AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002967.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002967.01.T01 MTR_1g053800 67.094 234 26 2 15 248 138 320 4.05e-99 292
MsG0180002967.01.T01 MTR_7g093010 37.991 229 82 6 15 241 178 348 3.32e-27 107
MsG0180002967.01.T01 MTR_1g053835 34.946 186 69 4 50 235 254 387 2.13e-19 87.0
MsG0180002967.01.T01 MTR_7g093030 34.066 182 69 3 54 235 212 342 3.71e-18 83.2
MsG0180002967.01.T01 MTR_1g080330 30.570 193 82 4 44 235 165 306 6.54e-17 79.3
MsG0180002967.01.T01 MTR_1g080330 36.220 127 72 2 44 169 165 283 8.00e-17 78.2
MsG0180002967.01.T01 MTR_7g098250 31.188 202 80 6 36 235 249 393 4.98e-16 77.4
MsG0180002967.01.T01 MTR_2g027860 40.496 121 55 3 54 168 49 158 6.87e-15 73.2
MsG0180002967.01.T01 MTR_7g088070 35.593 118 68 1 51 168 47 156 3.71e-14 70.5
MsG0180002967.01.T01 MTR_7g115530 34.746 118 68 2 54 170 218 327 4.98e-13 67.8
MsG0180002967.01.T01 MTR_7g088070 36.066 122 66 3 51 168 47 160 5.83e-13 67.4
MsG0180002967.01.T01 MTR_6g444980 34.328 134 68 3 43 168 24 145 2.65e-12 65.9
MsG0180002967.01.T01 MTR_6g444980 34.328 134 68 3 43 168 24 145 3.35e-12 65.9
MsG0180002967.01.T01 MTR_7g115530 28.415 183 79 4 54 235 218 349 4.03e-12 65.9
MsG0180002967.01.T01 MTR_2g027800 35.878 131 57 6 49 160 34 156 2.73e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002967.01.T01 AT5G06800 32.381 210 83 5 32 236 173 328 6.90e-19 85.1
MsG0180002967.01.T01 AT5G06800 32.195 205 85 3 32 236 173 323 1.32e-18 84.3
MsG0180002967.01.T01 AT4G28610 32.143 196 77 4 41 234 215 356 1.18e-16 79.0
MsG0180002967.01.T01 AT2G01060 38.346 133 64 3 42 168 3 123 1.18e-14 72.4
MsG0180002967.01.T01 AT5G29000 29.630 189 78 5 51 235 228 365 2.25e-13 69.3
MsG0180002967.01.T01 AT5G29000 29.630 189 78 5 51 235 185 322 3.88e-13 68.6
MsG0180002967.01.T01 AT5G29000 29.630 189 78 5 51 235 185 322 3.88e-13 68.6
MsG0180002967.01.T01 AT3G12730 32.824 131 57 3 43 150 12 134 3.85e-12 64.3
MsG0180002967.01.T01 AT3G04450 27.083 192 85 3 54 241 238 378 1.27e-11 64.3
MsG0180002967.01.T01 AT1G79430 32.867 143 66 4 43 163 23 157 1.46e-11 63.9
MsG0180002967.01.T01 AT3G04450 27.083 192 85 3 54 241 198 338 1.87e-11 63.5
MsG0180002967.01.T01 AT3G04450 27.083 192 85 3 54 241 198 338 1.87e-11 63.5
MsG0180002967.01.T01 AT3G13040 36.301 146 75 6 42 180 229 363 2.15e-11 63.5
MsG0180002967.01.T01 AT3G13040 36.301 146 75 6 42 180 229 363 2.15e-11 63.5
MsG0180002967.01.T01 AT3G13040 36.301 146 75 6 42 180 229 363 2.15e-11 63.5

Find 28 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATATATAAACTTACTTTC+TGG 0.203687 1:+53988245 None:intergenic
AGTGAGTTTCCCTCTTGTTC+TGG 0.315905 1:-53989375 MsG0180002967.01.T01:intron
GTGATTCTTCTATTTGCATT+TGG 0.336254 1:+53987039 None:intergenic
AATATATAAACTTACTTTCT+GGG 0.349821 1:+53988246 None:intergenic
TATCTTAAAATCAGAGTTGC+TGG 0.350060 1:+53988348 None:intergenic
TCATGTCAAAAGTCATTTGC+AGG 0.353917 1:-53988091 MsG0180002967.01.T01:intron
ACAAAAGAAAAGAACCAAAC+AGG 0.442809 1:-53986775 MsG0180002967.01.T01:CDS
ATCATTTGTAGTATAGCCTT+AGG 0.450838 1:+53988138 None:intergenic
TAAGGCTATACTACAAATGA+TGG 0.452684 1:-53988136 MsG0180002967.01.T01:CDS
TACTTTCTGGGCCACCAAGC+TGG 0.476548 1:+53988258 None:intergenic
CACTCGCACAAATGTTTGAA+AGG 0.513505 1:-53987808 MsG0180002967.01.T01:intron
GATGCAGCGAAATTTGCAAC+TGG 0.519384 1:-53986841 MsG0180002967.01.T01:CDS
AGGGTAAAAGAAGATTAAGA+TGG 0.538823 1:-53988318 MsG0180002967.01.T01:CDS
GAGGAAGGGCAGATAACAGA+TGG 0.546455 1:-53987217 MsG0180002967.01.T01:CDS
GAGCAATAAACGACAATTCG+AGG 0.546674 1:-53986991 MsG0180002967.01.T01:CDS
AATCACAGAGGCAAAGCCTA+AGG 0.569399 1:-53988154 MsG0180002967.01.T01:intron
AACTACAACTTGAGGTTGAG+AGG 0.574473 1:-53987013 MsG0180002967.01.T01:CDS
CACCCTCTTACCAGAACAAG+AGG 0.578895 1:+53989365 None:intergenic
AGGTCAGGAATATCTGAGGA+AGG 0.581978 1:-53987232 MsG0180002967.01.T01:intron
GACAAACAATCTTCACCTTG+TGG 0.605075 1:-53988388 MsG0180002967.01.T01:CDS
AAGGCTATACTACAAATGAT+GGG 0.610409 1:-53988135 MsG0180002967.01.T01:CDS
GGTCAGGAATATCTGAGGAA+GGG 0.635377 1:-53987231 MsG0180002967.01.T01:intron
ATCACGACAACTACAACTTG+AGG 0.638258 1:-53987021 MsG0180002967.01.T01:CDS
ATTTAGGTCAGGAATATCTG+AGG 0.645648 1:-53987236 MsG0180002967.01.T01:intron
TATACTACAAATGATGGGTG+TGG 0.647886 1:-53988130 MsG0180002967.01.T01:CDS
AGGAAGGGCAGATAACAGAT+GGG 0.654049 1:-53987216 MsG0180002967.01.T01:CDS
GTTGCAAAATCAAAGCCACA+AGG 0.709667 1:+53988373 None:intergenic
ACCCTCTTACCAGAACAAGA+GGG 0.711077 1:+53989366 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAATGAACAATTAT+TGG + Chr1:53987159-53987178 None:intergenic 10.0%
!! ATTAATTATTAAAAATAGAG+AGG - Chr1:53988587-53988606 MsG0180002967.01.T01:intron 10.0%
!! TTAATTATTAAAAATAGAGA+GGG - Chr1:53988588-53988607 MsG0180002967.01.T01:intron 10.0%
!! TTTAATAAGTAAATATAGTT+TGG + Chr1:53988830-53988849 None:intergenic 10.0%
!!! AGTTTATATATTCATTTTAT+AGG - Chr1:53987927-53987946 MsG0180002967.01.T01:intron 10.0%
!!! ATATTTTATATCAAGAATTA+AGG - Chr1:53989260-53989279 MsG0180002967.01.T01:intron 10.0%
!!! TTTTTTTTTTCAAATATTAG+TGG - Chr1:53988685-53988704 MsG0180002967.01.T01:intron 10.0%
!! AAAACAATATGTATACTAAA+AGG - Chr1:53987351-53987370 MsG0180002967.01.T01:intron 15.0%
!! AAAGAGTCATATAAAAATTA+AGG + Chr1:53987264-53987283 None:intergenic 15.0%
!! AATATATAAACTTACTTTCT+GGG + Chr1:53987919-53987938 None:intergenic 15.0%
!! AATATGATTACAATGAATTT+GGG - Chr1:53987311-53987330 MsG0180002967.01.T01:intron 15.0%
!! CCTAAATTAATATATATATG+AGG + Chr1:53988913-53988932 None:intergenic 15.0%
!! CCTCATATATATATTAATTT+AGG - Chr1:53988910-53988929 MsG0180002967.01.T01:intron 15.0%
!! TATATATATTAATTTAGGTC+AGG - Chr1:53988915-53988934 MsG0180002967.01.T01:intron 15.0%
!! TTAATAATTATTAGCGATAT+GGG - Chr1:53988258-53988277 MsG0180002967.01.T01:CDS 15.0%
!! TTAATATATATATGAGGTTA+AGG + Chr1:53988907-53988926 None:intergenic 15.0%
!! TTCTTGATGTAAAAATAATT+AGG + Chr1:53989204-53989223 None:intergenic 15.0%
!! TTTAATAATTATTAGCGATA+TGG - Chr1:53988257-53988276 MsG0180002967.01.T01:CDS 15.0%
!!! TTCAAAAACTATTTTTTCAA+CGG + Chr1:53987598-53987617 None:intergenic 15.0%
!!! TTTTAGTATACATATTGTTT+TGG + Chr1:53987352-53987371 None:intergenic 15.0%
!! AAATTTGAAGAGTAAGAAAA+AGG + Chr1:53986905-53986924 None:intergenic 20.0%
!! CAATGAATATATCAATAAGA+AGG + Chr1:53989040-53989059 None:intergenic 20.0%
!! CTTCTTATTGATATATTCAT+TGG - Chr1:53989038-53989057 MsG0180002967.01.T01:intron 20.0%
!! GAATATATAAACTTACTTTC+TGG + Chr1:53987920-53987939 None:intergenic 20.0%
!! GAATATGATTACAATGAATT+TGG - Chr1:53987310-53987329 MsG0180002967.01.T01:intron 20.0%
!! TAGAAATTCATGAATAAGTA+GGG - Chr1:53988709-53988728 MsG0180002967.01.T01:intron 20.0%
!! TCTTATCAACACATAATTTA+AGG + Chr1:53989016-53989035 None:intergenic 20.0%
!! TTGTTAAAATGCATTTCATA+AGG + Chr1:53988431-53988450 None:intergenic 20.0%
!!! ATGTTTGTGATTATTTTGTT+TGG - Chr1:53989292-53989311 MsG0180002967.01.T01:intron 20.0%
!!! ATTTTAGTAGAATAATGAAC+AGG + Chr1:53988402-53988421 None:intergenic 20.0%
!!! TATTTTTACATCAAGAATTC+AGG - Chr1:53989207-53989226 MsG0180002967.01.T01:intron 20.0%
! AAACTTCTAAATGGATCATT+GGG + Chr1:53987673-53987692 None:intergenic 25.0%
! AATTAGCAATGGATGAATTT+AGG - Chr1:53986944-53986963 MsG0180002967.01.T01:CDS 25.0%
! ACTATGATAAGACATTTATG+AGG + Chr1:53987734-53987753 None:intergenic 25.0%
! CAAACATTGTTAATTAGCAA+TGG - Chr1:53986933-53986952 MsG0180002967.01.T01:CDS 25.0%
! CATAAATGTCTTATCATAGT+GGG - Chr1:53987734-53987753 MsG0180002967.01.T01:intron 25.0%
! CTAGAAATTCATGAATAAGT+AGG - Chr1:53988708-53988727 MsG0180002967.01.T01:intron 25.0%
! GTTACAAAGAAACTTCTAAA+TGG + Chr1:53987682-53987701 None:intergenic 25.0%
! TAATTGACTACAGTTTCAAT+AGG - Chr1:53987288-53987307 MsG0180002967.01.T01:intron 25.0%
! TCATAAATGTCTTATCATAG+TGG - Chr1:53987733-53987752 MsG0180002967.01.T01:intron 25.0%
! TTATATAAACCATACACTTC+TGG - Chr1:53988865-53988884 MsG0180002967.01.T01:intron 25.0%
! TTTATACTTTACCCTCAAAT+AGG + Chr1:53988138-53988157 None:intergenic 25.0%
!! AAACAATGCTTTTAATATGC+AGG + Chr1:53988758-53988777 None:intergenic 25.0%
!! TAATCATTGATTAATCACAG+AGG - Chr1:53987996-53988015 MsG0180002967.01.T01:intron 25.0%
!! TCTTACTCTTCAAATTTTGT+TGG - Chr1:53986908-53986927 MsG0180002967.01.T01:CDS 25.0%
!! TTTCTGAAAGGAAATTTCAT+GGG + Chr1:53986854-53986873 None:intergenic 25.0%
!!! AGTAGTTTTTGAAGTAACAA+AGG - Chr1:53987637-53987656 MsG0180002967.01.T01:intron 25.0%
!!! AGTTTATTTTCATGAGACAA+TGG - Chr1:53988096-53988115 MsG0180002967.01.T01:CDS 25.0%
!!! CAGGTCAATTAATTTTAAGT+CGG - Chr1:53987510-53987529 MsG0180002967.01.T01:intron 25.0%
!!! GATTTTAAGATAACTGCAAA+GGG - Chr1:53987825-53987844 MsG0180002967.01.T01:CDS 25.0%
!!! TGATTTTAAGATAACTGCAA+AGG - Chr1:53987824-53987843 MsG0180002967.01.T01:CDS 25.0%
!!! TTTGTGATTATTTTGTTTGG+TGG - Chr1:53989295-53989314 MsG0180002967.01.T01:intron 25.0%
!!! TTTTCTGAAAGGAAATTTCA+TGG + Chr1:53986855-53986874 None:intergenic 25.0%
AAGGCTATACTACAAATGAT+GGG - Chr1:53988027-53988046 MsG0180002967.01.T01:intron 30.0%
AATCTTAAATGGTATGACGA+CGG - Chr1:53987540-53987559 MsG0180002967.01.T01:intron 30.0%
AATTTCCTTTCAGAAAACTC+AGG - Chr1:53986858-53986877 MsG0180002967.01.T01:CDS 30.0%
ACAAAAGAAAAGAACCAAAC+AGG - Chr1:53989387-53989406 MsG0180002967.01.T01:CDS 30.0%
AGGGTAAAAGAAGATTAAGA+TGG - Chr1:53987844-53987863 MsG0180002967.01.T01:intron 30.0%
ATATATTCATTGGCACTACA+AGG - Chr1:53989048-53989067 MsG0180002967.01.T01:intron 30.0%
ATATGCATGTACCTATTTGA+GGG - Chr1:53988124-53988143 MsG0180002967.01.T01:CDS 30.0%
ATCATTTGTAGTATAGCCTT+AGG + Chr1:53988027-53988046 None:intergenic 30.0%
GAAACTTCTAAATGGATCAT+TGG + Chr1:53987674-53987693 None:intergenic 30.0%
GATTAAATTAAGCACTAGCT+AGG + Chr1:53987981-53988000 None:intergenic 30.0%
GTAATTCACTTTAATCTGTG+TGG - Chr1:53988376-53988395 MsG0180002967.01.T01:CDS 30.0%
GTGATTCTTCTATTTGCATT+TGG + Chr1:53989126-53989145 None:intergenic 30.0%
TAAGGCTATACTACAAATGA+TGG - Chr1:53988026-53988045 MsG0180002967.01.T01:intron 30.0%
TATATGCATGTACCTATTTG+AGG - Chr1:53988123-53988142 MsG0180002967.01.T01:CDS 30.0%
TATCTTAAAATCAGAGTTGC+TGG + Chr1:53987817-53987836 None:intergenic 30.0%
TTATATGTTTCGTGTCGTAT+CGG + Chr1:53988218-53988237 None:intergenic 30.0%
! AGCTTTGATGTTAGATATGT+CGG - Chr1:53987110-53987129 MsG0180002967.01.T01:intron 30.0%
! AGTTTGATTTCACATCGATA+AGG + Chr1:53987206-53987225 None:intergenic 30.0%
! ATGACTTTTGACATGAGAAA+TGG + Chr1:53988067-53988086 None:intergenic 30.0%
!! TATTATTTTGTCAACCAGCT+TGG - Chr1:53987890-53987909 MsG0180002967.01.T01:intron 30.0%
!!! CTATCGTTTGATTTTTTCAG+CGG + Chr1:53987573-53987592 None:intergenic 30.0%
!!! TTGTTTTGGCAAAGTACAAA+TGG + Chr1:53987338-53987357 None:intergenic 30.0%
AAACTATTCCAGCAATCGTT+CGG - Chr1:53987445-53987464 MsG0180002967.01.T01:intron 35.0%
AGACATTTATGAGGCAGTTT+AGG + Chr1:53987725-53987744 None:intergenic 35.0%
ATAGAGAGGGAAAATGTGAA+AGG - Chr1:53988601-53988620 MsG0180002967.01.T01:intron 35.0%
ATTTAGGTCAGGAATATCTG+AGG - Chr1:53988926-53988945 MsG0180002967.01.T01:intron 35.0%
ATTTCACATCGATAAGGTTG+AGG + Chr1:53987200-53987219 None:intergenic 35.0%
TATAAAGCACAAACACTCCT+CGG - Chr1:53988152-53988171 MsG0180002967.01.T01:intron 35.0%
TCATGTCAAAAGTCATTTGC+AGG - Chr1:53988071-53988090 MsG0180002967.01.T01:intron 35.0%
TCGGCTTAACCAATCTTAAA+TGG - Chr1:53987529-53987548 MsG0180002967.01.T01:intron 35.0%
TCTATATCATGTTCCGCATT+GGG + Chr1:53986997-53987016 None:intergenic 35.0%
TCTATTTGCATTTGGCTACA+AGG + Chr1:53989118-53989137 None:intergenic 35.0%
TGTATAGATGTATCCCAATG+CGG - Chr1:53986981-53987000 MsG0180002967.01.T01:CDS 35.0%
TTCTATATCATGTTCCGCAT+TGG + Chr1:53986998-53987017 None:intergenic 35.0%
! AATCACCTGAGTTTTCTGAA+AGG + Chr1:53986866-53986885 None:intergenic 35.0%
! ACTTACTTACCAGAAGTGTA+TGG + Chr1:53988877-53988896 None:intergenic 35.0%
! CTTATGTTGATGAATCAGTG+TGG + Chr1:53988550-53988569 None:intergenic 35.0%
! GTCGTCATACCATTTAAGAT+TGG + Chr1:53987541-53987560 None:intergenic 35.0%
! TTTAGAGCAATTTCAGCAGT+GGG + Chr1:53987427-53987446 None:intergenic 35.0%
!! TATACTACAAATGATGGGTG+TGG - Chr1:53988032-53988051 MsG0180002967.01.T01:intron 35.0%
!!! TGTTGGACATCTTTTAAAGC+AGG - Chr1:53987491-53987510 MsG0180002967.01.T01:intron 35.0%
!!! TTTTAGAGCAATTTCAGCAG+TGG + Chr1:53987428-53987447 None:intergenic 35.0%
AACTACAACTTGAGGTTGAG+AGG - Chr1:53989149-53989168 MsG0180002967.01.T01:intron 40.0%
ACCAATGAACTATACTCGAG+AGG - Chr1:53988803-53988822 MsG0180002967.01.T01:intron 40.0%
AGAGGGAAAATGTGAAAGGA+AGG - Chr1:53988605-53988624 MsG0180002967.01.T01:intron 40.0%
ATCACGACAACTACAACTTG+AGG - Chr1:53989141-53989160 MsG0180002967.01.T01:intron 40.0%
ATTTCATGGGACTTCTGATC+TGG + Chr1:53986841-53986860 None:intergenic 40.0%
CAAGGATGGAGTACGAAATT+TGG + Chr1:53989100-53989119 None:intergenic 40.0%
CACTCGCACAAATGTTTGAA+AGG - Chr1:53988354-53988373 MsG0180002967.01.T01:CDS 40.0%
GACAAACAATCTTCACCTTG+TGG - Chr1:53987774-53987793 MsG0180002967.01.T01:intron 40.0%
GAGCAATAAACGACAATTCG+AGG - Chr1:53989171-53989190 MsG0180002967.01.T01:intron 40.0%
GTTGCAAAATCAAAGCCACA+AGG + Chr1:53987792-53987811 None:intergenic 40.0%
TAGCGGGAGTTAATTGTTGT+TGG - Chr1:53987474-53987493 MsG0180002967.01.T01:intron 40.0%
TCCTCTCGAGTATAGTTCAT+TGG + Chr1:53988807-53988826 None:intergenic 40.0%
TTTCATGGGACTTCTGATCT+GGG + Chr1:53986840-53986859 None:intergenic 40.0%
TTTGCATTTGGCTACAAGGA+TGG + Chr1:53989114-53989133 None:intergenic 40.0%
! ATGCTTTTAATATGCAGGCG+CGG + Chr1:53988753-53988772 None:intergenic 40.0%
! TATTTTGTCAACCAGCTTGG+TGG - Chr1:53987893-53987912 MsG0180002967.01.T01:intron 40.0%
! TTCTTTGTTTGTCGAAGTCG+CGG - Chr1:53987230-53987249 MsG0180002967.01.T01:intron 40.0%
!! ATCGGTCATTTTCTCCTGTT+TGG + Chr1:53989404-53989423 None:intergenic 40.0%
!! GGATTAGAAGTGTCCTGTAT+CGG - Chr1:53988173-53988192 MsG0180002967.01.T01:intron 40.0%
AATCACAGAGGCAAAGCCTA+AGG - Chr1:53988008-53988027 MsG0180002967.01.T01:intron 45.0%
ACCCTCTTACCAGAACAAGA+GGG + Chr1:53986799-53986818 None:intergenic 45.0%
AGGAAGGGCAGATAACAGAT+GGG - Chr1:53988946-53988965 MsG0180002967.01.T01:intron 45.0%
AGGTCAGGAATATCTGAGGA+AGG - Chr1:53988930-53988949 MsG0180002967.01.T01:intron 45.0%
AGTGAGTTTCCCTCTTGTTC+TGG - Chr1:53986787-53986806 MsG0180002967.01.T01:CDS 45.0%
GATGCAGCGAAATTTGCAAC+TGG - Chr1:53989321-53989340 MsG0180002967.01.T01:intron 45.0%
GGAAGGTTTGCAAGTAGAGA+AGG - Chr1:53988622-53988641 MsG0180002967.01.T01:intron 45.0%
GGTCAGGAATATCTGAGGAA+GGG - Chr1:53988931-53988950 MsG0180002967.01.T01:intron 45.0%
TACAGGACACTTCTAATCCG+AGG + Chr1:53988172-53988191 None:intergenic 45.0%
TAGAAAAGCCGAACGATTGC+TGG + Chr1:53987456-53987475 None:intergenic 45.0%
TCCCTCTTGTTCTGGTAAGA+GGG - Chr1:53986795-53986814 MsG0180002967.01.T01:CDS 45.0%
TTCATGGGACTTCTGATCTG+GGG + Chr1:53986839-53986858 None:intergenic 45.0%
TTCCCTCTTGTTCTGGTAAG+AGG - Chr1:53986794-53986813 MsG0180002967.01.T01:CDS 45.0%
! CAATCGTTCGGCTTTTCTAG+CGG - Chr1:53987457-53987476 MsG0180002967.01.T01:intron 45.0%
! TGCTTTTAATATGCAGGCGC+GGG + Chr1:53988752-53988771 None:intergenic 45.0%
!! AATCGTTCGGCTTTTCTAGC+GGG - Chr1:53987458-53987477 MsG0180002967.01.T01:intron 45.0%
!! AAAAAAAAAAAAAAAATTCA+TGG + Chr1:53988670-53988689 None:intergenic 5.0%
!! ATATAATTATACTTAAATTA+TGG - Chr1:53988232-53988251 MsG0180002967.01.T01:intron 5.0%
!! TATTATATCATAAAAATAAA+TGG - Chr1:53987084-53987103 MsG0180002967.01.T01:intron 5.0%
ATACGACACGTGTCCGATAC+AGG + Chr1:53988189-53988208 None:intergenic 50.0%
CACCCTCTTACCAGAACAAG+AGG + Chr1:53986800-53986819 None:intergenic 50.0%
GAGGAAGGGCAGATAACAGA+TGG - Chr1:53988945-53988964 MsG0180002967.01.T01:intron 50.0%
TTGTTTGTCGAAGTCGCGGT+GGG - Chr1:53987234-53987253 MsG0180002967.01.T01:intron 50.0%
TTTGTTTGTCGAAGTCGCGG+TGG - Chr1:53987233-53987252 MsG0180002967.01.T01:intron 50.0%
! GCTTTTAATATGCAGGCGCG+GGG + Chr1:53988751-53988770 None:intergenic 50.0%
! TTGTTCTGGTAAGAGGGTGC+TGG - Chr1:53986801-53986820 MsG0180002967.01.T01:CDS 50.0%
AGGCGCGGGGTTTCAAACTT+TGG + Chr1:53988738-53988757 None:intergenic 55.0%
TACTTTCTGGGCCACCAAGC+TGG + Chr1:53987907-53987926 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 53986746 53989438 53986746 ID=MsG0180002967.01;Name=MsG0180002967.01
Chr1 mRNA 53986746 53989438 53986746 ID=MsG0180002967.01.T01;Parent=MsG0180002967.01;Name=MsG0180002967.01.T01;_AED=0.19;_eAED=0.35;_QI=0|0|0|1|0|0|6|0|248
Chr1 exon 53989376 53989438 53989376 ID=MsG0180002967.01.T01:exon:2829;Parent=MsG0180002967.01.T01
Chr1 exon 53988236 53988431 53988236 ID=MsG0180002967.01.T01:exon:2828;Parent=MsG0180002967.01.T01
Chr1 exon 53988092 53988168 53988092 ID=MsG0180002967.01.T01:exon:2827;Parent=MsG0180002967.01.T01
Chr1 exon 53987809 53987848 53987809 ID=MsG0180002967.01.T01:exon:2826;Parent=MsG0180002967.01.T01
Chr1 exon 53987193 53987247 53987193 ID=MsG0180002967.01.T01:exon:2825;Parent=MsG0180002967.01.T01
Chr1 exon 53986746 53987061 53986746 ID=MsG0180002967.01.T01:exon:2824;Parent=MsG0180002967.01.T01
Chr1 CDS 53989376 53989438 53989376 ID=MsG0180002967.01.T01:cds;Parent=MsG0180002967.01.T01
Chr1 CDS 53988236 53988431 53988236 ID=MsG0180002967.01.T01:cds;Parent=MsG0180002967.01.T01
Chr1 CDS 53988092 53988168 53988092 ID=MsG0180002967.01.T01:cds;Parent=MsG0180002967.01.T01
Chr1 CDS 53987809 53987848 53987809 ID=MsG0180002967.01.T01:cds;Parent=MsG0180002967.01.T01
Chr1 CDS 53987193 53987247 53987193 ID=MsG0180002967.01.T01:cds;Parent=MsG0180002967.01.T01
Chr1 CDS 53986746 53987061 53986746 ID=MsG0180002967.01.T01:cds;Parent=MsG0180002967.01.T01
Gene Sequence

>MsG0180002967.01.T01

ATGTCTAGCAGTGAAGATGTATTTCTTCTTGTGAAAAGTGTAGTGAGTTTCCCTCTTGTTCTGTGGGAATCATGTACAAAGCAAGACAAACAATCTTCACCTTGTGGCTTTGATTTTGCAACATCCAGCAACTCTGATTTTAAGATAACTGCAAAGGGTAAAAGAAGATTAAGATGGACAAAAGAATTGAATGAGTCATTTATTATTTTGTCAACCAGCTTGGTGGCCCAGAAAGTAAGTTTATATATTCATTTTATAGAGGCAAAGCCTAAGGCTATACTACAAATGATGGGTGTGGATGTGTTGACCATTTCTCATGTCAAAAGTCATTTGCAGAAATATCGTTCTTACATACACTCGCACAAATGTTTGAAAGGAATATCTGAGGAAGGGCAGATAACAGATGGGATTAATGAGCTTCAAGTTAAAATCCAAATGCAAATAGAAGAATCACGACAACTACAACTTGAGGTTGAGAGGAGCAATAAACGACAATTCGAGGTATATTACCTAATTATTTTTACATCAAGAATTCAGGAAACACTGTATGTTTTTAATATTCTACATTATATTTTATATCAAGAATTAAGGAAATATTATATGTTTGTGATTATTTTGTTTGGTGGTCAGATGCAGCGAAATTTGCAACTGGTGATTGAACAGCAGAAGAAGCAGCTCAAGTTAATGTTAGATCAACAAAAGAAAAGAACCAAACAGGAGAAAATGACCGATTTAAGACGAAAATGA
Protein sequence

>MsG0180002967.01.T01

MSSSEDVFLLVKSVVSFPLVLWESCTKQDKQSSPCGFDFATSSNSDFKITAKGKRRLRWTKELNESFIILSTSLVAQKVSLYIHFIEAKPKAILQMMGVDVLTISHVKSHLQKYRSYIHSHKCLKGISEEGQITDGINELQVKIQMQIEESRQLQLEVERSNKRQFEVYYLIIFTSRIQETLYVFNILHYILYQELRKYYMFVIILFGGQMQRNLQLVIEQQKKQLKLMLDQQKKRTKQEKMTDLRRK*