Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003134.01.T01 | KEH30011.1 | 70.526 | 190 | 26 | 1 | 1 | 160 | 1 | 190 | 7.03E-86 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003134.01.T01 | A0A072UKS7 | 70.526 | 190 | 26 | 1 | 1 | 160 | 1 | 190 | 3.36e-86 | 260 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180003134.01.T01 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003134.01.T01 | MTR_4g057975 | 70.526 | 190 | 26 | 1 | 1 | 160 | 1 | 190 | 8.51e-90 | 260 |
| MsG0180003134.01.T01 | MTR_4g119600 | 65.482 | 197 | 30 | 2 | 1 | 160 | 1 | 196 | 1.05e-80 | 242 |
| MsG0180003134.01.T01 | MTR_6g075990 | 65.482 | 197 | 30 | 2 | 1 | 160 | 19 | 214 | 8.41e-80 | 237 |
| MsG0180003134.01.T01 | MTR_5g031650 | 69.231 | 182 | 33 | 5 | 1 | 160 | 38 | 218 | 3.14e-77 | 229 |
| MsG0180003134.01.T01 | MTR_8g009330 | 65.574 | 183 | 27 | 2 | 1 | 148 | 24 | 205 | 4.33e-75 | 224 |
| MsG0180003134.01.T01 | MTR_8g107490 | 82.576 | 132 | 22 | 1 | 29 | 160 | 45 | 175 | 3.80e-72 | 219 |
| MsG0180003134.01.T01 | MTR_3g067290 | 68.605 | 172 | 41 | 3 | 1 | 160 | 28 | 198 | 2.19e-68 | 207 |
| MsG0180003134.01.T01 | MTR_8g103800 | 58.421 | 190 | 25 | 3 | 1 | 160 | 1 | 166 | 8.54e-60 | 187 |
| MsG0180003134.01.T01 | MTR_1g098990 | 53.807 | 197 | 22 | 2 | 1 | 160 | 1 | 165 | 2.94e-57 | 180 |
| MsG0180003134.01.T01 | MTR_0116s0050 | 61.871 | 139 | 21 | 1 | 22 | 160 | 37 | 143 | 9.86e-51 | 160 |
| MsG0180003134.01.T01 | MTR_8g020433 | 56.173 | 162 | 54 | 5 | 1 | 160 | 1 | 147 | 5.98e-47 | 158 |
| MsG0180003134.01.T01 | MTR_2g096070 | 68.182 | 132 | 11 | 2 | 29 | 160 | 84 | 184 | 1.67e-46 | 161 |
| MsG0180003134.01.T01 | MTR_8g463940 | 57.554 | 139 | 23 | 1 | 1 | 103 | 31 | 169 | 2.72e-46 | 149 |
| MsG0180003134.01.T01 | MTR_6g018990 | 51.190 | 168 | 13 | 2 | 1 | 131 | 1 | 136 | 2.57e-44 | 142 |
| MsG0180003134.01.T01 | MTR_3g434990 | 61.475 | 122 | 9 | 1 | 1 | 84 | 15 | 136 | 2.78e-42 | 138 |
| MsG0180003134.01.T01 | MTR_3g015530 | 53.571 | 140 | 63 | 2 | 22 | 160 | 48 | 186 | 6.04e-42 | 140 |
| MsG0180003134.01.T01 | MTR_8g095070 | 48.469 | 196 | 33 | 5 | 1 | 160 | 1 | 164 | 7.09e-42 | 140 |
| MsG0180003134.01.T01 | MTR_2g026605 | 60.656 | 122 | 11 | 1 | 1 | 85 | 1 | 122 | 8.27e-42 | 136 |
| MsG0180003134.01.T01 | MTR_7g060350 | 49.714 | 175 | 72 | 3 | 1 | 160 | 1 | 174 | 3.67e-41 | 136 |
| MsG0180003134.01.T01 | MTR_0219s0080 | 60.833 | 120 | 12 | 2 | 1 | 85 | 1 | 120 | 6.90e-41 | 134 |
| MsG0180003134.01.T01 | MTR_3g072200 | 49.153 | 177 | 70 | 5 | 2 | 160 | 8 | 182 | 7.06e-40 | 141 |
| MsG0180003134.01.T01 | MTR_6g037570 | 57.639 | 144 | 23 | 2 | 1 | 107 | 16 | 158 | 1.10e-39 | 135 |
| MsG0180003134.01.T01 | MTR_0340s0010 | 60.331 | 121 | 11 | 1 | 1 | 84 | 43 | 163 | 1.23e-39 | 132 |
| MsG0180003134.01.T01 | MTR_6g019000 | 59.504 | 121 | 12 | 1 | 1 | 84 | 1 | 121 | 3.13e-39 | 129 |
| MsG0180003134.01.T01 | MTR_0341s0040 | 59.504 | 121 | 12 | 1 | 1 | 84 | 1 | 121 | 3.94e-39 | 129 |
| MsG0180003134.01.T01 | MTR_3g077875 | 49.286 | 140 | 70 | 1 | 22 | 160 | 77 | 216 | 5.17e-39 | 134 |
| MsG0180003134.01.T01 | MTR_2g030885 | 61.157 | 121 | 11 | 1 | 1 | 85 | 1 | 121 | 3.72e-38 | 136 |
| MsG0180003134.01.T01 | MTR_3g110070 | 57.500 | 120 | 14 | 1 | 1 | 83 | 1 | 120 | 1.45e-36 | 123 |
| MsG0180003134.01.T01 | MTR_3g034840 | 42.754 | 138 | 78 | 1 | 24 | 160 | 69 | 206 | 9.85e-35 | 121 |
| MsG0180003134.01.T01 | MTR_0599s0020 | 42.754 | 138 | 78 | 1 | 24 | 160 | 69 | 206 | 9.85e-35 | 121 |
| MsG0180003134.01.T01 | MTR_3g087440 | 44.172 | 163 | 84 | 3 | 5 | 160 | 54 | 216 | 2.31e-34 | 120 |
| MsG0180003134.01.T01 | MTR_4g051638 | 51.261 | 119 | 56 | 2 | 22 | 139 | 122 | 239 | 7.00e-34 | 119 |
| MsG0180003134.01.T01 | MTR_8g038805 | 46.667 | 150 | 58 | 5 | 1 | 147 | 1 | 131 | 1.08e-32 | 113 |
| MsG0180003134.01.T01 | MTR_7g050385 | 53.913 | 115 | 50 | 3 | 29 | 142 | 120 | 232 | 3.53e-32 | 115 |
| MsG0180003134.01.T01 | MTR_2g067720 | 84.127 | 63 | 10 | 0 | 22 | 84 | 54 | 116 | 5.64e-32 | 111 |
| MsG0180003134.01.T01 | MTR_6g464570 | 45.139 | 144 | 62 | 4 | 26 | 155 | 9 | 149 | 1.23e-31 | 111 |
| MsG0180003134.01.T01 | MTR_5g006100 | 46.875 | 128 | 67 | 1 | 34 | 160 | 65 | 192 | 1.76e-31 | 119 |
| MsG0180003134.01.T01 | MTR_3g462670 | 43.750 | 160 | 82 | 3 | 1 | 160 | 1 | 152 | 1.33e-30 | 110 |
| MsG0180003134.01.T01 | MTR_1g059880 | 48.120 | 133 | 59 | 4 | 2 | 126 | 44 | 174 | 1.59e-30 | 110 |
| MsG0180003134.01.T01 | MTR_8g059020 | 55.357 | 112 | 13 | 1 | 1 | 75 | 92 | 203 | 2.60e-30 | 110 |
| MsG0180003134.01.T01 | MTR_4g051612 | 79.365 | 63 | 13 | 0 | 22 | 84 | 74 | 136 | 5.55e-30 | 108 |
| MsG0180003134.01.T01 | MTR_4g049670 | 48.148 | 135 | 65 | 4 | 1 | 134 | 1 | 131 | 1.26e-28 | 103 |
| MsG0180003134.01.T01 | MTR_3g030230 | 56.250 | 96 | 41 | 1 | 65 | 160 | 69 | 163 | 4.22e-28 | 102 |
| MsG0180003134.01.T01 | MTR_4g057300 | 58.511 | 94 | 38 | 1 | 67 | 160 | 1 | 93 | 4.96e-28 | 106 |
| MsG0180003134.01.T01 | MTR_6g090600 | 50.980 | 102 | 49 | 1 | 41 | 142 | 1 | 101 | 1.20e-27 | 99.8 |
| MsG0180003134.01.T01 | MTR_2g105460 | 60.204 | 98 | 9 | 1 | 3 | 70 | 40 | 137 | 2.07e-27 | 107 |
| MsG0180003134.01.T01 | MTR_2g067930 | 42.771 | 166 | 88 | 3 | 1 | 160 | 1 | 165 | 4.01e-27 | 100 |
| MsG0180003134.01.T01 | MTR_1g081740 | 35.751 | 193 | 60 | 4 | 2 | 160 | 7 | 169 | 7.56e-27 | 100 |
| MsG0180003134.01.T01 | MTR_1g052890 | 81.356 | 59 | 11 | 0 | 102 | 160 | 2 | 60 | 1.06e-26 | 102 |
| MsG0180003134.01.T01 | MTR_5g079560 | 44.361 | 133 | 69 | 3 | 14 | 142 | 66 | 197 | 1.62e-26 | 100 |
| MsG0180003134.01.T01 | MTR_3g467720 | 45.000 | 160 | 38 | 5 | 1 | 160 | 7 | 116 | 2.83e-26 | 97.1 |
| MsG0180003134.01.T01 | MTR_3g437000 | 55.294 | 85 | 36 | 2 | 22 | 105 | 40 | 123 | 4.17e-26 | 96.7 |
| MsG0180003134.01.T01 | MTR_5g098640 | 50.000 | 110 | 19 | 1 | 1 | 74 | 1 | 110 | 4.54e-26 | 97.8 |
| MsG0180003134.01.T01 | MTR_5g046245 | 75.806 | 62 | 15 | 0 | 99 | 160 | 5 | 66 | 2.87e-25 | 97.1 |
| MsG0180003134.01.T01 | MTR_5g046245 | 72.881 | 59 | 16 | 0 | 102 | 160 | 152 | 210 | 2.26e-22 | 89.4 |
| MsG0180003134.01.T01 | MTR_5g060540 | 44.361 | 133 | 47 | 3 | 29 | 160 | 48 | 154 | 2.48e-24 | 97.4 |
| MsG0180003134.01.T01 | MTR_7g010970 | 50.000 | 90 | 43 | 2 | 72 | 160 | 6 | 94 | 2.65e-24 | 94.4 |
| MsG0180003134.01.T01 | MTR_2g026585 | 39.286 | 140 | 55 | 2 | 21 | 160 | 61 | 170 | 3.03e-22 | 91.7 |
| MsG0180003134.01.T01 | MTR_6g007833 | 53.608 | 97 | 9 | 1 | 1 | 61 | 1 | 97 | 3.69e-22 | 88.2 |
| MsG0180003134.01.T01 | MTR_8g445570 | 63.235 | 68 | 25 | 0 | 93 | 160 | 8 | 75 | 7.41e-22 | 85.1 |
| MsG0180003134.01.T01 | MTR_1g012760 | 35.032 | 157 | 95 | 4 | 6 | 160 | 17 | 168 | 1.62e-21 | 88.2 |
| MsG0180003134.01.T01 | MTR_1g012760 | 35.032 | 157 | 95 | 4 | 6 | 160 | 28 | 179 | 1.79e-21 | 88.2 |
| MsG0180003134.01.T01 | MTR_7g064870 | 33.333 | 171 | 92 | 4 | 1 | 150 | 1 | 170 | 2.94e-21 | 85.5 |
| MsG0180003134.01.T01 | MTR_1g058140 | 37.888 | 161 | 83 | 3 | 1 | 160 | 22 | 166 | 1.49e-20 | 84.7 |
| MsG0180003134.01.T01 | MTR_5g070810 | 43.434 | 99 | 55 | 1 | 48 | 145 | 14 | 112 | 1.62e-20 | 81.6 |
| MsG0180003134.01.T01 | MTR_6g089230 | 52.439 | 82 | 38 | 1 | 72 | 153 | 28 | 108 | 1.77e-20 | 84.7 |
| MsG0180003134.01.T01 | MTR_0156s0040 | 49.474 | 95 | 47 | 1 | 67 | 160 | 1 | 95 | 2.86e-20 | 82.8 |
| MsG0180003134.01.T01 | MTR_5g046160 | 38.346 | 133 | 65 | 3 | 28 | 160 | 46 | 161 | 3.58e-20 | 84.3 |
| MsG0180003134.01.T01 | MTR_2g451070 | 41.880 | 117 | 38 | 4 | 1 | 88 | 7 | 122 | 7.60e-20 | 80.1 |
| MsG0180003134.01.T01 | MTR_6g029530 | 32.903 | 155 | 90 | 3 | 16 | 160 | 491 | 641 | 1.23e-18 | 82.0 |
| MsG0180003134.01.T01 | MTR_2g073060 | 52.174 | 69 | 33 | 0 | 22 | 90 | 100 | 168 | 1.88e-18 | 77.8 |
| MsG0180003134.01.T01 | MTR_3g116710 | 33.824 | 136 | 84 | 3 | 29 | 160 | 84 | 217 | 1.98e-18 | 79.3 |
| MsG0180003134.01.T01 | MTR_3g045850 | 46.154 | 78 | 40 | 1 | 23 | 100 | 72 | 147 | 4.12e-18 | 76.6 |
| MsG0180003134.01.T01 | MTR_1g075420 | 46.835 | 79 | 40 | 1 | 22 | 100 | 38 | 114 | 8.66e-18 | 75.1 |
| MsG0180003134.01.T01 | MTR_4g120790 | 33.333 | 132 | 57 | 1 | 29 | 160 | 70 | 170 | 2.00e-17 | 76.3 |
| MsG0180003134.01.T01 | MTR_1g080040 | 42.553 | 94 | 53 | 1 | 68 | 160 | 1 | 94 | 1.62e-16 | 72.4 |
| MsG0180003134.01.T01 | MTR_7g057800 | 44.828 | 87 | 47 | 1 | 4 | 90 | 171 | 256 | 1.77e-16 | 74.3 |
| MsG0180003134.01.T01 | MTR_7g057800 | 53.448 | 58 | 27 | 0 | 23 | 80 | 68 | 125 | 5.52e-15 | 70.5 |
| MsG0180003134.01.T01 | MTR_1g075860 | 55.357 | 56 | 25 | 0 | 23 | 78 | 49 | 104 | 4.64e-16 | 70.5 |
| MsG0180003134.01.T01 | MTR_2g461140 | 36.765 | 136 | 51 | 5 | 30 | 160 | 48 | 153 | 7.62e-16 | 71.2 |
| MsG0180003134.01.T01 | MTR_7g065910 | 41.176 | 102 | 50 | 3 | 60 | 160 | 26 | 118 | 7.89e-16 | 73.6 |
| MsG0180003134.01.T01 | MTR_5g015710 | 42.857 | 91 | 51 | 1 | 23 | 112 | 76 | 166 | 2.88e-15 | 70.5 |
| MsG0180003134.01.T01 | MTR_8g016360 | 37.500 | 120 | 68 | 4 | 23 | 138 | 17 | 133 | 3.66e-15 | 68.6 |
| MsG0180003134.01.T01 | MTR_1g088955 | 37.415 | 147 | 50 | 5 | 1 | 146 | 1 | 106 | 6.96e-15 | 68.2 |
| MsG0180003134.01.T01 | MTR_1g099140 | 30.986 | 142 | 92 | 3 | 23 | 160 | 83 | 222 | 1.46e-14 | 70.5 |
| MsG0180003134.01.T01 | MTR_2g090505 | 30.147 | 136 | 89 | 3 | 29 | 160 | 89 | 222 | 1.79e-14 | 69.7 |
| MsG0180003134.01.T01 | MTR_5g046145 | 32.576 | 132 | 82 | 3 | 29 | 160 | 125 | 249 | 4.73e-14 | 68.6 |
| MsG0180003134.01.T01 | MTR_8g467980 | 47.143 | 70 | 36 | 1 | 29 | 98 | 76 | 144 | 2.43e-13 | 63.9 |
| MsG0180003134.01.T01 | MTR_5g060510 | 38.983 | 118 | 48 | 2 | 22 | 139 | 72 | 165 | 3.91e-13 | 63.9 |
| MsG0180003134.01.T01 | MTR_7g034570 | 30.864 | 162 | 89 | 4 | 2 | 160 | 18 | 159 | 4.47e-13 | 63.9 |
| MsG0180003134.01.T01 | MTR_4g113170 | 51.613 | 62 | 30 | 0 | 99 | 160 | 72 | 133 | 6.27e-13 | 65.9 |
| MsG0180003134.01.T01 | MTR_4g066090 | 51.667 | 60 | 29 | 0 | 101 | 160 | 67 | 126 | 7.83e-13 | 62.8 |
| MsG0180003134.01.T01 | MTR_8g446840 | 46.970 | 66 | 30 | 1 | 95 | 160 | 12 | 72 | 1.10e-12 | 60.5 |
| MsG0180003134.01.T01 | MTR_5g055912 | 52.941 | 51 | 24 | 0 | 99 | 149 | 10 | 60 | 4.60e-11 | 55.8 |
| MsG0180003134.01.T01 | MTR_2g046540 | 41.538 | 65 | 38 | 0 | 24 | 88 | 85 | 149 | 6.30e-11 | 57.8 |
| MsG0180003134.01.T01 | MTR_1g043340 | 64.286 | 42 | 15 | 0 | 115 | 156 | 3 | 44 | 6.55e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 55 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATGTATCAAATATTTCT+TGG | 0.267839 | 1:-57143367 | None:intergenic |
| TCTTGGAAGCACCTTGCTTT+TGG | 0.274141 | 1:-57143350 | None:intergenic |
| CATTCATGCCGGTAGATTAA+AGG | 0.321864 | 1:+57143297 | MsG0180003134.01.T01:CDS |
| GGCACGTCGTCAAGCAAATA+AGG | 0.338909 | 1:+57143030 | MsG0180003134.01.T01:CDS |
| GAGCTCATTGTCGCATGCTT+TGG | 0.346653 | 1:-57143154 | None:intergenic |
| AGAGAACGCGGAAGATGTTC+CGG | 0.352211 | 1:+57142797 | MsG0180003134.01.T01:CDS |
| AAAGTAAGCAAACAAAGAAA+TGG | 0.355501 | 1:+57143215 | MsG0180003134.01.T01:CDS |
| AAGTAAGCAAACAAAGAAAT+GGG | 0.404794 | 1:+57143216 | MsG0180003134.01.T01:CDS |
| GCGATGGAGTCGGCTTTAGA+AGG | 0.417604 | 1:+57143271 | MsG0180003134.01.T01:CDS |
| TGGGGATTGAACATTCATAA+TGG | 0.447951 | 1:+57143235 | MsG0180003134.01.T01:CDS |
| GGGTGCTTGTTCAAGATTAG+TGG | 0.470220 | 1:+57143187 | MsG0180003134.01.T01:CDS |
| GTAGTCCTCCTTTAATCTAC+CGG | 0.489170 | 1:-57143305 | None:intergenic |
| CGGAGATGTCAATCTGCCTA+AGG | 0.515721 | 1:+57142851 | MsG0180003134.01.T01:CDS |
| GAGAACGCGGAAGATGTTCC+GGG | 0.521200 | 1:+57142798 | MsG0180003134.01.T01:CDS |
| GAGTGGTGCTTACAAAGTGC+CGG | 0.549234 | 1:+57143120 | MsG0180003134.01.T01:CDS |
| TCACACACTAGGCGCAACAT+TGG | 0.565344 | 1:-57143094 | None:intergenic |
| CTTAGGCAGATTGACATCTC+CGG | 0.572153 | 1:-57142850 | None:intergenic |
| CGTCGTCAAGCAAATAAGGC+GGG | 0.585237 | 1:+57143034 | MsG0180003134.01.T01:CDS |
| TAGAGAAGAATTGCTTGAGT+GGG | 0.610370 | 1:+57143009 | MsG0180003134.01.T01:CDS |
| TCACAACCATGCGATGGAGT+CGG | 0.614909 | 1:+57143261 | MsG0180003134.01.T01:CDS |
| CACCACTCCTTTCACACACT+AGG | 0.615515 | 1:-57143105 | None:intergenic |
| TGGAGTTCACAACCATGCGA+TGG | 0.616718 | 1:+57143255 | MsG0180003134.01.T01:CDS |
| ACAATGAGCTCAAGAAAATG+TGG | 0.618433 | 1:+57143166 | MsG0180003134.01.T01:CDS |
| CTAAAGCCGACTCCATCGCA+TGG | 0.629215 | 1:-57143267 | None:intergenic |
| ATAGAGAAGAATTGCTTGAG+TGG | 0.632021 | 1:+57143008 | MsG0180003134.01.T01:CDS |
| TTAGAAGGACACATTCATGC+CGG | 0.632707 | 1:+57143286 | MsG0180003134.01.T01:CDS |
| CAATGAGCTCAAGAAAATGT+GGG | 0.635717 | 1:+57143167 | MsG0180003134.01.T01:CDS |
| CGCCTAGTGTGTGAAAGGAG+TGG | 0.657245 | 1:+57143103 | MsG0180003134.01.T01:CDS |
| TGTTGCGCCTAGTGTGTGAA+AGG | 0.658960 | 1:+57143098 | MsG0180003134.01.T01:CDS |
| TATAGTAATGGTAGAGAACG+CGG | 0.660672 | 1:+57142785 | None:intergenic |
| AGTAAGCAAACAAAGAAATG+GGG | 0.663833 | 1:+57143217 | MsG0180003134.01.T01:CDS |
| TCATGCCGGTAGATTAAAGG+AGG | 0.674323 | 1:+57143300 | MsG0180003134.01.T01:CDS |
| ACGTGACTTGACCAAAAGCA+AGG | 0.676557 | 1:+57143339 | MsG0180003134.01.T01:CDS |
| ACGTCGTCAAGCAAATAAGG+CGG | 0.684842 | 1:+57143033 | MsG0180003134.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAGTAAGCAAACAAAGAAA+TGG | + | Chr1:57143215-57143234 | MsG0180003134.01.T01:CDS | 25.0% |
| ! | AAGTAAGCAAACAAAGAAAT+GGG | + | Chr1:57143216-57143235 | MsG0180003134.01.T01:CDS | 25.0% |
| !! | CCAAATTTTGTCAAAATTTC+CGG | + | Chr1:57142831-57142850 | MsG0180003134.01.T01:CDS | 25.0% |
| !!! | TGCTTTGGTTTTTTTTTTTC+CGG | - | Chr1:57143142-57143161 | None:intergenic | 25.0% |
| AGTAAGCAAACAAAGAAATG+GGG | + | Chr1:57143217-57143236 | MsG0180003134.01.T01:CDS | 30.0% | |
| CATATTTAGAAGCTTCAACA+TGG | - | Chr1:57142911-57142930 | None:intergenic | 30.0% | |
| CATGTTGAAGCTTCTAAATA+TGG | + | Chr1:57142909-57142928 | MsG0180003134.01.T01:intron | 30.0% | |
| !! | CCGGAAATTTTGACAAAATT+TGG | - | Chr1:57142834-57142853 | None:intergenic | 30.0% |
| ACAATGAGCTCAAGAAAATG+TGG | + | Chr1:57143166-57143185 | MsG0180003134.01.T01:CDS | 35.0% | |
| ATAGAGAAGAATTGCTTGAG+TGG | + | Chr1:57143008-57143027 | MsG0180003134.01.T01:CDS | 35.0% | |
| CAATGAGCTCAAGAAAATGT+GGG | + | Chr1:57143167-57143186 | MsG0180003134.01.T01:CDS | 35.0% | |
| GTTGAAGCTTCTAAATATGG+TGG | + | Chr1:57142912-57142931 | MsG0180003134.01.T01:intron | 35.0% | |
| TAGAGAAGAATTGCTTGAGT+GGG | + | Chr1:57143009-57143028 | MsG0180003134.01.T01:CDS | 35.0% | |
| TGGGGATTGAACATTCATAA+TGG | + | Chr1:57143235-57143254 | MsG0180003134.01.T01:CDS | 35.0% | |
| TTTAGAAGCTTCAACATGGA+CGG | - | Chr1:57142907-57142926 | None:intergenic | 35.0% | |
| !!! | AAATTTGGTTTTGTCTCTCC+CGG | - | Chr1:57142819-57142838 | None:intergenic | 35.0% |
| AGCTCCATCAATGTTTGGTT+TGG | - | Chr1:57142883-57142902 | None:intergenic | 40.0% | |
| CATTCATGCCGGTAGATTAA+AGG | + | Chr1:57143297-57143316 | MsG0180003134.01.T01:CDS | 40.0% | |
| GAAGCCAAACCAAACATTGA+TGG | + | Chr1:57142876-57142895 | MsG0180003134.01.T01:intron | 40.0% | |
| GTAGTCCTCCTTTAATCTAC+CGG | - | Chr1:57143308-57143327 | None:intergenic | 40.0% | |
| TTAGAAGGACACATTCATGC+CGG | + | Chr1:57143286-57143305 | MsG0180003134.01.T01:CDS | 40.0% | |
| !! | TTTGGTTTGGCTTCAACCTT+AGG | - | Chr1:57142870-57142889 | None:intergenic | 40.0% |
| !!! | TTGACACGGCTAGGTTTTTT+CGG | + | Chr1:57142967-57142986 | MsG0180003134.01.T01:intron | 40.0% |
| !!! | TTTTTTCGGACGACGTTAAG+TGG | + | Chr1:57142981-57143000 | MsG0180003134.01.T01:CDS | 40.0% |
| ACGGAAGCTCCATCAATGTT+TGG | - | Chr1:57142888-57142907 | None:intergenic | 45.0% | |
| ACGTCGTCAAGCAAATAAGG+CGG | + | Chr1:57143033-57143052 | MsG0180003134.01.T01:CDS | 45.0% | |
| ACGTGACTTGACCAAAAGCA+AGG | + | Chr1:57143339-57143358 | MsG0180003134.01.T01:CDS | 45.0% | |
| CTTAGGCAGATTGACATCTC+CGG | - | Chr1:57142853-57142872 | None:intergenic | 45.0% | |
| GCTTCTAAATATGGTGGCTC+CGG | + | Chr1:57142918-57142937 | MsG0180003134.01.T01:intron | 45.0% | |
| GGGTGCTTGTTCAAGATTAG+TGG | + | Chr1:57143187-57143206 | MsG0180003134.01.T01:CDS | 45.0% | |
| TCATGCCGGTAGATTAAAGG+AGG | + | Chr1:57143300-57143319 | MsG0180003134.01.T01:CDS | 45.0% | |
| !!! | TCTTGGAAGCACCTTGCTTT+TGG | - | Chr1:57143353-57143372 | None:intergenic | 45.0% |
| AGAGAACGCGGAAGATGTTC+CGG | + | Chr1:57142797-57142816 | MsG0180003134.01.T01:CDS | 50.0% | |
| CAACTTCGTGGGCTTGAAGT+GGG | - | Chr1:57142950-57142969 | None:intergenic | 50.0% | |
| CACCACTCCTTTCACACACT+AGG | - | Chr1:57143108-57143127 | None:intergenic | 50.0% | |
| CGGAGATGTCAATCTGCCTA+AGG | + | Chr1:57142851-57142870 | MsG0180003134.01.T01:CDS | 50.0% | |
| CGTCGTCAAGCAAATAAGGC+GGG | + | Chr1:57143034-57143053 | MsG0180003134.01.T01:CDS | 50.0% | |
| GAGCTCATTGTCGCATGCTT+TGG | - | Chr1:57143157-57143176 | None:intergenic | 50.0% | |
| GAGTGGTGCTTACAAAGTGC+CGG | + | Chr1:57143120-57143139 | MsG0180003134.01.T01:CDS | 50.0% | |
| GGCACGTCGTCAAGCAAATA+AGG | + | Chr1:57143030-57143049 | MsG0180003134.01.T01:CDS | 50.0% | |
| TCAACTTCGTGGGCTTGAAG+TGG | - | Chr1:57142951-57142970 | None:intergenic | 50.0% | |
| TCAAGCCCACGAAGTTGACA+CGG | + | Chr1:57142953-57142972 | MsG0180003134.01.T01:intron | 50.0% | |
| TCACAACCATGCGATGGAGT+CGG | + | Chr1:57143261-57143280 | MsG0180003134.01.T01:CDS | 50.0% | |
| TCACACACTAGGCGCAACAT+TGG | - | Chr1:57143097-57143116 | None:intergenic | 50.0% | |
| TGGAGTTCACAACCATGCGA+TGG | + | Chr1:57143255-57143274 | MsG0180003134.01.T01:CDS | 50.0% | |
| TGTTGCGCCTAGTGTGTGAA+AGG | + | Chr1:57143098-57143117 | MsG0180003134.01.T01:CDS | 50.0% | |
| ACCTAGCCGTGTCAACTTCG+TGG | - | Chr1:57142962-57142981 | None:intergenic | 55.0% | |
| CCTAGCCGTGTCAACTTCGT+GGG | - | Chr1:57142961-57142980 | None:intergenic | 55.0% | |
| CGCCTAGTGTGTGAAAGGAG+TGG | + | Chr1:57143103-57143122 | MsG0180003134.01.T01:CDS | 55.0% | |
| GAGAACGCGGAAGATGTTCC+GGG | + | Chr1:57142798-57142817 | MsG0180003134.01.T01:CDS | 55.0% | |
| ! | CTAAAGCCGACTCCATCGCA+TGG | - | Chr1:57143270-57143289 | None:intergenic | 55.0% |
| !! | GCGATGGAGTCGGCTTTAGA+AGG | + | Chr1:57143271-57143290 | MsG0180003134.01.T01:CDS | 55.0% |
| CCCACGAAGTTGACACGGCT+AGG | + | Chr1:57142958-57142977 | MsG0180003134.01.T01:intron | 60.0% | |
| CTTCGTGGGCTTGAAGTGGG+AGG | - | Chr1:57142947-57142966 | None:intergenic | 60.0% | |
| GGCTTGAAGTGGGAGGACAC+CGG | - | Chr1:57142940-57142959 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 57142792 | 57143381 | 57142792 | ID=MsG0180003134.01;Name=MsG0180003134.01 |
| Chr1 | mRNA | 57142792 | 57143381 | 57142792 | ID=MsG0180003134.01.T01;Parent=MsG0180003134.01;Name=MsG0180003134.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.5|0|0|2|0|160 |
| Chr1 | exon | 57142792 | 57142872 | 57142792 | ID=MsG0180003134.01.T01:exon:15760;Parent=MsG0180003134.01.T01 |
| Chr1 | exon | 57142980 | 57143381 | 57142980 | ID=MsG0180003134.01.T01:exon:15761;Parent=MsG0180003134.01.T01 |
| Chr1 | CDS | 57142792 | 57142872 | 57142792 | ID=MsG0180003134.01.T01:cds;Parent=MsG0180003134.01.T01 |
| Chr1 | CDS | 57142980 | 57143381 | 57142980 | ID=MsG0180003134.01.T01:cds;Parent=MsG0180003134.01.T01 |
| Gene Sequence |
| Protein sequence |
