AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004159.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004159.01.T01 MTR_7g083950 54.574 317 102 8 7 318 10 289 3.23e-93 286
MsG0180004159.01.T01 MTR_3g006010 44.638 345 130 9 9 318 8 326 5.06e-72 233
MsG0180004159.01.T01 MTR_3g045700 56.557 244 77 4 90 330 3 220 5.45e-72 229
MsG0180004159.01.T01 MTR_3g045700 56.977 86 36 1 308 392 265 350 2.51e-24 103
MsG0180004159.01.T01 MTR_6g092140 43.731 327 132 11 11 318 10 303 1.23e-67 221
MsG0180004159.01.T01 MTR_6g091830 43.731 327 132 11 11 318 10 303 1.24e-67 221
MsG0180004159.01.T01 MTR_3g006120 50.431 232 85 7 91 318 4 209 1.63e-56 189
MsG0180004159.01.T01 MTR_4g133490 53.017 232 79 5 91 318 2 207 2.51e-55 186
MsG0180004159.01.T01 MTR_4g133490 50.000 76 35 2 320 392 273 348 4.78e-13 70.1
MsG0180004159.01.T01 MTR_1g100280 41.457 357 138 14 83 392 5 337 4.58e-55 185
MsG0180004159.01.T01 MTR_3g006180 50.000 222 81 5 101 318 1 196 9.33e-55 184
MsG0180004159.01.T01 MTR_1g109340 34.390 410 193 14 1 391 2 354 3.29e-54 183
MsG0180004159.01.T01 MTR_3g006100 49.138 232 88 7 91 318 4 209 5.42e-54 182
MsG0180004159.01.T01 MTR_3g006140 49.367 237 90 7 86 318 21 231 2.51e-53 181
MsG0180004159.01.T01 MTR_3g068220 47.639 233 89 6 90 318 3 206 3.74e-47 165
MsG0180004159.01.T01 MTR_7g070100 46.121 232 90 6 93 318 6 208 6.11e-45 159
MsG0180004159.01.T01 MTR_3g085910 37.662 308 121 12 89 358 1 275 4.52e-43 152
MsG0180004159.01.T01 MTR_1g093310 80.000 85 11 1 1 85 1 79 1.81e-39 135
MsG0180004159.01.T01 MTR_4g133320 54.545 165 70 4 158 318 4 167 1.30e-35 133
MsG0180004159.01.T01 MTR_4g133320 51.316 76 34 2 320 392 233 308 1.52e-13 71.2
MsG0180004159.01.T01 MTR_1g012330 45.685 197 66 7 194 385 1 161 1.82e-35 131
MsG0180004159.01.T01 MTR_6g088340 34.954 329 130 11 11 318 16 281 2.43e-35 135
MsG0180004159.01.T01 MTR_1g106050 59.200 125 25 3 91 215 2 100 7.72e-35 125
MsG0180004159.01.T01 MTR_1g089085 48.171 164 55 5 75 237 23 157 5.95e-34 124
MsG0180004159.01.T01 MTR_1g109090 47.305 167 58 6 86 248 10 150 2.33e-32 119
MsG0180004159.01.T01 MTR_3g086480 49.167 120 55 3 202 318 2 118 4.83e-22 94.7
MsG0180004159.01.T01 MTR_1g109520 34.715 193 87 3 217 391 5 176 6.37e-22 92.4
MsG0180004159.01.T01 MTR_6g011110 48.062 129 59 5 194 318 1 125 1.13e-21 94.4
MsG0180004159.01.T01 MTR_1g105960 64.179 67 24 0 11 77 3 69 2.99e-21 88.6
MsG0180004159.01.T01 MTR_8g062700 40.000 130 60 1 8 137 41 152 6.01e-21 95.9
MsG0180004159.01.T01 MTR_8g062700 40.000 130 60 1 8 137 41 152 6.01e-21 95.9
MsG0180004159.01.T01 MTR_5g036670 52.941 85 40 0 8 92 42 126 2.60e-19 90.9
MsG0180004159.01.T01 MTR_6g008970 60.563 71 28 0 8 78 62 132 7.30e-19 89.4
MsG0180004159.01.T01 MTR_4g133470 59.155 71 29 0 12 82 175 245 9.37e-19 85.5
MsG0180004159.01.T01 MTR_4g133470 48.611 72 34 1 8 79 11 79 1.31e-11 64.7
MsG0180004159.01.T01 MTR_4g133470 42.667 75 43 0 6 80 86 160 3.54e-11 63.5
MsG0180004159.01.T01 MTR_4g133300 59.155 71 29 0 12 82 175 245 1.01e-18 85.5
MsG0180004159.01.T01 MTR_4g133300 44.000 75 42 0 6 80 86 160 1.75e-12 67.4
MsG0180004159.01.T01 MTR_4g133300 48.611 72 34 1 8 79 11 79 1.34e-11 64.7
MsG0180004159.01.T01 MTR_6g008995 38.760 129 59 2 9 137 37 145 1.93e-17 84.3
MsG0180004159.01.T01 MTR_1g105955 52.113 71 34 0 5 75 12 82 4.94e-17 79.0
MsG0180004159.01.T01 MTR_1g105955 51.515 66 32 0 12 77 98 163 3.70e-14 70.9
MsG0180004159.01.T01 MTR_1g091047 52.308 65 30 1 8 71 8 72 1.83e-15 71.2
MsG0180004159.01.T01 MTR_8g062350 41.667 96 56 0 8 103 13 108 6.85e-15 73.2
MsG0180004159.01.T01 MTR_1g105010 45.714 70 38 0 8 77 15 84 7.83e-15 70.9
MsG0180004159.01.T01 MTR_3g006065 51.190 84 39 2 9 91 90 172 1.14e-14 72.4
MsG0180004159.01.T01 MTR_3g006065 43.750 96 50 2 9 103 8 100 1.84e-13 68.9
MsG0180004159.01.T01 MTR_3g006125 52.632 76 35 1 9 83 180 255 1.47e-14 73.6
MsG0180004159.01.T01 MTR_3g006150 43.750 96 50 2 9 103 8 100 1.84e-14 70.9
MsG0180004159.01.T01 MTR_3g006150 53.521 71 32 1 9 78 90 160 3.59e-13 67.4
MsG0180004159.01.T01 MTR_1g109550 46.988 83 36 2 1 76 1 82 1.91e-14 70.5
MsG0180004159.01.T01 MTR_3g006185 51.316 76 36 1 9 83 98 173 2.42e-14 71.2
MsG0180004159.01.T01 MTR_3g006185 35.714 126 73 3 9 126 8 133 3.94e-11 62.0
MsG0180004159.01.T01 MTR_1g104960 44.000 75 42 0 4 78 94 168 8.99e-14 69.3
MsG0180004159.01.T01 MTR_1g104940 42.697 89 48 1 9 94 14 102 1.01e-13 67.8
MsG0180004159.01.T01 MTR_7g013410 49.254 67 34 0 13 79 2 68 1.76e-13 67.8
MsG0180004159.01.T01 MTR_1g100260 47.619 84 40 2 10 89 25 108 2.20e-13 67.0
MsG0180004159.01.T01 MTR_2g097830 48.611 72 34 1 8 79 69 137 1.41e-12 65.9
MsG0180004159.01.T01 MTR_1g104980 37.209 86 50 1 12 97 73 154 1.87e-12 65.9
MsG0180004159.01.T01 MTR_6g008995 37.383 107 47 2 31 137 2 88 3.94e-12 67.8
MsG0180004159.01.T01 MTR_0128s0040 34.783 161 71 6 120 275 3 134 5.88e-12 63.2
MsG0180004159.01.T01 MTR_3g006105 50.000 76 37 1 9 83 99 174 1.57e-11 63.2
MsG0180004159.01.T01 MTR_3g006105 49.315 73 36 1 9 80 8 80 3.58e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004159.01.T01 AT1G24190 60.563 71 28 0 8 78 13 83 1.27e-19 91.7
MsG0180004159.01.T01 AT1G24190 60.563 71 28 0 8 78 13 83 1.34e-19 91.7
MsG0180004159.01.T01 AT1G24190 60.563 71 28 0 8 78 13 83 1.37e-19 91.7
MsG0180004159.01.T01 AT3G01320 61.972 71 27 0 8 78 56 126 1.91e-19 91.3
MsG0180004159.01.T01 AT3G01320 61.972 71 27 0 8 78 56 126 1.95e-19 91.3
MsG0180004159.01.T01 AT5G15020 40.000 130 58 2 8 137 51 160 2.19e-19 90.9
MsG0180004159.01.T01 AT5G15020 40.000 130 58 2 8 137 51 160 2.37e-19 90.9
MsG0180004159.01.T01 AT1G70060 59.155 71 29 0 8 78 13 83 6.04e-18 86.7
MsG0180004159.01.T01 AT1G70060 59.155 71 29 0 8 78 13 83 6.04e-18 86.7
MsG0180004159.01.T01 AT1G59890 57.143 70 30 0 9 78 45 114 2.20e-17 84.7
MsG0180004159.01.T01 AT1G59890 57.143 70 30 0 9 78 45 114 2.26e-17 84.7
MsG0180004159.01.T01 AT1G59890 57.143 70 30 0 9 78 45 114 2.26e-17 84.7
MsG0180004159.01.T01 AT1G59890 57.143 70 30 0 9 78 45 114 2.30e-17 84.7
MsG0180004159.01.T01 AT1G10450 52.703 74 35 0 5 78 80 153 1.10e-15 79.7
MsG0180004159.01.T01 AT1G24200 50.000 74 37 0 4 77 9 82 1.26e-15 75.5
MsG0180004159.01.T01 AT1G10450 52.703 74 35 0 5 78 29 102 1.30e-15 79.3
MsG0180004159.01.T01 AT1G10450 52.703 74 35 0 5 78 29 102 1.30e-15 79.3
MsG0180004159.01.T01 AT5G15025 52.113 71 34 0 8 78 46 116 2.04e-15 72.8
MsG0180004159.01.T01 AT4G12020 52.857 70 32 1 9 78 308 376 3.33e-14 75.1
MsG0180004159.01.T01 AT4G12020 52.857 70 32 1 9 78 308 376 4.79e-14 74.7
MsG0180004159.01.T01 AT4G12020 52.857 70 32 1 9 78 308 376 4.79e-14 74.7
MsG0180004159.01.T01 AT4G12020 52.857 70 32 1 9 78 308 376 4.79e-14 74.7
MsG0180004159.01.T01 AT4G12020 52.857 70 32 1 9 78 308 376 5.00e-14 74.7
MsG0180004159.01.T01 AT4G12020 52.857 70 32 1 9 78 308 376 5.02e-14 74.7
MsG0180004159.01.T01 AT4G12020 52.857 70 32 1 9 78 308 376 5.02e-14 74.7
MsG0180004159.01.T01 AT4G12020 52.857 70 32 1 9 78 308 376 5.06e-14 74.7
MsG0180004159.01.T01 AT4G12020 52.857 70 32 1 9 78 308 376 5.10e-14 74.7
MsG0180004159.01.T01 AT4G12020 52.857 70 32 1 9 78 308 376 5.10e-14 74.7
MsG0180004159.01.T01 AT4G12020 52.857 70 32 1 9 78 241 309 5.45e-14 74.7
MsG0180004159.01.T01 AT1G27220 46.753 77 41 0 8 84 13 89 6.06e-14 70.1
MsG0180004159.01.T01 AT1G27250 44.000 75 42 0 2 76 14 88 9.15e-14 68.6
MsG0180004159.01.T01 AT1G70030 43.617 94 52 1 9 101 22 115 9.38e-14 68.2
MsG0180004159.01.T01 AT1G70030 43.617 94 52 1 9 101 22 115 1.97e-13 67.4
MsG0180004159.01.T01 AT1G70030 43.617 94 52 1 9 101 11 104 3.06e-13 67.8
MsG0180004159.01.T01 AT5G15040 47.222 72 38 0 12 83 6 77 1.54e-12 63.5
MsG0180004159.01.T01 AT5G15040 47.222 72 38 0 12 83 6 77 1.54e-12 63.5
MsG0180004159.01.T01 AT5G15040 47.222 72 38 0 12 83 6 77 1.54e-12 63.5
MsG0180004159.01.T01 AT5G35610 40.000 100 57 2 13 111 14 111 8.76e-12 63.2

Find 78 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCTTTGTTCTTGTAAA+TGG 0.060967 1:+74204600 None:intergenic
AGGGCATACAAATTTAATTT+TGG 0.084238 1:-74207390 MsG0180004159.01.T01:CDS
AATATATGTTGTCACTTTAA+AGG 0.159016 1:-74204373 MsG0180004159.01.T01:CDS
AATTTATTGGAGAAATTTCT+TGG 0.238859 1:-74204886 MsG0180004159.01.T01:CDS
TATCCAACAATGGAAGATAA+AGG 0.272681 1:-74204429 MsG0180004159.01.T01:CDS
GACGATCTCTTTCAGATTGC+CGG 0.279132 1:-74204939 MsG0180004159.01.T01:CDS
TGACAACATATATTATATTA+TGG 0.302535 1:+74204382 None:intergenic
TCCCCTTTATCTTCCATTGT+TGG 0.306610 1:+74204426 None:intergenic
CCTTCTTTGTTCTTGTAAAT+GGG 0.316829 1:+74204601 None:intergenic
ACAATTATAATCGTTAATTC+TGG 0.320853 1:+74204563 None:intergenic
CAAGTTCTCTCATGTTTGAT+TGG 0.332623 1:-74204025 MsG0180004159.01.T01:CDS
ATTACGGTTTCAACTCTTGA+TGG 0.343245 1:-74204050 MsG0180004159.01.T01:CDS
TTGGTTGGATATGCTAATAA+AGG 0.350245 1:+74204734 None:intergenic
ATCCAACAATGGAAGATAAA+GGG 0.353972 1:-74204428 MsG0180004159.01.T01:CDS
GCAGTAAAGGAGCTGTTTAA+AGG 0.354318 1:-74207410 MsG0180004159.01.T01:CDS
CAAGATGTAGTGTGTATTCA+TGG 0.358881 1:-74204097 MsG0180004159.01.T01:CDS
GCCAGTCGATCATCATGGTT+TGG 0.374032 1:+74207548 None:intergenic
AGGGGAGGTGGTTGACTTTG+TGG 0.384633 1:-74204409 MsG0180004159.01.T01:CDS
AAATATTCTAATGAGTTTCA+AGG 0.393286 1:-74207465 MsG0180004159.01.T01:CDS
CCAGTCGATCATCATGGTTT+GGG 0.394292 1:+74207549 None:intergenic
CCATTCATCTCAAGTTGAAA+TGG 0.398941 1:+74207326 None:intergenic
AGTTTATTGCTTGAAGATGA+TGG 0.413789 1:-74204709 MsG0180004159.01.T01:CDS
CTCTCATATCCCCACAAGTT+CGG 0.416424 1:+74204152 None:intergenic
TTGCCGGTGTATGCAAGAAT+TGG 0.418933 1:-74204923 MsG0180004159.01.T01:CDS
CCATTTCAACTTGAGATGAA+TGG 0.420898 1:-74207326 MsG0180004159.01.T01:intron
GAAGAACCATTACTACTTCA+AGG 0.427911 1:-74204846 MsG0180004159.01.T01:CDS
AGTGTGATTTCATATTCCTT+TGG 0.438684 1:+74207350 None:intergenic
AGGTGTCGTGGCAGCAGTAA+AGG 0.441612 1:-74207423 MsG0180004159.01.T01:CDS
ATCAATCTCGAAATGGAGAA+TGG 0.449698 1:-74204458 MsG0180004159.01.T01:CDS
TTGAAGTAGTAATGGTTCTT+CGG 0.451189 1:+74204848 None:intergenic
CAGTAAAGGAGCTGTTTAAA+GGG 0.452750 1:-74207409 MsG0180004159.01.T01:CDS
CATGTCTATCAATCTCGAAA+TGG 0.454280 1:-74204465 MsG0180004159.01.T01:CDS
GATAGACATGCAAACGACTT+AGG 0.464364 1:+74204478 None:intergenic
TTCATATTCCTTTGGCAGGA+AGG 0.481854 1:+74207358 None:intergenic
TGATTTCATATTCCTTTGGC+AGG 0.483672 1:+74207354 None:intergenic
TATAATCGTTAATTCTGGTA+GGG 0.486354 1:+74204568 None:intergenic
CATCACATATAACGAGCCTT+AGG 0.496109 1:+74204315 None:intergenic
TGGTTCTTCGGATGCAAAGA+AGG 0.503168 1:+74204860 None:intergenic
CCCATTTACAAGAACAAAGA+AGG 0.506909 1:-74204601 MsG0180004159.01.T01:CDS
CTTGAACTCTGCACTACCTA+AGG 0.508046 1:-74204331 MsG0180004159.01.T01:CDS
GTCACTTTAAAGGCCAACAT+AGG 0.508490 1:-74204363 MsG0180004159.01.T01:CDS
CATGGACCTTGAAGTAGTAA+TGG 0.508755 1:+74204777 None:intergenic
TCACTTTAAAGGCCAACATA+GGG 0.509233 1:-74204362 MsG0180004159.01.T01:CDS
GATCAAATAATTGATATAAG+AGG 0.514741 1:-74207443 MsG0180004159.01.T01:CDS
CCGGTGTATGCAAGAATTGG+AGG 0.519798 1:-74204920 MsG0180004159.01.T01:CDS
TCAATCTCGAAATGGAGAAT+GGG 0.520958 1:-74204457 MsG0180004159.01.T01:CDS
CGTGATCCCTTGCCACGACA+TGG 0.533777 1:+74204822 None:intergenic
CAGGGCAAATCCGAACTTGT+GGG 0.534564 1:-74204162 MsG0180004159.01.T01:CDS
CCCAAACCATGATGATCGAC+TGG 0.536475 1:-74207549 MsG0180004159.01.T01:CDS
ATGCTCAGAAGAATTTGTCT+TGG 0.539972 1:-74204511 MsG0180004159.01.T01:CDS
CATGATCCCTTGCCACGACA+TGG 0.542877 1:+74204759 None:intergenic
TTATAATCGTTAATTCTGGT+AGG 0.549006 1:+74204567 None:intergenic
TCAGGGCAAATCCGAACTTG+TGG 0.550772 1:-74204163 MsG0180004159.01.T01:intron
CATGGACCTTGAAGTAGTAA+TGG 0.552113 1:+74204840 None:intergenic
TCAAGGTCCATGTCGTGGCA+AGG 0.558917 1:-74204766 MsG0180004159.01.T01:CDS
TCAAGGTCCATGTCGTGGCA+AGG 0.558917 1:-74204829 MsG0180004159.01.T01:CDS
CAAGGTCCATGTCGTGGCAA+GGG 0.560575 1:-74204765 MsG0180004159.01.T01:CDS
CAAGGTCCATGTCGTGGCAA+GGG 0.560575 1:-74204828 MsG0180004159.01.T01:CDS
ATAATCGTTAATTCTGGTAG+GGG 0.560868 1:+74204569 None:intergenic
TCCAACAATGGAAGATAAAG+GGG 0.575396 1:-74204427 MsG0180004159.01.T01:CDS
CGGTGTATGCAAGAATTGGA+GGG 0.575557 1:-74204919 MsG0180004159.01.T01:CDS
CAAGCTGAGTACCCCTATGT+TGG 0.581306 1:+74204350 None:intergenic
AGAGAATTGTGAACTTCCAT+CGG 0.590739 1:-74204997 MsG0180004159.01.T01:CDS
AATGGAAGATAAAGGGGAGG+TGG 0.597366 1:-74204421 MsG0180004159.01.T01:CDS
CACTTTAAAGGCCAACATAG+GGG 0.601541 1:-74204361 MsG0180004159.01.T01:CDS
ATGATATCAAGCACATCCGA+TGG 0.604883 1:+74204981 None:intergenic
ATTCAACACCTTCCTGCCAA+AGG 0.606143 1:-74207366 MsG0180004159.01.T01:CDS
AATTGATATAAGAGGTGTCG+TGG 0.607984 1:-74207435 MsG0180004159.01.T01:CDS
GCATTTGTCTAAAGCAAGCA+AGG 0.619577 1:+74204530 None:intergenic
AGGGCAAATCCGAACTTGTG+GGG 0.620570 1:-74204161 MsG0180004159.01.T01:CDS
GATATGCCAGTCGATCATCA+TGG 0.626717 1:+74207543 None:intergenic
CAGTCGATCATCATGGTTTG+GGG 0.647099 1:+74207550 None:intergenic
AAGAGATCGTCAAAATCTAG+TGG 0.648143 1:+74204951 None:intergenic
CTACTTCAAGGTCCATGTCG+TGG 0.651161 1:-74204771 MsG0180004159.01.T01:CDS
CTACTTCAAGGTCCATGTCG+TGG 0.651161 1:-74204834 MsG0180004159.01.T01:CDS
CCTCCAATTCTTGCATACAC+CGG 0.651637 1:+74204920 None:intergenic
AAGATGTAGTGTGTATTCAT+GGG 0.670579 1:-74204096 MsG0180004159.01.T01:CDS
AACAATGGAAGATAAAGGGG+AGG 0.697994 1:-74204424 MsG0180004159.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATACTATTAAATAG+CGG + Chr1:74204888-74204907 None:intergenic 10.0%
!!! TTTAATAGTATTTTAATTAG+GGG - Chr1:74204891-74204910 MsG0180004159.01.T01:CDS 10.0%
!! AACAAAAACAAAAAATGAAA+AGG + Chr1:74205938-74205957 None:intergenic 15.0%
!! ATCAAATTATTCTCTAAATT+AGG + Chr1:74204401-74204420 None:intergenic 15.0%
!! ATTTAGAGAATAATTTGATT+AGG - Chr1:74204402-74204421 MsG0180004159.01.T01:CDS 15.0%
!! TGACAACATATATTATATTA+TGG + Chr1:74207158-74207177 None:intergenic 15.0%
!! TGTTAAAAGAAAAAGAAAAT+GGG + Chr1:74204737-74204756 None:intergenic 15.0%
!! TTGTTAAAAGAAAAAGAAAA+TGG + Chr1:74204738-74204757 None:intergenic 15.0%
!!! AATTTCTCCAATAAATTTTA+TGG + Chr1:74206648-74206667 None:intergenic 15.0%
!!! TTTCATTTTTTGTTTTTGTT+GGG - Chr1:74205938-74205957 MsG0180004159.01.T01:intron 15.0%
!!! TTTTCATTTTTTGTTTTTGT+TGG - Chr1:74205937-74205956 MsG0180004159.01.T01:intron 15.0%
!! AAAGTTGCAAAAATGTATTA+CGG - Chr1:74207471-74207490 MsG0180004159.01.T01:CDS 20.0%
!! AAATATTCTAATGAGTTTCA+AGG - Chr1:74204072-74204091 MsG0180004159.01.T01:CDS 20.0%
!! AATTTATTGGAGAAATTTCT+TGG - Chr1:74206651-74206670 MsG0180004159.01.T01:intron 20.0%
!! ACAATTATAATCGTTAATTC+TGG + Chr1:74206977-74206996 None:intergenic 20.0%
!! GATCAAATAATTGATATAAG+AGG - Chr1:74204094-74204113 MsG0180004159.01.T01:CDS 20.0%
!! TATGTTAAACTGAAAACTTT+GGG - Chr1:74207319-74207338 MsG0180004159.01.T01:intron 20.0%
!! TTAAATTGTTCAATCTTTGT+TGG - Chr1:74204358-74204377 MsG0180004159.01.T01:CDS 20.0%
!! TTATGTTAAACTGAAAACTT+TGG - Chr1:74207318-74207337 MsG0180004159.01.T01:intron 20.0%
!! TTATTTAATTGTAGAGTTTC+CGG + Chr1:74204628-74204647 None:intergenic 20.0%
!! TTTCAGTTTAACATAATTCA+TGG + Chr1:74207314-74207333 None:intergenic 20.0%
!!! AATATATGTTGTCACTTTAA+AGG - Chr1:74207164-74207183 MsG0180004159.01.T01:intron 20.0%
!!! ATCTATTGTTTTCAATACAT+TGG - Chr1:74206042-74206061 MsG0180004159.01.T01:intron 20.0%
!!! ATCTTTGAAGTATTAAACTA+GGG - Chr1:74204532-74204551 MsG0180004159.01.T01:CDS 20.0%
!!! ATTTGATAGTATCTCAATTA+TGG - Chr1:74205050-74205069 MsG0180004159.01.T01:intron 20.0%
!!! TATCTTTGAAGTATTAAACT+AGG - Chr1:74204531-74204550 MsG0180004159.01.T01:CDS 20.0%
!!! TATTTTCAGCTTGTATTTTT+TGG - Chr1:74204772-74204791 MsG0180004159.01.T01:CDS 20.0%
!!! TATTTTTGTTTGGAGAAAAT+GGG - Chr1:74206144-74206163 MsG0180004159.01.T01:intron 20.0%
!!! TTCATTTTTTGTTTTTGTTG+GGG - Chr1:74205939-74205958 MsG0180004159.01.T01:intron 20.0%
!!! TTCTCTTTATGTTTTGTTTT+AGG - Chr1:74204989-74205008 MsG0180004159.01.T01:CDS 20.0%
!!! TTTGATAGTATCTCAATTAT+GGG - Chr1:74205051-74205070 MsG0180004159.01.T01:intron 20.0%
! AAAAAGAGAACAAAGAACAT+AGG - Chr1:74205819-74205838 MsG0180004159.01.T01:intron 25.0%
! AATACAAGCTGAAAATAATG+AGG + Chr1:74204769-74204788 None:intergenic 25.0%
! AATCCATGCATAATTAAAGT+GGG + Chr1:74205270-74205289 None:intergenic 25.0%
! AATGTCATATATACAACTAG+AGG + Chr1:74204339-74204358 None:intergenic 25.0%
! AATGTTAGGTGATTTCTAAA+AGG + Chr1:74206481-74206500 None:intergenic 25.0%
! ACTATTTACATGGAAAAAAG+AGG - Chr1:74206090-74206109 MsG0180004159.01.T01:intron 25.0%
! AGGATTAAAGACATATGAAA+AGG + Chr1:74205918-74205937 None:intergenic 25.0%
! AGTAAGTTTAGTAAACCTAT+CGG + Chr1:74205244-74205263 None:intergenic 25.0%
! CACGTATTTGTATTATATGA+TGG - Chr1:74206117-74206136 MsG0180004159.01.T01:intron 25.0%
! CTGTTTATCTGATAATATCA+AGG + Chr1:74206199-74206218 None:intergenic 25.0%
! CTTAATCCATCAATTAGTTA+TGG + Chr1:74204432-74204451 None:intergenic 25.0%
! GGCAAAATAAACTATTTACA+TGG - Chr1:74206080-74206099 MsG0180004159.01.T01:intron 25.0%
! TATAATCGTTAATTCTGGTA+GGG + Chr1:74206972-74206991 None:intergenic 25.0%
! TATTTGTTCTTTAGGCTTAA+TGG + Chr1:74204806-74204825 None:intergenic 25.0%
! TCCAAAAAATGATCAAATAG+CGG + Chr1:74205555-74205574 None:intergenic 25.0%
! TTATAATCGTTAATTCTGGT+AGG + Chr1:74206973-74206992 None:intergenic 25.0%
! TTATGATGCTGATAATTTCA+GGG - Chr1:74207357-74207376 MsG0180004159.01.T01:CDS 25.0%
! TTTATGATGCTGATAATTTC+AGG - Chr1:74207356-74207375 MsG0180004159.01.T01:CDS 25.0%
!! AATTTTTGTGAGGATGAAAA+TGG - Chr1:74206017-74206036 MsG0180004159.01.T01:intron 25.0%
!! ATGTTAGGTGATTTCTAAAA+GGG + Chr1:74206480-74206499 None:intergenic 25.0%
!! ATTTACTTGATGTGATTTTC+TGG - Chr1:74205343-74205362 MsG0180004159.01.T01:intron 25.0%
!! CTAGAATGTTAATTTTTGTG+AGG - Chr1:74206007-74206026 MsG0180004159.01.T01:intron 25.0%
!! GGGTTTTCCATAAAATTTAT+TGG - Chr1:74206638-74206657 MsG0180004159.01.T01:intron 25.0%
!! GTTTTTCTTTCTTTCAGTTA+GGG - Chr1:74205011-74205030 MsG0180004159.01.T01:CDS 25.0%
!! TCTTCAAGCAATAAACTTTT+TGG + Chr1:74206825-74206844 None:intergenic 25.0%
!! TGTTCTTTTTCTTTTTCCTA+TGG + Chr1:74204674-74204693 None:intergenic 25.0%
!! TTTTTCTTTCTTTCAGTTAG+GGG - Chr1:74205012-74205031 MsG0180004159.01.T01:CDS 25.0%
!!! AATGTTTTGATTAAGACTTG+TGG + Chr1:74205769-74205788 None:intergenic 25.0%
!!! AGGGCATACAAATTTAATTT+TGG - Chr1:74204147-74204166 MsG0180004159.01.T01:CDS 25.0%
!!! GGGCATACAAATTTAATTTT+GGG - Chr1:74204148-74204167 MsG0180004159.01.T01:CDS 25.0%
!!! GTATTTTTGTTTGGAGAAAA+TGG - Chr1:74206143-74206162 MsG0180004159.01.T01:intron 25.0%
!!! TCTTTGAAGTATTAAACTAG+GGG - Chr1:74204533-74204552 MsG0180004159.01.T01:CDS 25.0%
AAGAATGTGTTCAAGATAGA+AGG - Chr1:74207283-74207302 MsG0180004159.01.T01:intron 30.0%
AAGATGTAGTGTGTATTCAT+GGG - Chr1:74207441-74207460 MsG0180004159.01.T01:CDS 30.0%
AGAAAAGATCGGATAATGTT+TGG + Chr1:74205123-74205142 None:intergenic 30.0%
AGAAATCACCTAACAATAGA+GGG - Chr1:74206261-74206280 MsG0180004159.01.T01:intron 30.0%
AGTGTGATTTCATATTCCTT+TGG + Chr1:74204190-74204209 None:intergenic 30.0%
AGTTTATTGCTTGAAGATGA+TGG - Chr1:74206828-74206847 MsG0180004159.01.T01:intron 30.0%
ATAATCGTTAATTCTGGTAG+GGG + Chr1:74206971-74206990 None:intergenic 30.0%
ATCACAACAACAACAATGTT+AGG + Chr1:74206495-74206514 None:intergenic 30.0%
ATCCAACAATGGAAGATAAA+GGG - Chr1:74207109-74207128 MsG0180004159.01.T01:intron 30.0%
ATGCAAAGGAAAAAGATTGA+AGG - Chr1:74206513-74206532 MsG0180004159.01.T01:intron 30.0%
CAAAATTCAAACCAAACTGA+AGG - Chr1:74205152-74205171 MsG0180004159.01.T01:intron 30.0%
CAACTAGAGGACTAATATTA+TGG + Chr1:74204326-74204345 None:intergenic 30.0%
CCTTCTTTGTTCTTGTAAAT+GGG + Chr1:74206939-74206958 None:intergenic 30.0%
CTAAAAGAAGAAATCACCAT+AGG - Chr1:74204655-74204674 MsG0180004159.01.T01:CDS 30.0%
CTGATAATATCAAGGAAATG+AGG + Chr1:74206191-74206210 None:intergenic 30.0%
CTTACAACCGTAAAATATTC+CGG - Chr1:74204606-74204625 MsG0180004159.01.T01:CDS 30.0%
GAAAAACCATTACTACTTCA+AGG - Chr1:74206754-74206773 MsG0180004159.01.T01:intron 30.0%
GAATCCATGCATAATTAAAG+TGG + Chr1:74205271-74205290 None:intergenic 30.0%
GGAAAAAGAAAAAGAACAAG+AGG - Chr1:74204676-74204695 MsG0180004159.01.T01:CDS 30.0%
GGATTTGAATGTAATGTTTG+TGG + Chr1:74205682-74205701 None:intergenic 30.0%
GGTTATCCATAACTAATTGA+TGG - Chr1:74204423-74204442 MsG0180004159.01.T01:CDS 30.0%
TAGAAATCACCTAACAATAG+AGG - Chr1:74206260-74206279 MsG0180004159.01.T01:intron 30.0%
TATCCAACAATGGAAGATAA+AGG - Chr1:74207108-74207127 MsG0180004159.01.T01:intron 30.0%
TCACATGACAACAACTTTAA+CGG + Chr1:74206325-74206344 None:intergenic 30.0%
TCCTTCTTTGTTCTTGTAAA+TGG + Chr1:74206940-74206959 None:intergenic 30.0%
TGCTCTTTGTAACCTTATTA+TGG + Chr1:74205390-74205409 None:intergenic 30.0%
TTGAAGTAGTAATGGTTCTT+CGG + Chr1:74206692-74206711 None:intergenic 30.0%
TTGGTTGGATATGCTAATAA+AGG + Chr1:74206806-74206825 None:intergenic 30.0%
TTTATTTCCCTGACATTTGT+TGG + Chr1:74205710-74205729 None:intergenic 30.0%
! AGAGTTTCCGGAATATTTTA+CGG + Chr1:74204616-74204635 None:intergenic 30.0%
! ATCTACGTTACATTTTCTAG+CGG - Chr1:74206871-74206890 MsG0180004159.01.T01:intron 30.0%
! CTTTAGGCTTAATGGATAAT+GGG + Chr1:74204798-74204817 None:intergenic 30.0%
! GGTTTTTCTTTCTTTCAGTT+AGG - Chr1:74205010-74205029 MsG0180004159.01.T01:CDS 30.0%
! TAAGACTTGTGGAATTTTGT+TGG + Chr1:74205758-74205777 None:intergenic 30.0%
! TATATGTGATGAGCAACTTT+TGG - Chr1:74207234-74207253 MsG0180004159.01.T01:intron 30.0%
! TCTTTAGGCTTAATGGATAA+TGG + Chr1:74204799-74204818 None:intergenic 30.0%
! TTATCCGATCTTTTCTTGTT+TGG - Chr1:74205127-74205146 MsG0180004159.01.T01:intron 30.0%
!! AACTTTTGGTGGTTAATGTA+AGG - Chr1:74207248-74207267 MsG0180004159.01.T01:intron 30.0%
!! AGCTGAAAGCACTAAATATT+AGG + Chr1:74205989-74206008 None:intergenic 30.0%
!! CAAGCAATAAACTTTTTGGT+TGG + Chr1:74206821-74206840 None:intergenic 30.0%
!! GTTGATTTGTTCAACAAGTT+AGG - Chr1:74205458-74205477 MsG0180004159.01.T01:intron 30.0%
!! TATCCGATCTTTTCTTGTTT+GGG - Chr1:74205128-74205147 MsG0180004159.01.T01:intron 30.0%
!! TGATGGTCTGTATTTTTGTT+TGG - Chr1:74206134-74206153 MsG0180004159.01.T01:intron 30.0%
!! TTCTAGCGGATATTTTATCA+TGG - Chr1:74206885-74206904 MsG0180004159.01.T01:intron 30.0%
!!! ACCGCTATTTGATCATTTTT+TGG - Chr1:74205551-74205570 MsG0180004159.01.T01:intron 30.0%
!!! ATGGGTTTTTTATCCAACAA+TGG - Chr1:74207098-74207117 MsG0180004159.01.T01:intron 30.0%
!!! ATTTTAATTAGGGGTGTAAG+TGG - Chr1:74204900-74204919 MsG0180004159.01.T01:CDS 30.0%
!!! TTTTTAGTTCCTCTGTTCTT+TGG + Chr1:74205803-74205822 None:intergenic 30.0%
AAACAAAATGGTTGCACAGA+GGG + Chr1:74204704-74204723 None:intergenic 35.0%
AAAGAACAAATACCATGGGA+TGG - Chr1:74204814-74204833 MsG0180004159.01.T01:CDS 35.0%
AACCAAAAATCATGGCATTG+CGG + Chr1:74204291-74204310 None:intergenic 35.0%
AAGAGATCGTCAAAATCTAG+TGG + Chr1:74206589-74206608 None:intergenic 35.0%
AAGCCCACTTTAATTATGCA+TGG - Chr1:74205264-74205283 MsG0180004159.01.T01:intron 35.0%
AATTATGGGTGTAAGTGGTT+TGG - Chr1:74205065-74205084 MsG0180004159.01.T01:intron 35.0%
ACAAGCTGAAAATAATGAGG+AGG + Chr1:74204766-74204785 None:intergenic 35.0%
AGAGAATTGTGAACTTCCAT+CGG - Chr1:74206540-74206559 MsG0180004159.01.T01:intron 35.0%
AGATCGGATAATGTTTGGTT+TGG + Chr1:74205118-74205137 None:intergenic 35.0%
AGCCTAAAGAACAAATACCA+TGG - Chr1:74204809-74204828 MsG0180004159.01.T01:CDS 35.0%
ATCAATCTCGAAATGGAGAA+TGG - Chr1:74207079-74207098 MsG0180004159.01.T01:intron 35.0%
ATCTCAATTATGGGTGTAAG+TGG - Chr1:74205060-74205079 MsG0180004159.01.T01:intron 35.0%
ATGCTCAGAAGAATTTGTCT+TGG - Chr1:74207026-74207045 MsG0180004159.01.T01:intron 35.0%
ATTACGGTTTCAACTCTTGA+TGG - Chr1:74207487-74207506 MsG0180004159.01.T01:CDS 35.0%
CAAGATGTAGTGTGTATTCA+TGG - Chr1:74207440-74207459 MsG0180004159.01.T01:CDS 35.0%
CAAGTTCTCTCATGTTTGAT+TGG - Chr1:74207512-74207531 MsG0180004159.01.T01:CDS 35.0%
CAGTAAAGGAGCTGTTTAAA+GGG - Chr1:74204128-74204147 MsG0180004159.01.T01:CDS 35.0%
CATCATACTACACACTTTAC+AGG + Chr1:74205415-74205434 None:intergenic 35.0%
CATGTCTATCAATCTCGAAA+TGG - Chr1:74207072-74207091 MsG0180004159.01.T01:intron 35.0%
CCAAATACCAACAAATGTCA+GGG - Chr1:74205700-74205719 MsG0180004159.01.T01:intron 35.0%
CCATTTCAACTTGAGATGAA+TGG - Chr1:74204211-74204230 MsG0180004159.01.T01:intron 35.0%
CCCATTTACAAGAACAAAGA+AGG - Chr1:74206936-74206955 MsG0180004159.01.T01:intron 35.0%
CTAGAGGACTAATATTATGG+TGG + Chr1:74204323-74204342 None:intergenic 35.0%
CTTTGTTGGATTGAGACATA+CGG - Chr1:74204372-74204391 MsG0180004159.01.T01:CDS 35.0%
GAAATCACCTAACAATAGAG+GGG - Chr1:74206262-74206281 MsG0180004159.01.T01:intron 35.0%
GAAGAACCATTACTACTTCA+AGG - Chr1:74206691-74206710 MsG0180004159.01.T01:intron 35.0%
GCCTAAAGAACAAATACCAT+GGG - Chr1:74204810-74204829 MsG0180004159.01.T01:CDS 35.0%
GGAATGATATGGCCATAATA+AGG - Chr1:74205375-74205394 MsG0180004159.01.T01:intron 35.0%
GGTAAGCCAAACAAACAAAA+TGG + Chr1:74204716-74204735 None:intergenic 35.0%
GGTTGTAAGACAAGTGTTAT+CGG + Chr1:74204595-74204614 None:intergenic 35.0%
GTGAATTCTTGCTTCAATCT+TGG - Chr1:74205298-74205317 MsG0180004159.01.T01:intron 35.0%
TATGAAAAGGTCAATTAGCG+AGG + Chr1:74205905-74205924 None:intergenic 35.0%
TCAATCTCGAAATGGAGAAT+GGG - Chr1:74207080-74207099 MsG0180004159.01.T01:intron 35.0%
TCCAAATACCAACAAATGTC+AGG - Chr1:74205699-74205718 MsG0180004159.01.T01:intron 35.0%
TCCAACAATGGAAGATAAAG+GGG - Chr1:74207110-74207129 MsG0180004159.01.T01:intron 35.0%
TCCCATGGTATTTGTTCTTT+AGG + Chr1:74204814-74204833 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - Chr1:74206380-74206399 MsG0180004159.01.T01:intron 35.0%
TGACCCAAACAAGAAAAGAT+CGG + Chr1:74205134-74205153 None:intergenic 35.0%
TGATTTCATATTCCTTTGGC+AGG + Chr1:74204186-74204205 None:intergenic 35.0%
TGGCAACAAACCAAAAATCA+TGG + Chr1:74204299-74204318 None:intergenic 35.0%
! AGGACTAATATTATGGTGGA+TGG + Chr1:74204319-74204338 None:intergenic 35.0%
! CGGATATTTTATCATGGTGA+GGG - Chr1:74206891-74206910 MsG0180004159.01.T01:intron 35.0%
! GTTTAGTAAACCTATCGGTT+TGG + Chr1:74205239-74205258 None:intergenic 35.0%
! TCACTTTAAAGGCCAACATA+GGG - Chr1:74207175-74207194 MsG0180004159.01.T01:intron 35.0%
! TTCGTGCATTTTATGTCCTT+GGG - Chr1:74204556-74204575 MsG0180004159.01.T01:CDS 35.0%
! TTGTTGTTGTTGTGATGCAA+AGG - Chr1:74206499-74206518 MsG0180004159.01.T01:intron 35.0%
!! AACCTATCGGTTTGGTTTAT+CGG + Chr1:74205231-74205250 None:intergenic 35.0%
!! AATTGATATAAGAGGTGTCG+TGG - Chr1:74204102-74204121 MsG0180004159.01.T01:CDS 35.0%
!! CCATTCATCTCAAGTTGAAA+TGG + Chr1:74204214-74204233 None:intergenic 35.0%
!! GAAAACGAGTTGGATTAGTT+CGG - Chr1:74205174-74205193 MsG0180004159.01.T01:intron 35.0%
!! GGATAATGTTTGGTTTGGTT+TGG + Chr1:74205113-74205132 None:intergenic 35.0%
!! GGTTTGGTTTATCGGTTTAT+TGG + Chr1:74205223-74205242 None:intergenic 35.0%
!! GTGCAACCATTTTGTTTGTT+TGG - Chr1:74204707-74204726 MsG0180004159.01.T01:CDS 35.0%
!! TGGTTTTTCAGATGCAAAGA+AGG + Chr1:74206743-74206762 None:intergenic 35.0%
!!! GGAGTTGTTTTGGAATGATA+TGG - Chr1:74205364-74205383 MsG0180004159.01.T01:intron 35.0%
!!! GTGATTTTCTGGAGTTGTTT+TGG - Chr1:74205354-74205373 MsG0180004159.01.T01:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + Chr1:74206381-74206400 None:intergenic 35.0%
!!! TTTGTTTTTGTTGGGGTGTA+GGG - Chr1:74205946-74205965 MsG0180004159.01.T01:intron 35.0%
!!! TTTTGTTTTTGTTGGGGTGT+AGG - Chr1:74205945-74205964 MsG0180004159.01.T01:intron 35.0%
AACAATGGAAGATAAAGGGG+AGG - Chr1:74207113-74207132 MsG0180004159.01.T01:intron 40.0%
AACCGATAAACCAAACCGAT+AGG - Chr1:74205226-74205245 MsG0180004159.01.T01:intron 40.0%
AAGGTTACCCCTCTATTGTT+AGG + Chr1:74206272-74206291 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - Chr1:74206374-74206393 MsG0180004159.01.T01:intron 40.0%
ATGATATCAAGCACATCCGA+TGG + Chr1:74206559-74206578 None:intergenic 40.0%
CAAACAAAATGGTTGCACAG+AGG + Chr1:74204705-74204724 None:intergenic 40.0%
CAAACTGAAGGAAAACGAGT+TGG - Chr1:74205164-74205183 MsG0180004159.01.T01:intron 40.0%
CAACTTTACCAATTACGCCA+AGG + Chr1:74206291-74206310 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - Chr1:74206375-74206394 MsG0180004159.01.T01:intron 40.0%
CATCACATATAACGAGCCTT+AGG + Chr1:74207225-74207244 None:intergenic 40.0%
CATGGACCTTGAAGTAGTAA+TGG + Chr1:74206700-74206719 None:intergenic 40.0%
CATTGGCATGATCACGAAAA+TGG - Chr1:74206059-74206078 MsG0180004159.01.T01:intron 40.0%
GATAGACATGCAAACGACTT+AGG + Chr1:74207062-74207081 None:intergenic 40.0%
GCAGTAAAGGAGCTGTTTAA+AGG - Chr1:74204127-74204146 MsG0180004159.01.T01:CDS 40.0%
TAACAATAGAGGGGTAACCT+TGG - Chr1:74206271-74206290 MsG0180004159.01.T01:intron 40.0%
TAGGAAGATAGATTCCGTAG+CGG - Chr1:74205838-74205857 MsG0180004159.01.T01:intron 40.0%
TCCAAAAGACCAAAGAACAG+AGG - Chr1:74205791-74205810 MsG0180004159.01.T01:intron 40.0%
TCCCCTTTATCTTCCATTGT+TGG + Chr1:74207114-74207133 None:intergenic 40.0%
TGGTGGTTAATGTAAGGCAT+AGG - Chr1:74207254-74207273 MsG0180004159.01.T01:intron 40.0%
TGTAAGACAAGTGTTATCGG+TGG + Chr1:74204592-74204611 None:intergenic 40.0%
TTCATATTCCTTTGGCAGGA+AGG + Chr1:74204182-74204201 None:intergenic 40.0%
! AATTAGGGGTGTAAGTGGTT+CGG - Chr1:74204905-74204924 MsG0180004159.01.T01:CDS 40.0%
! ATGTGATGAGCAACTTTTGG+TGG - Chr1:74207237-74207256 MsG0180004159.01.T01:intron 40.0%
! CAACTCGTTTTCCTTCAGTT+TGG + Chr1:74205166-74205185 None:intergenic 40.0%
! CACTTTAAAGGCCAACATAG+GGG - Chr1:74207176-74207195 MsG0180004159.01.T01:intron 40.0%
! CCCTGACATTTGTTGGTATT+TGG + Chr1:74205703-74205722 None:intergenic 40.0%
! GCATTTGTCTAAAGCAAGCA+AGG + Chr1:74207010-74207029 None:intergenic 40.0%
! GCGGATATTTTATCATGGTG+AGG - Chr1:74206890-74206909 MsG0180004159.01.T01:intron 40.0%
! GTAAGTGGTTTGGACAAAAC+CGG - Chr1:74205075-74205094 MsG0180004159.01.T01:intron 40.0%
! GTCACTTTAAAGGCCAACAT+AGG - Chr1:74207174-74207193 MsG0180004159.01.T01:intron 40.0%
! GTTCGTGCATTTTATGTCCT+TGG - Chr1:74204555-74204574 MsG0180004159.01.T01:CDS 40.0%
! TGATTTCTAAAAGGGCAACC+CGG + Chr1:74206472-74206491 None:intergenic 40.0%
!! AGTTGGATTAGTTCGGTTCT+TGG - Chr1:74205181-74205200 MsG0180004159.01.T01:intron 40.0%
!! TATACGCCATCCCACTTTTA+GGG + Chr1:74205523-74205542 None:intergenic 40.0%
!! TCCTCTGTTCTTTGGTCTTT+TGG + Chr1:74205795-74205814 None:intergenic 40.0%
!!! GGTTTGGTTTTAGAGTTCAC+CGG + Chr1:74205097-74205116 None:intergenic 40.0%
!!! TTGTTTTTGTTGGGGTGTAG+GGG - Chr1:74205947-74205966 MsG0180004159.01.T01:intron 40.0%
AATGGAAGATAAAGGGGAGG+TGG - Chr1:74207116-74207135 MsG0180004159.01.T01:intron 45.0%
ATTCAACACCTTCCTGCCAA+AGG - Chr1:74204171-74204190 MsG0180004159.01.T01:intron 45.0%
CAGTCGATCATCATGGTTTG+GGG + Chr1:74203990-74204009 None:intergenic 45.0%
CCACGTAATTTCCCTACAAG+CGG + Chr1:74205871-74205890 None:intergenic 45.0%
CCAGTCGATCATCATGGTTT+GGG + Chr1:74203991-74204010 None:intergenic 45.0%
CCTCCAATTCTTGCATACAC+CGG + Chr1:74206620-74206639 None:intergenic 45.0%
CGGTGTATGCAAGAATTGGA+GGG - Chr1:74206618-74206637 MsG0180004159.01.T01:intron 45.0%
CGTACAATACGCCAAATGGT+GGG - Chr1:74206406-74206425 MsG0180004159.01.T01:intron 45.0%
CTCTCATATCCCCACAAGTT+CGG + Chr1:74207388-74207407 None:intergenic 45.0%
CTTGAACTCTGCACTACCTA+AGG - Chr1:74207206-74207225 MsG0180004159.01.T01:intron 45.0%
GACGATCTCTTTCAGATTGC+CGG - Chr1:74206598-74206617 MsG0180004159.01.T01:intron 45.0%
GACTTGAACTCGTGACCTTA+CGG + Chr1:74206348-74206367 None:intergenic 45.0%
GAGAGAGCAAAGAAGAGAGA+TGG + Chr1:74204962-74204981 None:intergenic 45.0%
GATATGCCAGTCGATCATCA+TGG + Chr1:74203997-74204016 None:intergenic 45.0%
GCGCTATTAACTACCTAGGT+TGG + Chr1:74204840-74204859 None:intergenic 45.0%
GTTGTTGTCATGTGACCGTA+AGG - Chr1:74206330-74206349 MsG0180004159.01.T01:intron 45.0%
TAGCGCGCTATTAACTACCT+AGG + Chr1:74204844-74204863 None:intergenic 45.0%
TGGTTCTTCGGATGCAAAGA+AGG + Chr1:74206680-74206699 None:intergenic 45.0%
TTGCCGGTGTATGCAAGAAT+TGG - Chr1:74206614-74206633 MsG0180004159.01.T01:intron 45.0%
TTTCAGTTAGGGGTGAGCTT+TGG - Chr1:74205022-74205041 MsG0180004159.01.T01:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + Chr1:74206370-74206389 None:intergenic 45.0%
!! CTATACGCCATCCCACTTTT+AGG + Chr1:74205524-74205543 None:intergenic 45.0%
!! GGTTTGTTTCTGATGCATCC+CGG - Chr1:74205479-74205498 MsG0180004159.01.T01:intron 45.0%
!!! ATTTAATAGTATTTTAATTA+GGG - Chr1:74204890-74204909 MsG0180004159.01.T01:CDS 5.0%
!!! TATTTAATAGTATTTTAATT+AGG - Chr1:74204889-74204908 MsG0180004159.01.T01:CDS 5.0%
AAAGTGGGATGGCGTATAGC+AGG - Chr1:74205525-74205544 MsG0180004159.01.T01:intron 50.0%
AAGGTCACGAGTTCAAGTCC+TGG - Chr1:74206349-74206368 MsG0180004159.01.T01:intron 50.0%
AGGGCAAATCCGAACTTGTG+GGG - Chr1:74207376-74207395 MsG0180004159.01.T01:CDS 50.0%
AGGGGTAACCTTGGCGTAAT+TGG - Chr1:74206280-74206299 MsG0180004159.01.T01:intron 50.0%
CAAGCTGAGTACCCCTATGT+TGG + Chr1:74207190-74207209 None:intergenic 50.0%
CAGGGCAAATCCGAACTTGT+GGG - Chr1:74207375-74207394 MsG0180004159.01.T01:CDS 50.0%
CCCAAACCATGATGATCGAC+TGG - Chr1:74203988-74204007 MsG0180004159.01.T01:CDS 50.0%
CCGCTTGTAGGGAAATTACG+TGG - Chr1:74205868-74205887 MsG0180004159.01.T01:intron 50.0%
CCGGTGTATGCAAGAATTGG+AGG - Chr1:74206617-74206636 MsG0180004159.01.T01:intron 50.0%
CTACTTCAAGGTCCATGTCG+TGG - Chr1:74206703-74206722 MsG0180004159.01.T01:intron 50.0%
GCCAGTCGATCATCATGGTT+TGG + Chr1:74203992-74204011 None:intergenic 50.0%
GCGTACAATACGCCAAATGG+TGG - Chr1:74206405-74206424 MsG0180004159.01.T01:intron 50.0%
GCTGCGTACAATACGCCAAA+TGG - Chr1:74206402-74206421 MsG0180004159.01.T01:intron 50.0%
TAGTGGCCGACCCTAAAAGT+GGG - Chr1:74205510-74205529 MsG0180004159.01.T01:intron 50.0%
TATAGCAGCGTAGCAGACGT+TGG - Chr1:74204862-74204881 MsG0180004159.01.T01:CDS 50.0%
TCAGGGCAAATCCGAACTTG+TGG - Chr1:74207374-74207393 MsG0180004159.01.T01:CDS 50.0%
! CGCCGCAATGCCATGATTTT+TGG - Chr1:74204286-74204305 MsG0180004159.01.T01:intron 50.0%
! CGGTGGACATTAGTTTCCCA+AGG + Chr1:74204575-74204594 None:intergenic 50.0%
ACTGAAGCTCCCGCATATGC+AGG + Chr1:74206446-74206465 None:intergenic 55.0%
CAAGCGGCAAGAAACCGCTA+CGG + Chr1:74205855-74205874 None:intergenic 55.0%
CAAGGTCCATGTCGTGGCAA+GGG - Chr1:74206709-74206728 MsG0180004159.01.T01:intron 55.0%
CATGATCCCTTGCCACGACA+TGG + Chr1:74206781-74206800 None:intergenic 55.0%
CTGAAGCTCCCGCATATGCA+GGG + Chr1:74206445-74206464 None:intergenic 55.0%
GTAGTGGCCGACCCTAAAAG+TGG - Chr1:74205509-74205528 MsG0180004159.01.T01:intron 55.0%
TACCATGGGATGGCCAACCT+AGG - Chr1:74204824-74204843 MsG0180004159.01.T01:CDS 55.0%
TCAAGGTCCATGTCGTGGCA+AGG - Chr1:74206708-74206727 MsG0180004159.01.T01:intron 55.0%
! AGCGGTTTCTTGCCGCTTGT+AGG - Chr1:74205856-74205875 MsG0180004159.01.T01:intron 55.0%
! AGGGGAGGTGGTTGACTTTG+TGG - Chr1:74207128-74207147 MsG0180004159.01.T01:intron 55.0%
! AGGTGTCGTGGCAGCAGTAA+AGG - Chr1:74204114-74204133 MsG0180004159.01.T01:CDS 55.0%
! GCGGTTTCTTGCCGCTTGTA+GGG - Chr1:74205857-74205876 MsG0180004159.01.T01:intron 55.0%
! TACCTAGGTTGGCCATCCCA+TGG + Chr1:74204829-74204848 None:intergenic 55.0%
!!! CGCCATCCCACTTTTAGGGT+CGG + Chr1:74205519-74205538 None:intergenic 55.0%
ATGCGGGAGCTTCAGTGCAC+CGG - Chr1:74206450-74206469 MsG0180004159.01.T01:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + Chr1:74206433-74206452 None:intergenic 60.0%
CGTGATCCCTTGCCACGACA+TGG + Chr1:74206718-74206737 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - Chr1:74206433-74206452 MsG0180004159.01.T01:intron 60.0%
GCATATGCAGGGTCCGGGAA+GGG + Chr1:74206434-74206453 None:intergenic 60.0%
GGCCGACCCTAAAAGTGGGA+TGG - Chr1:74205514-74205533 MsG0180004159.01.T01:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - Chr1:74206434-74206453 MsG0180004159.01.T01:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - Chr1:74206418-74206437 MsG0180004159.01.T01:intron 60.0%
CGCATATGCAGGGTCCGGGA+AGG + Chr1:74206435-74206454 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + Chr1:74206420-74206439 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + Chr1:74206439-74206458 None:intergenic 65.0%
GCATCCCGGACAGTGCGTAG+TGG - Chr1:74205493-74205512 MsG0180004159.01.T01:intron 65.0%
GCTCCCGCATATGCAGGGTC+CGG + Chr1:74206440-74206459 None:intergenic 65.0%
GTCGGCCACTACGCACTGTC+CGG + Chr1:74205501-74205520 None:intergenic 65.0%
TCGGCCACTACGCACTGTCC+GGG + Chr1:74205500-74205519 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - Chr1:74206451-74206470 MsG0180004159.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 74203977 74207582 74203977 ID=MsG0180004159.01;Name=MsG0180004159.01
Chr1 mRNA 74203977 74207582 74203977 ID=MsG0180004159.01.T01;Parent=MsG0180004159.01;Name=MsG0180004159.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|392
Chr1 exon 74207327 74207582 74207327 ID=MsG0180004159.01.T01:exon:5539;Parent=MsG0180004159.01.T01
Chr1 exon 74204321 74205038 74204321 ID=MsG0180004159.01.T01:exon:5538;Parent=MsG0180004159.01.T01
Chr1 exon 74203977 74204181 74203977 ID=MsG0180004159.01.T01:exon:5537;Parent=MsG0180004159.01.T01
Chr1 CDS 74207327 74207582 74207327 ID=MsG0180004159.01.T01:cds;Parent=MsG0180004159.01.T01
Chr1 CDS 74204321 74205038 74204321 ID=MsG0180004159.01.T01:cds;Parent=MsG0180004159.01.T01
Chr1 CDS 74203977 74204181 74203977 ID=MsG0180004159.01.T01:cds;Parent=MsG0180004159.01.T01
Gene Sequence

>MsG0180004159.01.T01

ATGAAGGTCTCCCCAAACCATGATGATCGACTGGCATATCTTGCGACAGTCAAAGTTGCATTTCAACATAACATGATGAAGTATGATCAATTCTTAAATATTCTAATGAGTTTCAAGGATCAAATAATTGATATAAGAGGTGTCGTGGCAGCAGTAAAGGAGCTGTTTAAAGGGCATACAAATTTAATTTTGGGATTCAACACCTTCCTGCCAAAGGAATATGAAATCACACTTCCATTTCAACTTGAGATGAATGGAAAAAGATTGAAGGTAGAAGAGAATTGTGAACTTCCATCGGATGTGCTTGATATCATTTTCAAACCACTAGATTTTGACGATCTCTTTCAGATTGCCGGTGTATGCAAGAATTGGAGGGTTTTCCATAAAATTTATTGGAGAAATTTCTTGGAATCCTTCTTTGCATCCGAAGAACCATTACTACTTCAAGGTCCATGTCGTGGCAAGGGATCACGTTCCTTCTTTGCATCTGAAAAACCATTACTACTTCAAGGTCCATGTCGTGGCAAGGGATCATGTTCCTTTATTAGCATATCCAACCAAAAAGTTTATTGCTTGAAGATGATGGAATACTTCTTCAATCACTATATCTACGTTACATTTTCTAGCGGATATTTTATCATGGTGAGGGATGATGTATTTGTGCTTATCAACCCATTTACAAGAACAAAGAAGGAAATCGATACCCCTACCAGAATTAACGATTATAATTGTATTGATCGTGCCTTGCTTGCTTTAGACAAATGCTCAGAAGAATTTGTCTTGGTGATTTCAAGCCTAAGTCGTTTGCATGTCTATCAATCTCGAAATGGAGAATGGGTTTTTTATCCAACAATGGAAGATAAAGGGGAGGTGGTTGACTTTGTGGTTTTCCATAATATAATATATGTTGTCACTTTAAAGGCCAACATAGGGGTACTCAGCTTGAACTCTGCACTACCTAAGGCTCGTTATATGGCAAATCCGAACTTGTGGGGATATGAGAGCAACTCTGTGTATATCATCAATCAATTTTCTACAAGATGTAGTGTGTATTCATGGGATGATAAAAAGTTGCAAAAATGTATTACGGTTTCAACTCTTGATGGAACAAGTTCTCTCATGTTTGATTGGTGTATTAGACGTCTACGATATGAAATAGATTATTCTCTAGTTGAGTAG
Protein sequence

>MsG0180004159.01.T01

MKVSPNHDDRLAYLATVKVAFQHNMMKYDQFLNILMSFKDQIIDIRGVVAAVKELFKGHTNLILGFNTFLPKEYEITLPFQLEMNGKRLKVEENCELPSDVLDIIFKPLDFDDLFQIAGVCKNWRVFHKIYWRNFLESFFASEEPLLLQGPCRGKGSRSFFASEKPLLLQGPCRGKGSCSFISISNQKVYCLKMMEYFFNHYIYVTFSSGYFIMVRDDVFVLINPFTRTKKEIDTPTRINDYNCIDRALLALDKCSEEFVLVISSLSRLHVYQSRNGEWVFYPTMEDKGEVVDFVVFHNIIYVVTLKANIGVLSLNSALPKARYMANPNLWGYESNSVYIINQFSTRCSVYSWDDKKLQKCITVSTLDGTSSLMFDWCIRRLRYEIDYSLVE*