Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002474.01.T01 | XP_039688461.1 | 91.475 | 305 | 25 | 1 | 13 | 317 | 1 | 304 | 0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002474.01.T01 | Q84R27 | 33.628 | 113 | 74 | 1 | 11 | 123 | 18 | 129 | 3.61E-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002474.01.T01 | A0A396JU70 | 90.968 | 310 | 26 | 2 | 13 | 322 | 1 | 308 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180002474.01.T01 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002474.01.T01 | MTR_4g119990 | 63.063 | 333 | 96 | 7 | 13 | 322 | 1 | 329 | 2.28e-138 | 397 |
| MsG0180002474.01.T01 | MTR_6g043890 | 61.967 | 305 | 87 | 7 | 13 | 296 | 1 | 297 | 3.51e-124 | 359 |
| MsG0180002474.01.T01 | MTR_1g035440 | 56.790 | 243 | 64 | 5 | 13 | 214 | 1 | 243 | 4.96e-70 | 218 |
| MsG0180002474.01.T01 | MTR_3g098790 | 29.210 | 291 | 196 | 6 | 21 | 304 | 11 | 298 | 9.25e-32 | 121 |
| MsG0180002474.01.T01 | MTR_5g044670 | 31.119 | 286 | 167 | 10 | 23 | 290 | 16 | 289 | 6.34e-31 | 119 |
| MsG0180002474.01.T01 | MTR_7g050720 | 29.450 | 309 | 191 | 9 | 21 | 304 | 8 | 314 | 2.05e-30 | 117 |
| MsG0180002474.01.T01 | MTR_3g061310 | 29.352 | 293 | 181 | 9 | 21 | 304 | 10 | 285 | 8.08e-30 | 115 |
| MsG0180002474.01.T01 | MTR_7g050560 | 30.466 | 279 | 172 | 7 | 21 | 290 | 11 | 276 | 1.39e-29 | 115 |
| MsG0180002474.01.T01 | MTR_3g061350 | 28.814 | 295 | 179 | 11 | 21 | 304 | 10 | 284 | 1.99e-29 | 114 |
| MsG0180002474.01.T01 | MTR_3g061320 | 29.592 | 294 | 173 | 10 | 21 | 304 | 10 | 279 | 3.37e-29 | 113 |
| MsG0180002474.01.T01 | MTR_6g061070 | 27.164 | 335 | 210 | 10 | 10 | 316 | 5 | 333 | 5.38e-29 | 116 |
| MsG0180002474.01.T01 | MTR_1g035460 | 28.526 | 312 | 168 | 10 | 39 | 313 | 2 | 295 | 5.42e-29 | 115 |
| MsG0180002474.01.T01 | MTR_7g050710 | 28.169 | 284 | 189 | 6 | 21 | 290 | 11 | 293 | 2.67e-28 | 112 |
| MsG0180002474.01.T01 | MTR_3g061370 | 29.530 | 298 | 179 | 11 | 18 | 304 | 4 | 281 | 4.02e-28 | 110 |
| MsG0180002474.01.T01 | MTR_1g035640 | 30.325 | 277 | 176 | 9 | 32 | 303 | 14 | 278 | 2.38e-27 | 111 |
| MsG0180002474.01.T01 | MTR_1g035570 | 30.208 | 288 | 173 | 9 | 32 | 298 | 14 | 294 | 2.74e-27 | 110 |
| MsG0180002474.01.T01 | MTR_3g061340 | 29.787 | 282 | 166 | 12 | 23 | 297 | 12 | 268 | 1.56e-26 | 106 |
| MsG0180002474.01.T01 | MTR_1g108780 | 25.862 | 290 | 188 | 8 | 39 | 309 | 13 | 294 | 3.06e-26 | 108 |
| MsG0180002474.01.T01 | MTR_7g050580 | 27.437 | 277 | 183 | 5 | 21 | 290 | 11 | 276 | 4.64e-26 | 105 |
| MsG0180002474.01.T01 | MTR_8g103940 | 27.010 | 311 | 201 | 10 | 21 | 313 | 37 | 339 | 5.70e-26 | 108 |
| MsG0180002474.01.T01 | MTR_1g035620 | 29.965 | 287 | 156 | 10 | 23 | 292 | 9 | 267 | 2.14e-25 | 105 |
| MsG0180002474.01.T01 | MTR_3g061330 | 28.571 | 245 | 151 | 8 | 21 | 259 | 10 | 236 | 1.14e-24 | 100 |
| MsG0180002474.01.T01 | MTR_1g050845 | 26.812 | 276 | 167 | 7 | 23 | 292 | 9 | 255 | 6.05e-22 | 97.1 |
| MsG0180002474.01.T01 | MTR_7g050590 | 27.715 | 267 | 176 | 6 | 39 | 290 | 2 | 266 | 1.91e-21 | 92.8 |
| MsG0180002474.01.T01 | MTR_1g033740 | 34.320 | 169 | 97 | 6 | 17 | 177 | 16 | 178 | 1.37e-20 | 88.2 |
| MsG0180002474.01.T01 | MTR_3g061290 | 38.000 | 150 | 81 | 7 | 21 | 161 | 10 | 156 | 4.81e-20 | 87.0 |
| MsG0180002474.01.T01 | MTR_1g035480 | 34.043 | 141 | 78 | 4 | 18 | 147 | 12 | 148 | 1.08e-19 | 85.5 |
| MsG0180002474.01.T01 | MTR_1g035510 | 31.132 | 212 | 126 | 6 | 39 | 239 | 2 | 204 | 2.25e-19 | 85.5 |
| MsG0180002474.01.T01 | MTR_5g070440 | 25.503 | 298 | 175 | 9 | 13 | 304 | 11 | 267 | 3.45e-19 | 86.3 |
| MsG0180002474.01.T01 | MTR_1g035500 | 32.738 | 168 | 92 | 6 | 17 | 173 | 19 | 176 | 8.75e-19 | 83.2 |
| MsG0180002474.01.T01 | MTR_3g005490 | 25.987 | 304 | 153 | 12 | 15 | 304 | 13 | 258 | 3.01e-18 | 83.2 |
| MsG0180002474.01.T01 | MTR_1g021360 | 26.936 | 297 | 168 | 13 | 21 | 290 | 182 | 456 | 1.24e-17 | 83.6 |
| MsG0180002474.01.T01 | MTR_1g035650 | 31.073 | 177 | 112 | 5 | 23 | 195 | 9 | 179 | 7.39e-17 | 78.2 |
| MsG0180002474.01.T01 | MTR_1g035470 | 31.544 | 149 | 79 | 5 | 39 | 177 | 2 | 137 | 1.91e-16 | 75.5 |
| MsG0180002474.01.T01 | MTR_3g005480 | 23.667 | 300 | 166 | 10 | 17 | 306 | 15 | 261 | 3.16e-16 | 77.8 |
| MsG0180002474.01.T01 | MTR_3g005460 | 23.684 | 304 | 161 | 9 | 6 | 302 | 8 | 247 | 8.95e-16 | 78.2 |
| MsG0180002474.01.T01 | MTR_3g005460 | 22.924 | 301 | 175 | 9 | 21 | 306 | 260 | 518 | 3.25e-13 | 70.5 |
| MsG0180002474.01.T01 | MTR_1g021380 | 26.733 | 303 | 185 | 11 | 21 | 290 | 20 | 318 | 1.76e-15 | 76.6 |
| MsG0180002474.01.T01 | MTR_1g021400 | 23.653 | 334 | 168 | 13 | 21 | 290 | 28 | 338 | 1.64e-14 | 73.9 |
| MsG0180002474.01.T01 | MTR_1g021435 | 24.316 | 329 | 184 | 14 | 21 | 290 | 20 | 342 | 2.19e-14 | 73.6 |
| MsG0180002474.01.T01 | MTR_3g005420 | 24.172 | 302 | 181 | 10 | 10 | 304 | 275 | 535 | 3.18e-13 | 70.5 |
| MsG0180002474.01.T01 | MTR_3g005495 | 30.189 | 159 | 99 | 3 | 22 | 169 | 242 | 399 | 1.51e-12 | 68.6 |
| MsG0180002474.01.T01 | MTR_1g021410 | 24.451 | 319 | 184 | 14 | 21 | 290 | 21 | 331 | 2.60e-11 | 64.3 |
| MsG0180002474.01.T01 | MTR_7g050640 | 34.314 | 102 | 66 | 1 | 22 | 123 | 12 | 112 | 6.54e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002474.01.T01 | AT3G18990 | 25.978 | 358 | 199 | 11 | 23 | 321 | 6 | 356 | 1.40e-21 | 94.4 |
| MsG0180002474.01.T01 | AT3G18990 | 25.455 | 330 | 185 | 9 | 23 | 297 | 6 | 329 | 5.51e-21 | 92.4 |
| MsG0180002474.01.T01 | AT3G18960 | 33.628 | 113 | 74 | 1 | 11 | 123 | 18 | 129 | 3.68e-15 | 73.6 |
| MsG0180002474.01.T01 | AT3G18960 | 33.628 | 113 | 74 | 1 | 11 | 123 | 18 | 129 | 4.58e-15 | 73.2 |
| MsG0180002474.01.T01 | AT4G33280 | 23.810 | 294 | 186 | 7 | 36 | 304 | 36 | 316 | 1.13e-13 | 71.2 |
| MsG0180002474.01.T01 | AT1G49475 | 35.135 | 111 | 70 | 2 | 23 | 133 | 34 | 142 | 1.18e-13 | 68.9 |
| MsG0180002474.01.T01 | AT4G01580 | 32.673 | 101 | 67 | 1 | 23 | 123 | 30 | 129 | 1.72e-13 | 68.6 |
| MsG0180002474.01.T01 | AT3G18960 | 35.294 | 85 | 54 | 1 | 39 | 123 | 9 | 92 | 8.25e-11 | 60.5 |
Find 37 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGAAACCTTAGAGTAAT+TGG | 0.167691 | 1:-38859322 | None:intergenic |
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1:-38860255 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1:+38860340 | MsG0180002474.01.T01:CDS |
| CTCTATCAATGTATGACTTT+TGG | 0.220204 | 1:-38859905 | None:intergenic |
| TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1:-38860451 | None:intergenic |
| CTTCGTCATCACGGGGTAAA+AGG | 0.257683 | 1:+38859593 | MsG0180002474.01.T01:CDS |
| AAGTAGTTGTGATGATATTA+AGG | 0.299219 | 1:+38859809 | MsG0180002474.01.T01:CDS |
| TTCTTACAAACTTTCATAGA+TGG | 0.310675 | 1:-38859631 | None:intergenic |
| TAACAAACCCAATTACTCTA+AGG | 0.340216 | 1:+38859314 | MsG0180002474.01.T01:CDS |
| GTCTTTAATGTGATTGTATT+CGG | 0.340889 | 1:+38859481 | MsG0180002474.01.T01:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1:-38860336 | None:intergenic |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1:-38860406 | None:intergenic |
| TTTCTCTTTGGAAAAGGACT+TGG | 0.399841 | 1:+38860423 | MsG0180002474.01.T01:CDS |
| TGTGTCTTAACAAATTCATT+TGG | 0.404885 | 1:-38860199 | None:intergenic |
| CTTCCCTAGTTTCTCTTGAC+GGG | 0.422598 | 1:-38859528 | None:intergenic |
| TGAATTTGTTAAGACACATA+TGG | 0.433535 | 1:+38860204 | MsG0180002474.01.T01:CDS |
| TCTTCCCTAGTTTCTCTTGA+CGG | 0.433773 | 1:-38859529 | None:intergenic |
| TTGGAAACCTTAGAGTAATT+GGG | 0.442652 | 1:-38859321 | None:intergenic |
| TGAGAATCCTTCGTCATCAC+GGG | 0.459175 | 1:+38859585 | MsG0180002474.01.T01:CDS |
| TACTCTAAGGTTTCCAAACA+TGG | 0.467994 | 1:+38859327 | MsG0180002474.01.T01:CDS |
| AACTTTCTCTAGTTTCTCTA+CGG | 0.479642 | 1:-38858829 | None:intergenic |
| TTGAGAATCCTTCGTCATCA+CGG | 0.526374 | 1:+38859584 | MsG0180002474.01.T01:CDS |
| AATACCCGTCAAGAGAAACT+AGG | 0.533719 | 1:+38859524 | MsG0180002474.01.T01:CDS |
| ATACATTGATAGAGATCGCT+TGG | 0.539899 | 1:+38859914 | MsG0180002474.01.T01:CDS |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1:+38859289 | MsG0180002474.01.T01:CDS |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1:+38860305 | MsG0180002474.01.T01:CDS |
| ATACCCGTCAAGAGAAACTA+GGG | 0.582374 | 1:+38859525 | MsG0180002474.01.T01:CDS |
| TAAGACACATATGGACATGA+TGG | 0.584937 | 1:+38860213 | MsG0180002474.01.T01:CDS |
| GTGATTGTATTCGGTAGATG+TGG | 0.588390 | 1:+38859490 | MsG0180002474.01.T01:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1:+38860301 | MsG0180002474.01.T01:CDS |
| ATGTCTTCTCAAGAGAGTAA+TGG | 0.609709 | 1:+38858858 | MsG0180002474.01.T01:CDS |
| GAATACAATCACATTAAAGA+CGG | 0.610018 | 1:-38859479 | None:intergenic |
| ATTACTCTCTTGAGAAGACA+TGG | 0.618980 | 1:-38858856 | None:intergenic |
| ACACATATGGACATGATGGA+AGG | 0.627742 | 1:+38860217 | MsG0180002474.01.T01:CDS |
| TCTAAGGTTTCCAAACATGG+TGG | 0.644869 | 1:+38859330 | MsG0180002474.01.T01:CDS |
| AAGCGTGAGCATGTGAACAA+TGG | 0.705898 | 1:+38859688 | MsG0180002474.01.T01:CDS |
| GAGAATCCTTCGTCATCACG+GGG | 0.717191 | 1:+38859586 | MsG0180002474.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTTACCTTCAAAATA+AGG | - | Chr1:38860454-38860473 | None:intergenic | 15.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | Chr1:38859763-38859782 | MsG0180002474.01.T01:intron | 15.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | Chr1:38860171-38860190 | MsG0180002474.01.T01:intron | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | Chr1:38860258-38860277 | None:intergenic | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | Chr1:38860339-38860358 | None:intergenic | 20.0% |
| !! | TAAATATGCATTGCAAAATT+TGG | + | Chr1:38858976-38858995 | MsG0180002474.01.T01:intron | 20.0% |
| !! | TTACATATTGTGAAAAATCA+AGG | - | Chr1:38858959-38858978 | None:intergenic | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | Chr1:38860257-38860276 | None:intergenic | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | Chr1:38860047-38860066 | MsG0180002474.01.T01:intron | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | Chr1:38860340-38860359 | MsG0180002474.01.T01:CDS | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | + | Chr1:38859786-38859805 | MsG0180002474.01.T01:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | Chr1:38859435-38859454 | MsG0180002474.01.T01:CDS | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | Chr1:38860257-38860276 | MsG0180002474.01.T01:CDS | 20.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | Chr1:38859809-38859828 | MsG0180002474.01.T01:CDS | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | Chr1:38860013-38860032 | None:intergenic | 25.0% |
| ! | AATGATTGTTCGAATATCAA+CGG | + | Chr1:38859119-38859138 | MsG0180002474.01.T01:intron | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | Chr1:38859997-38860016 | MsG0180002474.01.T01:intron | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | Chr1:38860000-38860019 | None:intergenic | 25.0% |
| ! | GAATACAATCACATTAAAGA+CGG | - | Chr1:38859482-38859501 | None:intergenic | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | Chr1:38860409-38860428 | None:intergenic | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | + | Chr1:38859481-38859500 | MsG0180002474.01.T01:CDS | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | Chr1:38860202-38860221 | None:intergenic | 25.0% |
| ! | TTCTTACAAACTTTCATAGA+TGG | - | Chr1:38859634-38859653 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | - | Chr1:38859284-38859303 | None:intergenic | 25.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | - | Chr1:38859283-38859302 | None:intergenic | 25.0% |
| !! | TATGAAGTTATGTTTTGCAA+TGG | + | Chr1:38859385-38859404 | MsG0180002474.01.T01:CDS | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | Chr1:38859284-38859303 | MsG0180002474.01.T01:CDS | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | Chr1:38860411-38860430 | MsG0180002474.01.T01:CDS | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | + | Chr1:38860204-38860223 | MsG0180002474.01.T01:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | Chr1:38860417-38860436 | MsG0180002474.01.T01:CDS | 25.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | Chr1:38859863-38859882 | MsG0180002474.01.T01:CDS | 30.0% | |
| GACGAATAACCTTAAAAAAG+TGG | - | Chr1:38858887-38858906 | None:intergenic | 30.0% | |
| TAACAAACCCAATTACTCTA+AGG | + | Chr1:38859314-38859333 | MsG0180002474.01.T01:CDS | 30.0% | |
| TTGGAAACCTTAGAGTAATT+GGG | - | Chr1:38859324-38859343 | None:intergenic | 30.0% | |
| TTTGGAAACCTTAGAGTAAT+TGG | - | Chr1:38859325-38859344 | None:intergenic | 30.0% | |
| ! | AACTTTCTCTAGTTTCTCTA+CGG | - | Chr1:38858832-38858851 | None:intergenic | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | + | Chr1:38859389-38859408 | MsG0180002474.01.T01:CDS | 30.0% |
| ! | CTCTATCAATGTATGACTTT+TGG | - | Chr1:38859908-38859927 | None:intergenic | 30.0% |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | - | Chr1:38858916-38858935 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | - | Chr1:38858917-38858936 | None:intergenic | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | Chr1:38860370-38860389 | MsG0180002474.01.T01:CDS | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | Chr1:38859289-38859308 | MsG0180002474.01.T01:CDS | 30.0% |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | Chr1:38859854-38859873 | None:intergenic | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | Chr1:38859348-38859367 | MsG0180002474.01.T01:CDS | 30.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | + | Chr1:38858875-38858894 | MsG0180002474.01.T01:CDS | 30.0% |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | Chr1:38859347-38859366 | MsG0180002474.01.T01:CDS | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | + | Chr1:38860442-38860461 | MsG0180002474.01.T01:CDS | 30.0% |
| AAACAATCTGCACTAACTTG+TGG | + | Chr1:38860301-38860320 | MsG0180002474.01.T01:CDS | 35.0% | |
| ATACATTGATAGAGATCGCT+TGG | + | Chr1:38859914-38859933 | MsG0180002474.01.T01:CDS | 35.0% | |
| ATGTCTTCTCAAGAGAGTAA+TGG | + | Chr1:38858858-38858877 | MsG0180002474.01.T01:CDS | 35.0% | |
| ATTACTCTCTTGAGAAGACA+TGG | - | Chr1:38858859-38858878 | None:intergenic | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | Chr1:38860061-38860080 | None:intergenic | 35.0% | |
| TAAGACACATATGGACATGA+TGG | + | Chr1:38860213-38860232 | MsG0180002474.01.T01:CDS | 35.0% | |
| TACCCTTCAAGAAGAAAAAC+TGG | + | Chr1:38858911-38858930 | MsG0180002474.01.T01:CDS | 35.0% | |
| ! | ACTTTCTTTTCCACCATGTT+TGG | - | Chr1:38859343-38859362 | None:intergenic | 35.0% |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | + | Chr1:38860423-38860442 | MsG0180002474.01.T01:CDS | 35.0% |
| !! | CCTACATAATGGATTGTGAT+TGG | + | Chr1:38860058-38860077 | MsG0180002474.01.T01:intron | 35.0% |
| !! | TACTCTAAGGTTTCCAAACA+TGG | + | Chr1:38859327-38859346 | MsG0180002474.01.T01:CDS | 35.0% |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | + | Chr1:38859278-38859297 | MsG0180002474.01.T01:CDS | 35.0% |
| AATACCCGTCAAGAGAAACT+AGG | + | Chr1:38859524-38859543 | MsG0180002474.01.T01:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | Chr1:38859525-38859544 | MsG0180002474.01.T01:CDS | 40.0% | |
| GTGATTGTATTCGGTAGATG+TGG | + | Chr1:38859490-38859509 | MsG0180002474.01.T01:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | Chr1:38859532-38859551 | None:intergenic | 40.0% | |
| TTGAGAATCCTTCGTCATCA+CGG | + | Chr1:38859584-38859603 | MsG0180002474.01.T01:CDS | 40.0% | |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | Chr1:38860305-38860324 | MsG0180002474.01.T01:CDS | 40.0% |
| ! | ACACATATGGACATGATGGA+AGG | + | Chr1:38860217-38860236 | MsG0180002474.01.T01:CDS | 40.0% |
| ! | TCTAAGGTTTCCAAACATGG+TGG | + | Chr1:38859330-38859349 | MsG0180002474.01.T01:CDS | 40.0% |
| AAGCGTGAGCATGTGAACAA+TGG | + | Chr1:38859688-38859707 | MsG0180002474.01.T01:CDS | 45.0% | |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | Chr1:38859531-38859550 | None:intergenic | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | Chr1:38859692-38859711 | MsG0180002474.01.T01:intron | 45.0% | |
| TGAGAATCCTTCGTCATCAC+GGG | + | Chr1:38859585-38859604 | MsG0180002474.01.T01:CDS | 45.0% | |
| CTTCGTCATCACGGGGTAAA+AGG | + | Chr1:38859593-38859612 | MsG0180002474.01.T01:CDS | 50.0% | |
| GAGAATCCTTCGTCATCACG+GGG | + | Chr1:38859586-38859605 | MsG0180002474.01.T01:CDS | 50.0% | |
| !! | CTTTTACCCCGTGATGACGA+AGG | - | Chr1:38859595-38859614 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 38858822 | 38860483 | 38858822 | ID=MsG0180002474.01;Name=MsG0180002474.01 |
| Chr1 | mRNA | 38858822 | 38860483 | 38858822 | ID=MsG0180002474.01.T01;Parent=MsG0180002474.01;Name=MsG0180002474.01.T01;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|4|0|322 |
| Chr1 | exon | 38858822 | 38858932 | 38858822 | ID=MsG0180002474.01.T01:exon:28128;Parent=MsG0180002474.01.T01 |
| Chr1 | exon | 38859274 | 38859709 | 38859274 | ID=MsG0180002474.01.T01:exon:28129;Parent=MsG0180002474.01.T01 |
| Chr1 | exon | 38859805 | 38859935 | 38859805 | ID=MsG0180002474.01.T01:exon:28130;Parent=MsG0180002474.01.T01 |
| Chr1 | exon | 38860193 | 38860483 | 38860193 | ID=MsG0180002474.01.T01:exon:28131;Parent=MsG0180002474.01.T01 |
| Chr1 | CDS | 38858822 | 38858932 | 38858822 | ID=MsG0180002474.01.T01:cds;Parent=MsG0180002474.01.T01 |
| Chr1 | CDS | 38859274 | 38859709 | 38859274 | ID=MsG0180002474.01.T01:cds;Parent=MsG0180002474.01.T01 |
| Chr1 | CDS | 38859805 | 38859935 | 38859805 | ID=MsG0180002474.01.T01:cds;Parent=MsG0180002474.01.T01 |
| Chr1 | CDS | 38860193 | 38860483 | 38860193 | ID=MsG0180002474.01.T01:cds;Parent=MsG0180002474.01.T01 |
| Gene Sequence |
| Protein sequence |
