AlfalfaGEDB | MsG0180003002.01

M. sativa cultivar ZhongmuNo.1 / MsG0180003002.01

KEGG: -
GO: GO:0003677 GO:0046983
PFAM: PF00319

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003002.01.T02	XP_013467688.1	93.75	80	5	0	1	80	90	169	2.68E-43	148
MsG0180003002.01.T01	XP_013467688.1	91.667	168	14	0	11	178	2	169	1.38E-105	310

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003002.01.T01	O64703	42.353	170	88	4	11	170	2	171	3.11E-33	119

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003002.01.T01	A0A072VUD5	91.667	168	14	0	11	178	2	169	6.58e-106	310
MsG0180003002.01.T02	A0A072VUD5	93.750	80	5	0	1	80	90	169	1.28e-43	148

TFs/TRs:

Gene ID	Type	Classification
MsG0180003002.01.T01	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003002.01.T02	MTR_1g054265	93.750	80	5	0	1	80	90	169	3.24e-47	148
MsG0180003002.01.T02	MTR_1g063160	79.747	79	16	0	1	79	90	168	8.82e-40	129
MsG0180003002.01.T02	MTR_1g047550	78.481	79	17	0	1	79	90	168	1.25e-38	126
MsG0180003002.01.T02	MTR_4g131030	80.000	80	16	0	1	80	107	186	1.12e-37	125
MsG0180003002.01.T02	MTR_8g079502	76.923	78	18	0	1	78	90	167	1.81e-35	118
MsG0180003002.01.T02	MTR_8g051580	47.436	78	41	0	2	79	91	168	5.00e-19	76.6
MsG0180003002.01.T02	MTR_8g046350	43.038	79	42	1	1	79	87	162	1.11e-12	59.7
MsG0180003002.01.T01	MTR_1g054265	91.667	168	14	0	11	178	2	169	1.67e-109	310
MsG0180003002.01.T01	MTR_1g063160	77.246	167	38	0	11	177	2	168	7.27e-93	268
MsG0180003002.01.T01	MTR_1g047550	76.048	167	40	0	11	177	2	168	5.75e-90	261
MsG0180003002.01.T01	MTR_8g079502	75.301	166	41	0	11	176	2	167	1.21e-86	252
MsG0180003002.01.T01	MTR_4g131030	68.108	185	42	2	11	178	2	186	1.88e-84	248
MsG0180003002.01.T01	MTR_8g051580	56.886	167	72	0	11	177	2	168	4.48e-64	195
MsG0180003002.01.T01	MTR_8g046350	50.299	167	77	3	11	177	2	162	1.65e-51	162
MsG0180003002.01.T01	MTR_4g094632	38.037	163	89	2	11	173	2	152	1.56e-25	96.7
MsG0180003002.01.T01	MTR_3g080940	40.299	134	68	2	11	137	9	137	3.96e-25	96.7
MsG0180003002.01.T01	MTR_3g052870	38.298	141	84	2	8	145	6	146	1.16e-24	95.9
MsG0180003002.01.T01	MTR_1g106070	44.231	104	56	1	8	109	6	109	1.65e-24	94.4
MsG0180003002.01.T01	MTR_1g105920	44.231	104	56	1	8	109	6	109	1.09e-23	93.6
MsG0180003002.01.T01	MTR_1g012570	38.168	131	78	3	8	136	6	135	7.95e-23	91.7
MsG0180003002.01.T01	MTR_3g052920	54.167	72	33	0	8	79	6	77	7.99e-23	91.3
MsG0180003002.01.T01	MTR_1g105910	43.269	104	57	1	8	109	6	109	1.20e-22	90.9
MsG0180003002.01.T01	MTR_1g108510	40.385	104	60	1	8	109	6	109	8.21e-22	88.6
MsG0180003002.01.T01	MTR_0121s0100	40.385	104	60	1	8	109	6	109	1.18e-21	85.9
MsG0180003002.01.T01	MTR_2g030740	54.167	72	33	0	8	79	6	77	1.19e-21	88.6
MsG0180003002.01.T01	MTR_5g045560	53.521	71	33	0	11	81	9	79	1.32e-21	88.2
MsG0180003002.01.T01	MTR_3g030770	41.584	101	57	1	11	109	9	109	1.55e-21	87.8
MsG0180003002.01.T01	MTR_1g077360	40.385	104	60	1	8	109	6	109	4.20e-21	87.0
MsG0180003002.01.T01	MTR_2g093190	41.346	104	59	1	8	109	6	109	4.48e-21	86.7
MsG0180003002.01.T01	MTR_8g043650	41.346	104	59	1	8	109	6	109	5.46e-21	86.7
MsG0180003002.01.T01	MTR_0121s0080	39.669	121	68	2	8	126	6	123	5.96e-21	86.7
MsG0180003002.01.T01	MTR_4g094638	45.000	100	50	2	11	106	2	100	7.29e-21	85.1
MsG0180003002.01.T01	MTR_2g105290	49.333	75	38	0	6	80	7	81	1.87e-20	84.0
MsG0180003002.01.T01	MTR_5g053390	45.783	83	45	0	8	90	6	88	2.53e-20	84.7
MsG0180003002.01.T01	MTR_3g030780	39.091	110	65	1	11	118	9	118	5.03e-20	81.6
MsG0180003002.01.T01	MTR_1g108580	39.604	101	59	1	11	109	9	109	5.51e-20	84.0
MsG0180003002.01.T01	MTR_1g075600	50.000	72	36	0	8	79	6	77	1.03e-19	83.2
MsG0180003002.01.T01	MTR_8g086290	40.517	116	62	3	6	119	7	117	1.23e-19	81.6
MsG0180003002.01.T01	MTR_2g085250	47.297	74	39	0	8	81	6	79	3.59e-19	81.6
MsG0180003002.01.T01	MTR_2g085280	47.297	74	39	0	8	81	6	79	3.63e-19	81.6
MsG0180003002.01.T01	MTR_1g105905	66.038	53	18	0	27	79	8	60	3.11e-18	79.0
MsG0180003002.01.T01	MTR_5g055100	45.833	72	39	0	8	79	6	77	3.14e-18	79.3
MsG0180003002.01.T01	MTR_7g028448	56.140	57	25	0	23	79	24	80	3.20e-18	77.8
MsG0180003002.01.T01	MTR_4g036915	56.140	57	25	0	23	79	24	80	3.20e-18	77.8
MsG0180003002.01.T01	MTR_7g062350	62.069	58	22	0	22	79	32	89	9.10e-18	78.2
MsG0180003002.01.T01	MTR_0003s0590	47.143	70	37	0	11	80	2	71	3.31e-17	77.0
MsG0180003002.01.T01	MTR_4g127140	48.000	75	39	0	6	80	7	81	1.13e-15	71.6
MsG0180003002.01.T01	MTR_8g033220	41.667	96	52	2	10	105	3	94	1.22e-15	72.0
MsG0180003002.01.T01	MTR_5g066960	50.847	59	29	0	11	69	2	60	1.46e-15	67.8
MsG0180003002.01.T01	MTR_2g009890	38.532	109	66	1	11	119	2	109	1.50e-15	72.8
MsG0180003002.01.T01	MTR_8g033220	41.667	96	52	2	10	105	3	94	1.64e-15	72.0
MsG0180003002.01.T01	MTR_3g452380	38.835	103	59	1	11	109	17	119	2.08e-15	72.0
MsG0180003002.01.T01	MTR_3g067875	60.417	48	19	0	27	74	8	55	3.14e-15	67.4
MsG0180003002.01.T01	MTR_2g017865	47.945	73	38	0	8	80	14	86	3.36e-15	71.6
MsG0180003002.01.T01	MTR_7g075870	48.529	68	33	1	11	78	4	69	3.46e-15	70.9
MsG0180003002.01.T01	MTR_1g108500	56.667	60	24	1	27	84	113	172	3.55e-15	72.4
MsG0180003002.01.T01	MTR_4g102530	47.826	69	34	1	10	78	3	69	3.57e-15	70.5
MsG0180003002.01.T01	MTR_8g033270	47.059	68	36	0	11	78	2	69	5.38e-15	70.9
MsG0180003002.01.T01	MTR_5g066180	46.154	65	35	0	14	78	5	69	6.20e-15	70.5
MsG0180003002.01.T01	MTR_7g075870	56.140	57	23	1	11	67	4	58	6.28e-15	70.1
MsG0180003002.01.T01	MTR_3g005530	45.714	70	38	0	11	80	2	71	6.47e-15	70.1
MsG0180003002.01.T01	MTR_1g053070	45.588	68	37	0	11	78	2	69	9.49e-15	70.1
MsG0180003002.01.T01	MTR_8g087860	47.143	70	37	0	11	80	18	87	1.53e-14	69.7
MsG0180003002.01.T01	MTR_1g101970	44.118	68	38	0	11	78	2	69	5.99e-14	67.0
MsG0180003002.01.T01	MTR_5g031000	44.118	68	38	0	11	78	2	69	1.06e-13	67.0
MsG0180003002.01.T01	MTR_5g031000	44.118	68	38	0	11	78	2	69	1.13e-13	67.0
MsG0180003002.01.T01	MTR_3g109930	32.540	126	70	3	11	131	2	117	1.47e-13	65.5
MsG0180003002.01.T01	MTR_4g109830	37.079	89	53	2	11	98	2	88	1.49e-13	66.6
MsG0180003002.01.T01	MTR_2g461710	48.214	56	29	0	11	66	2	57	1.58e-13	62.8
MsG0180003002.01.T01	MTR_5g021270	45.902	61	33	0	11	71	2	62	1.66e-13	66.6
MsG0180003002.01.T01	MTR_5g021270	45.902	61	33	0	11	71	2	62	1.70e-13	66.6
MsG0180003002.01.T01	MTR_5g046790	48.214	56	29	0	11	66	2	57	1.92e-13	65.9
MsG0180003002.01.T01	MTR_3g067910	52.830	53	25	0	27	79	6	58	2.98e-13	63.2
MsG0180003002.01.T01	MTR_3g113030	48.276	58	30	0	14	71	5	62	3.48e-13	65.5
MsG0180003002.01.T01	MTR_4g093970	43.750	64	36	0	14	77	31	94	4.01e-13	65.5
MsG0180003002.01.T01	MTR_1g041615	65.909	44	15	0	24	67	19	62	4.28e-13	63.5
MsG0180003002.01.T01	MTR_1g038300	35.955	89	55	1	11	97	2	90	4.81e-13	65.5
MsG0180003002.01.T01	MTR_5g046870	48.214	56	29	0	11	66	2	57	5.28e-13	62.8
MsG0180003002.01.T01	MTR_7g016630	30.088	113	73	2	11	122	2	109	6.02e-13	65.5
MsG0180003002.01.T01	MTR_1g029670	34.615	78	49	1	11	86	2	79	1.05e-12	63.5
MsG0180003002.01.T01	MTR_5g032150	50.943	53	26	0	14	66	5	57	1.06e-12	64.3
MsG0180003002.01.T01	MTR_8g066260	47.368	57	30	0	11	67	2	58	1.12e-12	64.3
MsG0180003002.01.T01	MTR_5g032520	50.943	53	26	0	14	66	5	57	1.26e-12	63.9
MsG0180003002.01.T01	MTR_7g016600	50.000	56	28	0	11	66	2	57	1.28e-12	64.3
MsG0180003002.01.T01	MTR_4g093030	49.123	57	29	0	11	67	2	58	1.59e-12	62.4
MsG0180003002.01.T01	MTR_3g084980	51.786	56	27	0	11	66	2	57	2.27e-12	63.5
MsG0180003002.01.T01	MTR_3g088615	37.500	64	40	0	11	74	2	65	2.39e-12	62.4
MsG0180003002.01.T01	MTR_7g075850	36.082	97	57	2	11	102	2	98	2.39e-12	63.5
MsG0180003002.01.T01	MTR_8g097090	50.000	56	28	0	11	66	2	57	3.26e-12	63.2
MsG0180003002.01.T01	MTR_6g015975	50.000	56	28	0	11	66	2	57	3.83e-12	63.2
MsG0180003002.01.T01	MTR_4g084740	38.272	81	49	1	11	90	2	82	4.76e-12	63.5
MsG0180003002.01.T01	MTR_4g036050	42.857	70	39	1	13	81	4	73	7.03e-12	61.2
MsG0180003002.01.T01	MTR_4g036050	42.857	70	39	1	13	81	4	73	7.17e-12	61.2
MsG0180003002.01.T01	MTR_4g036050	42.857	70	39	1	13	81	4	73	7.56e-12	61.6
MsG0180003002.01.T01	MTR_6g464720	47.368	57	30	0	11	67	2	58	8.04e-12	62.0
MsG0180003002.01.T01	MTR_8g022970	32.773	119	76	1	13	131	20	134	8.49e-12	61.2
MsG0180003002.01.T01	MTR_3g102570	40.278	72	42	1	11	81	2	73	8.58e-12	62.8
MsG0180003002.01.T01	MTR_4g036050	42.857	70	39	1	13	81	4	73	8.72e-12	61.2
MsG0180003002.01.T01	MTR_4g109810	48.214	56	29	0	11	66	2	57	9.01e-12	62.0
MsG0180003002.01.T01	MTR_3g067870	42.029	69	39	1	11	78	75	143	1.27e-11	60.1
MsG0180003002.01.T01	MTR_5g041650	40.984	61	36	0	3	63	31	91	2.15e-11	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003002.01.T01	AT2G34440	42.353	170	88	4	11	170	2	171	3.17e-34	119
MsG0180003002.01.T01	AT3G66656	67.647	68	22	0	11	78	2	69	5.08e-29	105
MsG0180003002.01.T01	AT2G24840	41.463	123	66	2	11	130	63	182	1.48e-26	102
MsG0180003002.01.T01	AT5G60440	43.885	139	53	3	11	136	7	133	6.74e-25	98.2
MsG0180003002.01.T01	AT1G01530	38.298	141	83	2	8	148	4	140	1.61e-20	85.5
MsG0180003002.01.T01	AT1G65360	38.393	112	66	1	11	122	7	115	1.39e-18	80.1
MsG0180003002.01.T01	AT4G36590	32.530	166	90	4	11	169	7	157	1.36e-17	77.8
MsG0180003002.01.T01	AT4G37940	38.532	109	66	1	11	119	2	109	1.73e-17	77.4
MsG0180003002.01.T01	AT4G37940	38.532	109	66	1	11	119	2	109	1.81e-17	77.0
MsG0180003002.01.T01	AT4G37940	38.532	109	66	1	11	119	2	109	3.19e-17	75.5
MsG0180003002.01.T01	AT3G61120	45.833	72	39	0	11	82	2	73	3.90e-17	76.6
MsG0180003002.01.T01	AT5G13790	48.529	68	35	0	11	78	2	69	4.50e-17	77.0
MsG0180003002.01.T01	AT5G13790	48.529	68	35	0	11	78	2	69	4.51e-17	76.6
MsG0180003002.01.T01	AT2G45660	37.037	108	63	2	10	117	3	105	4.78e-17	74.3
MsG0180003002.01.T01	AT1G47760	50.769	65	31	1	11	74	2	66	5.97e-17	74.7
MsG0180003002.01.T01	AT4G22950	47.826	69	34	1	10	78	3	69	9.06e-17	73.9
MsG0180003002.01.T01	AT3G57230	47.059	68	36	0	11	78	2	69	1.12e-16	73.2
MsG0180003002.01.T01	AT3G04100	44.118	68	38	0	8	75	11	78	2.04e-16	73.9
MsG0180003002.01.T01	AT2G45660	37.383	107	62	2	11	117	4	105	2.05e-16	73.9
MsG0180003002.01.T01	AT1G29962	43.056	72	41	0	8	79	5	76	4.11e-16	72.8
MsG0180003002.01.T01	AT3G57230	47.059	68	36	0	11	78	2	69	4.75e-16	73.6
MsG0180003002.01.T01	AT3G57230	47.059	68	36	0	11	78	2	69	4.75e-16	73.6
MsG0180003002.01.T01	AT3G57390	47.059	68	36	0	11	78	2	69	5.12e-16	73.2
MsG0180003002.01.T01	AT4G22950	47.826	69	34	1	10	78	3	69	9.23e-16	72.4
MsG0180003002.01.T01	AT4G22950	47.826	69	34	1	10	78	3	69	9.23e-16	72.4
MsG0180003002.01.T01	AT1G28460	41.333	75	44	0	5	79	2	76	1.06e-15	71.6
MsG0180003002.01.T01	AT3G57390	47.059	68	36	0	11	78	2	69	1.09e-15	72.8
MsG0180003002.01.T01	AT1G72350	51.429	70	32	1	11	80	43	110	1.76e-15	71.6
MsG0180003002.01.T01	AT4G09960	47.143	70	37	0	11	80	2	71	2.01e-15	71.6
MsG0180003002.01.T01	AT4G09960	47.143	70	37	0	11	80	3	72	2.02e-15	71.6
MsG0180003002.01.T01	AT2G22630	38.384	99	58	1	11	106	2	100	2.07e-15	71.6
MsG0180003002.01.T01	AT2G22630	38.384	99	58	1	11	106	2	100	2.07e-15	71.6
MsG0180003002.01.T01	AT2G45650	47.059	68	36	0	11	78	2	69	2.42e-15	72.0
MsG0180003002.01.T01	AT4G09960	47.143	70	37	0	11	80	2	71	2.45e-15	71.2
MsG0180003002.01.T01	AT4G09960	47.143	70	37	0	11	80	12	81	2.84e-15	71.6
MsG0180003002.01.T01	AT4G09960	47.143	70	37	0	11	80	28	97	3.22e-15	71.6
MsG0180003002.01.T01	AT4G09960	47.143	70	37	0	11	80	97	166	3.29e-15	72.4
MsG0180003002.01.T01	AT4G18960	37.383	107	63	1	7	109	14	120	4.56e-15	71.2
MsG0180003002.01.T01	AT4G24540	37.363	91	56	1	14	104	5	94	6.02e-15	70.5
MsG0180003002.01.T01	AT2G14210	43.836	73	40	1	11	82	2	74	1.26e-14	69.7
MsG0180003002.01.T01	AT2G14210	43.836	73	40	1	11	82	2	74	1.34e-14	69.7
MsG0180003002.01.T01	AT5G51860	44.928	69	38	0	14	82	5	73	1.38e-14	68.9
MsG0180003002.01.T01	AT5G51860	34.653	101	64	1	14	114	5	103	1.44e-14	68.9
MsG0180003002.01.T01	AT5G51870	44.118	68	38	0	14	81	5	72	1.52e-14	68.9
MsG0180003002.01.T01	AT5G51870	44.118	68	38	0	14	81	5	72	1.54e-14	68.2
MsG0180003002.01.T01	AT4G11880	54.717	53	24	0	14	66	5	57	1.70e-14	68.2
MsG0180003002.01.T01	AT4G11880	54.717	53	24	0	14	66	5	57	1.70e-14	68.2
MsG0180003002.01.T01	AT2G42830	47.143	70	37	0	11	80	17	86	2.04e-14	69.3
MsG0180003002.01.T01	AT5G20240	41.026	78	44	1	11	86	2	79	2.05e-14	67.4
MsG0180003002.01.T01	AT2G42830	47.143	70	37	0	11	80	17	86	2.09e-14	69.3
MsG0180003002.01.T01	AT5G51870	44.118	68	38	0	14	81	28	95	2.49e-14	68.2
MsG0180003002.01.T01	AT5G51870	44.118	68	38	0	14	81	5	72	2.67e-14	68.6
MsG0180003002.01.T01	AT5G51870	44.118	68	38	0	14	81	15	82	3.63e-14	68.2
MsG0180003002.01.T01	AT3G58780	47.143	70	37	0	11	80	17	86	3.69e-14	68.6
MsG0180003002.01.T01	AT4G11880	53.704	54	25	0	14	67	5	58	4.15e-14	68.2
MsG0180003002.01.T01	AT4G11880	53.704	54	25	0	14	67	5	58	4.15e-14	68.2
MsG0180003002.01.T01	AT3G54340	39.286	84	36	1	14	82	5	88	4.31e-14	68.2
MsG0180003002.01.T01	AT3G58780	47.143	70	37	0	11	80	23	92	4.56e-14	68.6
MsG0180003002.01.T01	AT1G46408	47.143	70	33	1	14	79	7	76	4.78e-14	68.6
MsG0180003002.01.T01	AT5G20240	41.026	78	44	1	11	86	2	79	5.32e-14	67.4
MsG0180003002.01.T01	AT3G58780	47.143	70	37	0	11	80	17	86	6.28e-14	68.6
MsG0180003002.01.T01	AT2G22540	41.000	100	40	3	14	108	5	90	9.36e-14	67.4
MsG0180003002.01.T01	AT2G22540	41.000	100	40	3	14	108	5	90	9.36e-14	67.4
MsG0180003002.01.T01	AT3G30260	51.786	56	27	0	11	66	2	57	9.50e-14	67.4
MsG0180003002.01.T01	AT1G17310	58.182	55	21	1	26	80	63	115	1.09e-13	67.0
MsG0180003002.01.T01	AT1G17310	58.182	55	21	1	26	80	74	126	1.27e-13	67.0
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	1.62e-13	65.1
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	1.62e-13	65.1
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	1.62e-13	65.1
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	2.17e-13	64.7
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	2.17e-13	64.7
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	2.17e-13	64.7
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	2.17e-13	64.7
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	2.17e-13	64.7
MsG0180003002.01.T01	AT3G58780	51.724	58	28	0	11	68	17	74	2.75e-13	66.2
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	2.91e-13	63.2
MsG0180003002.01.T01	AT1G77950	41.463	82	46	2	11	90	2	83	3.11e-13	66.2
MsG0180003002.01.T01	AT1G77950	41.463	82	46	2	11	90	2	83	3.11e-13	66.2
MsG0180003002.01.T01	AT1G77950	41.463	82	46	2	11	90	2	83	3.11e-13	66.2
MsG0180003002.01.T01	AT1G77950	41.463	82	46	2	11	90	2	83	3.11e-13	66.2
MsG0180003002.01.T01	AT3G58780	51.724	58	28	0	11	68	17	74	3.28e-13	66.2
MsG0180003002.01.T01	AT1G77980	41.463	82	46	2	11	90	2	83	3.62e-13	66.6
MsG0180003002.01.T01	AT5G10140	50.000	56	28	0	11	66	2	57	4.07e-13	64.3
MsG0180003002.01.T01	AT1G71692	44.928	69	37	1	13	80	4	72	4.40e-13	65.1
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	5.16e-13	65.1
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	5.16e-13	65.1
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	5.16e-13	65.1
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	5.52e-13	64.7
MsG0180003002.01.T01	AT5G62165	40.299	67	40	0	14	80	5	71	5.52e-13	64.7
MsG0180003002.01.T01	AT5G10140	50.000	56	28	0	11	66	2	57	6.36e-13	64.3
MsG0180003002.01.T01	AT1G69120	58.333	48	20	0	11	58	2	49	6.65e-13	65.1
MsG0180003002.01.T01	AT5G10140	49.123	57	29	0	11	67	2	58	7.16e-13	63.9
MsG0180003002.01.T01	AT5G10140	50.000	56	28	0	11	66	2	57	8.77e-13	63.9
MsG0180003002.01.T01	AT2G22540	60.000	45	18	0	14	58	5	49	9.50e-13	64.7
MsG0180003002.01.T01	AT1G69120	58.333	48	20	0	11	58	2	49	1.10e-12	64.7
MsG0180003002.01.T01	AT2G03710	48.214	56	29	0	11	66	2	57	1.22e-12	63.5
MsG0180003002.01.T01	AT5G60910	48.214	56	29	0	11	66	2	57	1.30e-12	64.3
MsG0180003002.01.T01	AT1G26310	56.250	48	21	0	11	58	2	49	1.51e-12	64.3
MsG0180003002.01.T01	AT1G22130	41.667	72	41	1	11	81	2	73	1.59e-12	64.7
MsG0180003002.01.T01	AT3G02310	50.000	56	28	0	11	66	2	57	1.71e-12	63.2
MsG0180003002.01.T01	AT5G15800	50.000	56	28	0	11	66	2	57	1.85e-12	63.9
MsG0180003002.01.T01	AT1G28450	29.240	171	97	5	5	155	2	168	1.92e-12	62.8
MsG0180003002.01.T01	AT5G65070	43.860	57	32	0	11	67	2	58	2.20e-12	62.0
MsG0180003002.01.T01	AT5G15800	50.000	56	28	0	11	66	2	57	2.51e-12	63.9
MsG0180003002.01.T01	AT1G24260	50.000	56	28	0	11	66	2	57	3.31e-12	63.2
MsG0180003002.01.T01	AT1G24260	50.000	56	28	0	11	66	2	57	3.63e-12	63.2
MsG0180003002.01.T01	AT1G24260	50.000	56	28	0	11	66	2	57	3.88e-12	62.8
MsG0180003002.01.T01	AT5G23260	52.941	51	24	0	8	58	15	65	3.93e-12	63.2
MsG0180003002.01.T01	AT5G23260	52.941	51	24	0	8	58	15	65	4.05e-12	63.2
MsG0180003002.01.T01	AT5G65070	43.860	57	32	0	11	67	2	58	5.06e-12	62.0
MsG0180003002.01.T01	AT5G23260	54.167	48	22	0	11	58	2	49	5.31e-12	62.4
MsG0180003002.01.T01	AT3G02310	50.000	56	28	0	11	66	2	57	5.31e-12	62.8
MsG0180003002.01.T01	AT5G23260	54.167	48	22	0	11	58	2	49	5.64e-12	62.8
MsG0180003002.01.T01	AT5G65070	42.188	64	35	1	11	72	2	65	6.60e-12	62.4
MsG0180003002.01.T01	AT4G37435	27.815	151	87	5	11	160	2	131	9.51e-12	61.2
MsG0180003002.01.T01	AT2G03710	40.506	79	45	1	11	87	2	80	1.13e-11	62.0
MsG0180003002.01.T01	AT2G03710	40.506	79	45	1	11	87	2	80	1.15e-11	62.0
MsG0180003002.01.T01	AT5G65070	43.860	57	32	0	11	67	2	58	1.18e-11	61.6
MsG0180003002.01.T01	AT5G65070	43.860	57	32	0	11	67	2	58	1.62e-11	60.8
MsG0180003002.01.T01	AT1G18750	36.986	73	44	1	11	81	2	74	6.11e-11	60.5
MsG0180003002.01.T01	AT1G18750	36.986	73	44	1	11	81	2	74	6.90e-11	60.5
MsG0180003002.01.T01	AT1G18750	36.986	73	44	1	11	81	2	74	7.06e-11	60.5

Find 33 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGGAACAATCCTTATTCTTT+TGG	0.240671	1:-54702292	MsG0180003002.01.T01:CDS
CTCATCTTATTCTCCGAATA+TGG	0.246894	1:-54702194	MsG0180003002.01.T01:CDS
CCTGGGTGACCAAAAGAATA+AGG	0.337629	1:+54702283	None:intergenic
CTAGAACTTGTTGAGGTGTT+GGG	0.408328	1:-54702160	MsG0180003002.01.T01:CDS
ATAAGATGAGGAGTTTACTA+TGG	0.410961	1:+54702207	None:intergenic
GCTATTGTTGTGTTCTCTCC+AGG	0.420934	1:-54702313	MsG0180003002.01.T01:CDS
AAGCTTTAGTTTCAAATACT+TGG	0.421254	1:+54702243	None:intergenic
ACGAACAGATTGCGGAATCA+TGG	0.455533	1:-54702460	MsG0180003002.01.T01:CDS
ATGTTTGATGCTTCTAGCTC+GGG	0.460885	1:-54701981	MsG0180003002.01.T01:CDS
GCAGCAACAACATCAACTCC+TGG	0.473203	1:+54702265	None:intergenic
TCTAGCTCGGGATCCAGTTG+TGG	0.489119	1:-54701969	MsG0180003002.01.T01:CDS
CACTTTCTCAAAGCGTCGGA+CGG	0.493597	1:-54702386	MsG0180003002.01.T01:CDS
ACTTTCTCAAAGCGTCGGAC+GGG	0.513626	1:-54702385	MsG0180003002.01.T01:CDS
AATGTTTGATGCTTCTAGCT+CGG	0.513731	1:-54701982	MsG0180003002.01.T01:CDS
CTCTCAATTCTTTAAGCTCG+AGG	0.514790	1:+54702065	None:intergenic
CTAGCTCGGGATCCAGTTGT+GGG	0.517277	1:-54701968	MsG0180003002.01.T01:CDS
CGAACAGATTGCGGAATCAT+GGG	0.534606	1:-54702459	MsG0180003002.01.T01:CDS
TCTAGAACTTGTTGAGGTGT+TGG	0.548141	1:-54702161	MsG0180003002.01.T01:CDS
GAAAGACTCCAACACGAGGC+AGG	0.554822	1:-54702410	MsG0180003002.01.T01:CDS
CTATTGTTGTGTTCTCTCCA+GGG	0.556447	1:-54702312	MsG0180003002.01.T01:CDS
AAAGAATAAGGATTGTTCCC+TGG	0.565551	1:+54702295	None:intergenic
ATTGAATCTAGAACTTGTTG+AGG	0.572715	1:-54702167	MsG0180003002.01.T01:CDS
TGCATACTACGAACAGATTG+CGG	0.606972	1:-54702468	MsG0180003002.01.T01:CDS
CAGCAACAACATCAACTCCT+GGG	0.611229	1:+54702266	None:intergenic
CGTCGCAAATTAAAATAGAG+AGG	0.613845	1:-54702435	MsG0180003002.01.T01:CDS
GTCGCAAATTAAAATAGAGA+GGG	0.626677	1:-54702434	MsG0180003002.01.T01:CDS
GAAAGTGACCTGCCTCGTGT+TGG	0.631102	1:+54702402	None:intergenic
AGGTCACTTTCTCAAAGCGT+CGG	0.635421	1:-54702390	MsG0180003002.01.T01:CDS
GACTTCAGCTCCGCACAACA+TGG	0.644720	1:+54702336	None:intergenic
GTGTTGGGACAAGTTCAAGA+AGG	0.657260	1:-54702145	MsG0180003002.01.T01:CDS
CATATTCGGAGAATAAGATG+AGG	0.677681	1:+54702195	None:intergenic
AATGAATTGTCCATGTTGTG+CGG	0.683772	1:-54702346	MsG0180003002.01.T01:CDS
GGGTGAAAGACTCCAACACG+AGG	0.715970	1:-54702414	MsG0180003002.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AGATTCAATTTTTCCATATT+CGG	+	Chr1:54702246-54702265	None:intergenic	20.0%
!!	AAGCTTTAGTTTCAAATACT+TGG	+	Chr1:54702184-54702203	None:intergenic	25.0%
	ATAAGATGAGGAGTTTACTA+TGG	+	Chr1:54702220-54702239	None:intergenic	30.0%
	GTCGCAAATTAAAATAGAGA+GGG	-	Chr1:54701990-54702009	MsG0180003002.01.T01:CDS	30.0%
!!	ATTGAATCTAGAACTTGTTG+AGG	-	Chr1:54702257-54702276	MsG0180003002.01.T01:CDS	30.0%
	AAAGAATAAGGATTGTTCCC+TGG	+	Chr1:54702132-54702151	None:intergenic	35.0%
	AATGAATTGTCCATGTTGTG+CGG	-	Chr1:54702078-54702097	MsG0180003002.01.T01:CDS	35.0%
	CATATTCGGAGAATAAGATG+AGG	+	Chr1:54702232-54702251	None:intergenic	35.0%
	CGTCGCAAATTAAAATAGAG+AGG	-	Chr1:54701989-54702008	MsG0180003002.01.T01:CDS	35.0%
	CTCATCTTATTCTCCGAATA+TGG	-	Chr1:54702230-54702249	MsG0180003002.01.T01:CDS	35.0%
!	AATGTTTGATGCTTCTAGCT+CGG	-	Chr1:54702442-54702461	MsG0180003002.01.T01:CDS	35.0%
!	GGGAACAATCCTTATTCTTT+TGG	-	Chr1:54702132-54702151	MsG0180003002.01.T01:CDS	35.0%
!	TACTCTTTTATTCCCACAAC+TGG	+	Chr1:54702471-54702490	None:intergenic	35.0%
	CTATTGTTGTGTTCTCTCCA+GGG	-	Chr1:54702112-54702131	MsG0180003002.01.T01:CDS	40.0%
	CTCTCAATTCTTTAAGCTCG+AGG	+	Chr1:54702362-54702381	None:intergenic	40.0%
	TGCATACTACGAACAGATTG+CGG	-	Chr1:54701956-54701975	MsG0180003002.01.T01:CDS	40.0%
!!	ATGTTTGATGCTTCTAGCTC+GGG	-	Chr1:54702443-54702462	MsG0180003002.01.T01:CDS	40.0%
!!	CTAGAACTTGTTGAGGTGTT+GGG	-	Chr1:54702264-54702283	MsG0180003002.01.T01:CDS	40.0%
!!	TCTAGAACTTGTTGAGGTGT+TGG	-	Chr1:54702263-54702282	MsG0180003002.01.T01:CDS	40.0%
	ACGAACAGATTGCGGAATCA+TGG	-	Chr1:54701964-54701983	MsG0180003002.01.T01:CDS	45.0%
	CAGCAACAACATCAACTCCT+GGG	+	Chr1:54702161-54702180	None:intergenic	45.0%
	CCTGGGTGACCAAAAGAATA+AGG	+	Chr1:54702144-54702163	None:intergenic	45.0%
	CGAACAGATTGCGGAATCAT+GGG	-	Chr1:54701965-54701984	MsG0180003002.01.T01:CDS	45.0%
	GCTATTGTTGTGTTCTCTCC+AGG	-	Chr1:54702111-54702130	MsG0180003002.01.T01:CDS	45.0%
	GTGTTGGGACAAGTTCAAGA+AGG	-	Chr1:54702279-54702298	MsG0180003002.01.T01:CDS	45.0%
!	AGGTCACTTTCTCAAAGCGT+CGG	-	Chr1:54702034-54702053	MsG0180003002.01.T01:CDS	45.0%
!	CCTTATTCTTTTGGTCACCC+AGG	-	Chr1:54702141-54702160	MsG0180003002.01.T01:CDS	45.0%
	GCAGCAACAACATCAACTCC+TGG	+	Chr1:54702162-54702181	None:intergenic	50.0%
!!	ACTTTCTCAAAGCGTCGGAC+GGG	-	Chr1:54702039-54702058	MsG0180003002.01.T01:CDS	50.0%
!!	CACTTTCTCAAAGCGTCGGA+CGG	-	Chr1:54702038-54702057	MsG0180003002.01.T01:CDS	50.0%
	CTAGCTCGGGATCCAGTTGT+GGG	-	Chr1:54702456-54702475	MsG0180003002.01.T01:CDS	55.0%
	GAAAGACTCCAACACGAGGC+AGG	-	Chr1:54702014-54702033	MsG0180003002.01.T01:CDS	55.0%
	GAAAGTGACCTGCCTCGTGT+TGG	+	Chr1:54702025-54702044	None:intergenic	55.0%
	GACTTCAGCTCCGCACAACA+TGG	+	Chr1:54702091-54702110	None:intergenic	55.0%
	GGGTGAAAGACTCCAACACG+AGG	-	Chr1:54702010-54702029	MsG0180003002.01.T01:CDS	55.0%
!	TCTAGCTCGGGATCCAGTTG+TGG	-	Chr1:54702455-54702474	MsG0180003002.01.T01:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	54701955	54702491	54701955	ID=MsG0180003002.01;Name=MsG0180003002.01
Chr1	mRNA	54701955	54702491	54701955	ID=MsG0180003002.01.T01;Parent=MsG0180003002.01;Name=MsG0180003002.01.T01;_AED=0.04;_eAED=0.04;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|178
Chr1	exon	54701955	54702491	54701955	ID=MsG0180003002.01.T01:exon:22352;Parent=MsG0180003002.01.T01
Chr1	CDS	54701955	54702491	54701955	ID=MsG0180003002.01.T01:cds;Parent=MsG0180003002.01.T01
Chr1	mRNA	54701955	54702197	54701955	ID=MsG0180003002.01.T02;Parent=MsG0180003002.01;Name=MsG0180003002.01.T02;_AED=0.28;_eAED=0.28;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|80
Chr1	exon	54701955	54702197	54701955	ID=MsG0180003002.01.T02:exon:22353;Parent=MsG0180003002.01.T02
Chr1	CDS	54701955	54702197	54701955	ID=MsG0180003002.01.T02:cds;Parent=MsG0180003002.01.T02

Gene Sequence

>MsG0180003002.01.T02

ATGGAAAAATTGAATCTAGAACTTGTTGAGGTGTTGGGACAAGTTCAAGAAGGTGAAAAGCAAGCTAAGAATCATGATGAGATTCTGAAGCAAAACAACGTGACAAAACTCCTCGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATCGAGATATCAGAATGTTTGATGCTTCTAGCTCGGGATCCAGTTGTGGGAATAAAAGAGTAA

>MsG0180003002.01.T01

ATGCATACTACGAACAGATTGCGGAATCATGGGTCGTCGCAAATTAAAATAGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACTTTCTCAAAGCGTCGGACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATGTTGTGCGGAGCTGAAGTCGCTATTGTTGTGTTCTCTCCAGGGAACAATCCTTATTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGTATTTGAAACTAAAGCTTAAACGCATGAATTCCATAGTAAACTCCTCATCTTATTCTCCGAATATGGAAAAATTGAATCTAGAACTTGTTGAGGTGTTGGGACAAGTTCAAGAAGGTGAAAAGCAAGCTAAGAATCATGATGAGATTCTGAAGCAAAACAACGTGACAAAACTCCTCGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATCGAGATATCAGAATGTTTGATGCTTCTAGCTCGGGATCCAGTTGTGGGAATAAAAGAGTAA

Protein sequence

>MsG0180003002.01.T02

MEKLNLELVEVLGQVQEGEKQAKNHDEILKQNNVTKLLELKELRDSYKELQDCIKLRLSDIEISECLMLLARDPVVGIKE*

>MsG0180003002.01.T01

MHTTNRLRNHGSSQIKIERVKDSNTRQVTFSKRRTGLFKKANELSMLCGAEVAIVVFSPGNNPYSFGHPGVDVVAAKYLKLKLKRMNSIVNSSSYSPNMEKLNLELVEVLGQVQEGEKQAKNHDEILKQNNVTKLLELKELRDSYKELQDCIKLRLSDIEISECLMLLARDPVVGIKE*