AlfalfaGEDB | MsG0180003243.01

M. sativa cultivar ZhongmuNo.1 / MsG0180003243.01

KEGG: K12606
GO: GO:0005488
PFAM: PF04078

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003243.01.T01	XP_024638784.2	92.83	265	19	0	1	265	1	265	1.92E-178	501

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003243.01.T01	Q6IP65	55.932	236	102	1	18	253	9	242	2.67E-87	265

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003243.01.T01	G7I8I6	92.830	265	19	0	1	265	1	265	9.15e-179	501

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TFs/TRs:

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Gene ID	Type	Classification
MsG0180003243.01.T01	TR	Rcd1-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003243.01.T01	MTR_1g056470	92.830	265	19	0	1	265	1	265	0.0	501
MsG0180003243.01.T01	MTR_3g018640	61.479	257	95	1	1	253	1	257	4.84e-112	325
MsG0180003243.01.T01	MTR_6g065170	59.108	269	104	3	1	263	1	269	6.42e-104	305
MsG0180003243.01.T01	MTR_8g106940	57.621	269	108	2	1	263	1	269	1.95e-103	304
MsG0180003243.01.T01	MTR_3g053170	67.273	220	72	0	34	253	26	245	5.67e-103	302
MsG0180003243.01.T01	MTR_5g093460	59.144	257	100	3	1	253	130	385	1.20e-99	298
MsG0180003243.01.T01	MTR_5g093460	68.182	132	41	1	30	161	1	131	2.94e-53	179
MsG0180003243.01.T01	MTR_1g043540	59.664	119	47	1	138	256	9	126	4.66e-42	140
MsG0180003243.01.T01	MTR_1g043500	47.619	63	32	1	192	253	3	65	4.28e-12	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003243.01.T01	AT3G20800	61.776	259	92	3	1	253	1	258	1.03e-103	304
MsG0180003243.01.T01	AT5G12980	60.784	255	97	2	1	253	1	254	3.76e-100	295
MsG0180003243.01.T01	AT2G32550	35.185	216	126	4	49	253	67	279	1.77e-35	129
MsG0180003243.01.T01	AT2G32550	35.122	205	119	4	60	253	39	240	4.84e-34	124
MsG0180003243.01.T01	AT2G32550	36.306	157	97	2	100	253	29	185	1.72e-29	111

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Find 48 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCATTATTCTTCAAGG+AGG	0.632490	1:+58971085	None:intergenic
AAGAACTCGCACCGTTATTG+TGG	0.516389	1:-58969956	MsG0180003243.01.T01:CDS
AATTCATTATTCTTCAAGGA+GGG	0.558130	1:+58971086	None:intergenic
ACATCTGCCTCCAGCACCAT+TGG	0.494495	1:-58971053	MsG0180003243.01.T01:CDS
AGAAAGGGATACAAATATAT+AGG	0.395209	1:+58968395	None:intergenic
AGCAGTTAAGATGGTGGAGT+TGG	0.389913	1:+58967749	None:intergenic
AGCTTTAAAAGACGAGGTGA+AGG	0.570450	1:+58967827	None:intergenic
AGTCATTGCTGCCATGGTAA+AGG	0.543352	1:-58968318	MsG0180003243.01.T01:intron
ATACAACATCTTGTTGCCAA+TGG	0.605197	1:+58971037	None:intergenic
ATAGAATAATACCTTTACCA+TGG	0.642599	1:+58968307	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGTCTCACAAAAAATGT+AGG	-	Chr1:58971076-58971095	MsG0180003243.01.T01:CDS	30.0%
ATATTCACAGGTTAAGACTA+AGG	-	Chr1:58970681-58970700	MsG0180003243.01.T01:intron	30.0%
CAAGTCTCACAAAAAATGTA+GGG	-	Chr1:58971077-58971096	MsG0180003243.01.T01:CDS	30.0%
CCCATAAATTGAAAGATGTA+TGG	+	Chr1:58967930-58967949	None:intergenic	30.0%
CCCATACATCTTTCAATTTA+TGG	-	Chr1:58967926-58967945	MsG0180003243.01.T01:CDS	30.0%
GAATTGTGAAAGTAAAAGGT+TGG	+	Chr1:58969133-58969152	None:intergenic	30.0%
GACAATGAATATGAGGAAAA+AGG	-	Chr1:58968481-58968500	MsG0180003243.01.T01:intron	30.0%
GAGGGAAAGTTAAAACTAAA+TGG	-	Chr1:58969177-58969196	MsG0180003243.01.T01:intron	30.0%
GCAAGTCTTAAATCTTCAAA+TGG	+	Chr1:58970517-58970536	None:intergenic	30.0%
GTTACAATCTTGTTAGTACT+TGG	-	Chr1:58968803-58968822	MsG0180003243.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	58967754	58971132	58967754	ID=MsG0180003243.01;Name=MsG0180003243.01
Chr1	mRNA	58967754	58971132	58967754	ID=MsG0180003243.01.T01;Parent=MsG0180003243.01;Name=MsG0180003243.01.T01;_AED=0.36;_eAED=0.37;_QI=0\|0\|0\|1\|1\|1\|7\|0\|265
Chr1	exon	58970968	58971132	58970968	ID=MsG0180003243.01.T01:exon:49100;Parent=MsG0180003243.01.T01
Chr1	exon	58969923	58969994	58969923	ID=MsG0180003243.01.T01:exon:49099;Parent=MsG0180003243.01.T01
Chr1	exon	58969433	58969522	58969433	ID=MsG0180003243.01.T01:exon:49098;Parent=MsG0180003243.01.T01
Chr1	exon	58969245	58969287	58969245	ID=MsG0180003243.01.T01:exon:49097;Parent=MsG0180003243.01.T01
Chr1	exon	58968319	58968425	58968319	ID=MsG0180003243.01.T01:exon:49096;Parent=MsG0180003243.01.T01
Chr1	exon	58968100	58968195	58968100	ID=MsG0180003243.01.T01:exon:49095;Parent=MsG0180003243.01.T01
Chr1	exon	58967754	58967978	58967754	ID=MsG0180003243.01.T01:exon:49094;Parent=MsG0180003243.01.T01
Chr1	CDS	58970968	58971132	58970968	ID=MsG0180003243.01.T01:cds;Parent=MsG0180003243.01.T01
Chr1	CDS	58969923	58969994	58969923	ID=MsG0180003243.01.T01:cds;Parent=MsG0180003243.01.T01
Chr1	CDS	58969433	58969522	58969433	ID=MsG0180003243.01.T01:cds;Parent=MsG0180003243.01.T01
Chr1	CDS	58969245	58969287	58969245	ID=MsG0180003243.01.T01:cds;Parent=MsG0180003243.01.T01
Chr1	CDS	58968319	58968425	58968319	ID=MsG0180003243.01.T01:cds;Parent=MsG0180003243.01.T01
Chr1	CDS	58968100	58968195	58968100	ID=MsG0180003243.01.T01:cds;Parent=MsG0180003243.01.T01
Chr1	CDS	58967754	58967978	58967754	ID=MsG0180003243.01.T01:cds;Parent=MsG0180003243.01.T01

Gene Sequence

>MsG0180003243.01.T01

ATGGCGAATTTCCCCCCTCAATCACCCTCCTTGAAGAATAATGAATTTTTTCCTGTTACATCTGCCTCCAGCACCATTGGCAACAAGATGTTGTATGCTGAGCGTCTTGTTATTGAACTGAGCAACCCCGATCTACGAGAAAATGCTCTTCATTTGCTCTCTAAGATGACAGATTTGTTTCAAGAACTCGCACCGTTATTGTGGACTTCAATTGGTACTATTGCAATATTTTTACAGGAAATAATTACAATATATCCTGCTCTTTCACCAGAAAATCTTACTGCTGCACAATCAACTCGAATATGCAATACTCTTGCTCTACTTCAGTGTGTGGCTTCCCACCCTAACACAAAGTTTTCATTCATGAAAGCTAACATACCTATATATTTGTATCCCTTTCTTAATACATCAAGTAAGTTAACTCCATTTGAAGATTTAAGACTTGCCAGTCTTGGAGTCATTGCTGCCATGGTAAAGGTTAAGACTAAGGAAGCGATAGGCTTCCTTCTCGCAACTGAAGTAATGCCGTTGTGCCTACGCAATATGGAAATTGGCAAAGAATTGTCAAAAACTGTTGCAACATTTATCGTTGAGAAAATTTTGTCAGATGATGATGGTTTGGCGTATGTTTGTGCTACACCAGATCGTTTTTTTGCAGTTGGTCGAGCTTTGGACAGGATGTTGGCAAGTGTTGACAATCAACCTTCACCTCGTCTTTTAAAGCTTATGATTCCGTGTTATACAAGTCTCACAAAAAATGTAGGGTTGTTTAAGCCGAACCCAACTCCACCATCTTAA

Protein sequence

>MsG0180003243.01.T01

MANFPPQSPSLKNNEFFPVTSASSTIGNKMLYAERLVIELSNPDLRENALHLLSKMTDLFQELAPLLWTSIGTIAIFLQEIITIYPALSPENLTAAQSTRICNTLALLQCVASHPNTKFSFMKANIPIYLYPFLNTSSKLTPFEDLRLASLGVIAAMVKVKTKEAIGFLLATEVMPLCLRNMEIGKELSKTVATFIVEKILSDDDGLAYVCATPDRFFAVGRALDRMLASVDNQPSPRLLKLMIPCYTSLTKNVGLFKPNPTPPS*