AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004703.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004703.01.T01 MTR_1g084980 93.897 721 38 3 1 715 1 721 0.0 1380
MsG0180004703.01.T01 MTR_1g084980 97.405 501 11 1 1 499 1 501 0.0 1001
MsG0180004703.01.T01 MTR_7g111320 46.685 739 296 19 1 704 2 677 0.0 550
MsG0180004703.01.T01 MTR_1g069155 49.333 150 69 3 395 541 254 399 2.79e-28 120
MsG0180004703.01.T01 MTR_7g099540 46.104 154 67 5 396 539 185 332 1.13e-24 108
MsG0180004703.01.T01 MTR_7g099540 45.000 160 66 6 396 539 185 338 8.74e-24 105
MsG0180004703.01.T01 MTR_3g449770 50.376 133 51 6 425 554 276 396 4.08e-22 100
MsG0180004703.01.T01 MTR_7g110810 40.252 159 84 4 407 558 152 306 2.67e-19 90.9
MsG0180004703.01.T01 MTR_5g017040 38.926 149 74 3 402 546 59 194 1.54e-12 70.1
MsG0180004703.01.T01 MTR_1g019240 53.846 65 27 1 454 518 79 140 5.10e-12 67.4
MsG0180004703.01.T01 MTR_7g039110 47.143 70 36 1 432 500 268 337 7.26e-12 67.8
MsG0180004703.01.T02 MTR_1g084980 93.897 721 38 3 1 715 1 721 0.0 1380
MsG0180004703.01.T02 MTR_1g084980 97.405 501 11 1 1 499 1 501 0.0 1001
MsG0180004703.01.T02 MTR_7g111320 46.685 739 296 19 1 704 2 677 0.0 550
MsG0180004703.01.T02 MTR_1g069155 49.333 150 69 3 395 541 254 399 2.79e-28 120
MsG0180004703.01.T02 MTR_7g099540 46.104 154 67 5 396 539 185 332 1.13e-24 108
MsG0180004703.01.T02 MTR_7g099540 45.000 160 66 6 396 539 185 338 8.74e-24 105
MsG0180004703.01.T02 MTR_3g449770 50.376 133 51 6 425 554 276 396 4.08e-22 100
MsG0180004703.01.T02 MTR_7g110810 40.252 159 84 4 407 558 152 306 2.67e-19 90.9
MsG0180004703.01.T02 MTR_5g017040 38.926 149 74 3 402 546 59 194 1.54e-12 70.1
MsG0180004703.01.T02 MTR_1g019240 53.846 65 27 1 454 518 79 140 5.10e-12 67.4
MsG0180004703.01.T02 MTR_7g039110 47.143 70 36 1 432 500 268 337 7.26e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004703.01.T01 AT1G09530 32.633 619 237 25 1 592 1 466 2.51e-54 195
MsG0180004703.01.T01 AT1G09530 32.633 619 237 25 1 592 1 466 2.51e-54 195
MsG0180004703.01.T01 AT1G09530 32.633 619 237 25 1 592 1 466 2.51e-54 195
MsG0180004703.01.T01 AT1G09530 32.633 619 237 25 1 592 1 466 2.51e-54 195
MsG0180004703.01.T01 AT1G09530 32.633 619 237 25 1 592 1 466 2.51e-54 195
MsG0180004703.01.T01 AT1G09530 32.633 619 237 25 1 592 1 466 2.51e-54 195
MsG0180004703.01.T01 AT2G46970 38.579 197 90 8 395 573 127 310 3.45e-20 94.0
MsG0180004703.01.T01 AT2G46970 38.579 197 90 8 395 573 158 341 3.87e-20 94.0
MsG0180004703.01.T01 AT2G46970 38.579 197 90 8 395 573 136 319 4.91e-20 93.6
MsG0180004703.01.T01 AT2G20180 38.983 177 84 6 399 569 153 311 5.40e-20 93.6
MsG0180004703.01.T01 AT2G20180 38.983 177 84 6 399 569 153 311 5.40e-20 93.6
MsG0180004703.01.T01 AT2G20180 38.983 177 84 6 399 569 153 311 5.40e-20 93.6
MsG0180004703.01.T01 AT2G20180 38.983 177 84 6 399 569 224 382 1.38e-19 93.2
MsG0180004703.01.T01 AT2G20180 38.983 177 84 6 399 569 224 382 1.38e-19 93.2
MsG0180004703.01.T01 AT2G20180 38.983 177 84 6 399 569 224 382 1.38e-19 93.2
MsG0180004703.01.T01 AT2G20180 38.983 177 84 6 399 569 224 382 1.38e-19 93.2
MsG0180004703.01.T01 AT4G28800 37.654 162 74 6 392 545 193 335 5.92e-17 84.7
MsG0180004703.01.T01 AT2G20180 46.602 103 42 3 399 498 224 316 2.15e-16 81.6
MsG0180004703.01.T01 AT4G28790 37.086 151 72 5 421 561 244 381 6.18e-16 81.3
MsG0180004703.01.T01 AT4G28800 35.849 159 75 6 392 545 205 341 2.26e-15 79.7
MsG0180004703.01.T01 AT4G00050 41.837 98 53 2 432 528 79 173 1.31e-14 75.5
MsG0180004703.01.T01 AT4G00050 41.837 98 53 2 432 528 181 275 3.24e-14 75.9
MsG0180004703.01.T01 AT4G00050 41.837 98 53 2 432 528 181 275 3.50e-14 75.5
MsG0180004703.01.T01 AT4G28815 44.156 77 39 1 456 532 64 136 9.14e-14 72.0
MsG0180004703.01.T01 AT4G28815 40.964 83 45 1 450 532 134 212 2.98e-13 71.6
MsG0180004703.01.T01 AT4G36930 43.860 114 55 3 432 538 161 272 5.81e-12 68.6
MsG0180004703.01.T01 AT3G62090 35.772 123 58 3 460 570 165 278 3.35e-11 65.9
MsG0180004703.01.T01 AT3G62090 35.772 123 58 3 460 570 182 295 4.68e-11 65.5
MsG0180004703.01.T02 AT1G09530 32.633 619 237 25 1 592 1 466 2.51e-54 195
MsG0180004703.01.T02 AT1G09530 32.633 619 237 25 1 592 1 466 2.51e-54 195
MsG0180004703.01.T02 AT1G09530 32.633 619 237 25 1 592 1 466 2.51e-54 195
MsG0180004703.01.T02 AT1G09530 32.633 619 237 25 1 592 1 466 2.51e-54 195
MsG0180004703.01.T02 AT1G09530 32.633 619 237 25 1 592 1 466 2.51e-54 195
MsG0180004703.01.T02 AT1G09530 32.633 619 237 25 1 592 1 466 2.51e-54 195
MsG0180004703.01.T02 AT2G46970 38.579 197 90 8 395 573 127 310 3.45e-20 94.0
MsG0180004703.01.T02 AT2G46970 38.579 197 90 8 395 573 158 341 3.87e-20 94.0
MsG0180004703.01.T02 AT2G46970 38.579 197 90 8 395 573 136 319 4.91e-20 93.6
MsG0180004703.01.T02 AT2G20180 38.983 177 84 6 399 569 153 311 5.40e-20 93.6
MsG0180004703.01.T02 AT2G20180 38.983 177 84 6 399 569 153 311 5.40e-20 93.6
MsG0180004703.01.T02 AT2G20180 38.983 177 84 6 399 569 153 311 5.40e-20 93.6
MsG0180004703.01.T02 AT2G20180 38.983 177 84 6 399 569 224 382 1.38e-19 93.2
MsG0180004703.01.T02 AT2G20180 38.983 177 84 6 399 569 224 382 1.38e-19 93.2
MsG0180004703.01.T02 AT2G20180 38.983 177 84 6 399 569 224 382 1.38e-19 93.2
MsG0180004703.01.T02 AT2G20180 38.983 177 84 6 399 569 224 382 1.38e-19 93.2
MsG0180004703.01.T02 AT4G28800 37.654 162 74 6 392 545 193 335 5.92e-17 84.7
MsG0180004703.01.T02 AT2G20180 46.602 103 42 3 399 498 224 316 2.15e-16 81.6
MsG0180004703.01.T02 AT4G28790 37.086 151 72 5 421 561 244 381 6.18e-16 81.3
MsG0180004703.01.T02 AT4G28800 35.849 159 75 6 392 545 205 341 2.26e-15 79.7
MsG0180004703.01.T02 AT4G00050 41.837 98 53 2 432 528 79 173 1.31e-14 75.5
MsG0180004703.01.T02 AT4G00050 41.837 98 53 2 432 528 181 275 3.24e-14 75.9
MsG0180004703.01.T02 AT4G00050 41.837 98 53 2 432 528 181 275 3.50e-14 75.5
MsG0180004703.01.T02 AT4G28815 44.156 77 39 1 456 532 64 136 9.14e-14 72.0
MsG0180004703.01.T02 AT4G28815 40.964 83 45 1 450 532 134 212 2.98e-13 71.6
MsG0180004703.01.T02 AT4G36930 43.860 114 55 3 432 538 161 272 5.81e-12 68.6
MsG0180004703.01.T02 AT3G62090 35.772 123 58 3 460 570 165 278 3.35e-11 65.9
MsG0180004703.01.T02 AT3G62090 35.772 123 58 3 460 570 182 295 4.68e-11 65.5

Find 30 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGCAATATTTAAGAAGTT+TGG 0.188590 1:-81556779 None:intergenic
CGCCGCCTTCTTCGTCCATT+TGG 0.199275 1:+81556749 MsG0180004703.01.T01:five_prime_UTR
CTTTGTCTTCAAACTTCATT+TGG 0.201765 1:+81557347 MsG0180004703.01.T01:five_prime_UTR
ATGCAATATTTAAGAAGTTT+GGG 0.315431 1:-81556778 None:intergenic
GCCGCCTTCTTCGTCCATTT+GGG 0.347498 1:+81556750 MsG0180004703.01.T01:five_prime_UTR
AATGCTAATACTAAGAGCTT+TGG 0.360151 1:+81557414 MsG0180004703.01.T01:five_prime_UTR
GATAACTTCTGAGTTGCATT+TGG 0.361157 1:+81556837 MsG0180004703.01.T01:five_prime_UTR
AGAATCAGTGTCACTGTATT+CGG 0.376615 1:+81556991 MsG0180004703.01.T01:five_prime_UTR
TCTTTATGAGTTATACCGTT+TGG 0.379797 1:+81557508 MsG0180004703.01.T01:CDS
CTTCATTTGGATTCCAAAGG+TGG 0.435654 1:+81557360 MsG0180004703.01.T01:five_prime_UTR
CTGATTCTCGGCTGAGATCA+AGG 0.445045 1:-81556976 None:intergenic
ATTGCTTCCAACATATTCTT+CGG 0.452650 1:-81557394 None:intergenic
AATACAGTGACACTGATTCT+CGG 0.465480 1:-81556988 None:intergenic
AAACTTCATTTGGATTCCAA+AGG 0.498356 1:+81557357 MsG0180004703.01.T01:five_prime_UTR
AGTTTATTGTGGCTTACGAC+AGG 0.502272 1:+81557316 MsG0180004703.01.T01:intron
ATCTCACTCATAGTTTATTG+TGG 0.506699 1:+81557305 MsG0180004703.01.T01:intron
AAACGGTATAACTCATAAAG+AGG 0.530629 1:-81557506 None:intergenic
GATAACACCGAAGAATATGT+TGG 0.549773 1:+81557387 MsG0180004703.01.T01:five_prime_UTR
AAGTTTGGGAATGACCCAAA+TGG 0.550042 1:-81556764 None:intergenic
GACTAACGGCGCAAGTGTAG+CGG 0.551051 1:+81557553 MsG0180004703.01.T01:CDS
CAAGCTTCTCTCTAGCCAAA+CGG 0.561344 1:-81557523 None:intergenic
AGATTATTCACACAACAAGA+AGG 0.563365 1:-81556873 None:intergenic
GTGTGCGTGTGTCACTGCAT+TGG 0.574052 1:+81556701 None:intergenic
GTCACTTACTTTACTTGACA+AGG 0.577238 1:+81557088 MsG0180004703.01.T01:five_prime_UTR
ATGACCCAAATGGACGAAGA+AGG 0.585238 1:-81556754 None:intergenic
GCACTAATCAGCATATAAGT+CGG 0.586456 1:-81557029 None:intergenic
TGTTAATGAACTTACGACGA+AGG 0.616840 1:-81557581 None:intergenic
ATCAGTGTCACTGTATTCGG+AGG 0.632909 1:+81556994 MsG0180004703.01.T01:five_prime_UTR
AAGCTTGATAATGAGACTAA+CGG 0.634639 1:+81557539 MsG0180004703.01.T01:CDS
ACCCAAATGGACGAAGAAGG+CGG 0.661772 1:-81556751 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATCTAAATTATAGA+GGG - Chr1:81558983-81559002 None:intergenic 10.0%
!! TAAAAATATCTAAATTATAG+AGG - Chr1:81558984-81559003 None:intergenic 10.0%
!! TAAGATTAAAAAATTAAGAT+TGG + Chr1:81557059-81557078 MsG0180004703.01.T01:five_prime_UTR 10.0%
!!! AAATAATAATTTATTTTCCT+TGG + Chr1:81561105-81561124 MsG0180004703.01.T01:three_prime_UTR 10.0%
!! AGAATAACAGAAAATTATTA+CGG - Chr1:81560475-81560494 None:intergenic 15.0%
!! CAAAAGATTTATGAAATTAT+TGG + Chr1:81559500-81559519 MsG0180004703.01.T01:intron 15.0%
!! TATTGGATAAAAAAAGTAAT+GGG + Chr1:81558096-81558115 MsG0180004703.01.T01:CDS 15.0%
!! TGAAAAACTGTATAAAATTA+TGG + Chr1:81559386-81559405 MsG0180004703.01.T01:intron 15.0%
!!! ACTTAATTCCTTATTTATTT+CGG + Chr1:81559695-81559714 MsG0180004703.01.T01:intron 15.0%
!!! ATAATTTTATACAGTTTTTC+AGG - Chr1:81559387-81559406 None:intergenic 15.0%
!! AATGCAATATTTAAGAAGTT+TGG - Chr1:81556782-81556801 None:intergenic 20.0%
!! ATCATAATTTATGTATACAG+AGG + Chr1:81559258-81559277 MsG0180004703.01.T01:intron 20.0%
!! ATGATGTTAAGATATATAAG+TGG - Chr1:81561011-81561030 None:intergenic 20.0%
!! ATGCAATATTTAAGAAGTTT+GGG - Chr1:81556781-81556800 None:intergenic 20.0%
!! ATTATTAACTTACTTCACTA+TGG - Chr1:81558958-81558977 None:intergenic 20.0%
!! CTATTGGATAAAAAAAGTAA+TGG + Chr1:81558095-81558114 MsG0180004703.01.T01:CDS 20.0%
!! TGTTGACAAATATAGAATAT+TGG + Chr1:81559423-81559442 MsG0180004703.01.T01:intron 20.0%
!!! ACTGCTAACATTATTATTTT+CGG - Chr1:81558306-81558325 None:intergenic 20.0%
!!! AGCTTATTTTATTTCCATTT+TGG + Chr1:81559229-81559248 MsG0180004703.01.T01:intron 20.0%
!!! TTTCTTAGTTTTGTTTGTTT+TGG + Chr1:81557686-81557705 MsG0180004703.01.T01:intron 20.0%
! AAACTAAAATATTAATGCCG+AGG - Chr1:81559826-81559845 None:intergenic 25.0%
! AAACTAACCTTATTGCAATT+AGG - Chr1:81559332-81559351 None:intergenic 25.0%
! AACTAAAATATTAATGCCGA+GGG - Chr1:81559825-81559844 None:intergenic 25.0%
! AATCACAAATTTATATTGCC+CGG - Chr1:81560629-81560648 None:intergenic 25.0%
! AGTAATAACAATCCAAAGAT+AGG + Chr1:81557891-81557910 MsG0180004703.01.T01:CDS 25.0%
! ATGGGAAAAATTCATTACAT+TGG - Chr1:81558438-81558457 None:intergenic 25.0%
! CAAGAAAACACTTTAATTGA+AGG + Chr1:81559040-81559059 MsG0180004703.01.T01:intron 25.0%
! GAAAATAATAATGTTAGCAG+TGG + Chr1:81558305-81558324 MsG0180004703.01.T01:CDS 25.0%
! GAATGATATTTACTTGAACT+TGG - Chr1:81559801-81559820 None:intergenic 25.0%
! GTTATAGGAGTTAAGAATAA+AGG + Chr1:81558545-81558564 MsG0180004703.01.T01:CDS 25.0%
! TAATGGGAATCAGATATTTA+GGG + Chr1:81558112-81558131 MsG0180004703.01.T01:CDS 25.0%
! TGTTTGATCATGAAATGAAA+TGG + Chr1:81557641-81557660 MsG0180004703.01.T01:intron 25.0%
! TTGAATACACTTCATGAATA+CGG - Chr1:81559574-81559593 None:intergenic 25.0%
!! TCATTGATAAAGACTCTTTT+GGG + Chr1:81557188-81557207 MsG0180004703.01.T01:intron 25.0%
!! TTCATTGATAAAGACTCTTT+TGG + Chr1:81557187-81557206 MsG0180004703.01.T01:intron 25.0%
!!! CTTCAATTAAAGTGTTTTCT+TGG - Chr1:81559042-81559061 None:intergenic 25.0%
!!! TTTTTTTGAACAAGCCAAAA+TGG - Chr1:81559623-81559642 None:intergenic 25.0%
AAAAATGATAACTGGGTCAT+TGG + Chr1:81556938-81556957 MsG0180004703.01.T01:five_prime_UTR 30.0%
AAACGGTATAACTCATAAAG+AGG - Chr1:81557509-81557528 None:intergenic 30.0%
AAACTTCATTTGGATTCCAA+AGG + Chr1:81557357-81557376 MsG0180004703.01.T01:five_prime_UTR 30.0%
AAATATCCTCTTCAGTAATC+TGG - Chr1:81560880-81560899 None:intergenic 30.0%
AACATGACACAAATAACAGA+TGG - Chr1:81559180-81559199 None:intergenic 30.0%
AAGTGCATAATCTATCTGAA+AGG + Chr1:81559144-81559163 MsG0180004703.01.T01:CDS 30.0%
AATCCAAAGATAGGAAAGTT+TGG + Chr1:81557900-81557919 MsG0180004703.01.T01:CDS 30.0%
AATGCTAATACTAAGAGCTT+TGG + Chr1:81557414-81557433 MsG0180004703.01.T01:five_prime_UTR 30.0%
ACTAAAATATTAATGCCGAG+GGG - Chr1:81559824-81559843 None:intergenic 30.0%
ACTCATACCTAATTGCAATA+AGG + Chr1:81559322-81559341 MsG0180004703.01.T01:CDS 30.0%
ACTTTAATTGAAGGATGTTG+AGG + Chr1:81559049-81559068 MsG0180004703.01.T01:intron 30.0%
AGATTATTCACACAACAAGA+AGG - Chr1:81556876-81556895 None:intergenic 30.0%
AGCTCAAAAAAATCATTCTC+AGG - Chr1:81557732-81557751 None:intergenic 30.0%
AGTGCATAATCTATCTGAAA+GGG + Chr1:81559145-81559164 MsG0180004703.01.T01:CDS 30.0%
ATCCAAATCGAGATTTGAAA+CGG + Chr1:81558903-81558922 MsG0180004703.01.T01:CDS 30.0%
ATCTCACTCATAGTTTATTG+TGG + Chr1:81557305-81557324 MsG0180004703.01.T01:intron 30.0%
ATCTGTAACTGTTAGATCTA+GGG + Chr1:81558268-81558287 MsG0180004703.01.T01:CDS 30.0%
ATGGAAATAAAATAAGCTCG+AGG - Chr1:81559227-81559246 None:intergenic 30.0%
ATTATGATCATCAGCCAAAA+TGG - Chr1:81559246-81559265 None:intergenic 30.0%
ATTGAATGAGATTCCAATGT+CGG + Chr1:81557938-81557957 MsG0180004703.01.T01:CDS 30.0%
ATTGCTTCCAACATATTCTT+CGG - Chr1:81557397-81557416 None:intergenic 30.0%
CAATAGAGTAAAACTATTCG+AGG - Chr1:81558081-81558100 None:intergenic 30.0%
CACTATGAAAGATCTGAATA+AGG - Chr1:81561069-81561088 None:intergenic 30.0%
CAGAAATGCCGAAATAAATA+AGG - Chr1:81559706-81559725 None:intergenic 30.0%
CCAGTTGAAAAATGATAACT+GGG + Chr1:81556931-81556950 MsG0180004703.01.T01:five_prime_UTR 30.0%
CTTTGTCTTCAAACTTCATT+TGG + Chr1:81557347-81557366 MsG0180004703.01.T01:five_prime_UTR 30.0%
GATCTTTCATAGTGATTCTT+TGG + Chr1:81561075-81561094 MsG0180004703.01.T01:three_prime_UTR 30.0%
GGGCAATATAAATTTGTGAT+TGG + Chr1:81560628-81560647 MsG0180004703.01.T01:intron 30.0%
TACTTTGACATAAAGCATAG+AGG + Chr1:81560710-81560729 MsG0180004703.01.T01:intron 30.0%
TATTGTGAACATGTATCAGT+AGG + Chr1:81560655-81560674 MsG0180004703.01.T01:intron 30.0%
TCCAGTTGAAAAATGATAAC+TGG + Chr1:81556930-81556949 MsG0180004703.01.T01:five_prime_UTR 30.0%
TCTTTATGAGTTATACCGTT+TGG + Chr1:81557508-81557527 MsG0180004703.01.T01:CDS 30.0%
TGAATCATTGGAAATCTAGA+CGG - Chr1:81560064-81560083 None:intergenic 30.0%
TGATTTCTTTCATGAACTCA+CGG + Chr1:81558040-81558059 MsG0180004703.01.T01:CDS 30.0%
TGGAAATAAAATAAGCTCGA+GGG - Chr1:81559226-81559245 None:intergenic 30.0%
TGGATTTAAACAGTCAACTT+TGG + Chr1:81560553-81560572 MsG0180004703.01.T01:intron 30.0%
! AAAGATGAGAAACGACATTT+TGG - Chr1:81560846-81560865 None:intergenic 30.0%
! AAATGTCAGAAGTTCCATTT+TGG + Chr1:81559606-81559625 MsG0180004703.01.T01:intron 30.0%
! AGTGTTTTCTTGGTTTATAG+AGG - Chr1:81559032-81559051 None:intergenic 30.0%
! CATTGATAAAGACTCTTTTG+GGG + Chr1:81557189-81557208 MsG0180004703.01.T01:intron 30.0%
! CTAGAAAATTGCACAGATTT+TGG + Chr1:81560955-81560974 MsG0180004703.01.T01:three_prime_UTR 30.0%
! GTAATGGGAATCAGATATTT+AGG + Chr1:81558111-81558130 MsG0180004703.01.T01:CDS 30.0%
! GTGTTTTCTTGGTTTATAGA+GGG - Chr1:81559031-81559050 None:intergenic 30.0%
! TGAATTTTTCCCATTTTGCA+AGG + Chr1:81558444-81558463 MsG0180004703.01.T01:CDS 30.0%
!! AAGCTTGATAATGAGACTAA+CGG + Chr1:81557539-81557558 MsG0180004703.01.T01:CDS 30.0%
!! ACTTATTGTTTGAGTTGTAC+CGG + Chr1:81560754-81560773 MsG0180004703.01.T01:intron 30.0%
!! CTCGAATAGTTTTACTCTAT+TGG + Chr1:81558079-81558098 MsG0180004703.01.T01:CDS 30.0%
!! TGGATTTGATTTGAATGTGT+AGG + Chr1:81557706-81557725 MsG0180004703.01.T01:intron 30.0%
!!! AGCTTTGGTTTTTTGATTTG+TGG + Chr1:81557429-81557448 MsG0180004703.01.T01:five_prime_UTR 30.0%
!!! ATGATTTTTTTGAGCTGGTT+TGG + Chr1:81557736-81557755 MsG0180004703.01.T01:CDS 30.0%
!!! TCTGTGCAATTTTCTAGTTT+CGG - Chr1:81560952-81560971 None:intergenic 30.0%
!!! TGAGAATGATTTTTTTGAGC+TGG + Chr1:81557731-81557750 MsG0180004703.01.T01:CDS 30.0%
!!! TGATTTTTTTGAGCTGGTTT+GGG + Chr1:81557737-81557756 MsG0180004703.01.T01:CDS 30.0%
AAGTAAATATCATTCCCCCT+CGG + Chr1:81559806-81559825 MsG0180004703.01.T01:intron 35.0%
AAGTAGATGAAATGATGCCT+TGG + Chr1:81557973-81557992 MsG0180004703.01.T01:CDS 35.0%
ACACTAGTATAACAGAGAAG+CGG - Chr1:81560517-81560536 None:intergenic 35.0%
AGAGCTAATCTTCAGAACAT+AGG + Chr1:81558482-81558501 MsG0180004703.01.T01:CDS 35.0%
AGCTAAGTTTGAATCCATAG+TGG - Chr1:81559452-81559471 None:intergenic 35.0%
ATATGATTTCCTTGCATCTG+AGG - Chr1:81560091-81560110 None:intergenic 35.0%
ATTGTCACCAAGAACTTGAA+TGG - Chr1:81558786-81558805 None:intergenic 35.0%
CAAATTAAGCAAAACACTGC+TGG + Chr1:81560358-81560377 MsG0180004703.01.T01:CDS 35.0%
CATCTGTAACTGTTAGATCT+AGG + Chr1:81558267-81558286 MsG0180004703.01.T01:CDS 35.0%
CTAAAATATTAATGCCGAGG+GGG - Chr1:81559823-81559842 None:intergenic 35.0%
CTAAGAAGAGCAAAATCAGA+AGG - Chr1:81559359-81559378 None:intergenic 35.0%
GAACCCTTAGAAACATTCAT+CGG - Chr1:81558161-81558180 None:intergenic 35.0%
GAATCAGTGGGAGTTAAAAA+GGG + Chr1:81559074-81559093 MsG0180004703.01.T01:CDS 35.0%
GATAACACCGAAGAATATGT+TGG + Chr1:81557387-81557406 MsG0180004703.01.T01:five_prime_UTR 35.0%
GATAACTTCTGAGTTGCATT+TGG + Chr1:81556837-81556856 MsG0180004703.01.T01:five_prime_UTR 35.0%
GCACTAATCAGCATATAAGT+CGG - Chr1:81557032-81557051 None:intergenic 35.0%
GTCACTTACTTTACTTGACA+AGG + Chr1:81557088-81557107 MsG0180004703.01.T01:five_prime_UTR 35.0%
GTTGACTGTTTAAATCCAAC+AGG - Chr1:81560551-81560570 None:intergenic 35.0%
TCACCAAACTTTCCTATCTT+TGG - Chr1:81557906-81557925 None:intergenic 35.0%
TCAGCAAGATCAGATGTTAT+AGG + Chr1:81558530-81558549 MsG0180004703.01.T01:CDS 35.0%
TCCATTGAATAATCCAACCA+AGG - Chr1:81557993-81558012 None:intergenic 35.0%
TGAATCAGTGGGAGTTAAAA+AGG + Chr1:81559073-81559092 MsG0180004703.01.T01:CDS 35.0%
TGGTTGGATTATTCAATGGA+TGG + Chr1:81557993-81558012 MsG0180004703.01.T01:CDS 35.0%
TGTTAATGAACTTACGACGA+AGG - Chr1:81557584-81557603 None:intergenic 35.0%
TGTTTAGTAGCTACAGCATT+TGG - Chr1:81558716-81558735 None:intergenic 35.0%
TTACCTGTCAAAATAGCCAT+GGG + Chr1:81560915-81560934 MsG0180004703.01.T01:three_prime_UTR 35.0%
TTCAAACCAGATTACTGAAG+AGG + Chr1:81560871-81560890 MsG0180004703.01.T01:three_prime_UTR 35.0%
TTCCGTTTCAAATCTCGATT+TGG - Chr1:81558908-81558927 None:intergenic 35.0%
TTTACCTGTCAAAATAGCCA+TGG + Chr1:81560914-81560933 MsG0180004703.01.T01:three_prime_UTR 35.0%
! AAGTTTGGTGATTTAGACTC+TGG + Chr1:81557915-81557934 MsG0180004703.01.T01:CDS 35.0%
! AGAACCGATGAATGTTTCTA+AGG + Chr1:81558154-81558173 MsG0180004703.01.T01:CDS 35.0%
! AGAATCAGTGTCACTGTATT+CGG + Chr1:81556991-81557010 MsG0180004703.01.T01:five_prime_UTR 35.0%
! ATCTGAGGTACTTGAATCAT+TGG - Chr1:81560076-81560095 None:intergenic 35.0%
! ATTCAAGTTCTTGGTGACAA+TGG + Chr1:81558785-81558804 MsG0180004703.01.T01:CDS 35.0%
! GAACCGATGAATGTTTCTAA+GGG + Chr1:81558155-81558174 MsG0180004703.01.T01:CDS 35.0%
! GCATTTGGTTCAAGCAATTT+CGG - Chr1:81558701-81558720 None:intergenic 35.0%
! TAGAATATTGGTTGCCACTA+TGG + Chr1:81559435-81559454 MsG0180004703.01.T01:intron 35.0%
! TTAGGTATGGGTTATGGAAT+GGG + Chr1:81560016-81560035 MsG0180004703.01.T01:CDS 35.0%
!! AATACAGTGACACTGATTCT+CGG - Chr1:81556991-81557010 None:intergenic 35.0%
!! CCCAGTTATCATTTTTCAAC+TGG - Chr1:81556934-81556953 None:intergenic 35.0%
!! GTTTGACATTGATTCGATGA+TGG - Chr1:81558245-81558264 None:intergenic 35.0%
!! TGCACAGATTTTGGTATCTT+GGG + Chr1:81560964-81560983 MsG0180004703.01.T01:three_prime_UTR 35.0%
!! TTAATTTGTGAGTCCACATC+TGG - Chr1:81560346-81560365 None:intergenic 35.0%
!! TTGCACAGATTTTGGTATCT+TGG + Chr1:81560963-81560982 MsG0180004703.01.T01:three_prime_UTR 35.0%
!!! GATTTGTGGTTTTTTAGCTG+AGG + Chr1:81557443-81557462 MsG0180004703.01.T01:five_prime_UTR 35.0%
!!! TGGTTTTTTAGCTGAGGTTT+TGG + Chr1:81557449-81557468 MsG0180004703.01.T01:five_prime_UTR 35.0%
AAACCCTTGAGTATTCGATC+TGG - Chr1:81560158-81560177 None:intergenic 40.0%
AAGCAAGATCCTATAATGCC+TGG + Chr1:81558404-81558423 MsG0180004703.01.T01:CDS 40.0%
AAGTTTGGGAATGACCCAAA+TGG - Chr1:81556767-81556786 None:intergenic 40.0%
ACATGTTGAAGCTGTGAATC+CGG + Chr1:81560291-81560310 MsG0180004703.01.T01:CDS 40.0%
AGAGTAAAACTATTCGAGGC+AGG - Chr1:81558077-81558096 None:intergenic 40.0%
AGATCGAATACTCAAGGGTT+TGG + Chr1:81560157-81560176 MsG0180004703.01.T01:CDS 40.0%
AGATGAAATGATGCCTTGGT+TGG + Chr1:81557977-81557996 MsG0180004703.01.T01:CDS 40.0%
AGTTTATTGTGGCTTACGAC+AGG + Chr1:81557316-81557335 MsG0180004703.01.T01:intron 40.0%
ATGCATATGGGGTTAGGTAT+GGG + Chr1:81560004-81560023 MsG0180004703.01.T01:CDS 40.0%
ATGCGAGTAATATCCCCATA+AGG - Chr1:81558344-81558363 None:intergenic 40.0%
ATTACATTGGAACCATTGCC+AGG - Chr1:81558425-81558444 None:intergenic 40.0%
ATTCAAGTACCTCAGATGCA+AGG + Chr1:81560079-81560098 MsG0180004703.01.T01:CDS 40.0%
ATTCCATTCTCTTTGCAAGC+AGG - Chr1:81558746-81558765 None:intergenic 40.0%
ATTTCATCTACTTCGCGAGA+TGG - Chr1:81557966-81557985 None:intergenic 40.0%
CAAAGGTTTCAAATCAGCCT+TGG - Chr1:81558675-81558694 None:intergenic 40.0%
CTTACGCAGATGATGTCAAT+GGG + Chr1:81559887-81559906 MsG0180004703.01.T01:CDS 40.0%
CTTCATTTGGATTCCAAAGG+TGG + Chr1:81557360-81557379 MsG0180004703.01.T01:five_prime_UTR 40.0%
GAAAATTGATCACAGAGACC+TGG - Chr1:81560431-81560450 None:intergenic 40.0%
GAGTATCAATCATAACCTGC+CGG - Chr1:81560776-81560795 None:intergenic 40.0%
GATGTTGAGGATGAATCAGT+GGG + Chr1:81559062-81559081 MsG0180004703.01.T01:CDS 40.0%
GCCTTGGTTGGATTATTCAA+TGG + Chr1:81557989-81558008 MsG0180004703.01.T01:CDS 40.0%
GGATTAACAAGAGCTGAATC+AGG - Chr1:81558596-81558615 None:intergenic 40.0%
GTAGAAAGAGTCCATCTTGT+AGG + Chr1:81557799-81557818 MsG0180004703.01.T01:CDS 40.0%
TAAAACTATTCGAGGCAGGA+AGG - Chr1:81558073-81558092 None:intergenic 40.0%
TAAAGCTTCTATGCTGGATG+AGG + Chr1:81559747-81559766 MsG0180004703.01.T01:intron 40.0%
TAAGCTAGAAAAATCGCTCG+AGG - Chr1:81558375-81558394 None:intergenic 40.0%
TAATGTTAGCAGTGGTAACC+AGG + Chr1:81558313-81558332 MsG0180004703.01.T01:CDS 40.0%
TACCTCTACTTGATTGACCT+TGG - Chr1:81557782-81557801 None:intergenic 40.0%
TCACCAAGAACTTGAATGGA+AGG - Chr1:81558782-81558801 None:intergenic 40.0%
TCAGCTCTTGTTAATCCAAG+CGG + Chr1:81558599-81558618 MsG0180004703.01.T01:CDS 40.0%
TCGGCATTTCTGACTTCATA+CGG + Chr1:81559714-81559733 MsG0180004703.01.T01:intron 40.0%
TCTATCTGAAAGGGTGAGTA+AGG + Chr1:81559154-81559173 MsG0180004703.01.T01:intron 40.0%
TCTTACGCAGATGATGTCAA+TGG + Chr1:81559886-81559905 MsG0180004703.01.T01:CDS 40.0%
TGACATCATCTGCGTAAGAT+AGG - Chr1:81559885-81559904 None:intergenic 40.0%
TTAACAAGAGCTGAATCAGG+AGG - Chr1:81558593-81558612 None:intergenic 40.0%
TTACCATCTCATAGTCCTAG+AGG + Chr1:81557840-81557859 MsG0180004703.01.T01:CDS 40.0%
TTCGGAAACTAGAATTCCCA+TGG - Chr1:81560934-81560953 None:intergenic 40.0%
TTTCTGACTTCATACGGACT+AGG + Chr1:81559720-81559739 MsG0180004703.01.T01:intron 40.0%
! CAACCTTCCATTCAAGTTCT+TGG + Chr1:81558776-81558795 MsG0180004703.01.T01:CDS 40.0%
! CAGTCAACTTTGGTGCATAA+TGG + Chr1:81560563-81560582 MsG0180004703.01.T01:intron 40.0%
! GTTAGGTATGGGTTATGGAA+TGG + Chr1:81560015-81560034 MsG0180004703.01.T01:CDS 40.0%
! TCAACTTTGGTGCATAATGG+TGG + Chr1:81560566-81560585 MsG0180004703.01.T01:CDS 40.0%
! TTGATACTCTGCATTGATCG+TGG + Chr1:81560787-81560806 MsG0180004703.01.T01:three_prime_UTR 40.0%
!! GCACAGATTTTGGTATCTTG+GGG + Chr1:81560965-81560984 MsG0180004703.01.T01:three_prime_UTR 40.0%
!! GGTGTTATCTTTTCCACCTT+TGG - Chr1:81557376-81557395 None:intergenic 40.0%
!! TGACATTGATTCGATGATGG+CGG - Chr1:81558242-81558261 None:intergenic 40.0%
!!! ATTCCCATGGCTATTTTGAC+AGG - Chr1:81560921-81560940 None:intergenic 40.0%
AAAAGATCGAAGGCCAGATG+TGG + Chr1:81560330-81560349 MsG0180004703.01.T01:CDS 45.0%
AAGCCTGCTTGCAAAGAGAA+TGG + Chr1:81558740-81558759 MsG0180004703.01.T01:CDS 45.0%
ACCTTATGACAGCGCATTTC+CGG - Chr1:81558641-81558660 None:intergenic 45.0%
ACGGAAAAGTAGAGACACTG+AGG + Chr1:81558922-81558941 MsG0180004703.01.T01:CDS 45.0%
ACGTCTTTATCTCGACCTCT+AGG - Chr1:81557858-81557877 None:intergenic 45.0%
AGAGGTCGAGATAAAGACGT+AGG + Chr1:81557858-81557877 MsG0180004703.01.T01:CDS 45.0%
AGCCAAGGTCAATCAAGTAG+AGG + Chr1:81557777-81557796 MsG0180004703.01.T01:CDS 45.0%
AGCTCGAGGGAAAATATGTG+TGG - Chr1:81559213-81559232 None:intergenic 45.0%
AGGGATAAACAGACCTGGTT+AGG - Chr1:81560406-81560425 None:intergenic 45.0%
AGGTCTGTTTATCCCTAACC+AGG + Chr1:81560410-81560429 MsG0180004703.01.T01:intron 45.0%
AGTGGGAGTTAAAAAGGGAG+CGG + Chr1:81559079-81559098 MsG0180004703.01.T01:CDS 45.0%
AGTGGTCAGATTTCAAGCCA+AGG + Chr1:81557762-81557781 MsG0180004703.01.T01:CDS 45.0%
ATAAGAGGCCCTCCTGAAAA+AGG - Chr1:81560232-81560251 None:intergenic 45.0%
ATGACCCAAATGGACGAAGA+AGG - Chr1:81556757-81556776 None:intergenic 45.0%
ATGGCCAGATCGAATACTCA+AGG + Chr1:81560151-81560170 MsG0180004703.01.T01:CDS 45.0%
ATGGGAATGCCTGACATGAA+CGG + Chr1:81560034-81560053 MsG0180004703.01.T01:CDS 45.0%
CAAGCTTCTCTCTAGCCAAA+CGG - Chr1:81557526-81557545 None:intergenic 45.0%
CAGAACATAGGCTTGAAGTC+TGG + Chr1:81558494-81558513 MsG0180004703.01.T01:CDS 45.0%
CATGCATATGGGGTTAGGTA+TGG + Chr1:81560003-81560022 MsG0180004703.01.T01:CDS 45.0%
CCAGCAGGTAACATCATTTG+AGG - Chr1:81559929-81559948 None:intergenic 45.0%
CCTCAAATGATGTTACCTGC+TGG + Chr1:81559926-81559945 MsG0180004703.01.T01:CDS 45.0%
GAAAAATCGCTCGAGGAAGA+TGG - Chr1:81558368-81558387 None:intergenic 45.0%
GAACCATTGCCAGGCATTAT+AGG - Chr1:81558416-81558435 None:intergenic 45.0%
GATCCTATAATGCCTGGCAA+TGG + Chr1:81558410-81558429 MsG0180004703.01.T01:CDS 45.0%
GATGCCCATCTGTGAAAATG+CGG - Chr1:81559981-81560000 None:intergenic 45.0%
GATGGCAAACTCCTACAAGA+TGG - Chr1:81557813-81557832 None:intergenic 45.0%
GATTATGCACTTCAGCAGCA+CGG - Chr1:81559136-81559155 None:intergenic 45.0%
GCAAGACATAAAGCTAGTGC+CGG + Chr1:81558206-81558225 MsG0180004703.01.T01:CDS 45.0%
GCTCGAGGGAAAATATGTGT+GGG - Chr1:81559212-81559231 None:intergenic 45.0%
GGATGTTGAGGATGAATCAG+TGG + Chr1:81559061-81559080 MsG0180004703.01.T01:intron 45.0%
GGCTCTTTGCAACACGAATA+TGG + Chr1:81558014-81558033 MsG0180004703.01.T01:CDS 45.0%
GGGATAAACAGACCTGGTTA+GGG - Chr1:81560405-81560424 None:intergenic 45.0%
GGTGGATAAAGCTTCTATGC+TGG + Chr1:81559741-81559760 MsG0180004703.01.T01:intron 45.0%
GGTTTCAAATCAGCCTTGGA+TGG - Chr1:81558671-81558690 None:intergenic 45.0%
GTGTGTGTGAACTAACCTGT+TGG + Chr1:81560533-81560552 MsG0180004703.01.T01:intron 45.0%
TAAGGGTTCTTCAGCTGAAC+AGG + Chr1:81558172-81558191 MsG0180004703.01.T01:CDS 45.0%
TACTCAAGGGTTTGGACTTC+CGG + Chr1:81560165-81560184 MsG0180004703.01.T01:CDS 45.0%
TCAAGCAATTTCGGCTGCAA+AGG - Chr1:81558692-81558711 None:intergenic 45.0%
TCGTGGCTAGTAGAAGAATC+AGG + Chr1:81560804-81560823 MsG0180004703.01.T01:three_prime_UTR 45.0%
TCTTATGAACTCATCCGCTC+CGG + Chr1:81560246-81560265 MsG0180004703.01.T01:CDS 45.0%
TCTTCTGTTTGCTCTGGCAA+TGG + Chr1:81558860-81558879 MsG0180004703.01.T01:CDS 45.0%
TGACAGTGAAGCTGCTAATC+CGG + Chr1:81560607-81560626 MsG0180004703.01.T01:CDS 45.0%
TGAGATGGTAAGCAGTGAGA+TGG - Chr1:81557831-81557850 None:intergenic 45.0%
TGATCACAGAGACCTGGTTA+GGG - Chr1:81560425-81560444 None:intergenic 45.0%
TGGCCAGATCGAATACTCAA+GGG + Chr1:81560152-81560171 MsG0180004703.01.T01:CDS 45.0%
TGGTTAGGGATAAACAGACC+TGG - Chr1:81560411-81560430 None:intergenic 45.0%
TTGATCACAGAGACCTGGTT+AGG - Chr1:81560426-81560445 None:intergenic 45.0%
! ATCAGTGTCACTGTATTCGG+AGG + Chr1:81556994-81557013 MsG0180004703.01.T01:five_prime_UTR 45.0%
! ATGGCCGCATTTTCACAGAT+GGG + Chr1:81559974-81559993 MsG0180004703.01.T01:CDS 45.0%
! ATGGGGTTAGGTATGGGTTA+TGG + Chr1:81560010-81560029 MsG0180004703.01.T01:CDS 45.0%
! GCATTTTCACAGATGGGCAT+CGG + Chr1:81559980-81559999 MsG0180004703.01.T01:CDS 45.0%
! TTAGCTCTCACAATAGCTGC+AGG - Chr1:81558470-81558489 None:intergenic 45.0%
!! ATTGTTTGAGTTGTACCGGC+AGG + Chr1:81560758-81560777 MsG0180004703.01.T01:intron 45.0%
!! TGATGGCGGATATAACTGAC+CGG - Chr1:81558228-81558247 None:intergenic 45.0%
!!! CGGCATTTCCTTTTTCAGGA+GGG + Chr1:81560221-81560240 MsG0180004703.01.T01:CDS 45.0%
AAAGGAAATGCCGCAGCATG+CGG - Chr1:81560214-81560233 None:intergenic 50.0%
AACAGACCTGGTTAGGGATC+TGG - Chr1:81560399-81560418 None:intergenic 50.0%
ACCCAAATGGACGAAGAAGG+CGG - Chr1:81556754-81556773 None:intergenic 50.0%
ACCCTCTGCTATGCATGGAA+TGG + Chr1:81560132-81560151 MsG0180004703.01.T01:CDS 50.0%
ACCGGAAATGCGCTGTCATA+AGG + Chr1:81558637-81558656 MsG0180004703.01.T01:CDS 50.0%
ACTCAAGGGTTTGGACTTCC+GGG + Chr1:81560166-81560185 MsG0180004703.01.T01:CDS 50.0%
AGCTGCAGGCCTTGCAAAAT+GGG - Chr1:81558456-81558475 None:intergenic 50.0%
ATCGGCATGCATATGGGGTT+AGG + Chr1:81559998-81560017 MsG0180004703.01.T01:CDS 50.0%
CACAGCTGCTGAAAAAGGCA+TGG + Chr1:81558820-81558839 MsG0180004703.01.T01:CDS 50.0%
CACAGCTTCAACATGTCCTG+TGG - Chr1:81560287-81560306 None:intergenic 50.0%
CAGATGATGTCAATGGGAGC+TGG + Chr1:81559893-81559912 MsG0180004703.01.T01:CDS 50.0%
CGAGATAAAGACGTAGGAGG+AGG + Chr1:81557864-81557883 MsG0180004703.01.T01:CDS 50.0%
CGGTGAGTGTTCAAAGGAAC+CGG + Chr1:81558619-81558638 MsG0180004703.01.T01:CDS 50.0%
CGTGTGGCTCAAAAGATCGA+AGG + Chr1:81560320-81560339 MsG0180004703.01.T01:CDS 50.0%
CTGATTCTCGGCTGAGATCA+AGG - Chr1:81556979-81556998 None:intergenic 50.0%
CTTATGAACTCATCCGCTCC+GGG + Chr1:81560247-81560266 MsG0180004703.01.T01:CDS 50.0%
GACAGTGAAGCTGCTAATCC+GGG + Chr1:81560608-81560627 MsG0180004703.01.T01:CDS 50.0%
GCCAGAGCAAACAGAAGAAG+AGG - Chr1:81558858-81558877 None:intergenic 50.0%
GCCATTCCATGCATAGCAGA+GGG - Chr1:81560136-81560155 None:intergenic 50.0%
GCCTCTTCTTCTGTTTGCTC+TGG + Chr1:81558854-81558873 MsG0180004703.01.T01:CDS 50.0%
GGAAATGCGCTGTCATAAGG+TGG + Chr1:81558640-81558659 MsG0180004703.01.T01:CDS 50.0%
GGACACACAGCTGCTGAAAA+AGG + Chr1:81558815-81558834 MsG0180004703.01.T01:CDS 50.0%
GGAGCGGATGAGTTCATAAG+AGG - Chr1:81560247-81560266 None:intergenic 50.0%
GGTCGAGATAAAGACGTAGG+AGG + Chr1:81557861-81557880 MsG0180004703.01.T01:CDS 50.0%
GTAACCAGGACGTGCCTTAT+GGG + Chr1:81558327-81558346 MsG0180004703.01.T01:CDS 50.0%
GTATACAGAGGCGAAGAGAC+AGG + Chr1:81559270-81559289 MsG0180004703.01.T01:intron 50.0%
TAACCAGGACGTGCCTTATG+GGG + Chr1:81558328-81558347 MsG0180004703.01.T01:CDS 50.0%
TAAGGTGGTAGAGCCATCCA+AGG + Chr1:81558655-81558674 MsG0180004703.01.T01:CDS 50.0%
TAATGGTGGCCATGCTTCAG+TGG + Chr1:81560580-81560599 MsG0180004703.01.T01:CDS 50.0%
TACAAGCCAGATCCCTAACC+AGG + Chr1:81560390-81560409 MsG0180004703.01.T01:CDS 50.0%
TAGCTGCAGGCCTTGCAAAA+TGG - Chr1:81558457-81558476 None:intergenic 50.0%
TCCAAGCGGTGAGTGTTCAA+AGG + Chr1:81558613-81558632 MsG0180004703.01.T01:CDS 50.0%
TCCTTTGAACACTCACCGCT+TGG - Chr1:81558617-81558636 None:intergenic 50.0%
TGTCATCAGCCACTGAAGCA+TGG - Chr1:81560592-81560611 None:intergenic 50.0%
TGTCCTGTGGATCCATACCT+CGG - Chr1:81560274-81560293 None:intergenic 50.0%
TGTGAAAATGCGGCCATGTG+TGG - Chr1:81559971-81559990 None:intergenic 50.0%
! AGCTGCTGAAAAAGGCATGG+AGG + Chr1:81558823-81558842 MsG0180004703.01.T01:CDS 50.0%
! CATGGCCGCATTTTCACAGA+TGG + Chr1:81559973-81559992 MsG0180004703.01.T01:CDS 50.0%
! CTTGGTGACAATGGCGCTAA+AGG + Chr1:81558794-81558813 MsG0180004703.01.T01:CDS 50.0%
! GCTGCGGCATTTCCTTTTTC+AGG + Chr1:81560217-81560236 MsG0180004703.01.T01:CDS 50.0%
! TGCTGAAAAAGGCATGGAGG+TGG + Chr1:81558826-81558845 MsG0180004703.01.T01:CDS 50.0%
! TTCAGCAGCACGGCTTCTTT+TGG - Chr1:81559126-81559145 None:intergenic 50.0%
!! ATGGGCATCGGCATGCATAT+GGG + Chr1:81559992-81560011 MsG0180004703.01.T01:CDS 50.0%
!! CGACCTCTAGGACTATGAGA+TGG - Chr1:81557846-81557865 None:intergenic 50.0%
!! CTGACTTCATACGGACTAGG+TGG + Chr1:81559723-81559742 MsG0180004703.01.T01:intron 50.0%
!! TTTGAGCTGGTTTGGGAGAG+TGG + Chr1:81557744-81557763 MsG0180004703.01.T01:CDS 50.0%
!!! GCGGCATTTCCTTTTTCAGG+AGG + Chr1:81560220-81560239 MsG0180004703.01.T01:CDS 50.0%
CAATGGTGCAGACAGAGGCT+CGG + Chr1:81558877-81558896 MsG0180004703.01.T01:CDS 55.0%
GAATGCCTGACATGAACGGC+GGG + Chr1:81560038-81560057 MsG0180004703.01.T01:CDS 55.0%
GACTAACGGCGCAAGTGTAG+CGG + Chr1:81557553-81557572 MsG0180004703.01.T01:CDS 55.0%
GCACATGCATGCACCACACA+TGG + Chr1:81559955-81559974 MsG0180004703.01.T01:CDS 55.0%
GCCGCCTTCTTCGTCCATTT+GGG + Chr1:81556750-81556769 MsG0180004703.01.T01:five_prime_UTR 55.0%
GGAATGCCTGACATGAACGG+CGG + Chr1:81560037-81560056 MsG0180004703.01.T01:CDS 55.0%
GGAGTTAAAAAGGGAGCGGC+TGG + Chr1:81559083-81559102 MsG0180004703.01.T01:CDS 55.0%
GGCATGGAAATTCCCTGTCC+CGG - Chr1:81560187-81560206 None:intergenic 55.0%
GGCCATTCCATGCATAGCAG+AGG - Chr1:81560137-81560156 None:intergenic 55.0%
GGTAACCAGGACGTGCCTTA+TGG + Chr1:81558326-81558345 MsG0180004703.01.T01:CDS 55.0%
TATCCCCATAAGGCACGTCC+TGG - Chr1:81558334-81558353 None:intergenic 55.0%
TCTGGCAATGGTGCAGACAG+AGG + Chr1:81558872-81558891 MsG0180004703.01.T01:CDS 55.0%
TGCATGTGCTGCATTCCAGC+AGG - Chr1:81559944-81559963 None:intergenic 55.0%
TTTGAGCCACACGCTGAAGC+CGG - Chr1:81560313-81560332 None:intergenic 55.0%
!! GATGGGCATCGGCATGCATA+TGG + Chr1:81559991-81560010 MsG0180004703.01.T01:CDS 55.0%
!! TGGGCATCGGCATGCATATG+GGG + Chr1:81559993-81560012 MsG0180004703.01.T01:CDS 55.0%
AAAAAGGGAGCGGCTGGACG+AGG + Chr1:81559089-81559108 MsG0180004703.01.T01:CDS 60.0%
AATGCCGCAGCATGCGGCAT+TGG - Chr1:81560208-81560227 None:intergenic 60.0%
AGGGTTTGGACTTCCGGGAC+AGG + Chr1:81560171-81560190 MsG0180004703.01.T01:CDS 60.0%
ATGCCCGTTGCGCATATGCC+TGG + Chr1:81560109-81560128 MsG0180004703.01.T01:CDS 60.0%
CATGCCAATGCCGCATGCTG+CGG + Chr1:81560201-81560220 MsG0180004703.01.T01:CDS 60.0%
CCATGCATAGCAGAGGGTCC+AGG - Chr1:81560130-81560149 None:intergenic 60.0%
CCTGGACCCTCTGCTATGCA+TGG + Chr1:81560127-81560146 MsG0180004703.01.T01:CDS 60.0%
CGCCGCCTTCTTCGTCCATT+TGG + Chr1:81556749-81556768 MsG0180004703.01.T01:five_prime_UTR 60.0%
GGGTCCAGGCATATGCGCAA+CGG - Chr1:81560116-81560135 None:intergenic 60.0%
GGGTTTGGACTTCCGGGACA+GGG + Chr1:81560172-81560191 MsG0180004703.01.T01:CDS 60.0%
GGTCCAGGCATATGCGCAAC+GGG - Chr1:81560115-81560134 None:intergenic 60.0%
GGTCCGAGGTATGGATCCAC+AGG + Chr1:81560268-81560287 MsG0180004703.01.T01:CDS 60.0%
GTGAATCCGGCTTCAGCGTG+TGG + Chr1:81560304-81560323 MsG0180004703.01.T01:CDS 60.0%
GTGGATCCATACCTCGGACC+CGG - Chr1:81560268-81560287 None:intergenic 60.0%
!! TCGCGAGATGGCACCGACAT+TGG - Chr1:81557954-81557973 None:intergenic 60.0%
TCCATACCTCGGACCCGGAG+CGG - Chr1:81560263-81560282 None:intergenic 65.0%
!! CGCAGCATGCGGCATTGGCA+TGG - Chr1:81560203-81560222 None:intergenic 65.0%
ACTCATCCGCTCCGGGTCCG+AGG + Chr1:81560254-81560273 MsG0180004703.01.T01:CDS 70.0%
GACGGCCCGCCGTTCATGTC+AGG - Chr1:81560046-81560065 None:intergenic 70.0%
GCGGCTGGACGAGGAGTTGC+AGG + Chr1:81559098-81559117 MsG0180004703.01.T01:CDS 70.0%
TCCGCTCCGGGTCCGAGGTA+TGG + Chr1:81560259-81560278 MsG0180004703.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 81556703 81561127 81556703 ID=MsG0180004703.01;Name=MsG0180004703.01
Chr1 mRNA 81556703 81561127 81556703 ID=MsG0180004703.01.T01;Parent=MsG0180004703.01;Name=MsG0180004703.01.T01;_AED=0.19;_eAED=0.20;_QI=572|0.85|0.75|1|0.57|0.25|8|351|715
Chr1 exon 81556703 81557109 81556703 ID=MsG0180004703.01.T01:exon:8436;Parent=MsG0180004703.01.T01
Chr1 exon 81557338 81557588 81557338 ID=MsG0180004703.01.T01:exon:8437;Parent=MsG0180004703.01.T01
Chr1 five_prime_UTR 81556703 81557109 81556703 ID=MsG0180004703.01.T01:five_prime_utr;Parent=MsG0180004703.01.T01
Chr1 five_prime_UTR 81557338 81557502 81557338 ID=MsG0180004703.01.T01:five_prime_utr;Parent=MsG0180004703.01.T01
Chr1 CDS 81557503 81557588 81557503 ID=MsG0180004703.01.T01:cds;Parent=MsG0180004703.01.T01
Chr1 CDS 81557728 81558964 81557728 ID=MsG0180004703.01.T01:cds;Parent=MsG0180004703.01.T01
Chr1 CDS 81559062 81559166 81559062 ID=MsG0180004703.01.T01:cds;Parent=MsG0180004703.01.T01
Chr1 CDS 81559278 81559347 81559278 ID=MsG0180004703.01.T01:cds;Parent=MsG0180004703.01.T01
Chr1 CDS 81559843 81560411 81559843 ID=MsG0180004703.01.T01:cds;Parent=MsG0180004703.01.T01
Chr1 CDS 81560566 81560646 81560566 ID=MsG0180004703.01.T01:cds;Parent=MsG0180004703.01.T01
Chr1 three_prime_UTR 81560647 81560649 81560647 ID=MsG0180004703.01.T01:three_prime_utr;Parent=MsG0180004703.01.T01
Chr1 three_prime_UTR 81560780 81561127 81560780 ID=MsG0180004703.01.T01:three_prime_utr;Parent=MsG0180004703.01.T01
Chr1 mRNA 81557253 81561127 81557253 ID=MsG0180004703.01.T02;Parent=MsG0180004703.01;Name=MsG0180004703.01.T02;_AED=0.22;_eAED=0.23;_QI=250|0.83|0.71|1|0.66|0.42|7|351|715
Chr1 exon 81557253 81557588 81557253 ID=MsG0180004703.01.T02:exon:8444;Parent=MsG0180004703.01.T02
Chr1 five_prime_UTR 81557253 81557502 81557253 ID=MsG0180004703.01.T02:five_prime_utr;Parent=MsG0180004703.01.T02
Chr1 CDS 81557503 81557588 81557503 ID=MsG0180004703.01.T02:cds;Parent=MsG0180004703.01.T02
Chr1 CDS 81557728 81558964 81557728 ID=MsG0180004703.01.T02:cds;Parent=MsG0180004703.01.T02
Chr1 CDS 81559062 81559166 81559062 ID=MsG0180004703.01.T02:cds;Parent=MsG0180004703.01.T02
Chr1 CDS 81559278 81559347 81559278 ID=MsG0180004703.01.T02:cds;Parent=MsG0180004703.01.T02
Chr1 CDS 81559843 81560411 81559843 ID=MsG0180004703.01.T02:cds;Parent=MsG0180004703.01.T02
Chr1 CDS 81560566 81560646 81560566 ID=MsG0180004703.01.T02:cds;Parent=MsG0180004703.01.T02
Chr1 three_prime_UTR 81560647 81560649 81560647 ID=MsG0180004703.01.T02:three_prime_utr;Parent=MsG0180004703.01.T02
Chr1 three_prime_UTR 81560780 81561127 81560780 ID=MsG0180004703.01.T02:three_prime_utr;Parent=MsG0180004703.01.T02
Gene Sequence

>MsG0180004703.01.T01

ATGCCTCTTTATGAGTTATACCGTTTGGCTAGAGAGAAGCTTGATAATGAGACTAACGGCGCAAGTGTAGCGGATCAACCTTCGTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGCCAAGGTCAATCAAGTAGAGGTAGAAAGAGTCCATCTTGTAGGAGTTTGCCATCTCACTGCTTACCATCTCATAGTCCTAGAGGTCGAGATAAAGACGTAGGAGGAGGATTTAGTAATAACAATCCAAAGATAGGAAAGTTTGGTGATTTAGACTCTGGATTGAATGAGATTCCAATGTCGGTGCCATCTCGCGAAGTAGATGAAATGATGCCTTGGTTGGATTATTCAATGGATGGCTCTTTGCAACACGAATATGGTTCTGATTTCTTTCATGAACTCACGGAGAACGACCTTCCTGCCTCGAATAGTTTTACTCTATTGGATAAAAAAAGTAATGGGAATCAGATATTTAGGGACTCTCATAAAAATTCTGCAGAACCGATGAATGTTTCTAAGGGTTCTTCAGCTGAACAGGTTGTTGAGACTGCAAGACATAAAGCTAGTGCCGGTCAGTTATATCCGCCATCATCGAATCAATGTCAAACAACATCTGTAACTGTTAGATCTAGGGCATCAGATATAACCGAAAATAATAATGTTAGCAGTGGTAACCAGGACGTGCCTTATGGGGATATTACTCGCATTCCATCTTCCTCGAGCGATTTTTCTAGCTTAAAAGCGCAGAAGCAAGATCCTATAATGCCTGGCAATGGTTCCAATGTAATGAATTTTTCCCATTTTGCAAGGCCTGCAGCTATTGTGAGAGCTAATCTTCAGAACATAGGCTTGAAGTCTGGTTTGAATTCAGCTTCAGCAAGATCAGATGTTATAGGAGTTAAGAATAAAGGCGCTGCTTCGACTAGCAGCAATCCTCCTGATTCAGCTCTTGTTAATCCAAGCGGTGAGTGTTCAAAGGAACCGGAAATGCGCTGTCATAAGGTGGTAGAGCCATCCAAGGCTGATTTGAAACCTTTGCAGCCGAAATTGCTTGAACCAAATGCTGTAGCTACTAAACAATCGAAGCCTGCTTGCAAAGAGAATGGAATTAAGAATGATCAACCTTCCATTCAAGTTCTTGGTGACAATGGCGCTAAAGGACACACAGCTGCTGAAAAAGGCATGGAGGTGGCAGTAGCCTCTTCTTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGCTCGGATGATCCAAATCGAGATTTGAAACGGAAAAGTAGAGACACTGAGGACTCTGAATGCCATAGTGAAGATGTTGAGGATGAATCAGTGGGAGTTAAAAAGGGAGCGGCTGGACGAGGAGTTGCAGGTTCCAAAAGAAGCCGTGCTGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTGCAAGAACTCATACCTAATTGCAATAAGGTTATTTTAAATTTTCTGATTGTAAACAATGTTGAGAGTGATTCCTATCTTACGCAGATGATGTCAATGGGAGCTGGTTTATATATGCCTCAAATGATGTTACCTGCTGGAATGCAGCACATGCATGCACCACACATGGCCGCATTTTCACAGATGGGCATCGGCATGCATATGGGGTTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAACGGCGGGCCGTCTAGATTTCCAATGATTCAAGTACCTCAGATGCAAGGAAATCATATGCCCGTTGCGCATATGCCTGGACCCTCTGCTATGCATGGAATGGCCAGATCGAATACTCAAGGGTTTGGACTTCCGGGACAGGGAATTTCCATGCCAATGCCGCATGCTGCGGCATTTCCTTTTTCAGGAGGGCCTCTTATGAACTCATCCGCTCCGGGTCCGAGGTATGGATCCACAGGACATGTTGAAGCTGTGAATCCGGCTTCAGCGTGTGGCTCAAAAGATCGAAGGCCAGATGTGGACTCACAAATTAAGCAAAACACTGCTGGTCGTGACTCTACAAGCCAGATCCCTAACCAGTCAACTTTGGTGCATAATGGTGGCCATGCTTCAGTGGCTGATGACAGTGAAGCTGCTAATCCGGGCAATATAAATTTGTGA

>MsG0180004703.01.T02

ATGCCTCTTTATGAGTTATACCGTTTGGCTAGAGAGAAGCTTGATAATGAGACTAACGGCGCAAGTGTAGCGGATCAACCTTCGTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGCCAAGGTCAATCAAGTAGAGGTAGAAAGAGTCCATCTTGTAGGAGTTTGCCATCTCACTGCTTACCATCTCATAGTCCTAGAGGTCGAGATAAAGACGTAGGAGGAGGATTTAGTAATAACAATCCAAAGATAGGAAAGTTTGGTGATTTAGACTCTGGATTGAATGAGATTCCAATGTCGGTGCCATCTCGCGAAGTAGATGAAATGATGCCTTGGTTGGATTATTCAATGGATGGCTCTTTGCAACACGAATATGGTTCTGATTTCTTTCATGAACTCACGGAGAACGACCTTCCTGCCTCGAATAGTTTTACTCTATTGGATAAAAAAAGTAATGGGAATCAGATATTTAGGGACTCTCATAAAAATTCTGCAGAACCGATGAATGTTTCTAAGGGTTCTTCAGCTGAACAGGTTGTTGAGACTGCAAGACATAAAGCTAGTGCCGGTCAGTTATATCCGCCATCATCGAATCAATGTCAAACAACATCTGTAACTGTTAGATCTAGGGCATCAGATATAACCGAAAATAATAATGTTAGCAGTGGTAACCAGGACGTGCCTTATGGGGATATTACTCGCATTCCATCTTCCTCGAGCGATTTTTCTAGCTTAAAAGCGCAGAAGCAAGATCCTATAATGCCTGGCAATGGTTCCAATGTAATGAATTTTTCCCATTTTGCAAGGCCTGCAGCTATTGTGAGAGCTAATCTTCAGAACATAGGCTTGAAGTCTGGTTTGAATTCAGCTTCAGCAAGATCAGATGTTATAGGAGTTAAGAATAAAGGCGCTGCTTCGACTAGCAGCAATCCTCCTGATTCAGCTCTTGTTAATCCAAGCGGTGAGTGTTCAAAGGAACCGGAAATGCGCTGTCATAAGGTGGTAGAGCCATCCAAGGCTGATTTGAAACCTTTGCAGCCGAAATTGCTTGAACCAAATGCTGTAGCTACTAAACAATCGAAGCCTGCTTGCAAAGAGAATGGAATTAAGAATGATCAACCTTCCATTCAAGTTCTTGGTGACAATGGCGCTAAAGGACACACAGCTGCTGAAAAAGGCATGGAGGTGGCAGTAGCCTCTTCTTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGCTCGGATGATCCAAATCGAGATTTGAAACGGAAAAGTAGAGACACTGAGGACTCTGAATGCCATAGTGAAGATGTTGAGGATGAATCAGTGGGAGTTAAAAAGGGAGCGGCTGGACGAGGAGTTGCAGGTTCCAAAAGAAGCCGTGCTGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTGCAAGAACTCATACCTAATTGCAATAAGGTTATTTTAAATTTTCTGATTGTAAACAATGTTGAGAGTGATTCCTATCTTACGCAGATGATGTCAATGGGAGCTGGTTTATATATGCCTCAAATGATGTTACCTGCTGGAATGCAGCACATGCATGCACCACACATGGCCGCATTTTCACAGATGGGCATCGGCATGCATATGGGGTTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAACGGCGGGCCGTCTAGATTTCCAATGATTCAAGTACCTCAGATGCAAGGAAATCATATGCCCGTTGCGCATATGCCTGGACCCTCTGCTATGCATGGAATGGCCAGATCGAATACTCAAGGGTTTGGACTTCCGGGACAGGGAATTTCCATGCCAATGCCGCATGCTGCGGCATTTCCTTTTTCAGGAGGGCCTCTTATGAACTCATCCGCTCCGGGTCCGAGGTATGGATCCACAGGACATGTTGAAGCTGTGAATCCGGCTTCAGCGTGTGGCTCAAAAGATCGAAGGCCAGATGTGGACTCACAAATTAAGCAAAACACTGCTGGTCGTGACTCTACAAGCCAGATCCCTAACCAGTCAACTTTGGTGCATAATGGTGGCCATGCTTCAGTGGCTGATGACAGTGAAGCTGCTAATCCGGGCAATATAAATTTGTGA
Protein sequence

>MsG0180004703.01.T01

MPLYELYRLAREKLDNETNGASVADQPSSPENDFFELVWESGQISSQGQSSRGRKSPSCRSLPSHCLPSHSPRGRDKDVGGGFSNNNPKIGKFGDLDSGLNEIPMSVPSREVDEMMPWLDYSMDGSLQHEYGSDFFHELTENDLPASNSFTLLDKKSNGNQIFRDSHKNSAEPMNVSKGSSAEQVVETARHKASAGQLYPPSSNQCQTTSVTVRSRASDITENNNVSSGNQDVPYGDITRIPSSSSDFSSLKAQKQDPIMPGNGSNVMNFSHFARPAAIVRANLQNIGLKSGLNSASARSDVIGVKNKGAASTSSNPPDSALVNPSGECSKEPEMRCHKVVEPSKADLKPLQPKLLEPNAVATKQSKPACKENGIKNDQPSIQVLGDNGAKGHTAAEKGMEVAVASSSVCSGNGADRGSDDPNRDLKRKSRDTEDSECHSEDVEDESVGVKKGAAGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVILNFLIVNNVESDSYLTQMMSMGAGLYMPQMMLPAGMQHMHAPHMAAFSQMGIGMHMGLGMGYGMGMPDMNGGPSRFPMIQVPQMQGNHMPVAHMPGPSAMHGMARSNTQGFGLPGQGISMPMPHAAAFPFSGGPLMNSSAPGPRYGSTGHVEAVNPASACGSKDRRPDVDSQIKQNTAGRDSTSQIPNQSTLVHNGGHASVADDSEAANPGNINL*

>MsG0180004703.01.T02

MPLYELYRLAREKLDNETNGASVADQPSSPENDFFELVWESGQISSQGQSSRGRKSPSCRSLPSHCLPSHSPRGRDKDVGGGFSNNNPKIGKFGDLDSGLNEIPMSVPSREVDEMMPWLDYSMDGSLQHEYGSDFFHELTENDLPASNSFTLLDKKSNGNQIFRDSHKNSAEPMNVSKGSSAEQVVETARHKASAGQLYPPSSNQCQTTSVTVRSRASDITENNNVSSGNQDVPYGDITRIPSSSSDFSSLKAQKQDPIMPGNGSNVMNFSHFARPAAIVRANLQNIGLKSGLNSASARSDVIGVKNKGAASTSSNPPDSALVNPSGECSKEPEMRCHKVVEPSKADLKPLQPKLLEPNAVATKQSKPACKENGIKNDQPSIQVLGDNGAKGHTAAEKGMEVAVASSSVCSGNGADRGSDDPNRDLKRKSRDTEDSECHSEDVEDESVGVKKGAAGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVILNFLIVNNVESDSYLTQMMSMGAGLYMPQMMLPAGMQHMHAPHMAAFSQMGIGMHMGLGMGYGMGMPDMNGGPSRFPMIQVPQMQGNHMPVAHMPGPSAMHGMARSNTQGFGLPGQGISMPMPHAAAFPFSGGPLMNSSAPGPRYGSTGHVEAVNPASACGSKDRRPDVDSQIKQNTAGRDSTSQIPNQSTLVHNGGHASVADDSEAANPGNINL*