AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002471.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002471.01.T01 MTR_1g035620 86.076 395 47 5 66 456 23 413 0.0 686
MsG0180002471.01.T01 MTR_1g050845 87.430 358 25 4 66 419 23 364 0.0 612
MsG0180002471.01.T01 MTR_1g035570 46.929 407 163 12 66 451 19 393 3.38e-107 324
MsG0180002471.01.T01 MTR_1g035640 41.463 451 193 11 66 451 19 463 3.43e-95 295
MsG0180002471.01.T01 MTR_6g061070 35.214 443 225 13 66 451 32 469 8.46e-67 221
MsG0180002471.01.T01 MTR_1g035490 44.840 281 132 10 183 451 58 327 1.53e-61 203
MsG0180002471.01.T01 MTR_1g035650 57.895 190 56 5 66 240 23 203 3.80e-57 188
MsG0180002471.01.T01 MTR_5g044670 31.597 288 170 7 59 325 23 304 6.30e-32 124
MsG0180002471.01.T01 MTR_1g033740 42.568 148 65 5 66 199 36 177 1.19e-28 112
MsG0180002471.01.T01 MTR_8g103940 25.319 470 242 16 66 453 53 495 3.57e-28 117
MsG0180002471.01.T01 MTR_7g050710 29.749 279 174 7 66 322 27 305 3.08e-27 111
MsG0180002471.01.T01 MTR_3g098790 30.935 278 164 11 66 322 27 297 5.44e-26 108
MsG0180002471.01.T01 MTR_1g108780 25.482 467 252 19 65 453 10 458 1.09e-25 109
MsG0180002471.01.T01 MTR_1g035510 32.127 221 119 8 68 265 2 214 4.11e-25 103
MsG0180002471.01.T01 MTR_1g035510 48.113 106 44 2 304 406 125 222 4.21e-19 86.3
MsG0180002471.01.T01 MTR_7g050560 28.674 279 160 8 66 322 27 288 5.35e-25 105
MsG0180002471.01.T01 MTR_1g035480 38.298 141 79 3 66 199 31 170 1.68e-24 100
MsG0180002471.01.T01 MTR_7g050580 29.856 278 158 9 66 322 27 288 1.10e-23 101
MsG0180002471.01.T01 MTR_1g035500 38.194 144 78 4 66 199 39 181 3.63e-23 96.7
MsG0180002471.01.T01 MTR_1g035520 28.387 310 158 10 65 322 85 382 8.79e-23 100
MsG0180002471.01.T01 MTR_7g050590 26.712 292 162 6 68 322 2 278 1.30e-22 98.2
MsG0180002471.01.T01 MTR_1g035470 41.304 138 72 4 68 199 2 136 4.76e-22 92.4
MsG0180002471.01.T01 MTR_6g043890 26.937 271 164 8 66 310 29 291 4.26e-21 94.4
MsG0180002471.01.T01 MTR_7g050720 28.179 291 164 9 68 321 26 308 1.13e-20 92.8
MsG0180002471.01.T01 MTR_3g061320 25.091 275 168 10 66 322 24 278 1.55e-18 85.9
MsG0180002471.01.T01 MTR_3g061310 24.265 272 180 9 66 322 24 284 2.64e-18 85.5
MsG0180002471.01.T01 MTR_1g035460 24.749 299 166 11 68 322 2 285 2.77e-18 87.0
MsG0180002471.01.T01 MTR_3g061350 25.275 273 175 8 66 322 24 283 3.26e-18 85.1
MsG0180002471.01.T01 MTR_3g061340 26.374 273 162 9 66 322 24 273 1.51e-17 82.8
MsG0180002471.01.T01 MTR_3g061370 25.641 273 174 9 66 322 21 280 3.41e-17 82.0
MsG0180002471.01.T01 MTR_3g061290 30.128 156 100 3 66 218 24 173 5.04e-17 79.7
MsG0180002471.01.T01 MTR_4g119990 24.399 291 177 10 66 322 29 310 1.01e-15 79.0
MsG0180002471.01.T01 MTR_3g061330 27.041 196 121 4 66 246 24 212 3.85e-15 75.5
MsG0180002471.01.T01 MTR_7g050640 40.789 76 43 1 66 139 27 102 1.09e-11 62.0
MsG0180002471.01.T01 MTR_3g005490 24.060 266 162 8 66 328 35 263 2.16e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 71 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTGCAGATGACCCTTTA+AGG 0.106528 1:-38817122 None:intergenic
GTGCTCAAAAGGAAATATTT+TGG 0.171981 1:+38816388 MsG0180002471.01.T01:CDS
AAAATCTTAACCTTAAAATA+TGG 0.178478 1:-38816510 None:intergenic
TCTTCTTATGATGATGATAT+TGG 0.197327 1:+38817466 MsG0180002471.01.T01:CDS
ATTATCAGTCAACAGGATTT+AGG 0.220407 1:+38818200 MsG0180002471.01.T01:CDS
ATATTTGGTTTAAGAGAAAT+TGG 0.235240 1:+38816427 MsG0180002471.01.T01:CDS
AGAAATTTGTGGAGAAATAT+TGG 0.241294 1:+38816325 MsG0180002471.01.T01:CDS
TTTGGAAGTCTAAGAATTAC+TGG 0.251892 1:-38816363 None:intergenic
GCTTTAGTATTCAAATATTT+AGG 0.260785 1:+38816483 MsG0180002471.01.T01:CDS
TATTTGAATGAGAACCTTAA+AGG 0.282945 1:+38817108 MsG0180002471.01.T01:CDS
AGTCTAAGAATTACTGGATT+TGG 0.299817 1:-38816357 None:intergenic
ATATTTCTCCACAAATTTCT+TGG 0.318034 1:-38816322 None:intergenic
TCAGGTGGCTCTCGTTGATC+TGG 0.342780 1:-38812564 None:intergenic
AAGAAGCATAAAGAGCTTCA+TGG 0.346703 1:+38818124 MsG0180002471.01.T01:CDS
CTTCTTATGATGATGATATT+GGG 0.358933 1:+38817467 MsG0180002471.01.T01:CDS
TGGAGCGTGAAGGTGATATT+TGG 0.370024 1:+38816412 MsG0180002471.01.T01:CDS
GGGAAGAGAAGAGGCATTGA+AGG 0.377729 1:+38817487 MsG0180002471.01.T01:CDS
AACATCACCTTCACTTTCAT+AGG 0.384516 1:-38817165 None:intergenic
GAAGATTGCAAATTGAAGAT+TGG 0.386030 1:+38818250 MsG0180002471.01.T01:CDS
CCACAAACTTCTAGTTTGTC+AGG 0.386296 1:-38812582 None:intergenic
TTTGGCTTGGGTAATAGTTA+TGG 0.402099 1:-38817316 None:intergenic
TGTGGTGAATTATATCGTTT+CGG 0.402501 1:+38812600 MsG0180002471.01.T01:CDS
TATTTCTCCACAAATTTCTT+GGG 0.405795 1:-38816321 None:intergenic
TCATCTGCAAGCATTAGATT+TGG 0.416468 1:+38817132 MsG0180002471.01.T01:CDS
TTTGCAAAGTCTCTAAAAGA+TGG 0.419454 1:+38816456 MsG0180002471.01.T01:CDS
GACAATTCAAGTTCAAAACT+TGG 0.430631 1:-38816868 None:intergenic
ATTTGAATGAGAACCTTAAA+GGG 0.440321 1:+38817109 MsG0180002471.01.T01:CDS
GTGACATATTATCAGTCAAC+AGG 0.441169 1:+38818193 MsG0180002471.01.T01:CDS
AAATTTGTGGAGTTGACAAA+TGG 0.443876 1:+38818148 MsG0180002471.01.T01:CDS
ACTTCCAAATGGTGCTCAAA+AGG 0.444677 1:+38816377 MsG0180002471.01.T01:CDS
AAATCTTAACCTTAAAATAT+GGG 0.446492 1:-38816509 None:intergenic
GAACAATGACAAGGTTATGA+AGG 0.451012 1:+38817436 MsG0180002471.01.T01:intron
AGAGCTTCATGGAAAATTTG+TGG 0.455759 1:+38818135 MsG0180002471.01.T01:CDS
GGCAAATGGCTTCCAACCAC+TGG 0.462531 1:-38817223 None:intergenic
AATTTGTGGAGTTGACAAAT+GGG 0.465975 1:+38818149 MsG0180002471.01.T01:CDS
CCTGACAAACTAGAAGTTTG+TGG 0.474747 1:+38812582 MsG0180002471.01.T01:CDS
TATTTGGTTTAAGAGAAATT+GGG 0.488183 1:+38816428 MsG0180002471.01.T01:CDS
TTACGCCCATGGCTATACTT+TGG 0.489114 1:+38816897 MsG0180002471.01.T01:CDS
AACAACTAGTACTCTAGTAG+TGG 0.499577 1:-38818342 None:intergenic
GAGGGTTCCCAAGAAATTTG+TGG 0.503049 1:+38816314 MsG0180002471.01.T01:intron
ACAGGATTTAGGTTCTATGC+AGG 0.511151 1:+38818211 MsG0180002471.01.T01:CDS
GAGAGGAGGTATGATTAAGA+AGG 0.513052 1:+38816801 MsG0180002471.01.T01:CDS
TTCATTGATGAAAGTTGTGA+AGG 0.513828 1:+38816573 MsG0180002471.01.T01:CDS
TACTTTGCAGGTAGTAAGAG+AGG 0.516159 1:+38816784 MsG0180002471.01.T01:intron
TTTGTGGAGTTGACAAATGG+GGG 0.523569 1:+38818151 MsG0180002471.01.T01:CDS
GATTTAGGTTCTATGCAGGT+TGG 0.523741 1:+38818215 MsG0180002471.01.T01:CDS
GACTTACCAAAGTATAGCCA+TGG 0.533080 1:-38816903 None:intergenic
GTAATTCTTAGACTTCCAAA+TGG 0.548786 1:+38816366 MsG0180002471.01.T01:CDS
GAGGCATTGAAGGAAGTTCA+AGG 0.552649 1:+38817497 MsG0180002471.01.T01:CDS
ACACGAATCTCGATTGTGAT+CGG 0.556178 1:-38817981 None:intergenic
GACAATGTTACTAATAGTGC+TGG 0.567424 1:+38816633 MsG0180002471.01.T01:CDS
ATAGTTATGGTGAATGAAAG+TGG 0.568370 1:-38817303 None:intergenic
ACAACTAGTACTCTAGTAGT+GGG 0.569352 1:-38818341 None:intergenic
ATTTGTGGAGTTGACAAATG+GGG 0.577541 1:+38818150 MsG0180002471.01.T01:CDS
TCGTGTGAATTCTACTTACC+CGG 0.579086 1:+38817998 MsG0180002471.01.T01:CDS
GATGATATTGGGAAGAGAAG+AGG 0.582027 1:+38817478 MsG0180002471.01.T01:CDS
TTAGTATTCAAATATTTAGG+TGG 0.586781 1:+38816486 MsG0180002471.01.T01:CDS
TATGCTCTTGAAAAGTCACT+TGG 0.596669 1:-38817087 None:intergenic
ATAGTGCTGGCACATCTCAA+AGG 0.602521 1:+38816646 MsG0180002471.01.T01:CDS
CTTGCATTGTGACCAGTGGT+TGG 0.607128 1:+38817211 MsG0180002471.01.T01:CDS
AGTACATACTCGAAAGAACA+TGG 0.608206 1:-38817525 None:intergenic
CTGTGTTAGAAGAATTAGTG+AGG 0.610191 1:+38812538 MsG0180002471.01.T01:CDS
TTGTCACAATCTTACGCCCA+TGG 0.612713 1:+38816886 MsG0180002471.01.T01:CDS
ATAACTATTACCCAAGCCAA+AGG 0.622711 1:+38817318 MsG0180002471.01.T01:CDS
TTTGCAGGTAGTAAGAGAGG+AGG 0.644007 1:+38816787 MsG0180002471.01.T01:intron
ACTTACCAAAGTATAGCCAT+GGG 0.659069 1:-38816902 None:intergenic
AGTTCAACAATAAAGAGACT+CGG 0.663514 1:+38812502 MsG0180002471.01.T01:CDS
AGAACTTGCATTGTGACCAG+TGG 0.689771 1:+38817207 MsG0180002471.01.T01:CDS
CAACTAGTACTCTAGTAGTG+GGG 0.703552 1:-38818340 None:intergenic
GAACATGCCTATGAAAGTGA+AGG 0.707159 1:+38817158 MsG0180002471.01.T01:CDS
CAAACTTCTAGTTTGTCAGG+TGG 0.710254 1:-38812579 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTATATA+TGG + Chr1:38816737-38816756 MsG0180002471.01.T01:intron 0.0%
!! ATAAATAAAAGAAGTAAATT+GGG - Chr1:38815566-38815585 None:intergenic 10.0%
!! ATAAATTATTTAAAAGTTCA+AGG + Chr1:38817750-38817769 MsG0180002471.01.T01:intron 10.0%
!! TATAAATAAAAGAAGTAAAT+TGG - Chr1:38815567-38815586 None:intergenic 10.0%
!!! AGTTTTTAGATTTTTTAAAT+AGG + Chr1:38817555-38817574 MsG0180002471.01.T01:intron 10.0%
!!! ATTTAACTTAAAATAGTTAA+AGG - Chr1:38812960-38812979 None:intergenic 10.0%
!!! TATAAGTTACTAATAAATTT+TGG + Chr1:38817019-38817038 MsG0180002471.01.T01:intron 10.0%
!!! TTTAATTTTTTTAAATGGAA+AGG - Chr1:38813068-38813087 None:intergenic 10.0%
!!! TTTTTTTAAATAAAGTAAGA+AGG - Chr1:38817349-38817368 None:intergenic 10.0%
!! AAAAAATATAACTTACAAGT+TGG + Chr1:38817246-38817265 MsG0180002471.01.T01:CDS 15.0%
!! AAAAGAAATATGATAAAAAG+TGG - Chr1:38813200-38813219 None:intergenic 15.0%
!! AAAATAAGCATAATTGAAAT+AGG - Chr1:38815124-38815143 None:intergenic 15.0%
!! AAAATCTTAACCTTAAAATA+TGG - Chr1:38816513-38816532 None:intergenic 15.0%
!! AAATCTTAACCTTAAAATAT+GGG - Chr1:38816512-38816531 None:intergenic 15.0%
!! ACAATAATCATTTATGAATA+AGG - Chr1:38816286-38816305 None:intergenic 15.0%
!! ATATATTCATCAATCATAAA+TGG - Chr1:38815871-38815890 None:intergenic 15.0%
!! ATTATTAACAAATGTATAGT+TGG - Chr1:38816216-38816235 None:intergenic 15.0%
!! CAATTGATATTAAACAAATT+TGG - Chr1:38817398-38817417 None:intergenic 15.0%
!! TAAAATCCAACAAATAATAT+AGG - Chr1:38815070-38815089 None:intergenic 15.0%
!! TAAATAAAAGAAGTAAATTG+GGG - Chr1:38815565-38815584 None:intergenic 15.0%
!! TACTACTTAATTACTTAAAT+CGG + Chr1:38815638-38815657 MsG0180002471.01.T01:intron 15.0%
!! TACTGAAAGTAAAAATATAT+GGG + Chr1:38814285-38814304 MsG0180002471.01.T01:intron 15.0%
!! TATATTCATCAATCATAAAT+GGG - Chr1:38815870-38815889 None:intergenic 15.0%
!!! AACTTGTAAGTTATATTTTT+TGG - Chr1:38817247-38817266 None:intergenic 15.0%
!!! ATAGATTTTTTTAGTAGATT+TGG - Chr1:38815904-38815923 None:intergenic 15.0%
!!! CAATTAAATTTGTTATTTGT+CGG + Chr1:38815746-38815765 MsG0180002471.01.T01:intron 15.0%
!!! GAACTAGTTTTTTTTTTAAT+TGG - Chr1:38817777-38817796 None:intergenic 15.0%
!!! GTTCAAATATTATTTTTTGA+AGG + Chr1:38816949-38816968 MsG0180002471.01.T01:intron 15.0%
!!! GTTCTAAATTATTAGTTATT+TGG + Chr1:38816979-38816998 MsG0180002471.01.T01:intron 15.0%
!!! TATTTTAAGGTTAAGATTTT+TGG + Chr1:38816513-38816532 MsG0180002471.01.T01:CDS 15.0%
!!! TTCATCAATGAATTTTATAT+TGG - Chr1:38816565-38816584 None:intergenic 15.0%
!! AAATAAAAGAAGTAAATTGG+GGG - Chr1:38815564-38815583 None:intergenic 20.0%
!! AATAGGTTAACAAATTAAGT+TGG - Chr1:38813757-38813776 None:intergenic 20.0%
!! AATTTGAATACAAAACAACT+TGG + Chr1:38814804-38814823 MsG0180002471.01.T01:intron 20.0%
!! ACTAAAAAAATCTATCATTG+TGG + Chr1:38815909-38815928 MsG0180002471.01.T01:intron 20.0%
!! AGATATTAGAAATATGGTAA+TGG - Chr1:38816023-38816042 None:intergenic 20.0%
!! AGGATTAATTATGTTAAATG+TGG + Chr1:38818023-38818042 MsG0180002471.01.T01:intron 20.0%
!! ATGAAAACCAAAAAATTGAA+AGG + Chr1:38813542-38813561 MsG0180002471.01.T01:intron 20.0%
!! ATGCTTAACCATAAAAAAAA+TGG + Chr1:38813573-38813592 MsG0180002471.01.T01:intron 20.0%
!! CGACAAATAACAAATTTAAT+TGG - Chr1:38815748-38815767 None:intergenic 20.0%
!! CTAAAAAAATCTATCATTGT+GGG + Chr1:38815910-38815929 MsG0180002471.01.T01:intron 20.0%
!! GATTGCGATAATATTAAAAA+AGG - Chr1:38815523-38815542 None:intergenic 20.0%
!! GCTTTAGTATTCAAATATTT+AGG + Chr1:38816483-38816502 MsG0180002471.01.T01:CDS 20.0%
!! GTACTGAAAGTAAAAATATA+TGG + Chr1:38814284-38814303 MsG0180002471.01.T01:intron 20.0%
!! TAAGATCAAAGAAACTAAAA+AGG - Chr1:38815166-38815185 None:intergenic 20.0%
!! TAGTAATTATTGTCTCTATA+AGG - Chr1:38815623-38815642 None:intergenic 20.0%
!! TGATAACATAATAGTAAAAG+TGG - Chr1:38813342-38813361 None:intergenic 20.0%
!! TTAACATAATTAATCCTTAC+CGG - Chr1:38818020-38818039 None:intergenic 20.0%
!! TTAATAATCTTGGAGAAAAA+CGG - Chr1:38814875-38814894 None:intergenic 20.0%
!! TTAGTATTCAAATATTTAGG+TGG + Chr1:38816486-38816505 MsG0180002471.01.T01:CDS 20.0%
!! TTTGATCTTAAATTGATCTT+AGG + Chr1:38815176-38815195 MsG0180002471.01.T01:intron 20.0%
!!! AAATGAATAAGTAGTTTTAC+TGG + Chr1:38813654-38813673 MsG0180002471.01.T01:intron 20.0%
!!! AAGTTATATTTTTTGGCAAA+TGG - Chr1:38817240-38817259 None:intergenic 20.0%
!!! AGAAGTTTGTATTTGTTTTT+TGG - Chr1:38815972-38815991 None:intergenic 20.0%
!!! ATAACTAGTTTTCTAACATT+AGG + Chr1:38817625-38817644 MsG0180002471.01.T01:intron 20.0%
!!! ATCATATTTCTTTTGCTTTT+TGG + Chr1:38813206-38813225 MsG0180002471.01.T01:intron 20.0%
!!! CAATTTTCCTTTCAATTTTT+TGG - Chr1:38813552-38813571 None:intergenic 20.0%
!!! TAAAGAGAGTTCAAATTTTT+GGG - Chr1:38814848-38814867 None:intergenic 20.0%
!!! TTAAAGAGAGTTCAAATTTT+TGG - Chr1:38814849-38814868 None:intergenic 20.0%
!!! TTTGTAGACCATTTTTTTTA+TGG - Chr1:38813584-38813603 None:intergenic 20.0%
!!! TTTGTTTTTTTTTACTTTGC+AGG + Chr1:38816772-38816791 MsG0180002471.01.T01:intron 20.0%
! AAAAGGAATTTCTAATCTCT+TGG - Chr1:38815270-38815289 None:intergenic 25.0%
! AAACAACAAAGAATATTGCA+TGG - Chr1:38813387-38813406 None:intergenic 25.0%
! AAAGGAAAATACTATACTGA+TGG - Chr1:38812942-38812961 None:intergenic 25.0%
! AAATCATGAATTATCTTCCA+TGG + Chr1:38813991-38814010 MsG0180002471.01.T01:intron 25.0%
! AAGGAAAATACTATACTGAT+GGG - Chr1:38812941-38812960 None:intergenic 25.0%
! AATAAAAGAAGTAAATTGGG+GGG - Chr1:38815563-38815582 None:intergenic 25.0%
! AATCATGAATTATCTTCCAT+GGG + Chr1:38813992-38814011 MsG0180002471.01.T01:intron 25.0%
! AATGAATATGCAAAATGCAA+TGG - Chr1:38814980-38814999 None:intergenic 25.0%
! AGAAATTTGTGGAGAAATAT+TGG + Chr1:38816325-38816344 MsG0180002471.01.T01:CDS 25.0%
! ATAACTAAACACCGTATATT+AGG + Chr1:38815030-38815049 MsG0180002471.01.T01:intron 25.0%
! ATATTTCTCCACAAATTTCT+TGG - Chr1:38816325-38816344 None:intergenic 25.0%
! ATTAAACTTTGTCATGCAAA+AGG - Chr1:38815287-38815306 None:intergenic 25.0%
! ATTATTCAGCAAAAAATCAC+AGG + Chr1:38816690-38816709 MsG0180002471.01.T01:CDS 25.0%
! ATTTATAATTTAAGAGGGAG+AGG - Chr1:38817736-38817755 None:intergenic 25.0%
! ATTTGAATGAGAACCTTAAA+GGG + Chr1:38817109-38817128 MsG0180002471.01.T01:CDS 25.0%
! CTTAAGATTCTGCTAATTTA+TGG - Chr1:38813483-38813502 None:intergenic 25.0%
! GATGATCCTATATTATTTGT+TGG + Chr1:38815061-38815080 MsG0180002471.01.T01:intron 25.0%
! GGTTTCTGAATTAATAATCT+TGG - Chr1:38814885-38814904 None:intergenic 25.0%
! TAAACCTTGAATTGAAATAG+AGG + Chr1:38817061-38817080 MsG0180002471.01.T01:intron 25.0%
! TAACATAATTAATCCTTACC+GGG - Chr1:38818019-38818038 None:intergenic 25.0%
! TAACTAAACACCGTATATTA+GGG + Chr1:38815031-38815050 MsG0180002471.01.T01:intron 25.0%
! TAATAATCTTGGAGAAAAAC+GGG - Chr1:38814874-38814893 None:intergenic 25.0%
! TATTTCTCCACAAATTTCTT+GGG - Chr1:38816324-38816343 None:intergenic 25.0%
! TATTTGAATGAGAACCTTAA+AGG + Chr1:38817108-38817127 MsG0180002471.01.T01:CDS 25.0%
! TCAAACAAATGTAACATTCT+AGG - Chr1:38813439-38813458 None:intergenic 25.0%
! TCAAGATCATAATCACAATA+CGG + Chr1:38813152-38813171 MsG0180002471.01.T01:intron 25.0%
! TCAGACAGATATTAGAAATA+TGG - Chr1:38816029-38816048 None:intergenic 25.0%
! TGATTATGATCTTGAACTTA+CGG - Chr1:38813147-38813166 None:intergenic 25.0%
! TGGGATATATTTGGTAAAAT+AGG - Chr1:38813774-38813793 None:intergenic 25.0%
! TTATCTGTATAAGACTGAAA+AGG - Chr1:38812991-38813010 None:intergenic 25.0%
!! ACAAAATCATGAATTTTGAG+AGG - Chr1:38814533-38814552 None:intergenic 25.0%
!! AGTTCTTTTCTTTTTCTTGT+TGG + Chr1:38814241-38814260 MsG0180002471.01.T01:intron 25.0%
!! ATGAACATGTTAATTTGAGT+GGG + Chr1:38813901-38813920 MsG0180002471.01.T01:intron 25.0%
!! ATTTTGCAAATTCTGACTTT+TGG + Chr1:38814114-38814133 MsG0180002471.01.T01:intron 25.0%
!! CTTCTTATGATGATGATATT+GGG + Chr1:38817467-38817486 MsG0180002471.01.T01:CDS 25.0%
!! GATAGGAAAAAATTCAAGTT+TGG + Chr1:38814151-38814170 MsG0180002471.01.T01:intron 25.0%
!! GATTGTGATTTGTAATTGAA+AGG - Chr1:38816194-38816213 None:intergenic 25.0%
!! TCTTCTTATGATGATGATAT+TGG + Chr1:38817466-38817485 MsG0180002471.01.T01:CDS 25.0%
!! TGCTCAAAAGGAAATATTTT+GGG + Chr1:38816389-38816408 MsG0180002471.01.T01:CDS 25.0%
!!! AGGAGCTGAATTTTTTTAAA+GGG + Chr1:38812765-38812784 MsG0180002471.01.T01:intron 25.0%
!!! CATATTTTAGAGGTCTTTAA+AGG - Chr1:38813821-38813840 None:intergenic 25.0%
!!! TAAGAATTTTCTCTAGTTTG+AGG - Chr1:38814400-38814419 None:intergenic 25.0%
!!! TACAATGACACATATTTTAG+AGG - Chr1:38813831-38813850 None:intergenic 25.0%
!!! TATAACGTGGATTAGATTAA+AGG - Chr1:38813797-38813816 None:intergenic 25.0%
!!! TGATAGTGTTTTGATGTTTA+GGG + Chr1:38813710-38813729 MsG0180002471.01.T01:intron 25.0%
!!! TTGATAGTGTTTTGATGTTT+AGG + Chr1:38813709-38813728 MsG0180002471.01.T01:intron 25.0%
AAATTTGTGGAGTTGACAAA+TGG + Chr1:38818148-38818167 MsG0180002471.01.T01:CDS 30.0%
AACATGAGAAAAACACAAGA+AGG + Chr1:38814183-38814202 MsG0180002471.01.T01:intron 30.0%
AACTAAACACCGTATATTAG+GGG + Chr1:38815032-38815051 MsG0180002471.01.T01:intron 30.0%
AAGACACGTGAAATTTATTC+TGG + Chr1:38814316-38814335 MsG0180002471.01.T01:intron 30.0%
AAGTAAGAAGGAAAAACCTT+TGG - Chr1:38817337-38817356 None:intergenic 30.0%
AATGGTGTGTAATTAAGGAA+AGG + Chr1:38815783-38815802 MsG0180002471.01.T01:intron 30.0%
AATTCCTTTGAACAATGACA+AGG + Chr1:38817427-38817446 MsG0180002471.01.T01:intron 30.0%
AATTGAAATAGGACTGATAG+AGG - Chr1:38815113-38815132 None:intergenic 30.0%
AATTTGTGGAGTTGACAAAT+GGG + Chr1:38818149-38818168 MsG0180002471.01.T01:CDS 30.0%
ACATCTCAAAGGAGAAAAAA+CGG + Chr1:38816657-38816676 MsG0180002471.01.T01:CDS 30.0%
ACATGAGAAAAACACAAGAA+GGG + Chr1:38814184-38814203 MsG0180002471.01.T01:intron 30.0%
AGCAATGCTCATCATAAATT+TGG - Chr1:38815677-38815696 None:intergenic 30.0%
AGTCTAAGAATTACTGGATT+TGG - Chr1:38816360-38816379 None:intergenic 30.0%
AGTGCGCTTAATTATGTTTA+TGG - Chr1:38814459-38814478 None:intergenic 30.0%
AGTTCAACAATAAAGAGACT+CGG + Chr1:38812502-38812521 MsG0180002471.01.T01:CDS 30.0%
ATAACCTTGTCATTGTTCAA+AGG - Chr1:38817434-38817453 None:intergenic 30.0%
ATAAGGATATGTAATGCAAC+AGG - Chr1:38816269-38816288 None:intergenic 30.0%
ATAGTAAAAGTGGCTTGAAA+AGG - Chr1:38813332-38813351 None:intergenic 30.0%
ATAGTTATGGTGAATGAAAG+TGG - Chr1:38817306-38817325 None:intergenic 30.0%
ATCAAGAATCGATTAAGACA+AGG + Chr1:38815716-38815735 MsG0180002471.01.T01:intron 30.0%
ATCTTTGAACCCCTAATATA+CGG - Chr1:38815044-38815063 None:intergenic 30.0%
ATTAAACAGACGTTTATTGG+AGG + Chr1:38812912-38812931 MsG0180002471.01.T01:intron 30.0%
ATTATCAGTCAACAGGATTT+AGG + Chr1:38818200-38818219 MsG0180002471.01.T01:CDS 30.0%
CCGAGAAAATAACATTCAAA+CGG - Chr1:38813236-38813255 None:intergenic 30.0%
CGAAATCATGAACTACATAA+GGG + Chr1:38816091-38816110 MsG0180002471.01.T01:intron 30.0%
GAAGATTGCAAATTGAAGAT+TGG + Chr1:38818250-38818269 MsG0180002471.01.T01:CDS 30.0%
GACATTAAACAGACGTTTAT+TGG + Chr1:38812909-38812928 MsG0180002471.01.T01:intron 30.0%
GATTAAAGGTGGGATATATT+TGG - Chr1:38813783-38813802 None:intergenic 30.0%
GCTCAAGTAAATTATGCATA+CGG - Chr1:38815241-38815260 None:intergenic 30.0%
GTAATTCTTAGACTTCCAAA+TGG + Chr1:38816366-38816385 MsG0180002471.01.T01:CDS 30.0%
GTATCCTCTATTTCAATTCA+AGG - Chr1:38817068-38817087 None:intergenic 30.0%
TAGAATTCACATACCTTTCT+CGG - Chr1:38814091-38814110 None:intergenic 30.0%
TCGAAATCATGAACTACATA+AGG + Chr1:38816090-38816109 MsG0180002471.01.T01:intron 30.0%
TCGGAAATCAATAGAGATAA+TGG + Chr1:38815765-38815784 MsG0180002471.01.T01:intron 30.0%
TGCAATCTTTGCTTTGATTA+AGG + Chr1:38814639-38814658 MsG0180002471.01.T01:intron 30.0%
TGTGGTGAATTATATCGTTT+CGG + Chr1:38812600-38812619 MsG0180002471.01.T01:CDS 30.0%
TTAAACAGACGTTTATTGGA+GGG + Chr1:38812913-38812932 MsG0180002471.01.T01:intron 30.0%
TTACCAATTTCCTTCAAGAA+GGG - Chr1:38814022-38814041 None:intergenic 30.0%
TTCAAAATCTCCTTAACGAA+AGG - Chr1:38814571-38814590 None:intergenic 30.0%
TTCATTGATGAAAGTTGTGA+AGG + Chr1:38816573-38816592 MsG0180002471.01.T01:CDS 30.0%
TTTGGAAGTCTAAGAATTAC+TGG - Chr1:38816366-38816385 None:intergenic 30.0%
! AAAATTTGTTTCTCACAGCA+AGG + Chr1:38813104-38813123 MsG0180002471.01.T01:intron 30.0%
! CAGAATCTTAAGTGTTGTAT+GGG + Chr1:38813491-38813510 MsG0180002471.01.T01:intron 30.0%
! CATGAACATGTTAATTTGAG+TGG + Chr1:38813900-38813919 MsG0180002471.01.T01:intron 30.0%
! GACAATTCAAGTTCAAAACT+TGG - Chr1:38816871-38816890 None:intergenic 30.0%
! GAGATAATGGTGTGTAATTA+AGG + Chr1:38815778-38815797 MsG0180002471.01.T01:intron 30.0%
! GTGCTCAAAAGGAAATATTT+TGG + Chr1:38816388-38816407 MsG0180002471.01.T01:CDS 30.0%
! TGATGCTTTTGATCAAATCT+TGG + Chr1:38814692-38814711 MsG0180002471.01.T01:intron 30.0%
! TGGCTATTTCATTACTTGAT+AGG + Chr1:38814134-38814153 MsG0180002471.01.T01:intron 30.0%
! TTTGCAAAGTCTCTAAAAGA+TGG + Chr1:38816456-38816475 MsG0180002471.01.T01:CDS 30.0%
!! TCAAAAGGAAATATTTTGGG+TGG + Chr1:38816392-38816411 MsG0180002471.01.T01:CDS 30.0%
!!! AAGGATTGTTGTTTTCTACT+AGG - Chr1:38815604-38815623 None:intergenic 30.0%
!!! CCGTTTGAATGTTATTTTCT+CGG + Chr1:38813233-38813252 MsG0180002471.01.T01:intron 30.0%
!!! GAGGAGCTGAATTTTTTTAA+AGG + Chr1:38812764-38812783 MsG0180002471.01.T01:intron 30.0%
!!! GATTTTTGGTCACAATACAT+TGG + Chr1:38816527-38816546 MsG0180002471.01.T01:CDS 30.0%
!!! TTTTTTTAAAGGGAGAACGA+CGG + Chr1:38812775-38812794 MsG0180002471.01.T01:intron 30.0%
AAACAAGCAGCATTAAGAGT+AGG - Chr1:38813026-38813045 None:intergenic 35.0%
AACAACTAGTACTCTAGTAG+TGG - Chr1:38818345-38818364 None:intergenic 35.0%
AACATCAAGTCCTTTCGTTA+AGG + Chr1:38814558-38814577 MsG0180002471.01.T01:intron 35.0%
AACATCACCTTCACTTTCAT+AGG - Chr1:38817168-38817187 None:intergenic 35.0%
AATTCATAGGCAAAAGAGTG+CGG + Chr1:38814909-38814928 MsG0180002471.01.T01:intron 35.0%
ACAACTAGTACTCTAGTAGT+GGG - Chr1:38818344-38818363 None:intergenic 35.0%
ACTATCTTCAAGAACTCTTC+TGG - Chr1:38816070-38816089 None:intergenic 35.0%
ACTTACCAAAGTATAGCCAT+GGG - Chr1:38816905-38816924 None:intergenic 35.0%
AGAGCTTCATGGAAAATTTG+TGG + Chr1:38818135-38818154 MsG0180002471.01.T01:CDS 35.0%
AGTACATACTCGAAAGAACA+TGG - Chr1:38817528-38817547 None:intergenic 35.0%
ATAACTATTACCCAAGCCAA+AGG + Chr1:38817318-38817337 MsG0180002471.01.T01:CDS 35.0%
ATATCCATGCCAATACAACA+TGG - Chr1:38813683-38813702 None:intergenic 35.0%
ATGATTATTGTCTGTTGCAG+AGG + Chr1:38816295-38816314 MsG0180002471.01.T01:intron 35.0%
ATTTGTGGAGTTGACAAATG+GGG + Chr1:38818150-38818169 MsG0180002471.01.T01:CDS 35.0%
CAACAAAGAATATTGCATGG+AGG - Chr1:38813384-38813403 None:intergenic 35.0%
CATGAGAAAAACACAAGAAG+GGG + Chr1:38814185-38814204 MsG0180002471.01.T01:intron 35.0%
CATTCTAGGTTCAAAACTTG+TGG - Chr1:38813425-38813444 None:intergenic 35.0%
CTGTGTTAGAAGAATTAGTG+AGG + Chr1:38812538-38812557 MsG0180002471.01.T01:CDS 35.0%
CTTACCAATTTCCTTCAAGA+AGG - Chr1:38814023-38814042 None:intergenic 35.0%
GAACAATGACAAGGTTATGA+AGG + Chr1:38817436-38817455 MsG0180002471.01.T01:intron 35.0%
GACAATGTTACTAATAGTGC+TGG + Chr1:38816633-38816652 MsG0180002471.01.T01:CDS 35.0%
GAGGGGGTTAAATTATGTTA+TGG + Chr1:38814207-38814226 MsG0180002471.01.T01:intron 35.0%
GAGGTAAAAGTTCTCTAATC+AGG - Chr1:38814381-38814400 None:intergenic 35.0%
GATCCAAGAAATCAACAGTT+TGG + Chr1:38813621-38813640 MsG0180002471.01.T01:intron 35.0%
GGTGTGAGACAAAATTCTAA+CGG - Chr1:38815502-38815521 None:intergenic 35.0%
GTAAATTATGCATACGGACT+CGG - Chr1:38815235-38815254 None:intergenic 35.0%
GTATGGGTAATAGTACAACT+TGG + Chr1:38813507-38813526 MsG0180002471.01.T01:intron 35.0%
GTGACATATTATCAGTCAAC+AGG + Chr1:38818193-38818212 MsG0180002471.01.T01:CDS 35.0%
TAAGTCTTCATTAGCACTAG+CGG + Chr1:38815330-38815349 MsG0180002471.01.T01:intron 35.0%
TAATCCAACAAAGACGTAAG+AGG + Chr1:38815457-38815476 MsG0180002471.01.T01:intron 35.0%
TATCCATGCCAATACAACAT+GGG - Chr1:38813682-38813701 None:intergenic 35.0%
TATGCTCTTGAAAAGTCACT+TGG - Chr1:38817090-38817109 None:intergenic 35.0%
TCAGAAACCTGACAATTCAT+AGG + Chr1:38814896-38814915 MsG0180002471.01.T01:intron 35.0%
TCATCTGCAAGCATTAGATT+TGG + Chr1:38817132-38817151 MsG0180002471.01.T01:CDS 35.0%
TGAAATATTCACCCTGACTT+CGG + Chr1:38812866-38812885 MsG0180002471.01.T01:intron 35.0%
TGAGAATTCTAATACCCTTG+TGG - Chr1:38814348-38814367 None:intergenic 35.0%
TGATTATTGTCTGTTGCAGA+GGG + Chr1:38816296-38816315 MsG0180002471.01.T01:intron 35.0%
TTTCCCTTCTTGAAGGAAAT+TGG + Chr1:38814016-38814035 MsG0180002471.01.T01:intron 35.0%
! AAGAAGCATAAAGAGCTTCA+TGG + Chr1:38818124-38818143 MsG0180002471.01.T01:CDS 35.0%
! AATGCTCTTCTTTTTCTCTG+AGG - Chr1:38812833-38812852 None:intergenic 35.0%
! ATTTCCTTTTGAGCACCATT+TGG - Chr1:38816384-38816403 None:intergenic 35.0%
! GCAGAATCTTAAGTGTTGTA+TGG + Chr1:38813490-38813509 MsG0180002471.01.T01:intron 35.0%
! GGTCTTTAAAGGTTATAACG+TGG - Chr1:38813810-38813829 None:intergenic 35.0%
! TCCTGATACTGATAATGCTT+GGG + Chr1:38812726-38812745 MsG0180002471.01.T01:intron 35.0%
! TCTTTTGCCTATGAATTGTC+AGG - Chr1:38814906-38814925 None:intergenic 35.0%
! TGCAGGTTGGCAAAAATTTA+AGG + Chr1:38818228-38818247 MsG0180002471.01.T01:CDS 35.0%
! TGGATTTTACTTCAAGTGCA+TGG + Chr1:38815081-38815100 MsG0180002471.01.T01:intron 35.0%
! TTTAGGTGGCCCATATTTTA+AGG + Chr1:38816500-38816519 MsG0180002471.01.T01:CDS 35.0%
!! AACGTGGATTAGATTAAAGG+TGG - Chr1:38813794-38813813 None:intergenic 35.0%
!! ACGTGGATTAGATTAAAGGT+GGG - Chr1:38813793-38813812 None:intergenic 35.0%
!! AGACCAAACTGTTGATTTCT+TGG - Chr1:38813627-38813646 None:intergenic 35.0%
!! AGAGAAAAAGAAGAGCATTG+TGG + Chr1:38812834-38812853 MsG0180002471.01.T01:intron 35.0%
!! CAGATACACGTTTTAATGCA+AGG - Chr1:38814674-38814693 None:intergenic 35.0%
!! TTTGGCTTGGGTAATAGTTA+TGG - Chr1:38817319-38817338 None:intergenic 35.0%
AAATGGGGGAAAATCATGGT+TGG + Chr1:38818165-38818184 MsG0180002471.01.T01:CDS 40.0%
AATGCAATGGAATGAGTGGA+AGG - Chr1:38814967-38814986 None:intergenic 40.0%
ACACGAATCTCGATTGTGAT+CGG - Chr1:38817984-38818003 None:intergenic 40.0%
ACAGTCAGACATTGAAGACA+TGG - Chr1:38814615-38814634 None:intergenic 40.0%
ACTTCCAAATGGTGCTCAAA+AGG + Chr1:38816377-38816396 MsG0180002471.01.T01:CDS 40.0%
AGAAAAACACAAGAAGGGGA+GGG + Chr1:38814189-38814208 MsG0180002471.01.T01:intron 40.0%
AGAAGGAAAAACCTTTGGCT+TGG - Chr1:38817332-38817351 None:intergenic 40.0%
AGCGGAGCAATATTTCACAA+AGG + Chr1:38815348-38815367 MsG0180002471.01.T01:intron 40.0%
ATGCAATGGAATGAGTGGAA+GGG - Chr1:38814966-38814985 None:intergenic 40.0%
CAACTAGTACTCTAGTAGTG+GGG - Chr1:38818343-38818362 None:intergenic 40.0%
CAAGCATTATCAGTATCAGG+AGG - Chr1:38812727-38812746 None:intergenic 40.0%
CATTGTGTTTCAGCAGACTT+AGG + Chr1:38817942-38817961 MsG0180002471.01.T01:intron 40.0%
CCTGACAAACTAGAAGTTTG+TGG + Chr1:38812582-38812601 MsG0180002471.01.T01:CDS 40.0%
GAACATGCCTATGAAAGTGA+AGG + Chr1:38817158-38817177 MsG0180002471.01.T01:CDS 40.0%
GAATCCTCTTACGTCTTTGT+TGG - Chr1:38815464-38815483 None:intergenic 40.0%
GACTTACCAAAGTATAGCCA+TGG - Chr1:38816906-38816925 None:intergenic 40.0%
GATGATATTGGGAAGAGAAG+AGG + Chr1:38817478-38817497 MsG0180002471.01.T01:CDS 40.0%
GCAAAATGCAATGGAATGAG+TGG - Chr1:38814971-38814990 None:intergenic 40.0%
GCGGAGCAATATTTCACAAA+GGG + Chr1:38815349-38815368 MsG0180002471.01.T01:intron 40.0%
GGTTTGAAAACACCCTTCTT+TGG - Chr1:38814944-38814963 None:intergenic 40.0%
GTCAGAAGTGAAACGAATTG+AGG + Chr1:38814052-38814071 MsG0180002471.01.T01:intron 40.0%
GTGTATGGGAATACGACTAA+CGG - Chr1:38813282-38813301 None:intergenic 40.0%
TACTGGTACCCATGTTGTAT+TGG + Chr1:38813671-38813690 MsG0180002471.01.T01:intron 40.0%
TACTTTGCAGGTAGTAAGAG+AGG + Chr1:38816784-38816803 MsG0180002471.01.T01:intron 40.0%
TAGGTTCAAAACTTGTGGCA+TGG - Chr1:38813420-38813439 None:intergenic 40.0%
TCGTGTGAATTCTACTTACC+CGG + Chr1:38817998-38818017 MsG0180002471.01.T01:CDS 40.0%
TGAATTCTACTTACCCGGTA+AGG + Chr1:38818003-38818022 MsG0180002471.01.T01:intron 40.0%
TGACAAATGGGGGAAAATCA+TGG + Chr1:38818161-38818180 MsG0180002471.01.T01:CDS 40.0%
TTTGTGGAGTTGACAAATGG+GGG + Chr1:38818151-38818170 MsG0180002471.01.T01:CDS 40.0%
! ACAGGATTTAGGTTCTATGC+AGG + Chr1:38818211-38818230 MsG0180002471.01.T01:CDS 40.0%
! CCTGATACTGATAATGCTTG+GGG + Chr1:38812727-38812746 MsG0180002471.01.T01:intron 40.0%
! CTCCTGATACTGATAATGCT+TGG + Chr1:38812725-38812744 MsG0180002471.01.T01:intron 40.0%
! GAAGGAAAAACCTTTGGCTT+GGG - Chr1:38817331-38817350 None:intergenic 40.0%
! GAGAGGAGGTATGATTAAGA+AGG + Chr1:38816801-38816820 MsG0180002471.01.T01:CDS 40.0%
! GATTTAGGTTCTATGCAGGT+TGG + Chr1:38818215-38818234 MsG0180002471.01.T01:CDS 40.0%
!! ACACTGCTTGCTATGAGATT+TGG + Chr1:38813939-38813958 MsG0180002471.01.T01:intron 40.0%
!! CAAACTTCTAGTTTGTCAGG+TGG - Chr1:38812582-38812601 None:intergenic 40.0%
!! CCACAAACTTCTAGTTTGTC+AGG - Chr1:38812585-38812604 None:intergenic 40.0%
!! TATTCTGGTTCACTCCACAA+GGG + Chr1:38814331-38814350 MsG0180002471.01.T01:intron 40.0%
!! TTATTCTGGTTCACTCCACA+AGG + Chr1:38814330-38814349 MsG0180002471.01.T01:intron 40.0%
AAAAACACAAGAAGGGGAGG+GGG + Chr1:38814191-38814210 MsG0180002471.01.T01:intron 45.0%
AGAACTTGCATTGTGACCAG+TGG + Chr1:38817207-38817226 MsG0180002471.01.T01:CDS 45.0%
AGAAGTCTTGAAACTTCCCG+AGG + Chr1:38812687-38812706 MsG0180002471.01.T01:intron 45.0%
AGGACAAATCATCCAAGCCT+CGG - Chr1:38812707-38812726 None:intergenic 45.0%
ATAGCAAGCAGTGTCTGTCA+TGG - Chr1:38813933-38813952 None:intergenic 45.0%
ATATGAGCACTCTCCGAGAA+AGG + Chr1:38814075-38814094 MsG0180002471.01.T01:intron 45.0%
ATTGCATGGAGGCTCAAAGA+GGG - Chr1:38813373-38813392 None:intergenic 45.0%
CCCCAAGCATTATCAGTATC+AGG - Chr1:38812730-38812749 None:intergenic 45.0%
CCTACTTCAGCTATGGTCAT+CGG - Chr1:38815376-38815395 None:intergenic 45.0%
CTCACGATGTCTAACATACG+AGG - Chr1:38815399-38815418 None:intergenic 45.0%
CTTCAAGAAGGGAAAACCCA+TGG - Chr1:38814011-38814030 None:intergenic 45.0%
GAAAAACACAAGAAGGGGAG+GGG + Chr1:38814190-38814209 MsG0180002471.01.T01:intron 45.0%
GAGAAAAACACAAGAAGGGG+AGG + Chr1:38814188-38814207 MsG0180002471.01.T01:intron 45.0%
GAGGGTTCCCAAGAAATTTG+TGG + Chr1:38816314-38816333 MsG0180002471.01.T01:intron 45.0%
GTTTCTCACAGCAAGGCATA+TGG + Chr1:38813111-38813130 MsG0180002471.01.T01:intron 45.0%
TATTGCATGGAGGCTCAAAG+AGG - Chr1:38813374-38813393 None:intergenic 45.0%
TGCAATGGAATGAGTGGAAG+GGG - Chr1:38814965-38814984 None:intergenic 45.0%
TGCTTGCAGATGACCCTTTA+AGG - Chr1:38817125-38817144 None:intergenic 45.0%
TGGAGCGTGAAGGTGATATT+TGG + Chr1:38816412-38816431 MsG0180002471.01.T01:CDS 45.0%
TGGGGTGAGACAAATGAATG+AGG + Chr1:38812745-38812764 MsG0180002471.01.T01:intron 45.0%
TGTGTTTCAGCAGACTTAGG+TGG + Chr1:38817945-38817964 MsG0180002471.01.T01:intron 45.0%
TTACGCCCATGGCTATACTT+TGG + Chr1:38816897-38816916 MsG0180002471.01.T01:CDS 45.0%
TTGTCACAATCTTACGCCCA+TGG + Chr1:38816886-38816905 MsG0180002471.01.T01:CDS 45.0%
TTTGCAGGTAGTAAGAGAGG+AGG + Chr1:38816787-38816806 MsG0180002471.01.T01:intron 45.0%
! CATGGGTTTTCCCTTCTTGA+AGG + Chr1:38814009-38814028 MsG0180002471.01.T01:intron 45.0%
! GTACCCATGTTGTATTGGCA+TGG + Chr1:38813676-38813695 MsG0180002471.01.T01:intron 45.0%
!! ATAGTGCTGGCACATCTCAA+AGG + Chr1:38816646-38816665 MsG0180002471.01.T01:CDS 45.0%
!! ATATTTTGGGTGGAGCGTGA+AGG + Chr1:38816402-38816421 MsG0180002471.01.T01:CDS 45.0%
!! GAGGCATTGAAGGAAGTTCA+AGG + Chr1:38817497-38817516 MsG0180002471.01.T01:CDS 45.0%
!! TTTTAAAGGGAGAACGACGG+AGG + Chr1:38812778-38812797 MsG0180002471.01.T01:intron 45.0%
!! AAATAATTTATAATTTAAGA+GGG - Chr1:38817741-38817760 None:intergenic 5.0%
!! TAAATAATTTATAATTTAAG+AGG - Chr1:38817742-38817761 None:intergenic 5.0%
!!! CAATTTTTAATTTTTTTAAA+TGG - Chr1:38813073-38813092 None:intergenic 5.0%
!!! TTTTGAATTTATAATAATTT+AGG + Chr1:38817686-38817705 MsG0180002471.01.T01:intron 5.0%
CCGATGACCATAGCTGAAGT+AGG + Chr1:38815373-38815392 MsG0180002471.01.T01:intron 50.0%
CTTGCATTGTGACCAGTGGT+TGG + Chr1:38817211-38817230 MsG0180002471.01.T01:CDS 50.0%
GGACAAATCATCCAAGCCTC+GGG - Chr1:38812706-38812725 None:intergenic 50.0%
GTCGTATTCCCATACACACG+AGG + Chr1:38813285-38813304 MsG0180002471.01.T01:intron 50.0%
TACGAGGCCTACTTCAGCTA+TGG - Chr1:38815383-38815402 None:intergenic 50.0%
TCTTGAAACTTCCCGAGGCT+TGG + Chr1:38812692-38812711 MsG0180002471.01.T01:intron 50.0%
! CGGCTAGAGCATCCAAAGAA+GGG + Chr1:38814929-38814948 MsG0180002471.01.T01:intron 50.0%
!! GCTTGCTATGAGATTTGGCG+AGG + Chr1:38813944-38813963 MsG0180002471.01.T01:intron 50.0%
!! GGGAAGAGAAGAGGCATTGA+AGG + Chr1:38817487-38817506 MsG0180002471.01.T01:CDS 50.0%
AACCACGTGCCTCGTGTGTA+TGG - Chr1:38813297-38813316 None:intergenic 55.0%
ACCACGTGCCTCGTGTGTAT+GGG - Chr1:38813296-38813315 None:intergenic 55.0%
CAAGCAGTGTCTGTCATGGC+AGG - Chr1:38813929-38813948 None:intergenic 55.0%
GGCAAATGGCTTCCAACCAC+TGG - Chr1:38817226-38817245 None:intergenic 55.0%
TCAGGTGGCTCTCGTTGATC+TGG - Chr1:38812567-38812586 None:intergenic 55.0%
! ACGAACCAGCACCGAAGTCA+GGG - Chr1:38812880-38812899 None:intergenic 55.0%
! ATTCACCCTGACTTCGGTGC+TGG + Chr1:38812872-38812891 MsG0180002471.01.T01:intron 55.0%
! GCGGCTAGAGCATCCAAAGA+AGG + Chr1:38814928-38814947 MsG0180002471.01.T01:intron 55.0%
TCCCATACACACGAGGCACG+TGG + Chr1:38813292-38813311 MsG0180002471.01.T01:intron 60.0%
! GACGAACCAGCACCGAAGTC+AGG - Chr1:38812881-38812900 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 38812450 38818458 38812450 ID=MsG0180002471.01;Name=MsG0180002471.01
Chr1 mRNA 38812450 38818458 38812450 ID=MsG0180002471.01.T01;Parent=MsG0180002471.01;Name=MsG0180002471.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|7|107|457
Chr1 exon 38818103 38818458 38818103 ID=MsG0180002471.01.T01:exon:12610;Parent=MsG0180002471.01.T01
Chr1 exon 38817964 38818019 38817964 ID=MsG0180002471.01.T01:exon:12609;Parent=MsG0180002471.01.T01
Chr1 exon 38817449 38817538 38817449 ID=MsG0180002471.01.T01:exon:12608;Parent=MsG0180002471.01.T01
Chr1 exon 38817081 38817339 38817081 ID=MsG0180002471.01.T01:exon:12607;Parent=MsG0180002471.01.T01
Chr1 exon 38816794 38816918 38816794 ID=MsG0180002471.01.T01:exon:12606;Parent=MsG0180002471.01.T01
Chr1 exon 38816315 38816711 38816315 ID=MsG0180002471.01.T01:exon:12605;Parent=MsG0180002471.01.T01
Chr1 exon 38812450 38812647 38812450 ID=MsG0180002471.01.T01:exon:12604;Parent=MsG0180002471.01.T01
Chr1 CDS 38812450 38812647 38812450 ID=MsG0180002471.01.T01:cds;Parent=MsG0180002471.01.T01
Chr1 CDS 38816315 38816711 38816315 ID=MsG0180002471.01.T01:cds;Parent=MsG0180002471.01.T01
Chr1 CDS 38816794 38816918 38816794 ID=MsG0180002471.01.T01:cds;Parent=MsG0180002471.01.T01
Chr1 CDS 38817081 38817339 38817081 ID=MsG0180002471.01.T01:cds;Parent=MsG0180002471.01.T01
Chr1 CDS 38817449 38817538 38817449 ID=MsG0180002471.01.T01:cds;Parent=MsG0180002471.01.T01
Chr1 CDS 38817964 38818019 38817964 ID=MsG0180002471.01.T01:cds;Parent=MsG0180002471.01.T01
Chr1 CDS 38818103 38818351 38818103 ID=MsG0180002471.01.T01:cds;Parent=MsG0180002471.01.T01
Chr1 three_prime_UTR 38818352 38818458 38818352 ID=MsG0180002471.01.T01:three_prime_utr;Parent=MsG0180002471.01.T01
Gene Sequence

>MsG0180002471.01.T01

ATGTTAAGATATGAGAATGAACATGTCTATTACAATGTGTTTGAATCTATGAAGTTCAACAATAAAGAGACTCGGTGTTACAAAATAGCTGTGTTAGAAGAATTAGTGAGGAATCCAGATCAACGAGAGCCACCTGACAAACTAGAAGTTTGTGGTGAATTATATCGTTTCGGAAAAGCTGAAGAAAGAAGATTAATAAGGGTTCCCAAGAAATTTGTGGAGAAATATTGGAAAAAAATACCAAATCCAGTAATTCTTAGACTTCCAAATGGTGCTCAAAAGGAAATATTTTGGGTGGAGCGTGAAGGTGATATTTGGTTTAAGAGAAATTGGGAGAATTTTGCAAAGTCTCTAAAAGATGGATATGCTTTAGTATTCAAATATTTAGGTGGCCCATATTTTAAGGTTAAGATTTTTGGTCACAATACATTGGAAAAAGACTATTCCAATATAAAATTCATTGATGAAAGTTGTGAAGGTAGAGAAGAAGTTCAAGAAGTTGTTGAACTGAGTGATGACAATGTTACTAATAGTGCTGGCACATCTCAAAGGAGAAAAAACGGCAAGAGAAAAATTATTCAGCAAAAAATCACAGGTAGTAAGAGAGGAGGTATGATTAAGAAGGCTAAAAAATGCTCAACAATTAGTGAGAGAGACAATAATGAGAATCCAAGTTTTGAACTTGAATTGTCACAATCTTACGCCCATGGCTATACTTTGAGGATACCAAGTGACTTTTCAAGAGCATATTTGAATGAGAACCTTAAAGGGTCATCTGCAAGCATTAGATTTGGTGAGAACATGCCTATGAAAGTGAAGGTGATGTTTCAAGATATCAAGAATAATAGAACTTGCATTGTGACCAGTGGTTGGAAGCCATTTGCCAAAAAATATAACTTACAAGTTGGTGATAAATGTAAATTTGTGATGACTCAACTTCAACCACTTTCATTCACCATAACTATTACCCAAGCCAAAGGTTATGAAGGAATGATCTCTTCTTATGATGATGATATTGGGAAGAGAAGAGGCATTGAAGGAAGTTCAAGGAGCTGCCATGTTCTTTCGAGTGGTAATGTGATGAAACCGATCACAATCGAGATTCGTGTGAATTCTACTTACCCGTATATTCGACATGAGTTTTTTAAGAAGCATAAAGAGCTTCATGGAAAATTTGTGGAGTTGACAAATGGGGGAAAATCATGGTTGGTAAAAGTGACATATTATCAGTCAACAGGATTTAGGTTCTATGCAGGTTGGCAAAAATTTAAGGAAGATTGCAAATTGAAGATTGGAGATACTTGCAAATTGAAGTTGATTGATGAAAAAATGTTTGTGTTTCAAGTTTCAATTGAAAGACTTCCCCACTACTAG
Protein sequence

>MsG0180002471.01.T01

MLRYENEHVYYNVFESMKFNNKETRCYKIAVLEELVRNPDQREPPDKLEVCGELYRFGKAEERRLIRVPKKFVEKYWKKIPNPVILRLPNGAQKEIFWVEREGDIWFKRNWENFAKSLKDGYALVFKYLGGPYFKVKIFGHNTLEKDYSNIKFIDESCEGREEVQEVVELSDDNVTNSAGTSQRRKNGKRKIIQQKITGSKRGGMIKKAKKCSTISERDNNENPSFELELSQSYAHGYTLRIPSDFSRAYLNENLKGSSASIRFGENMPMKVKVMFQDIKNNRTCIVTSGWKPFAKKYNLQVGDKCKFVMTQLQPLSFTITITQAKGYEGMISSYDDDIGKRRGIEGSSRSCHVLSSGNVMKPITIEIRVNSTYPYIRHEFFKKHKELHGKFVELTNGGKSWLVKVTYYQSTGFRFYAGWQKFKEDCKLKIGDTCKLKLIDEKMFVFQVSIERLPHY*