AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003009.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003009.01.T01 MTR_1g054265 93.077 130 9 0 6 135 2 131 6.38e-85 246
MsG0180003009.01.T01 MTR_1g047550 76.923 130 30 0 6 135 2 131 3.36e-70 209
MsG0180003009.01.T01 MTR_1g063160 76.154 130 31 0 6 135 2 131 1.08e-69 207
MsG0180003009.01.T01 MTR_8g079502 74.615 130 33 0 6 135 2 131 1.07e-65 197
MsG0180003009.01.T01 MTR_4g131030 67.347 147 31 1 6 135 2 148 5.39e-65 197
MsG0180003009.01.T01 MTR_8g051580 61.538 130 50 0 6 135 2 131 4.59e-53 165
MsG0180003009.01.T01 MTR_8g046350 52.941 119 53 1 6 124 2 117 4.66e-39 129
MsG0180003009.01.T01 MTR_3g080940 41.860 129 73 1 6 132 9 137 8.68e-29 104
MsG0180003009.01.T01 MTR_3g052870 40.288 139 74 3 3 132 6 144 1.53e-27 101
MsG0180003009.01.T01 MTR_1g106070 46.296 108 48 2 3 104 6 109 5.08e-27 99.4
MsG0180003009.01.T01 MTR_1g105920 47.115 104 53 1 3 104 6 109 6.59e-27 100
MsG0180003009.01.T01 MTR_3g052920 45.192 104 55 2 3 104 6 109 1.78e-26 99.4
MsG0180003009.01.T01 MTR_1g012570 39.695 131 76 2 3 131 6 135 4.05e-26 98.6
MsG0180003009.01.T01 MTR_1g105910 46.154 104 54 1 3 104 6 109 5.23e-26 98.2
MsG0180003009.01.T01 MTR_5g045560 53.165 79 37 0 6 84 9 87 1.46e-25 97.1
MsG0180003009.01.T01 MTR_1g077360 43.269 104 57 1 3 104 6 109 2.38e-25 96.7
MsG0180003009.01.T01 MTR_0121s0100 43.269 104 57 1 3 104 6 109 3.84e-25 93.2
MsG0180003009.01.T01 MTR_1g108510 44.554 101 54 1 6 104 9 109 4.44e-25 95.5
MsG0180003009.01.T01 MTR_2g030740 44.231 104 56 1 3 104 6 109 6.54e-25 95.5
MsG0180003009.01.T01 MTR_3g030770 54.545 77 35 0 6 82 9 85 8.42e-25 94.7
MsG0180003009.01.T01 MTR_4g094632 44.444 108 60 0 6 113 2 109 1.57e-24 92.4
MsG0180003009.01.T01 MTR_8g043650 44.231 104 56 1 3 104 6 109 1.86e-24 94.4
MsG0180003009.01.T01 MTR_2g093190 44.554 101 54 1 6 104 9 109 5.68e-24 92.8
MsG0180003009.01.T01 MTR_8g086290 43.860 114 57 3 3 114 9 117 8.04e-24 90.9
MsG0180003009.01.T01 MTR_1g108580 42.574 101 56 1 6 104 9 109 9.99e-24 92.0
MsG0180003009.01.T01 MTR_1g075600 50.000 82 41 0 3 84 6 87 2.33e-23 91.3
MsG0180003009.01.T01 MTR_0121s0080 41.322 121 66 2 3 121 6 123 2.92e-23 90.9
MsG0180003009.01.T01 MTR_3g030780 41.818 110 62 1 6 113 9 118 6.62e-23 87.4
MsG0180003009.01.T01 MTR_2g085250 47.561 82 43 0 3 84 6 87 8.42e-23 89.7
MsG0180003009.01.T01 MTR_2g085280 47.561 82 43 0 3 84 6 87 8.79e-23 89.7
MsG0180003009.01.T01 MTR_5g053390 52.778 72 34 0 3 74 6 77 1.12e-22 89.7
MsG0180003009.01.T01 MTR_2g105290 52.055 73 35 0 3 75 9 81 1.51e-22 87.8
MsG0180003009.01.T01 MTR_4g094638 55.072 69 31 0 6 74 2 70 2.49e-22 87.4
MsG0180003009.01.T01 MTR_5g055100 45.122 82 45 0 3 84 6 87 1.94e-21 86.3
MsG0180003009.01.T01 MTR_1g105905 60.656 61 24 0 22 82 8 68 1.01e-19 81.6
MsG0180003009.01.T01 MTR_7g062350 57.576 66 28 0 17 82 32 97 2.48e-19 80.9
MsG0180003009.01.T01 MTR_7g028448 56.140 57 25 0 18 74 24 80 4.38e-19 78.6
MsG0180003009.01.T01 MTR_4g036915 56.140 57 25 0 18 74 24 80 4.38e-19 78.6
MsG0180003009.01.T01 MTR_0003s0590 41.748 103 52 2 6 105 2 99 4.93e-19 80.5
MsG0180003009.01.T01 MTR_3g452380 40.777 103 57 1 6 104 17 119 1.81e-17 75.9
MsG0180003009.01.T01 MTR_2g009890 51.389 72 35 0 6 77 2 73 2.04e-17 76.3
MsG0180003009.01.T01 MTR_5g066960 54.237 59 27 0 6 64 2 60 2.39e-17 71.2
MsG0180003009.01.T01 MTR_5g066180 47.059 68 36 0 6 73 2 69 2.53e-17 75.1
MsG0180003009.01.T01 MTR_2g017865 50.685 73 36 0 3 75 14 86 2.58e-17 75.9
MsG0180003009.01.T01 MTR_4g127140 50.685 73 36 0 3 75 9 81 5.54e-17 73.6
MsG0180003009.01.T01 MTR_8g033220 41.489 94 53 1 7 100 3 94 6.73e-17 73.9
MsG0180003009.01.T01 MTR_8g033220 41.489 94 53 1 7 100 3 94 7.32e-17 73.9
MsG0180003009.01.T01 MTR_7g075870 36.893 103 62 1 7 109 3 102 1.01e-16 73.6
MsG0180003009.01.T01 MTR_1g053070 48.529 68 35 0 6 73 2 69 1.21e-16 73.9
MsG0180003009.01.T01 MTR_8g087860 39.806 103 59 1 6 108 18 117 1.27e-16 73.6
MsG0180003009.01.T01 MTR_8g033270 45.946 74 40 0 6 79 2 75 1.31e-16 73.9
MsG0180003009.01.T01 MTR_3g005530 48.571 70 36 0 6 75 2 71 1.47e-16 73.2
MsG0180003009.01.T01 MTR_1g101970 43.750 80 45 0 6 85 2 81 2.18e-16 72.0
MsG0180003009.01.T01 MTR_3g067875 50.820 61 29 1 22 81 8 68 2.87e-16 68.6
MsG0180003009.01.T01 MTR_4g102530 47.761 67 35 0 7 73 3 69 4.24e-16 71.6
MsG0180003009.01.T01 MTR_7g075870 55.357 56 25 0 7 62 3 58 5.79e-16 71.2
MsG0180003009.01.T01 MTR_1g108500 59.649 57 21 1 22 76 113 169 6.03e-16 72.8
MsG0180003009.01.T01 MTR_5g031000 47.059 68 36 0 6 73 2 69 9.34e-16 71.2
MsG0180003009.01.T01 MTR_5g031000 47.059 68 36 0 6 73 2 69 1.00e-15 70.9
MsG0180003009.01.T01 MTR_6g464720 35.556 135 77 4 6 135 2 131 1.18e-15 71.2
MsG0180003009.01.T01 MTR_4g093970 45.455 66 36 0 7 72 29 94 1.65e-15 70.5
MsG0180003009.01.T01 MTR_5g021270 37.234 94 50 2 6 97 2 88 3.74e-15 69.7
MsG0180003009.01.T01 MTR_5g021270 37.234 94 50 2 6 97 2 88 3.79e-15 69.7
MsG0180003009.01.T01 MTR_3g067910 49.206 63 32 0 22 84 6 68 6.98e-15 66.2
MsG0180003009.01.T01 MTR_5g032150 51.786 56 27 0 6 61 2 57 7.81e-15 68.6
MsG0180003009.01.T01 MTR_3g113030 49.180 61 31 0 6 66 2 62 8.26e-15 68.6
MsG0180003009.01.T01 MTR_1g038300 44.286 70 37 1 6 73 2 71 8.51e-15 68.6
MsG0180003009.01.T01 MTR_2g461710 50.000 56 28 0 6 61 2 57 8.59e-15 64.7
MsG0180003009.01.T01 MTR_5g032520 51.786 56 27 0 6 61 2 57 8.64e-15 68.6
MsG0180003009.01.T01 MTR_4g109830 42.029 69 39 1 6 73 2 70 9.53e-15 68.6
MsG0180003009.01.T01 MTR_5g046790 49.123 57 29 0 6 62 2 58 9.66e-15 68.2
MsG0180003009.01.T01 MTR_5g046870 51.786 56 27 0 6 61 2 57 1.05e-14 65.9
MsG0180003009.01.T01 MTR_4g093030 52.632 57 27 0 6 62 2 58 1.81e-14 66.2
MsG0180003009.01.T01 MTR_4g084740 44.444 72 39 1 6 76 2 73 2.65e-14 68.2
MsG0180003009.01.T01 MTR_1g029670 39.062 64 39 0 6 69 2 65 2.76e-14 66.2
MsG0180003009.01.T01 MTR_7g016630 30.973 113 72 2 6 117 2 109 2.83e-14 67.4
MsG0180003009.01.T01 MTR_3g109930 35.043 117 69 2 11 126 7 117 3.81e-14 65.9
MsG0180003009.01.T01 MTR_7g016600 51.786 56 27 0 6 61 2 57 4.66e-14 67.0
MsG0180003009.01.T01 MTR_3g088615 40.625 64 38 0 6 69 2 65 5.02e-14 65.9
MsG0180003009.01.T01 MTR_3g102570 35.000 100 64 1 6 104 2 101 5.06e-14 67.4
MsG0180003009.01.T01 MTR_8g066260 49.123 57 29 0 6 62 2 58 5.22e-14 66.6
MsG0180003009.01.T01 MTR_3g084980 53.571 56 26 0 6 61 2 57 1.02e-13 65.9
MsG0180003009.01.T01 MTR_1g041615 65.909 44 15 0 19 62 19 62 1.11e-13 63.9
MsG0180003009.01.T01 MTR_4g036050 44.444 72 39 1 6 76 2 73 1.32e-13 64.7
MsG0180003009.01.T01 MTR_8g097090 51.786 56 27 0 6 61 2 57 1.35e-13 65.5
MsG0180003009.01.T01 MTR_4g036050 44.444 72 39 1 6 76 2 73 1.50e-13 64.3
MsG0180003009.01.T01 MTR_4g036050 44.444 72 39 1 6 76 2 73 1.55e-13 64.7
MsG0180003009.01.T01 MTR_6g015975 51.786 56 27 0 6 61 2 57 1.63e-13 65.5
MsG0180003009.01.T01 MTR_4g036050 44.444 72 39 1 6 76 2 73 1.67e-13 64.3
MsG0180003009.01.T01 MTR_5g041650 49.057 53 27 0 6 58 39 91 2.49e-13 65.9
MsG0180003009.01.T01 MTR_4g109810 33.588 131 70 5 6 120 2 131 3.19e-13 64.7
MsG0180003009.01.T01 MTR_7g075850 56.250 48 21 0 6 53 2 49 5.06e-13 63.9
MsG0180003009.01.T01 MTR_4g108720 37.333 75 45 1 6 78 2 76 2.38e-12 62.8
MsG0180003009.01.T01 MTR_8g022970 42.647 68 39 0 7 74 19 86 3.27e-12 60.8
MsG0180003009.01.T01 MTR_3g067870 50.000 52 26 0 22 73 92 143 3.90e-12 60.1
MsG0180003009.01.T01 MTR_3g437790 47.170 53 27 1 23 74 30 82 5.06e-11 57.8
MsG0180003009.01.T02 MTR_1g054265 90.526 95 9 0 1 95 37 131 5.93e-58 176
MsG0180003009.01.T02 MTR_1g047550 71.579 95 27 0 1 95 37 131 3.15e-46 146
MsG0180003009.01.T02 MTR_1g063160 69.474 95 29 0 1 95 37 131 4.48e-44 140
MsG0180003009.01.T02 MTR_8g079502 68.421 95 30 0 1 95 37 131 5.36e-41 133
MsG0180003009.01.T02 MTR_4g131030 59.821 112 28 1 1 95 37 148 1.65e-40 133
MsG0180003009.01.T02 MTR_8g051580 54.737 95 43 0 1 95 37 131 1.26e-31 109
MsG0180003009.01.T02 MTR_8g046350 44.048 84 44 1 1 84 37 117 1.29e-19 78.2
MsG0180003009.01.T02 MTR_3g080940 34.409 93 59 1 2 92 45 137 3.80e-13 62.4
MsG0180003009.01.T02 MTR_3g052870 36.000 100 55 3 2 92 45 144 1.55e-12 60.8
MsG0180003009.01.T02 MTR_1g105920 44.615 65 34 1 2 64 45 109 5.55e-12 59.7
MsG0180003009.01.T02 MTR_1g106070 42.029 69 30 2 2 64 45 109 1.04e-11 58.2
MsG0180003009.01.T02 MTR_1g012570 34.783 92 57 2 2 91 45 135 2.21e-11 58.2
MsG0180003009.01.T02 MTR_1g105910 43.077 65 35 1 2 64 45 109 3.84e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003009.01.T01 AT2G34440 51.818 110 51 2 6 114 2 110 6.71e-33 114
MsG0180003009.01.T01 AT3G66656 72.059 68 19 0 6 73 2 69 4.94e-32 112
MsG0180003009.01.T01 AT2G24840 45.528 123 61 4 6 125 63 182 1.33e-28 105
MsG0180003009.01.T01 AT5G60440 44.604 139 52 3 6 131 7 133 2.84e-27 102
MsG0180003009.01.T01 AT1G01530 42.982 114 64 1 3 116 4 116 5.47e-22 88.2
MsG0180003009.01.T01 AT1G65360 39.815 108 65 0 6 113 7 114 3.90e-21 85.5
MsG0180003009.01.T01 AT4G36590 40.625 128 64 3 6 124 7 131 9.29e-21 84.7
MsG0180003009.01.T01 AT1G47760 55.385 65 28 1 6 69 2 66 3.74e-20 81.6
MsG0180003009.01.T01 AT3G61120 46.753 77 41 0 6 82 2 78 4.78e-20 82.8
MsG0180003009.01.T01 AT1G72350 38.462 130 76 2 6 133 43 170 8.63e-20 81.6
MsG0180003009.01.T01 AT4G22950 43.678 87 45 1 7 93 3 85 2.61e-19 79.3
MsG0180003009.01.T01 AT5G13790 51.471 68 33 0 6 73 2 69 5.40e-19 80.5
MsG0180003009.01.T01 AT5G13790 51.471 68 33 0 6 73 2 69 6.12e-19 80.5
MsG0180003009.01.T01 AT2G45660 36.792 106 64 1 7 112 3 105 6.25e-19 78.2
MsG0180003009.01.T01 AT4G37940 51.389 72 35 0 6 77 2 73 1.02e-18 79.0
MsG0180003009.01.T01 AT4G37940 51.389 72 35 0 6 77 2 73 1.25e-18 78.6
MsG0180003009.01.T01 AT3G57230 50.000 68 34 0 6 73 2 69 1.39e-18 76.6
MsG0180003009.01.T01 AT4G37940 51.389 72 35 0 6 77 2 73 1.69e-18 77.4
MsG0180003009.01.T01 AT4G22950 42.222 90 48 1 7 96 3 88 2.27e-18 77.8
MsG0180003009.01.T01 AT4G22950 42.222 90 48 1 7 96 3 88 2.27e-18 77.8
MsG0180003009.01.T01 AT2G45660 36.792 106 64 1 7 112 3 105 2.28e-18 77.8
MsG0180003009.01.T01 AT3G57230 50.000 68 34 0 6 73 2 69 4.88e-18 77.4
MsG0180003009.01.T01 AT3G57230 50.000 68 34 0 6 73 2 69 4.88e-18 77.4
MsG0180003009.01.T01 AT3G57390 48.529 68 35 0 6 73 2 69 8.09e-18 76.6
MsG0180003009.01.T01 AT3G04100 45.588 68 37 0 3 70 11 78 1.07e-17 75.9
MsG0180003009.01.T01 AT2G22630 48.529 68 35 0 6 73 2 69 1.24e-17 76.3
MsG0180003009.01.T01 AT2G22630 48.529 68 35 0 6 73 2 69 1.24e-17 76.3
MsG0180003009.01.T01 AT3G57390 48.529 68 35 0 6 73 2 69 1.66e-17 76.3
MsG0180003009.01.T01 AT4G09960 46.154 78 42 0 6 83 2 79 1.73e-17 75.5
MsG0180003009.01.T01 AT4G09960 46.154 78 42 0 6 83 2 79 1.83e-17 75.9
MsG0180003009.01.T01 AT4G09960 46.154 78 42 0 6 83 3 80 1.86e-17 75.9
MsG0180003009.01.T01 AT1G29962 43.056 72 41 0 3 74 5 76 2.41e-17 74.7
MsG0180003009.01.T01 AT4G09960 46.154 78 42 0 6 83 12 89 2.91e-17 75.5
MsG0180003009.01.T01 AT4G18960 39.252 107 61 1 2 104 14 120 3.38e-17 75.5
MsG0180003009.01.T01 AT1G28460 43.056 72 41 0 3 74 5 76 4.16e-17 73.9
MsG0180003009.01.T01 AT4G09960 46.154 78 42 0 6 83 28 105 4.22e-17 75.1
MsG0180003009.01.T01 AT4G09960 46.154 78 42 0 6 83 97 174 4.90e-17 75.9
MsG0180003009.01.T01 AT2G45650 48.529 68 35 0 6 73 2 69 6.51e-17 74.7
MsG0180003009.01.T01 AT4G24540 38.298 94 57 1 6 99 2 94 7.74e-17 73.9
MsG0180003009.01.T01 AT2G42830 38.835 103 59 1 6 104 17 119 7.91e-17 74.3
MsG0180003009.01.T01 AT2G42830 38.835 103 59 1 6 104 17 119 8.19e-17 74.3
MsG0180003009.01.T01 AT3G58780 38.835 103 59 1 6 104 17 119 1.34e-16 73.9
MsG0180003009.01.T01 AT3G58780 38.835 103 59 1 6 104 23 125 1.47e-16 73.9
MsG0180003009.01.T01 AT2G14210 41.667 84 48 1 6 88 2 85 1.51e-16 73.6
MsG0180003009.01.T01 AT2G14210 41.667 84 48 1 6 88 2 85 1.90e-16 73.2
MsG0180003009.01.T01 AT3G58780 38.835 103 59 1 6 104 17 119 3.07e-16 73.2
MsG0180003009.01.T01 AT1G46408 48.611 72 33 1 7 74 5 76 3.58e-16 72.8
MsG0180003009.01.T01 AT5G51860 35.922 103 64 1 7 109 3 103 4.54e-16 71.6
MsG0180003009.01.T01 AT5G51860 35.922 103 64 1 7 109 3 103 5.45e-16 71.6
MsG0180003009.01.T01 AT4G11880 55.357 56 25 0 7 62 3 58 5.87e-16 70.9
MsG0180003009.01.T01 AT4G11880 55.357 56 25 0 7 62 3 58 5.87e-16 70.9
MsG0180003009.01.T01 AT5G51870 45.070 71 39 0 3 73 22 92 6.00e-16 71.2
MsG0180003009.01.T01 AT5G51870 45.714 70 38 0 7 76 3 72 6.26e-16 70.5
MsG0180003009.01.T01 AT5G51870 45.714 70 38 0 7 76 3 72 6.30e-16 71.2
MsG0180003009.01.T01 AT3G54340 38.889 90 40 1 6 80 2 91 7.52e-16 71.6
MsG0180003009.01.T01 AT2G22540 45.588 68 37 0 6 73 2 69 9.32e-16 71.2
MsG0180003009.01.T01 AT2G22540 45.588 68 37 0 6 73 2 69 9.32e-16 71.2
MsG0180003009.01.T01 AT5G10140 53.571 56 26 0 6 61 2 57 9.43e-16 70.1
MsG0180003009.01.T01 AT5G20240 42.308 78 43 1 6 81 2 79 1.01e-15 69.3
MsG0180003009.01.T01 AT5G51870 45.714 70 38 0 7 76 3 72 1.26e-15 70.9
MsG0180003009.01.T01 AT5G10140 52.632 57 27 0 6 62 2 58 1.40e-15 69.7
MsG0180003009.01.T01 AT5G65070 49.123 57 29 0 6 62 2 58 1.47e-15 68.9
MsG0180003009.01.T01 AT5G51870 45.714 70 38 0 7 76 13 82 1.54e-15 70.5
MsG0180003009.01.T01 AT5G10140 52.632 57 27 0 6 62 2 58 1.54e-15 69.7
MsG0180003009.01.T01 AT4G11880 55.357 56 25 0 7 62 3 58 1.65e-15 70.5
MsG0180003009.01.T01 AT4G11880 55.357 56 25 0 7 62 3 58 1.65e-15 70.5
MsG0180003009.01.T01 AT5G10140 52.632 57 27 0 6 62 2 58 1.83e-15 69.7
MsG0180003009.01.T01 AT5G20240 45.205 73 38 1 6 76 2 74 2.12e-15 70.1
MsG0180003009.01.T01 AT1G77980 45.833 72 38 1 6 76 2 73 2.98e-15 70.9
MsG0180003009.01.T01 AT5G65070 49.123 57 29 0 6 62 2 58 3.04e-15 69.3
MsG0180003009.01.T01 AT3G58780 56.140 57 25 0 6 62 17 73 3.27e-15 70.1
MsG0180003009.01.T01 AT3G58780 56.140 57 25 0 6 62 17 73 3.65e-15 70.1
MsG0180003009.01.T01 AT1G17310 51.351 74 34 1 5 78 47 118 4.07e-15 69.3
MsG0180003009.01.T01 AT3G30260 53.571 56 26 0 6 61 2 57 4.63e-15 69.7
MsG0180003009.01.T01 AT5G62165 38.961 77 47 0 7 83 3 79 4.69e-15 67.8
MsG0180003009.01.T01 AT5G62165 38.961 77 47 0 7 83 3 79 4.69e-15 67.8
MsG0180003009.01.T01 AT5G62165 38.961 77 47 0 7 83 3 79 4.69e-15 67.8
MsG0180003009.01.T01 AT5G65070 46.875 64 32 1 6 67 2 65 4.93e-15 69.3
MsG0180003009.01.T01 AT1G17310 51.351 74 34 1 5 78 58 129 5.02e-15 69.3
MsG0180003009.01.T01 AT5G62165 38.961 77 47 0 7 83 3 79 5.45e-15 67.8
MsG0180003009.01.T01 AT5G62165 38.961 77 47 0 7 83 3 79 5.45e-15 67.8
MsG0180003009.01.T01 AT5G62165 38.961 77 47 0 7 83 3 79 5.45e-15 67.8
MsG0180003009.01.T01 AT5G62165 38.961 77 47 0 7 83 3 79 5.45e-15 67.8
MsG0180003009.01.T01 AT5G62165 38.961 77 47 0 7 83 3 79 5.45e-15 67.8
MsG0180003009.01.T01 AT1G77950 44.444 72 39 1 6 76 2 73 6.28e-15 69.3
MsG0180003009.01.T01 AT1G77950 44.444 72 39 1 6 76 2 73 6.28e-15 69.3
MsG0180003009.01.T01 AT1G77950 44.444 72 39 1 6 76 2 73 6.28e-15 69.3
MsG0180003009.01.T01 AT1G77950 44.444 72 39 1 6 76 2 73 6.28e-15 69.3
MsG0180003009.01.T01 AT1G71692 46.479 71 37 1 6 75 2 72 6.73e-15 68.6
MsG0180003009.01.T01 AT1G22130 44.444 72 39 1 6 76 2 73 7.80e-15 69.7
MsG0180003009.01.T01 AT5G65070 49.123 57 29 0 6 62 2 58 8.18e-15 68.6
MsG0180003009.01.T01 AT2G22540 51.786 56 27 0 6 61 2 57 8.19e-15 68.9
MsG0180003009.01.T01 AT5G62165 39.726 73 44 0 7 79 3 75 9.94e-15 65.9
MsG0180003009.01.T01 AT5G65070 49.123 57 29 0 6 62 2 58 1.11e-14 68.2
MsG0180003009.01.T01 AT5G62165 38.272 81 50 0 7 87 3 83 1.22e-14 67.8
MsG0180003009.01.T01 AT5G62165 38.272 81 50 0 7 87 3 83 1.22e-14 67.8
MsG0180003009.01.T01 AT5G62165 38.272 81 50 0 7 87 3 83 1.28e-14 67.8
MsG0180003009.01.T01 AT5G62165 38.272 81 50 0 7 87 3 83 1.28e-14 67.8
MsG0180003009.01.T01 AT5G62165 38.272 81 50 0 7 87 3 83 1.28e-14 67.8
MsG0180003009.01.T01 AT1G18750 40.000 75 43 1 6 78 2 76 2.98e-14 68.6
MsG0180003009.01.T01 AT1G18750 40.000 75 43 1 6 78 2 76 3.19e-14 68.6
MsG0180003009.01.T01 AT1G69120 50.877 57 28 0 6 62 2 58 3.55e-14 67.0
MsG0180003009.01.T01 AT2G03710 51.786 56 27 0 6 61 2 57 4.77e-14 65.9
MsG0180003009.01.T01 AT5G60910 50.000 56 28 0 6 61 2 57 5.16e-14 66.6
MsG0180003009.01.T01 AT1G69540 43.243 74 41 1 6 78 2 75 5.57e-14 67.4
MsG0180003009.01.T01 AT1G69120 60.417 48 19 0 6 53 2 49 6.59e-14 66.6
MsG0180003009.01.T01 AT1G69540 43.243 74 41 1 6 78 2 75 6.89e-14 67.4
MsG0180003009.01.T01 AT1G26310 58.333 48 20 0 6 53 2 49 7.38e-14 66.6
MsG0180003009.01.T01 AT5G15800 51.786 56 27 0 6 61 2 57 9.14e-14 66.2
MsG0180003009.01.T01 AT5G23260 56.863 51 22 0 3 53 15 65 1.01e-13 66.2
MsG0180003009.01.T01 AT5G23260 56.863 51 22 0 3 53 15 65 1.04e-13 66.2
MsG0180003009.01.T01 AT5G65060 50.000 54 27 0 6 59 2 55 1.31e-13 64.7
MsG0180003009.01.T01 AT5G15800 51.786 56 27 0 6 61 2 57 1.33e-13 65.9
MsG0180003009.01.T01 AT5G23260 58.333 48 20 0 6 53 2 49 1.40e-13 65.9
MsG0180003009.01.T01 AT5G23260 58.333 48 20 0 6 53 2 49 1.41e-13 65.5
MsG0180003009.01.T01 AT3G02310 51.786 56 27 0 6 61 2 57 1.54e-13 64.7
MsG0180003009.01.T01 AT1G24260 51.786 56 27 0 6 61 2 57 1.67e-13 65.5
MsG0180003009.01.T01 AT1G24260 51.786 56 27 0 6 61 2 57 1.71e-13 65.5
MsG0180003009.01.T01 AT1G24260 51.786 56 27 0 6 61 2 57 1.71e-13 65.5
MsG0180003009.01.T01 AT5G65060 50.000 54 27 0 6 59 2 55 1.95e-13 64.3
MsG0180003009.01.T01 AT2G03710 51.786 56 27 0 6 61 2 57 2.03e-13 65.5
MsG0180003009.01.T01 AT2G03710 51.786 56 27 0 6 61 2 57 2.07e-13 65.5
MsG0180003009.01.T01 AT5G65060 50.000 54 27 0 6 59 2 55 2.11e-13 64.3
MsG0180003009.01.T01 AT3G02310 51.786 56 27 0 6 61 2 57 2.11e-13 65.1
MsG0180003009.01.T01 AT5G65050 48.148 54 28 0 6 59 2 55 2.95e-13 63.5
MsG0180003009.01.T01 AT1G28450 37.500 72 45 0 3 74 5 76 3.12e-13 63.9
MsG0180003009.01.T01 AT5G49490 41.772 79 41 2 1 74 39 117 3.91e-13 64.7
MsG0180003009.01.T01 AT5G65080 48.148 54 28 0 6 59 9 62 4.10e-13 63.5
MsG0180003009.01.T01 AT5G65080 48.148 54 28 0 6 59 9 62 5.15e-13 63.5
MsG0180003009.01.T01 AT5G65050 48.148 54 28 0 6 59 2 55 6.36e-13 62.8
MsG0180003009.01.T01 AT5G65050 48.148 54 28 0 6 59 2 55 6.79e-13 62.8
MsG0180003009.01.T01 AT1G18750 40.000 75 43 1 6 78 2 76 7.11e-13 64.7
MsG0180003009.01.T01 AT5G65050 48.148 54 28 0 6 59 2 55 7.54e-13 62.8
MsG0180003009.01.T01 AT2G26320 43.103 58 33 0 4 61 16 73 8.14e-13 60.8
MsG0180003009.01.T01 AT1G60920 42.466 73 37 2 7 74 5 77 1.17e-12 62.4
MsG0180003009.01.T01 AT2G03060 41.333 75 42 2 6 78 2 76 1.31e-12 63.9
MsG0180003009.01.T01 AT2G03060 41.333 75 42 2 6 78 2 76 1.32e-12 63.9
MsG0180003009.01.T01 AT2G03060 41.333 75 42 2 6 78 2 76 1.32e-12 63.9
MsG0180003009.01.T01 AT2G03060 41.333 75 42 2 6 78 2 76 1.32e-12 63.9
MsG0180003009.01.T01 AT4G37435 31.959 97 59 2 6 101 2 92 1.42e-12 62.0
MsG0180003009.01.T01 AT5G49420 39.241 79 43 2 1 74 1 79 3.55e-12 62.4
MsG0180003009.01.T01 AT5G38620 40.000 75 41 1 7 77 6 80 3.74e-12 62.4
MsG0180003009.01.T01 AT5G04640 44.444 72 36 2 7 74 5 76 4.32e-12 62.0
MsG0180003009.01.T01 AT1G65300 40.278 72 41 2 7 76 2 73 7.36e-11 58.5
MsG0180003009.01.T02 AT5G60440 39.806 103 37 3 2 91 43 133 4.03e-13 63.2
MsG0180003009.01.T02 AT2G24840 39.080 87 47 4 2 85 99 182 1.03e-12 62.0
MsG0180003009.01.T02 AT2G34440 37.838 74 44 2 2 74 38 110 2.66e-11 57.0
MsG0180003009.01.T02 AT3G66656 68.750 32 10 0 2 33 38 69 5.18e-11 56.2

Find 31 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAACAATCCTTATTCTTT+TGG 0.240671 1:-54792743 MsG0180003009.01.T01:CDS
CTCATCTTATTCTCCAAATA+TGG 0.248298 1:-54792645 MsG0180003009.01.T01:CDS
CCTGGGTGACCAAAAGAATA+AGG 0.337629 1:+54792734 None:intergenic
CCTATGGAATTCATGCGATT+AGG 0.390950 1:+54792674 None:intergenic
CTAGAACTTGTTGAGGTGTT+GGG 0.408328 1:-54792611 MsG0180003009.01.T01:CDS
GCTATTGTTGTGTTCTCTCC+AGG 0.420934 1:-54792764 MsG0180003009.01.T01:CDS
AGGCTTTAGTTTCAAATACT+TGG 0.421254 1:+54792694 None:intergenic
GCAGCAACAACATCAACTCC+TGG 0.473203 1:+54792716 None:intergenic
CACTTTCTCAAAGCGCCGGA+CGG 0.491100 1:-54792837 MsG0180003009.01.T01:CDS
ACTTTCTCAAAGCGCCGGAC+GGG 0.500307 1:-54792836 MsG0180003009.01.T01:CDS
CTTTCTTGAATAAGCCCGTC+CGG 0.521875 1:+54792822 None:intergenic
TGAAACATGTTGCGGAATCA+TGG 0.530652 1:-54792911 None:intergenic
ATAAGATGAGGAGTTTCCTA+TGG 0.532335 1:+54792658 None:intergenic
TCTAGAACTTGTTGAGGTGT+TGG 0.548141 1:-54792612 MsG0180003009.01.T01:CDS
GAAAGACTCCAACACGAGGC+AGG 0.554822 1:-54792861 MsG0180003009.01.T01:CDS
CTATTGTTGTGTTCTCTCCA+GGG 0.556447 1:-54792763 MsG0180003009.01.T01:CDS
CCTAATCGCATGAATTCCAT+AGG 0.557834 1:-54792674 MsG0180003009.01.T01:CDS
AAAGAATAAGGATTGTTCCC+TGG 0.565551 1:+54792746 None:intergenic
TCTCTCATTCTTTAAGCTCG+AGG 0.568234 1:+54792516 None:intergenic
GTCGCAAAATTAAAATAGAG+AGG 0.572448 1:-54792886 MsG0180003009.01.T01:CDS
ATTGAATCTAGAACTTGTTG+AGG 0.572715 1:-54792618 MsG0180003009.01.T01:CDS
AGGTCACTTTCTCAAAGCGC+CGG 0.595572 1:-54792841 MsG0180003009.01.T01:CDS
CAGCAACAACATCAACTCCT+GGG 0.611229 1:+54792717 None:intergenic
CATATTTGGAGAATAAGATG+AGG 0.620665 1:+54792646 None:intergenic
TCGCAAAATTAAAATAGAGA+GGG 0.620927 1:-54792885 MsG0180003009.01.T01:CDS
GAAAGTGACCTGCCTCGTGT+TGG 0.631102 1:+54792853 None:intergenic
GACTTCAGCTCCGCACAACA+TGG 0.644720 1:+54792787 None:intergenic
GTGTTGGGACAAGTTCAAGA+AGG 0.657260 1:-54792596 MsG0180003009.01.T01:CDS
TCGTTGAATGAAACATGTTG+CGG 0.662356 1:-54792919 None:intergenic
AATGAATTGTCCATGTTGTG+CGG 0.683772 1:-54792797 MsG0180003009.01.T01:CDS
GGGTGAAAGACTCCAACACG+AGG 0.715970 1:-54792865 MsG0180003009.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTCAATTTTTCCATATT+TGG + Chr1:54792796-54792815 None:intergenic 20.0%
! TCGCAAAATTAAAATAGAGA+GGG - Chr1:54792540-54792559 MsG0180003009.01.T01:CDS 25.0%
CATATTTGGAGAATAAGATG+AGG + Chr1:54792782-54792801 None:intergenic 30.0%
CTCATCTTATTCTCCAAATA+TGG - Chr1:54792780-54792799 MsG0180003009.01.T01:CDS 30.0%
GTCGCAAAATTAAAATAGAG+AGG - Chr1:54792539-54792558 MsG0180003009.01.T01:CDS 30.0%
! AGGCTTTAGTTTCAAATACT+TGG + Chr1:54792734-54792753 None:intergenic 30.0%
!! ATTGAATCTAGAACTTGTTG+AGG - Chr1:54792807-54792826 MsG0180003009.01.T01:CDS 30.0%
AAAGAATAAGGATTGTTCCC+TGG + Chr1:54792682-54792701 None:intergenic 35.0%
AATGAATTGTCCATGTTGTG+CGG - Chr1:54792628-54792647 MsG0180003009.01.T01:CDS 35.0%
ATAAGATGAGGAGTTTCCTA+TGG + Chr1:54792770-54792789 None:intergenic 35.0%
! GGGAACAATCCTTATTCTTT+TGG - Chr1:54792682-54792701 MsG0180003009.01.T01:CDS 35.0%
CCTAATCGCATGAATTCCAT+AGG - Chr1:54792751-54792770 MsG0180003009.01.T01:CDS 40.0%
CCTATGGAATTCATGCGATT+AGG + Chr1:54792754-54792773 None:intergenic 40.0%
CTATTGTTGTGTTCTCTCCA+GGG - Chr1:54792662-54792681 MsG0180003009.01.T01:CDS 40.0%
!! CTAGAACTTGTTGAGGTGTT+GGG - Chr1:54792814-54792833 MsG0180003009.01.T01:CDS 40.0%
!! TCTAGAACTTGTTGAGGTGT+TGG - Chr1:54792813-54792832 MsG0180003009.01.T01:CDS 40.0%
CAGCAACAACATCAACTCCT+GGG + Chr1:54792711-54792730 None:intergenic 45.0%
CCTGGGTGACCAAAAGAATA+AGG + Chr1:54792694-54792713 None:intergenic 45.0%
CTTTCTTGAATAAGCCCGTC+CGG + Chr1:54792606-54792625 None:intergenic 45.0%
GCTATTGTTGTGTTCTCTCC+AGG - Chr1:54792661-54792680 MsG0180003009.01.T01:CDS 45.0%
GTGTTGGGACAAGTTCAAGA+AGG - Chr1:54792829-54792848 MsG0180003009.01.T01:CDS 45.0%
! CCTTATTCTTTTGGTCACCC+AGG - Chr1:54792691-54792710 MsG0180003009.01.T01:CDS 45.0%
GCAGCAACAACATCAACTCC+TGG + Chr1:54792712-54792731 None:intergenic 50.0%
! AGGTCACTTTCTCAAAGCGC+CGG - Chr1:54792584-54792603 MsG0180003009.01.T01:CDS 50.0%
GAAAGACTCCAACACGAGGC+AGG - Chr1:54792564-54792583 MsG0180003009.01.T01:CDS 55.0%
GAAAGTGACCTGCCTCGTGT+TGG + Chr1:54792575-54792594 None:intergenic 55.0%
GACTTCAGCTCCGCACAACA+TGG + Chr1:54792641-54792660 None:intergenic 55.0%
GGGTGAAAGACTCCAACACG+AGG - Chr1:54792560-54792579 MsG0180003009.01.T01:CDS 55.0%
!! ACTTTCTCAAAGCGCCGGAC+GGG - Chr1:54792589-54792608 MsG0180003009.01.T01:CDS 55.0%
!! CACTTTCTCAAAGCGCCGGA+CGG - Chr1:54792588-54792607 MsG0180003009.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 54792520 54792927 54792520 ID=MsG0180003009.01;Name=MsG0180003009.01
Chr1 mRNA 54792520 54792927 54792520 ID=MsG0180003009.01.T01;Parent=MsG0180003009.01;Name=MsG0180003009.01.T01;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|135
Chr1 exon 54792520 54792927 54792520 ID=MsG0180003009.01.T01:exon:2951;Parent=MsG0180003009.01.T01
Chr1 CDS 54792520 54792927 54792520 ID=MsG0180003009.01.T01:cds;Parent=MsG0180003009.01.T01
Chr1 mRNA 54792520 54792807 54792520 ID=MsG0180003009.01.T02;Parent=MsG0180003009.01;Name=MsG0180003009.01.T02;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|0|1|0|95
Chr1 exon 54792520 54792807 54792520 ID=MsG0180003009.01.T02:exon:2952;Parent=MsG0180003009.01.T02
Chr1 CDS 54792520 54792807 54792520 ID=MsG0180003009.01.T02:cds;Parent=MsG0180003009.01.T02
Gene Sequence

>MsG0180003009.01.T01

ATGTTGCGGAATCATGGTCGTCGCAAAATTAAAATAGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACTTTCTCAAAGCGCCGGACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATGTTGTGCGGAGCTGAAGTCGCTATTGTTGTGTTCTCTCCAGGGAACAATCCTTATTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGTATTTGAAACTAAAGCCTAATCGCATGAATTCCATAGGAAACTCCTCATCTTATTCTCCAAATATGGAAAAATTGAATCTAGAACTTGTTGAGGTGTTGGGACAAGTTCAAGAAGGTGAAAAGCAAGCTAAGAATCATGATGAGATTCTGAAGCAAAACAACGTGACAAAACTCCTCGAGCTTAAAGAATGA

>MsG0180003009.01.T02

ATGTTGTGCGGAGCTGAAGTCGCTATTGTTGTGTTCTCTCCAGGGAACAATCCTTATTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGTATTTGAAACTAAAGCCTAATCGCATGAATTCCATAGGAAACTCCTCATCTTATTCTCCAAATATGGAAAAATTGAATCTAGAACTTGTTGAGGTGTTGGGACAAGTTCAAGAAGGTGAAAAGCAAGCTAAGAATCATGATGAGATTCTGAAGCAAAACAACGTGACAAAACTCCTCGAGCTTAAAGAATGA
Protein sequence

>MsG0180003009.01.T01

MLRNHGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSMLCGAEVAIVVFSPGNNPYSFGHPGVDVVAAKYLKLKPNRMNSIGNSSSYSPNMEKLNLELVEVLGQVQEGEKQAKNHDEILKQNNVTKLLELKE*

>MsG0180003009.01.T02

MLCGAEVAIVVFSPGNNPYSFGHPGVDVVAAKYLKLKPNRMNSIGNSSSYSPNMEKLNLELVEVLGQVQEGEKQAKNHDEILKQNNVTKLLELKE*