AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002358.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002358.01.T01 MTR_1g006650 94.767 344 14 2 1 340 1 344 0.0 650
MsG0180002358.01.T01 MTR_3g109760 55.247 324 116 8 19 340 22 318 1.71e-104 309
MsG0180002358.01.T01 MTR_8g013950 46.884 337 131 12 23 340 35 342 5.98e-78 242
MsG0180002358.01.T01 MTR_8g076340 47.317 205 90 5 96 300 102 288 1.78e-46 159
MsG0180002358.01.T01 MTR_4g071590 34.615 312 141 10 5 299 15 280 6.91e-43 150
MsG0180002358.01.T01 MTR_4g471590 34.615 312 141 10 5 299 15 280 6.91e-43 150
MsG0180002358.01.T01 MTR_6g032830 39.732 224 101 6 107 296 35 258 6.94e-41 144
MsG0180002358.01.T01 MTR_5g021340 44.156 231 95 7 94 300 150 370 3.83e-39 143
MsG0180002358.01.T01 MTR_1g094930 35.463 313 142 11 27 294 9 306 1.49e-37 137
MsG0180002358.01.T01 MTR_3g117380 37.209 215 117 3 87 300 102 299 3.12e-37 136
MsG0180002358.01.T01 MTR_1g046680 78.873 71 15 0 229 299 171 241 1.00e-34 127
MsG0180002358.01.T01 MTR_7g085410 39.370 254 110 10 73 294 11 252 1.04e-34 128
MsG0180002358.01.T01 MTR_5g007600 74.648 71 18 0 229 299 258 328 4.79e-33 125
MsG0180002358.01.T01 MTR_5g007600 39.234 209 94 4 101 300 43 227 6.00e-29 114
MsG0180002358.01.T01 MTR_1g094930 78.462 65 14 0 230 294 147 211 1.12e-32 122
MsG0180002358.01.T01 MTR_1g116010 55.963 109 43 2 209 316 142 246 6.45e-32 120
MsG0180002358.01.T01 MTR_2g094600 76.923 65 15 0 230 294 216 280 1.79e-31 120
MsG0180002358.01.T01 MTR_4g058910 73.134 67 18 0 230 296 314 380 2.99e-30 119
MsG0180002358.01.T01 MTR_7g446110 62.903 62 23 0 230 291 187 248 3.71e-21 91.3
MsG0180002358.01.T01 MTR_7g445950 32.124 193 90 6 99 291 30 181 3.35e-19 84.3
MsG0180002358.01.T01 MTR_7g446070 33.495 206 105 8 88 291 18 193 6.52e-19 84.0
MsG0180002358.01.T01 MTR_7g445980 62.712 59 21 1 234 291 37 95 1.48e-18 80.1
MsG0180002358.01.T01 MTR_7g112330 70.588 34 10 0 232 265 24 57 2.82e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002358.01.T01 AT5G25830 56.981 265 97 7 93 340 67 331 6.51e-92 278
MsG0180002358.01.T01 AT4G32890 43.881 335 131 9 21 340 16 308 5.48e-80 246
MsG0180002358.01.T01 AT3G60530 48.309 207 63 6 93 298 63 226 3.73e-49 165
MsG0180002358.01.T01 AT2G45050 43.277 238 79 7 89 310 60 257 8.65e-49 165
MsG0180002358.01.T01 AT5G66320 38.519 270 116 8 69 312 86 331 3.70e-39 142
MsG0180002358.01.T01 AT5G66320 38.519 270 116 8 69 312 86 331 3.70e-39 142
MsG0180002358.01.T01 AT4G36240 37.544 285 106 9 22 297 10 231 6.18e-39 138
MsG0180002358.01.T01 AT4G34680 38.710 217 82 5 90 299 77 249 1.43e-36 133
MsG0180002358.01.T01 AT4G34680 38.710 217 82 5 90 299 77 249 1.43e-36 133
MsG0180002358.01.T01 AT3G51080 34.304 309 157 10 6 298 11 289 3.17e-34 128
MsG0180002358.01.T01 AT3G24050 74.286 70 18 0 229 298 193 262 2.63e-33 124
MsG0180002358.01.T01 AT1G08010 65.476 84 23 1 225 302 215 298 3.82e-33 125
MsG0180002358.01.T01 AT1G08010 65.476 84 23 1 225 302 215 298 3.82e-33 125
MsG0180002358.01.T01 AT1G08010 65.476 84 23 1 225 302 215 298 3.82e-33 125
MsG0180002358.01.T01 AT1G08000 70.833 72 21 0 225 296 213 284 3.59e-31 120
MsG0180002358.01.T01 AT1G08000 70.833 72 21 0 225 296 213 284 3.59e-31 120
MsG0180002358.01.T01 AT3G54810 62.963 81 30 0 230 310 229 309 6.37e-31 119
MsG0180002358.01.T01 AT3G54810 62.963 81 30 0 230 310 229 309 6.37e-31 119
MsG0180002358.01.T01 AT2G28340 69.841 63 19 0 232 294 193 255 1.35e-26 107
MsG0180002358.01.T01 AT3G45170 64.179 67 24 0 232 298 117 183 2.68e-26 104

Find 117 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTCACTGTCCTTTCTTCT+TGG 0.090798 1:+37304040 None:intergenic
CCAATATCAGGAACGACATT+AGG 0.287162 1:+37304907 None:intergenic
GCAGTCTTTGCCTGCTTCCT+TGG 0.291400 1:+37304064 None:intergenic
TACTCTGATGTTGTAAAATC+TGG 0.292416 1:+37303762 None:intergenic
TATATTCAACAAGGAAGTTT+TGG 0.298704 1:-37304230 MsG0180002358.01.T01:CDS
CTAGCTGCAGGCCTGTATTC+AGG 0.333508 1:+37303884 None:intergenic
CTCCGGAGACCTGTGTGTTC+CGG 0.345236 1:-37304857 MsG0180002358.01.T01:intron
CAAAAGATGCAACTGATATC+AGG 0.358334 1:-37304316 MsG0180002358.01.T01:CDS
CCTAATGTCGTTCCTGATAT+TGG 0.361673 1:-37304907 MsG0180002358.01.T01:CDS
AAAACTTCCTTGTTGAATAT+AGG 0.362486 1:+37304232 None:intergenic
GAAATAGGAGGATGCTTTAC+GGG 0.365602 1:-37304392 MsG0180002358.01.T01:intron
CGACGTCATTGTTGAGGTTA+AGG 0.370723 1:+37305052 None:intergenic
TGTTGAATATAGGACTGTTT+CGG 0.382615 1:+37304242 None:intergenic
AAGACACCACAATGGCGAAC+CGG 0.386976 1:-37303971 MsG0180002358.01.T01:CDS
ACGATGCGAGTTGGAGTGTT+TGG 0.387998 1:+37303844 None:intergenic
AAATTCTGACAGCCAATATC+AGG 0.389939 1:+37304895 None:intergenic
TGAAATAGGAGGATGCTTTA+CGG 0.392306 1:-37304393 MsG0180002358.01.T01:intron
TTACTTGATTCACCAACATA+TGG 0.405233 1:-37303711 MsG0180002358.01.T01:CDS
AGGACTGTTTCGGTTGGGTT+GGG 0.406165 1:+37304252 None:intergenic
GTTGGGTTGGGAAAGCTCAC+GGG 0.412320 1:+37304264 None:intergenic
CAATGGCGAACCGGGCCTAA+TGG 0.414512 1:-37303962 MsG0180002358.01.T01:CDS
CACACAGGTCTCCGGAGAAA+TGG 0.416213 1:+37304863 None:intergenic
CACGGTAACGGTGGAGGAAG+AGG 0.434827 1:+37304969 None:intergenic
CAATATCAGGAACGACATTA+GGG 0.440367 1:+37304908 None:intergenic
CTCTTGCTACGGGCCTTAGC+TGG 0.442400 1:+37304205 None:intergenic
TGTCGGAGGAAAAGGTGGTT+TGG 0.443866 1:+37305109 None:intergenic
GGTTGGGTTGGGAAAGCTCA+CGG 0.448750 1:+37304263 None:intergenic
TACATCATCTGCCTAAAATC+AGG 0.450652 1:+37303686 None:intergenic
GCTCACGGGGTTCTTCGTCC+TGG 0.451765 1:+37304278 None:intergenic
AATATAGGACTGTTTCGGTT+GGG 0.459476 1:+37304247 None:intergenic
TAGGACTGTTTCGGTTGGGT+TGG 0.462649 1:+37304251 None:intergenic
AGTGTTGTTGTCGGAGGAAA+AGG 0.462952 1:+37305101 None:intergenic
AAGGACAGTGACGGAGGGTC+AGG 0.466229 1:-37304031 MsG0180002358.01.T01:CDS
GAGGCAGAAGGAAATGTTGC+GGG 0.466463 1:-37303804 MsG0180002358.01.T01:CDS
TACTTGATTCACCAACATAT+GGG 0.466490 1:-37303710 MsG0180002358.01.T01:CDS
CAACATTGGAAAGCCATTCC+AGG 0.469957 1:+37304368 None:intergenic
GTCGATTGGTGCCTGAATAC+AGG 0.470023 1:-37303895 MsG0180002358.01.T01:CDS
AGACACCACAATGGCGAACC+GGG 0.471491 1:-37303970 MsG0180002358.01.T01:CDS
GCCCACGAGTCCTCTTGCTA+CGG 0.473059 1:+37304194 None:intergenic
GGAGGATGCTTTACGGGACC+TGG 0.481852 1:-37304386 MsG0180002358.01.T01:CDS
GAATATAGGACTGTTTCGGT+TGG 0.481982 1:+37304246 None:intergenic
GTTAGCTCGTCATCATTGTC+CGG 0.486841 1:-37304937 MsG0180002358.01.T01:CDS
ATGCTTTACGGGACCTGGAA+TGG 0.494601 1:-37304381 MsG0180002358.01.T01:CDS
GACGTGAGCTCCAGTCGCAA+GGG 0.498267 1:+37304170 None:intergenic
AATCAAGTAATCATCATTGT+TGG 0.499207 1:+37303724 None:intergenic
TGTTTGGTCAGCACAAATGT+AGG 0.504596 1:+37303860 None:intergenic
ATCGTAAAGTGTTGGAGCTA+CGG 0.505579 1:-37303826 MsG0180002358.01.T01:CDS
AAGGTTGGTGTCGGAAATGA+TGG 0.507635 1:+37305017 None:intergenic
ACAGTGATGGTAGGTAAGGC+GGG 0.516162 1:+37304088 None:intergenic
GGTGGTTTGGAAAATGTTGT+TGG 0.523159 1:+37305122 None:intergenic
TACCGACAATTTCATTGTTG+AGG 0.524862 1:-37305079 MsG0180002358.01.T01:CDS
AAACGATTCCTCAACAACAT+TGG 0.525151 1:+37304354 None:intergenic
TACCGGAACACACAGGTCTC+CGG 0.525459 1:+37304855 None:intergenic
ATTGACCACGGTAACGGTGG+AGG 0.527850 1:+37304963 None:intergenic
GCCCGTAGCAAGAGGACTCG+TGG 0.533598 1:-37304196 MsG0180002358.01.T01:CDS
AAGATACAAGTCGGGTCGAT+TGG 0.534399 1:-37303909 MsG0180002358.01.T01:CDS
TTCCGACACCAACCTTGACT+CGG 0.534554 1:-37305010 MsG0180002358.01.T01:CDS
AGGCATGAAGGTGCGAAACC+AGG 0.535516 1:-37304296 MsG0180002358.01.T01:CDS
CCCACGAGTCCTCTTGCTAC+GGG 0.537511 1:+37304195 None:intergenic
GACGGAGGGTCAGGTGGAGA+TGG 0.539597 1:-37304022 MsG0180002358.01.T01:CDS
GTTGTTGTCGGAGGAAAAGG+TGG 0.541025 1:+37305104 None:intergenic
GAGGGTCAGGTGGAGATGGT+CGG 0.544742 1:-37304018 MsG0180002358.01.T01:CDS
CTGCTTCCTTGGAACAGTGA+TGG 0.548423 1:+37304075 None:intergenic
CAACACTTTACGATGCGAGT+TGG 0.550252 1:+37303835 None:intergenic
TGGAACAGTGATGGTAGGTA+AGG 0.550597 1:+37304084 None:intergenic
CATCACTGTTCCAAGGAAGC+AGG 0.554828 1:-37304074 MsG0180002358.01.T01:CDS
AAAGACTGCTCCAAGAAGAA+AGG 0.555772 1:-37304050 MsG0180002358.01.T01:CDS
AACGCTATTGACCACGGTAA+CGG 0.557909 1:+37304957 None:intergenic
GACAGTGACGGAGGGTCAGG+TGG 0.558691 1:-37304028 MsG0180002358.01.T01:CDS
ACAAATGTAGGGCTAGCTGC+AGG 0.560737 1:+37303872 None:intergenic
AGACGTGAGCTCCAGTCGCA+AGG 0.560751 1:+37304169 None:intergenic
GTCCTCAACAATGAAATTGT+CGG 0.566137 1:+37305077 None:intergenic
AACAGTGATGGTAGGTAAGG+CGG 0.571647 1:+37304087 None:intergenic
TAAAATCAGGTCCCATATGT+TGG 0.573858 1:+37303699 None:intergenic
GTTTGGTCAGCACAAATGTA+GGG 0.574012 1:+37303861 None:intergenic
CCCGTAGCAAGAGGACTCGT+GGG 0.574146 1:-37304195 MsG0180002358.01.T01:CDS
TTGGGTTGGGAAAGCTCACG+GGG 0.578980 1:+37304265 None:intergenic
CAGCTAAGGCCCGTAGCAAG+AGG 0.579929 1:-37304204 MsG0180002358.01.T01:CDS
GGCCGAGTCAAGGTTGGTGT+CGG 0.584263 1:+37305008 None:intergenic
TTAGGCCCGGTTCGCCATTG+TGG 0.587065 1:+37303965 None:intergenic
TTAGCTCGTCATCATTGTCC+GGG 0.587117 1:-37304936 MsG0180002358.01.T01:CDS
GCAACTGATATCAGGCATGA+AGG 0.589173 1:-37304308 MsG0180002358.01.T01:CDS
TTGTGGTGTAAGATACAAGT+CGG 0.589234 1:-37303918 MsG0180002358.01.T01:CDS
AGTTGACTGTGGCCGAGTCA+AGG 0.589310 1:+37304998 None:intergenic
ATTCCCTACGTAGGAATGGA+AGG 0.590186 1:-37305150 None:intergenic
ATTGTCGGTAGTGTTGTTGT+CGG 0.590207 1:+37305092 None:intergenic
GGTCAGGTGGAGATGGTCGG+AGG 0.590443 1:-37304015 MsG0180002358.01.T01:CDS
GTCGGTAGTGTTGTTGTCGG+AGG 0.590547 1:+37305095 None:intergenic
TACCTACCATCACTGTTCCA+AGG 0.594004 1:-37304081 MsG0180002358.01.T01:CDS
CGTCGTCGACGTCATTGTTG+AGG 0.596242 1:+37305046 None:intergenic
ATGGCTTTCCAATGTTGTTG+AGG 0.597478 1:-37304362 MsG0180002358.01.T01:CDS
AACGACATTAGGGTCGCACC+CGG 0.603894 1:+37304918 None:intergenic
CAACTCGCATCGTAAAGTGT+TGG 0.604228 1:-37303834 MsG0180002358.01.T01:CDS
CTCTTCCTCCACCGTTACCG+TGG 0.606184 1:-37304968 MsG0180002358.01.T01:CDS
TGTGGTGTAAGATACAAGTC+GGG 0.608929 1:-37303917 MsG0180002358.01.T01:CDS
GTTGGAGCTACGGAGGCAGA+AGG 0.611025 1:-37303816 MsG0180002358.01.T01:CDS
CGTCATTGTTGAGGTTAAGG+AGG 0.612987 1:+37305055 None:intergenic
GACTGTGGCCGAGTCAAGGT+TGG 0.614521 1:+37305002 None:intergenic
ACGTGAGCTCCAGTCGCAAG+GGG 0.619626 1:+37304171 None:intergenic
GCTATTGACCACGGTAACGG+TGG 0.631846 1:+37304960 None:intergenic
GAAGAAAGGACAGTGACGGA+GGG 0.637953 1:-37304036 MsG0180002358.01.T01:CDS
AAAACATTATGCAACGCTTG+TGG 0.638941 1:-37303935 MsG0180002358.01.T01:CDS
CCAAGAAGAAAGGACAGTGA+CGG 0.640630 1:-37304040 MsG0180002358.01.T01:CDS
AGAAGAAAGGACAGTGACGG+AGG 0.643844 1:-37304037 MsG0180002358.01.T01:CDS
TTCCTTGGAACAGTGATGGT+AGG 0.661750 1:+37304079 None:intergenic
AGTGATGGTAGGTAAGGCGG+GGG 0.663791 1:+37304090 None:intergenic
GTAAAGTGTTGGAGCTACGG+AGG 0.667005 1:-37303823 MsG0180002358.01.T01:CDS
CAGTGATGGTAGGTAAGGCG+GGG 0.673174 1:+37304089 None:intergenic
GGAGGCAGAAGGAAATGTTG+CGG 0.675658 1:-37303805 MsG0180002358.01.T01:CDS
AGTTCTGACTCAGAAGAAGA+CGG 0.679246 1:+37304124 None:intergenic
GGTAACGGTGGAGGAAGAGG+CGG 0.684503 1:+37304972 None:intergenic
TATAATATACCGGAACACAC+AGG 0.691414 1:+37304848 None:intergenic
AAACAGTCCTATATTCAACA+AGG 0.707758 1:-37304239 MsG0180002358.01.T01:CDS
CGAGCTAACGCTATTGACCA+CGG 0.719172 1:+37304951 None:intergenic
CGTGAGCTCCAGTCGCAAGG+GGG 0.723454 1:+37304172 None:intergenic
TGACAGACAAGACACCACAA+TGG 0.724676 1:-37303979 MsG0180002358.01.T01:CDS
AGAGGCGGTTGAGTTGACTG+TGG 0.744548 1:+37304987 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATACACATATAATATAC+CGG + Chr1:37303985-37304004 None:intergenic 20.0%
!!! TTTGTGTTGAAATTTGAAAT+AGG - Chr1:37304413-37304432 MsG0180002358.01.T01:intron 20.0%
!!! TTTTGTGATACTCAATAATT+TGG + Chr1:37304284-37304303 None:intergenic 20.0%
! AAAACTTCCTTGTTGAATAT+AGG + Chr1:37304591-37304610 None:intergenic 25.0%
! AATCAAGTAATCATCATTGT+TGG + Chr1:37305099-37305118 None:intergenic 25.0%
! CTGAAATTATTGGCAAAAAA+GGG + Chr1:37304166-37304185 None:intergenic 25.0%
!! TATATTCAACAAGGAAGTTT+TGG - Chr1:37304590-37304609 MsG0180002358.01.T01:intron 25.0%
!!! GTTTTTTCTCCTGAAATTAT+TGG + Chr1:37304176-37304195 None:intergenic 25.0%
AAACAGTCCTATATTCAACA+AGG - Chr1:37304581-37304600 MsG0180002358.01.T01:intron 30.0%
CCTGAAATTATTGGCAAAAA+AGG + Chr1:37304167-37304186 None:intergenic 30.0%
TACTCTGATGTTGTAAAATC+TGG + Chr1:37305061-37305080 None:intergenic 30.0%
TACTTGATTCACCAACATAT+GGG - Chr1:37305110-37305129 MsG0180002358.01.T01:CDS 30.0%
TAGGCTAAATACAACAGAAT+GGG - Chr1:37304203-37304222 MsG0180002358.01.T01:CDS 30.0%
TGTTGAATATAGGACTGTTT+CGG + Chr1:37304581-37304600 None:intergenic 30.0%
TTACTTGATTCACCAACATA+TGG - Chr1:37305109-37305128 MsG0180002358.01.T01:CDS 30.0%
! GCATGAGTTAGAAATTTTCA+TGG + Chr1:37304101-37304120 None:intergenic 30.0%
! GTGTTGAAATTTGAAATAGG+AGG - Chr1:37304416-37304435 MsG0180002358.01.T01:intron 30.0%
! TGTTTCAAGAGCATATATAG+AGG - Chr1:37304379-37304398 MsG0180002358.01.T01:CDS 30.0%
!!! CCTTTTTTGCCAATAATTTC+AGG - Chr1:37304164-37304183 MsG0180002358.01.T01:CDS 30.0%
!!! GTTGTAAAATCTGGTTTTGT+TGG + Chr1:37305052-37305071 None:intergenic 30.0%
AAAACATTATGCAACGCTTG+TGG - Chr1:37304885-37304904 MsG0180002358.01.T01:CDS 35.0%
AAACGATTCCTCAACAACAT+TGG + Chr1:37304469-37304488 None:intergenic 35.0%
AAATTCTGACAGCCAATATC+AGG + Chr1:37303928-37303947 None:intergenic 35.0%
AATATAGGACTGTTTCGGTT+GGG + Chr1:37304576-37304595 None:intergenic 35.0%
AGGAGAAAAAACAACTAGCT+AGG - Chr1:37304184-37304203 MsG0180002358.01.T01:CDS 35.0%
AGGCTAAATACAACAGAATG+GGG - Chr1:37304204-37304223 MsG0180002358.01.T01:CDS 35.0%
CAAAAGATGCAACTGATATC+AGG - Chr1:37304504-37304523 MsG0180002358.01.T01:intron 35.0%
CAATATCAGGAACGACATTA+GGG + Chr1:37303915-37303934 None:intergenic 35.0%
CTAGGCTAAATACAACAGAA+TGG - Chr1:37304202-37304221 MsG0180002358.01.T01:CDS 35.0%
GTCCTCAACAATGAAATTGT+CGG + Chr1:37303746-37303765 None:intergenic 35.0%
TAAAATCAGGTCCCATATGT+TGG + Chr1:37305124-37305143 None:intergenic 35.0%
TACATCATCTGCCTAAAATC+AGG + Chr1:37305137-37305156 None:intergenic 35.0%
TACCGACAATTTCATTGTTG+AGG - Chr1:37303741-37303760 MsG0180002358.01.T01:CDS 35.0%
TATAATATACCGGAACACAC+AGG + Chr1:37303975-37303994 None:intergenic 35.0%
TGAAATAGGAGGATGCTTTA+CGG - Chr1:37304427-37304446 MsG0180002358.01.T01:intron 35.0%
TTGTGGTGTAAGATACAAGT+CGG - Chr1:37304902-37304921 MsG0180002358.01.T01:CDS 35.0%
! AACATATGGGACCTGATTTT+AGG - Chr1:37305123-37305142 MsG0180002358.01.T01:CDS 35.0%
!! AAGCGTTGCATAATGTTTTC+GGG + Chr1:37304884-37304903 None:intergenic 35.0%
!! CAAGCGTTGCATAATGTTTT+CGG + Chr1:37304885-37304904 None:intergenic 35.0%
!!! AAATCTGGTTTTGTTGGTGT+TGG + Chr1:37305046-37305065 None:intergenic 35.0%
AAAGACTGCTCCAAGAAGAA+AGG - Chr1:37304770-37304789 MsG0180002358.01.T01:intron 40.0%
ATGGCTTTCCAATGTTGTTG+AGG - Chr1:37304458-37304477 MsG0180002358.01.T01:intron 40.0%
CCAATATCAGGAACGACATT+AGG + Chr1:37303916-37303935 None:intergenic 40.0%
CCTAATGTCGTTCCTGATAT+TGG - Chr1:37303913-37303932 MsG0180002358.01.T01:CDS 40.0%
GAAATAGGAGGATGCTTTAC+GGG - Chr1:37304428-37304447 MsG0180002358.01.T01:intron 40.0%
GAATATAGGACTGTTTCGGT+TGG + Chr1:37304577-37304596 None:intergenic 40.0%
GTTTGGTCAGCACAAATGTA+GGG + Chr1:37304962-37304981 None:intergenic 40.0%
TGTGGTGTAAGATACAAGTC+GGG - Chr1:37304903-37304922 MsG0180002358.01.T01:CDS 40.0%
TGTTTGGTCAGCACAAATGT+AGG + Chr1:37304963-37304982 None:intergenic 40.0%
! AGTTCTGACTCAGAAGAAGA+CGG + Chr1:37304699-37304718 None:intergenic 40.0%
! ATTGTCGGTAGTGTTGTTGT+CGG + Chr1:37303731-37303750 None:intergenic 40.0%
! GGTGGTTTGGAAAATGTTGT+TGG + Chr1:37303701-37303720 None:intergenic 40.0%
! TTTTCTGACAGCCATTTCTC+CGG - Chr1:37303946-37303965 MsG0180002358.01.T01:CDS 40.0%
!! ATCGTAAAGTGTTGGAGCTA+CGG - Chr1:37304994-37305013 MsG0180002358.01.T01:CDS 40.0%
!! CATAATGTTTTCGGGCCATT+AGG + Chr1:37304876-37304895 None:intergenic 40.0%
AACAGTGATGGTAGGTAAGG+CGG + Chr1:37304736-37304755 None:intergenic 45.0%
AACGCTATTGACCACGGTAA+CGG + Chr1:37303866-37303885 None:intergenic 45.0%
AAGATACAAGTCGGGTCGAT+TGG - Chr1:37304911-37304930 MsG0180002358.01.T01:CDS 45.0%
ACAGAATGGGGCACATTTCA+CGG - Chr1:37304216-37304235 MsG0180002358.01.T01:CDS 45.0%
CAACACTTTACGATGCGAGT+TGG + Chr1:37304988-37305007 None:intergenic 45.0%
CAACATTGGAAAGCCATTCC+AGG + Chr1:37304455-37304474 None:intergenic 45.0%
CAACTCGCATCGTAAAGTGT+TGG - Chr1:37304986-37305005 MsG0180002358.01.T01:CDS 45.0%
CCAAGAAGAAAGGACAGTGA+CGG - Chr1:37304780-37304799 MsG0180002358.01.T01:intron 45.0%
CGACGTCATTGTTGAGGTTA+AGG + Chr1:37303771-37303790 None:intergenic 45.0%
CGTCATTGTTGAGGTTAAGG+AGG + Chr1:37303768-37303787 None:intergenic 45.0%
GCAACTGATATCAGGCATGA+AGG - Chr1:37304512-37304531 MsG0180002358.01.T01:intron 45.0%
GTTAGCTCGTCATCATTGTC+CGG - Chr1:37303883-37303902 MsG0180002358.01.T01:CDS 45.0%
TACCTACCATCACTGTTCCA+AGG - Chr1:37304739-37304758 MsG0180002358.01.T01:intron 45.0%
TGACAGACAAGACACCACAA+TGG - Chr1:37304841-37304860 MsG0180002358.01.T01:intron 45.0%
TGGAACAGTGATGGTAGGTA+AGG + Chr1:37304739-37304758 None:intergenic 45.0%
TTAGCTCGTCATCATTGTCC+GGG - Chr1:37303884-37303903 MsG0180002358.01.T01:CDS 45.0%
TTCCTTGGAACAGTGATGGT+AGG + Chr1:37304744-37304763 None:intergenic 45.0%
! AGTGTTGTTGTCGGAGGAAA+AGG + Chr1:37303722-37303741 None:intergenic 45.0%
!! AAGGTTGGTGTCGGAAATGA+TGG + Chr1:37303806-37303825 None:intergenic 45.0%
!! TGAGGAATCGTTTTCAAGCG+AGG - Chr1:37304476-37304495 MsG0180002358.01.T01:intron 45.0%
!!! GGAAGTTTTGGTTCCAGCTA+AGG - Chr1:37304602-37304621 MsG0180002358.01.T01:intron 45.0%
AAGACACCACAATGGCGAAC+CGG - Chr1:37304849-37304868 MsG0180002358.01.T01:intron 50.0%
ACAGTGATGGTAGGTAAGGC+GGG + Chr1:37304735-37304754 None:intergenic 50.0%
AGAAGAAAGGACAGTGACGG+AGG - Chr1:37304783-37304802 MsG0180002358.01.T01:intron 50.0%
AGGACTGTTTCGGTTGGGTT+GGG + Chr1:37304571-37304590 None:intergenic 50.0%
ATGCTTTACGGGACCTGGAA+TGG - Chr1:37304439-37304458 MsG0180002358.01.T01:intron 50.0%
CATCACTGTTCCAAGGAAGC+AGG - Chr1:37304746-37304765 MsG0180002358.01.T01:intron 50.0%
CCGTCACTGTCCTTTCTTCT+TGG + Chr1:37304783-37304802 None:intergenic 50.0%
CGAGCTAACGCTATTGACCA+CGG + Chr1:37303872-37303891 None:intergenic 50.0%
CTGCTTCCTTGGAACAGTGA+TGG + Chr1:37304748-37304767 None:intergenic 50.0%
GAGGCAGAAGGAAATGTTGC+GGG - Chr1:37305016-37305035 MsG0180002358.01.T01:CDS 50.0%
GGAGGCAGAAGGAAATGTTG+CGG - Chr1:37305015-37305034 MsG0180002358.01.T01:CDS 50.0%
GTTGTTGTCGGAGGAAAAGG+TGG + Chr1:37303719-37303738 None:intergenic 50.0%
TAGGACTGTTTCGGTTGGGT+TGG + Chr1:37304572-37304591 None:intergenic 50.0%
TGTCGGAGGAAAAGGTGGTT+TGG + Chr1:37303714-37303733 None:intergenic 50.0%
TTCCGACACCAACCTTGACT+CGG - Chr1:37303810-37303829 MsG0180002358.01.T01:CDS 50.0%
! ACGATGCGAGTTGGAGTGTT+TGG + Chr1:37304979-37304998 None:intergenic 50.0%
! GAAGAAAGGACAGTGACGGA+GGG - Chr1:37304784-37304803 MsG0180002358.01.T01:intron 50.0%
! GTCGATTGGTGCCTGAATAC+AGG - Chr1:37304925-37304944 MsG0180002358.01.T01:CDS 50.0%
!! ACAAATGTAGGGCTAGCTGC+AGG + Chr1:37304951-37304970 None:intergenic 50.0%
!! GTAAAGTGTTGGAGCTACGG+AGG - Chr1:37304997-37305016 MsG0180002358.01.T01:CDS 50.0%
AACGACATTAGGGTCGCACC+CGG + Chr1:37303905-37303924 None:intergenic 55.0%
AGACACCACAATGGCGAACC+GGG - Chr1:37304850-37304869 MsG0180002358.01.T01:intron 55.0%
AGTGATGGTAGGTAAGGCGG+GGG + Chr1:37304733-37304752 None:intergenic 55.0%
AGTTGACTGTGGCCGAGTCA+AGG + Chr1:37303825-37303844 None:intergenic 55.0%
CACACAGGTCTCCGGAGAAA+TGG + Chr1:37303960-37303979 None:intergenic 55.0%
CAGTGATGGTAGGTAAGGCG+GGG + Chr1:37304734-37304753 None:intergenic 55.0%
CGTCGTCGACGTCATTGTTG+AGG + Chr1:37303777-37303796 None:intergenic 55.0%
CTAGCTGCAGGCCTGTATTC+AGG + Chr1:37304939-37304958 None:intergenic 55.0%
GCAGTCTTTGCCTGCTTCCT+TGG + Chr1:37304759-37304778 None:intergenic 55.0%
TACCGGAACACACAGGTCTC+CGG + Chr1:37303968-37303987 None:intergenic 55.0%
! AGGCATGAAGGTGCGAAACC+AGG - Chr1:37304524-37304543 MsG0180002358.01.T01:intron 55.0%
! ATTGACCACGGTAACGGTGG+AGG + Chr1:37303860-37303879 None:intergenic 55.0%
! GCTATTGACCACGGTAACGG+TGG + Chr1:37303863-37303882 None:intergenic 55.0%
! GTCGGTAGTGTTGTTGTCGG+AGG + Chr1:37303728-37303747 None:intergenic 55.0%
!! AGAGGCGGTTGAGTTGACTG+TGG + Chr1:37303836-37303855 None:intergenic 55.0%
!! GGTTGGGTTGGGAAAGCTCA+CGG + Chr1:37304560-37304579 None:intergenic 55.0%
!! GTTGGGTTGGGAAAGCTCAC+GGG + Chr1:37304559-37304578 None:intergenic 55.0%
!! TGTTTTCGGGCCATTAGGCC+CGG + Chr1:37304871-37304890 None:intergenic 55.0%
!! TTGGGTTGGGAAAGCTCACG+GGG + Chr1:37304558-37304577 None:intergenic 55.0%
ACGTGAGCTCCAGTCGCAAG+GGG + Chr1:37304652-37304671 None:intergenic 60.0%
AGACGTGAGCTCCAGTCGCA+AGG + Chr1:37304654-37304673 None:intergenic 60.0%
ATGGTAGGTAAGGCGGGGGT+AGG + Chr1:37304729-37304748 None:intergenic 60.0%
CAATGGCGAACCGGGCCTAA+TGG - Chr1:37304858-37304877 MsG0180002358.01.T01:CDS 60.0%
CAGCTAAGGCCCGTAGCAAG+AGG - Chr1:37304616-37304635 MsG0180002358.01.T01:intron 60.0%
CCCACGAGTCCTCTTGCTAC+GGG + Chr1:37304628-37304647 None:intergenic 60.0%
CCCGTAGCAAGAGGACTCGT+GGG - Chr1:37304625-37304644 MsG0180002358.01.T01:intron 60.0%
CTCCGGAGACCTGTGTGTTC+CGG - Chr1:37303963-37303982 MsG0180002358.01.T01:CDS 60.0%
CTCTTCCTCCACCGTTACCG+TGG - Chr1:37303852-37303871 MsG0180002358.01.T01:CDS 60.0%
CTCTTGCTACGGGCCTTAGC+TGG + Chr1:37304618-37304637 None:intergenic 60.0%
GACGTGAGCTCCAGTCGCAA+GGG + Chr1:37304653-37304672 None:intergenic 60.0%
GACTGTGGCCGAGTCAAGGT+TGG + Chr1:37303821-37303840 None:intergenic 60.0%
GAGGGTCAGGTGGAGATGGT+CGG - Chr1:37304802-37304821 MsG0180002358.01.T01:intron 60.0%
GCCCACGAGTCCTCTTGCTA+CGG + Chr1:37304629-37304648 None:intergenic 60.0%
GGAGGATGCTTTACGGGACC+TGG - Chr1:37304434-37304453 MsG0180002358.01.T01:intron 60.0%
GTTGGAGCTACGGAGGCAGA+AGG - Chr1:37305004-37305023 MsG0180002358.01.T01:CDS 60.0%
! AAGGACAGTGACGGAGGGTC+AGG - Chr1:37304789-37304808 MsG0180002358.01.T01:intron 60.0%
! CACGGTAACGGTGGAGGAAG+AGG + Chr1:37303854-37303873 None:intergenic 60.0%
! GGTAACGGTGGAGGAAGAGG+CGG + Chr1:37303851-37303870 None:intergenic 60.0%
! TTAGGCCCGGTTCGCCATTG+TGG + Chr1:37304858-37304877 None:intergenic 60.0%
!! GGCCGAGTCAAGGTTGGTGT+CGG + Chr1:37303815-37303834 None:intergenic 60.0%
CGTGAGCTCCAGTCGCAAGG+GGG + Chr1:37304651-37304670 None:intergenic 65.0%
GACGGAGGGTCAGGTGGAGA+TGG - Chr1:37304798-37304817 MsG0180002358.01.T01:intron 65.0%
GCCCGTAGCAAGAGGACTCG+TGG - Chr1:37304624-37304643 MsG0180002358.01.T01:intron 65.0%
GCTCACGGGGTTCTTCGTCC+TGG + Chr1:37304545-37304564 None:intergenic 65.0%
GGTCAGGTGGAGATGGTCGG+AGG - Chr1:37304805-37304824 MsG0180002358.01.T01:intron 65.0%
! GACAGTGACGGAGGGTCAGG+TGG - Chr1:37304792-37304811 MsG0180002358.01.T01:intron 65.0%
CTCGTGGGCCCCCTTGCGAC+TGG - Chr1:37304640-37304659 MsG0180002358.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 37303685 37305157 37303685 ID=MsG0180002358.01;Name=MsG0180002358.01
Chr1 mRNA 37303685 37305157 37303685 ID=MsG0180002358.01.T01;Parent=MsG0180002358.01;Name=MsG0180002358.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|2|0|340
Chr1 exon 37304858 37305157 37304858 ID=MsG0180002358.01.T01:exon:24427;Parent=MsG0180002358.01.T01
Chr1 exon 37303685 37304407 37303685 ID=MsG0180002358.01.T01:exon:24428;Parent=MsG0180002358.01.T01
Chr1 CDS 37304858 37305157 37304858 ID=MsG0180002358.01.T01:cds;Parent=MsG0180002358.01.T01
Chr1 CDS 37303685 37304407 37303685 ID=MsG0180002358.01.T01:cds;Parent=MsG0180002358.01.T01
Gene Sequence

>MsG0180002358.01.T01

ATGGAAGGCACGACCAACAACATTTTCCAAACCACCTTTTCCTCCGACAACAACACTACCGACAATTTCATTGTTGAGGACCTCCTTAACCTCAACAATGACGTCGACGACGACGCTACCATCATTTCCGACACCAACCTTGACTCGGCCACAGTCAACTCAACCGCCTCTTCCTCCACCGTTACCGTGGTCAATAGCGTTAGCTCGTCATCATTGTCCGGGTGCGACCCTAATGTCGTTCCTGATATTGGCTGTCAGAATTTTTCTGACAGCCATTTCTCCGGAGACCTGTGTGTTCCGGAGGATGCTTTACGGGACCTGGAATGGCTTTCCAATGTTGTTGAGGAATCGTTTTCAAGCGAGGATCTTCAAAAGATGCAACTGATATCAGGCATGAAGGTGCGAAACCAGGACGAAGAACCCCGTGAGCTTTCCCAACCCAACCGAAACAGTCCTATATTCAACAAGGAAGTTTTGGTTCCAGCTAAGGCCCGTAGCAAGAGGACTCGTGGGCCCCCTTGCGACTGGAGCTCACGTCTTCTTGTTTTGTCTCAAACAACACCGTCTTCTTCTGAGTCAGAACTTCTTATTCCTACCCCCGCCTTACCTACCATCACTGTTCCAAGGAAGCAGGCAAAGACTGCTCCAAGAAGAAAGGACAGTGACGGAGGGTCAGGTGGAGATGGTCGGAGGTGTCTGCATTGCATGACAGACAAGACACCACAATGGCGAACCGGGCCTAATGGCCCGAAAACATTATGCAACGCTTGTGGTGTAAGATACAAGTCGGGTCGATTGGTGCCTGAATACAGGCCTGCAGCTAGCCCTACATTTGTGCTGACCAAACACTCCAACTCGCATCGTAAAGTGTTGGAGCTACGGAGGCAGAAGGAAATGTTGCGGGCACACCAACACCAACAAAACCAGATTTTACAACATCAGAGTATGATGTTTGATATGTCCAACAATGATGATTACTTGATTCACCAACATATGGGACCTGATTTTAGGCAGATGATGTAG
Protein sequence

>MsG0180002358.01.T01

MEGTTNNIFQTTFSSDNNTTDNFIVEDLLNLNNDVDDDATIISDTNLDSATVNSTASSSTVTVVNSVSSSSLSGCDPNVVPDIGCQNFSDSHFSGDLCVPEDALRDLEWLSNVVEESFSSEDLQKMQLISGMKVRNQDEEPRELSQPNRNSPIFNKEVLVPAKARSKRTRGPPCDWSSRLLVLSQTTPSSSESELLIPTPALPTITVPRKQAKTAPRRKDSDGGSGGDGRRCLHCMTDKTPQWRTGPNGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAHQHQQNQILQHQSMMFDMSNNDDYLIHQHMGPDFRQMM*