.T01:CDS | 65.0% | |
| ! | GACAGTGACGGAGGGTCAGG+TGG | - | Chr1:31657553-31657572 | MsG0180002047.01.T01:CDS | 65.0% |
| ! | GACGACGGTAACGGTGGAGG+AGG | + | Chr1:31656443-31656462 | None:intergenic | 65.0% |
| ! | GACGGTAACGGTGGAGGAGG+AGG | + | Chr1:31656440-31656459 | None:intergenic | 65.0% |
| CGCGAGCTCCAGTCGCAAGG+GGG | + | Chr1:31657412-31657431 | None:intergenic | 70.0% | |
| GACGGTGGGTAAGGTGGGGG+TGG | + | Chr1:31657491-31657510 | None:intergenic | 70.0% | |
| CTCGTGGGCCCCCTTGCGAC+TGG | - | Chr1:31657401-31657420 | MsG0180002047.01.T01:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 31656269 | 31657690 | 31656269 | ID=MsG0180002047.01;Name=MsG0180002047.01 |
| Chr1 | mRNA | 31656269 | 31657690 | 31656269 | ID=MsG0180002047.01.T01;Parent=MsG0180002047.01;Name=MsG0180002047.01.T01;_AED=0.13;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|249 |
| Chr1 | exon | 31657436 | 31657690 | 31657436 | ID=MsG0180002047.01.T01:exon:28534;Parent=MsG0180002047.01.T01 |
| Chr1 | exon | 31656269 | 31656763 | 31656269 | ID=MsG0180002047.01.T01:exon:28535;Parent=MsG0180002047.01.T01 |
| Chr1 | CDS | 31657436 | 31657690 | 31657436 | ID=MsG0180002047.01.T01:cds;Parent=MsG0180002047.01.T01 |
| Chr1 | CDS | 31656269 | 31656763 | 31656269 | ID=MsG0180002047.01.T01:cds;Parent=MsG0180002047.01.T01 |
| Gene Sequence |
| Protein sequence |
