AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005166.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005166.01.T01 MTR_1g093680 74.436 399 29 2 10 335 51 449 0.0 585
MsG0180005166.01.T01 MTR_5g053430 56.825 359 86 3 10 306 51 402 1.78e-132 385
MsG0180005166.01.T01 MTR_5g053430 57.382 359 87 4 10 306 51 405 4.02e-132 384
MsG0180005166.01.T01 MTR_1g093670 59.517 331 66 6 10 305 16 313 8.31e-122 354
MsG0180005166.01.T01 MTR_2g014680 46.766 201 73 2 11 177 47 247 1.97e-50 170
MsG0180005166.01.T01 MTR_8g102240 49.451 182 51 3 13 153 43 224 2.58e-50 174
MsG0180005166.01.T01 MTR_8g102240 49.451 182 51 3 13 153 43 224 2.63e-50 174
MsG0180005166.01.T01 MTR_4g088245 50.292 171 51 2 13 149 64 234 1.88e-48 166
MsG0180005166.01.T01 MTR_7g033320 47.953 171 54 2 10 145 48 218 3.01e-46 164
MsG0180005166.01.T01 MTR_4g078875 48.256 172 54 2 13 149 44 215 2.28e-45 156
MsG0180005166.01.T01 MTR_8g069160 50.000 160 46 2 13 138 64 223 1.20e-44 154
MsG0180005166.01.T01 MTR_2g090735 49.419 172 53 2 12 149 44 215 1.01e-41 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005166.01.T01 AT1G25580 44.920 374 125 9 10 309 51 417 8.90e-87 268
MsG0180005166.01.T01 AT4G29230 51.429 175 43 3 12 144 43 217 2.22e-52 179
MsG0180005166.01.T01 AT4G29230 51.429 175 43 3 12 144 43 217 9.79e-52 179
MsG0180005166.01.T01 AT4G29230 51.149 174 43 3 13 144 43 216 4.50e-51 177
MsG0180005166.01.T01 AT5G14490 45.050 202 69 4 10 176 48 242 1.74e-49 167
MsG0180005166.01.T01 AT5G14490 45.050 202 69 5 10 176 48 242 2.61e-49 169
MsG0180005166.01.T01 AT5G14490 45.050 202 69 5 10 176 51 245 2.90e-49 169
MsG0180005166.01.T01 AT5G14490 45.050 202 69 5 10 176 51 245 6.15e-49 168
MsG0180005166.01.T01 AT3G01600 49.143 175 51 4 14 153 52 223 3.01e-48 166
MsG0180005166.01.T01 AT5G56620 46.591 176 49 2 14 144 40 215 1.39e-47 166
MsG0180005166.01.T01 AT5G56620 46.591 176 49 2 14 144 40 215 1.66e-47 166
MsG0180005166.01.T01 AT5G56620 46.591 176 49 2 14 144 40 215 2.39e-47 164
MsG0180005166.01.T01 AT1G28470 49.419 172 53 2 12 149 72 243 2.35e-46 160
MsG0180005166.01.T01 AT4G28500 47.977 173 55 2 12 149 54 226 6.41e-46 159

Find 71 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATATGTGGTCAAGATTT+TGG 0.149918 1:+87876160 MsG0180005166.01.T01:CDS
CTTTCTGTATATGCTCATTT+AGG 0.224428 1:+87877509 MsG0180005166.01.T01:CDS
CCAGCAGCAGCAAGCCAAAT+TGG 0.225006 1:+87876387 MsG0180005166.01.T01:CDS
CAGTGTCAGCGTCAAGATTA+AGG 0.257120 1:-87877613 None:intergenic
ACAGTTGCTTCCGAGGTTTC+AGG 0.268678 1:-87876433 None:intergenic
CCTTACATGGACATGGATAT+TGG 0.273710 1:+87875573 None:intergenic
CTTTCGGCTTCCAGTATTAT+AGG 0.275483 1:-87876131 None:intergenic
CATCTGATCAAGAGATAATA+TGG 0.323541 1:+87875856 MsG0180005166.01.T01:CDS
GCAATCAAAGCCTATAATAC+TGG 0.327546 1:+87876121 MsG0180005166.01.T01:CDS
TTCTCATTGCGAGGAGGTTC+AGG 0.331317 1:-87876493 None:intergenic
CCGAGGTTTCAGGAACATTT+CGG 0.345511 1:-87876423 None:intergenic
TATAGGCTTTGATTGCTCTA+TGG 0.349409 1:-87876114 None:intergenic
AGGTTCAGGCGTCACGGAAT+TGG 0.365916 1:-87876479 None:intergenic
AGATTCTACCAGATCTTTCT+CGG 0.381982 1:+87877261 MsG0180005166.01.T01:intron
GGTTCAGGCGTCACGGAATT+GGG 0.400382 1:-87876478 None:intergenic
GAAAAGCTGAGAAAACTAAC+TGG 0.402325 1:+87876290 MsG0180005166.01.T01:CDS
CCAATTTGGCTTGCTGCTGC+TGG 0.410429 1:-87876387 None:intergenic
CAGATCTTTCTCGGTTAGAA+TGG 0.419534 1:+87877270 MsG0180005166.01.T01:CDS
CAGTGTCAAGGTTGAAACTT+TGG 0.420232 1:-87877660 None:intergenic
TGGAACAGAAGAGGATGAAA+AGG 0.444567 1:+87876333 MsG0180005166.01.T01:CDS
ATAGAAACTCAAACTAATGA+AGG 0.445370 1:+87877347 MsG0180005166.01.T01:CDS
CAGCAGCAGCAAGCCAAATT+GGG 0.449148 1:+87876388 MsG0180005166.01.T01:CDS
AGAATGGCTACTTGAAAGTC+AGG 0.455673 1:+87877286 MsG0180005166.01.T01:CDS
TTCAAAGCCAGTCTCCGAAA+AGG 0.459349 1:+87877450 MsG0180005166.01.T01:CDS
TGGGGAAAACGGAGAGCAAA+TGG 0.462093 1:+87877475 MsG0180005166.01.T01:CDS
GACGTCCGCTGGCACAAGAC+TGG 0.472180 1:+87876184 MsG0180005166.01.T01:CDS
CATCCTCTTCTGTTCCAAGA+TGG 0.472200 1:-87876327 None:intergenic
GCCAGTCTCCGAAAAGGGAT+GGG 0.488185 1:+87877456 MsG0180005166.01.T01:CDS
CTAAACCTATCCTCTTGAAC+GGG 0.489073 1:+87876212 MsG0180005166.01.T01:CDS
GGAAGCAACTGTTATAAAAG+TGG 0.494051 1:+87876444 MsG0180005166.01.T01:CDS
CATTCTAACCGAGAAAGATC+TGG 0.494095 1:-87877269 None:intergenic
TCAAAGCCAGTCTCCGAAAA+GGG 0.504914 1:+87877451 MsG0180005166.01.T01:CDS
TTAGTTTGAGTTTCTATAGT+CGG 0.506830 1:-87877341 None:intergenic
GTTATGCATCAATACCATCT+TGG 0.511788 1:+87876313 MsG0180005166.01.T01:CDS
TTAACACCTCTAGGTAATCC+AGG 0.513694 1:-87875825 None:intergenic
CCGAAAAGGGATGGGGAAAA+CGG 0.514006 1:+87877464 MsG0180005166.01.T01:CDS
AGCCAGTCTCCGAAAAGGGA+TGG 0.526505 1:+87877455 MsG0180005166.01.T01:CDS
TCCTTCCAGTCTTGTGCCAG+CGG 0.528576 1:-87876189 None:intergenic
AATGTAGGTGTTTCACGAGA+TGG 0.528910 1:+87876073 MsG0180005166.01.T01:intron
ACAGAAGAGGATGAAAAGGA+TGG 0.529217 1:+87876337 MsG0180005166.01.T01:CDS
CCGAAATGTTCCTGAAACCT+CGG 0.530415 1:+87876423 MsG0180005166.01.T01:CDS
TAGGTAACACAAGAGTGGCC+TGG 0.532893 1:+87875807 MsG0180005166.01.T01:intron
CATATTATCTCTTGATCAGA+TGG 0.535616 1:-87875855 None:intergenic
TAGAAACTCAAACTAATGAA+GGG 0.541977 1:+87877348 MsG0180005166.01.T01:CDS
AGAATCTCATCATAGTCCTC+AGG 0.542768 1:+87876543 MsG0180005166.01.T01:CDS
CTTTATATGACTCCGGAGAG+TGG 0.548324 1:+87876265 MsG0180005166.01.T01:CDS
CTTTCTGAAGCCCGTTCAAG+AGG 0.552172 1:-87876222 None:intergenic
TTGAAAGAAATCTGCGAACA+AGG 0.555766 1:-87877432 None:intergenic
GCTCTACATTTGCAGTGTCA+AGG 0.556566 1:-87877672 None:intergenic
TATTGGCGATCTCAAATGCT+TGG 0.557000 1:+87875590 MsG0180005166.01.T01:CDS
CTCTTGAACGGGCTTCAGAA+AGG 0.560131 1:+87876223 MsG0180005166.01.T01:CDS
CCAGTCTCCGAAAAGGGATG+GGG 0.561705 1:+87877457 MsG0180005166.01.T01:CDS
TGAAGCCCGTTCAAGAGGAT+AGG 0.565498 1:-87876217 None:intergenic
GTCACGGAATTGGGAGTGAC+TGG 0.565831 1:-87876469 None:intergenic
TGGCACTTGCGTGCAAAAGT+TGG 0.568756 1:+87875876 MsG0180005166.01.T01:CDS
TATGGTACTTTATATGACTC+CGG 0.573390 1:+87876258 MsG0180005166.01.T01:CDS
GGATCAAATTTAACACCTCT+AGG 0.573417 1:-87875834 None:intergenic
TCCGCTGGCACAAGACTGGA+AGG 0.577786 1:+87876188 MsG0180005166.01.T01:CDS
GAACATTGCTTCTCATTGCG+AGG 0.584286 1:-87876502 None:intergenic
ACTAAACCTATCCTCTTGAA+CGG 0.585397 1:+87876211 MsG0180005166.01.T01:CDS
GCGAGGAGGTTCAGGCGTCA+CGG 0.600720 1:-87876485 None:intergenic
AATTCACAGCAACTTGCGGA+AGG 0.600786 1:+87877404 MsG0180005166.01.T01:CDS
CATTGCTTCTCATTGCGAGG+AGG 0.622091 1:-87876499 None:intergenic
ATTGAATTCACAGCAACTTG+CGG 0.627276 1:+87877400 MsG0180005166.01.T01:CDS
GTTGTTAGGTAACACAAGAG+TGG 0.628897 1:+87875802 MsG0180005166.01.T01:intron
AAAAGCTGAGAAAACTAACT+GGG 0.630819 1:+87876291 MsG0180005166.01.T01:CDS
ATACCATCTTGGAACAGAAG+AGG 0.631271 1:+87876324 MsG0180005166.01.T01:CDS
AGAAACTCAAACTAATGAAG+GGG 0.644054 1:+87877349 MsG0180005166.01.T01:CDS
TGAGCATATACAGAAAGACT+AGG 0.654781 1:-87877503 None:intergenic
GAGTGGCCTGGATTACCTAG+AGG 0.709350 1:+87875819 MsG0180005166.01.T01:CDS
TATATGACTCCGGAGAGTGG+AGG 0.710802 1:+87876268 MsG0180005166.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAGAATTTATTTCAATGA+AGG - Chr1:87877083-87877102 None:intergenic 15.0%
!!! ATTAATGCTTAAAACATTTT+TGG - Chr1:87876839-87876858 None:intergenic 15.0%
!!! TTAAATGCTTAAAACATTTT+TGG - Chr1:87876695-87876714 None:intergenic 15.0%
!! AAAGCAGGTATTAAAAAATA+AGG - Chr1:87877117-87877136 None:intergenic 20.0%
!! AAGAACAAAATTATCAACAT+AGG - Chr1:87877223-87877242 None:intergenic 20.0%
!! AAGTATCACTGTTATAAAAA+CGG - Chr1:87875634-87875653 None:intergenic 20.0%
!! ATTTATCACTACTCTTAAAA+TGG + Chr1:87875934-87875953 MsG0180005166.01.T01:intron 20.0%
!! GCTATATGATTATAAAATGT+AGG + Chr1:87876058-87876077 MsG0180005166.01.T01:intron 20.0%
!! TTTCAAATGATTTATTTGTG+TGG + Chr1:87877024-87877043 MsG0180005166.01.T01:intron 20.0%
!!! AAAAATGCCAATAAACTTTT+AGG - Chr1:87875686-87875705 None:intergenic 20.0%
!!! AAATGTTTTAAGCATTAATG+TGG + Chr1:87876840-87876859 MsG0180005166.01.T01:intron 20.0%
!!! AAGCTTTATTCAAATTTGAA+TGG + Chr1:87876007-87876026 MsG0180005166.01.T01:intron 20.0%
!!! AATGTTTTAAGCATTTAATG+TGG + Chr1:87876697-87876716 MsG0180005166.01.T01:intron 20.0%
!!! GTGATTAATTTTGATAGTTT+TGG + Chr1:87877163-87877182 MsG0180005166.01.T01:intron 20.0%
!!! TAAAAAATAAGGCATTAAGA+AGG - Chr1:87877106-87877125 None:intergenic 20.0%
!!! TTTCAAAGTTTTATGTTGTT+AGG + Chr1:87875788-87875807 MsG0180005166.01.T01:intron 20.0%
! ATAATCTGACACAATATTCT+TGG + Chr1:87876917-87876936 MsG0180005166.01.T01:intron 25.0%
! ATAGAAACTCAAACTAATGA+AGG + Chr1:87877347-87877366 MsG0180005166.01.T01:CDS 25.0%
! ATCAGCATAATTCATTAAAC+AGG - Chr1:87876973-87876992 None:intergenic 25.0%
! TAATCTGACACAATATTCTT+GGG + Chr1:87876918-87876937 MsG0180005166.01.T01:intron 25.0%
! TAGAAACTCAAACTAATGAA+GGG + Chr1:87877348-87877367 MsG0180005166.01.T01:CDS 25.0%
!! AAAATATGTGGTCAAGATTT+TGG + Chr1:87876160-87876179 MsG0180005166.01.T01:CDS 25.0%
!! AAACAGGCAAATCAATTTTT+GGG - Chr1:87876957-87876976 None:intergenic 25.0%
!! TAAACAGGCAAATCAATTTT+TGG - Chr1:87876958-87876977 None:intergenic 25.0%
!! TTAGTTTGAGTTTCTATAGT+CGG - Chr1:87877344-87877363 None:intergenic 25.0%
!!! ATTATGCTGATTTGATTAGA+AGG + Chr1:87876982-87877001 MsG0180005166.01.T01:intron 25.0%
!!! TTGTATGTTTTCCTTTGTTT+TGG + Chr1:87876592-87876611 MsG0180005166.01.T01:intron 25.0%
!!! TTTTAATACCTGCTTTGAAT+GGG + Chr1:87877121-87877140 MsG0180005166.01.T01:intron 25.0%
!!! TTTTTAATACCTGCTTTGAA+TGG + Chr1:87877120-87877139 MsG0180005166.01.T01:intron 25.0%
AAAAGCTGAGAAAACTAACT+GGG + Chr1:87876291-87876310 MsG0180005166.01.T01:CDS 30.0%
AATCTGACACAATATTCTTG+GGG + Chr1:87876919-87876938 MsG0180005166.01.T01:intron 30.0%
ACATACAACACGAAAATTAG+TGG - Chr1:87876580-87876599 None:intergenic 30.0%
ACTACTCTTAAAATGGATGA+TGG + Chr1:87875941-87875960 MsG0180005166.01.T01:intron 30.0%
AGAAACTCAAACTAATGAAG+GGG + Chr1:87877349-87877368 MsG0180005166.01.T01:CDS 30.0%
AGATGTTAAACTCATAATGC+TGG + Chr1:87876747-87876766 MsG0180005166.01.T01:intron 30.0%
AGTGATAAATTCATCGATGA+AGG - Chr1:87875924-87875943 None:intergenic 30.0%
ATAAATTCATCGATGAAGGA+TGG - Chr1:87875920-87875939 None:intergenic 30.0%
ATTTATTTCAATGAAGGCAG+CGG - Chr1:87877077-87877096 None:intergenic 30.0%
CAAATGATTTATTTGTGTGG+TGG + Chr1:87877027-87877046 MsG0180005166.01.T01:intron 30.0%
CATATTATCTCTTGATCAGA+TGG - Chr1:87875858-87875877 None:intergenic 30.0%
CATCTGATCAAGAGATAATA+TGG + Chr1:87875856-87875875 MsG0180005166.01.T01:CDS 30.0%
CTTTCTGTATATGCTCATTT+AGG + Chr1:87877509-87877528 MsG0180005166.01.T01:CDS 30.0%
GAAAGGCTGTAAAAAGATTA+TGG + Chr1:87876240-87876259 MsG0180005166.01.T01:CDS 30.0%
TAAATTCATCGATGAAGGAT+GGG - Chr1:87875919-87875938 None:intergenic 30.0%
TACCTGTCCTAAAAGTTTAT+TGG + Chr1:87875676-87875695 MsG0180005166.01.T01:intron 30.0%
TATCTGTGACTTCAGATATA+AGG - Chr1:87875658-87875677 None:intergenic 30.0%
TATGGTACTTTATATGACTC+CGG + Chr1:87876258-87876277 MsG0180005166.01.T01:CDS 30.0%
TCTGACACAATATTCATTTG+TGG + Chr1:87876780-87876799 MsG0180005166.01.T01:intron 30.0%
!!! TTTTCCTTTGTTTTGGAAGA+GGG + Chr1:87876599-87876618 MsG0180005166.01.T01:intron 30.0%
AAATTCATCGATGAAGGATG+GGG - Chr1:87875918-87875937 None:intergenic 35.0%
ACTAAACCTATCCTCTTGAA+CGG + Chr1:87876211-87876230 MsG0180005166.01.T01:CDS 35.0%
AGATTCTACCAGATCTTTCT+CGG + Chr1:87877261-87877280 MsG0180005166.01.T01:intron 35.0%
ATTGAATTCACAGCAACTTG+CGG + Chr1:87877400-87877419 MsG0180005166.01.T01:CDS 35.0%
CGCAAAATCGCATATAATCA+AGG - Chr1:87876648-87876667 None:intergenic 35.0%
GAAAAGCTGAGAAAACTAAC+TGG + Chr1:87876290-87876309 MsG0180005166.01.T01:CDS 35.0%
GCAATCAAAGCCTATAATAC+TGG + Chr1:87876121-87876140 MsG0180005166.01.T01:CDS 35.0%
GGAAGCAACTGTTATAAAAG+TGG + Chr1:87876444-87876463 MsG0180005166.01.T01:CDS 35.0%
GGATCAAATTTAACACCTCT+AGG - Chr1:87875837-87875856 None:intergenic 35.0%
GTTAAACTCATAATGCTGGT+TGG + Chr1:87876751-87876770 MsG0180005166.01.T01:intron 35.0%
GTTATGCATCAATACCATCT+TGG + Chr1:87876313-87876332 MsG0180005166.01.T01:CDS 35.0%
TGAGCATATACAGAAAGACT+AGG - Chr1:87877506-87877525 None:intergenic 35.0%
TTGAAAGAAATCTGCGAACA+AGG - Chr1:87877435-87877454 None:intergenic 35.0%
! AGTGGAAATGATTTTACCTG+AGG - Chr1:87876562-87876581 None:intergenic 35.0%
! TATAGGCTTTGATTGCTCTA+TGG - Chr1:87876117-87876136 None:intergenic 35.0%
! TGATTATATGCGATTTTGCG+CGG + Chr1:87876648-87876667 MsG0180005166.01.T01:intron 35.0%
! TTTTATAACAGTTGCTTCCG+AGG - Chr1:87876443-87876462 None:intergenic 35.0%
!! CACATATTTTTCGACGCTTT+CGG - Chr1:87876150-87876169 None:intergenic 35.0%
!! GTCATCTTTTTCACCCAATT+TGG - Chr1:87876404-87876423 None:intergenic 35.0%
!!! GTTTTCCTTTGTTTTGGAAG+AGG + Chr1:87876598-87876617 MsG0180005166.01.T01:intron 35.0%
!!! TGCCAATAAACTTTTAGGAC+AGG - Chr1:87875681-87875700 None:intergenic 35.0%
!!! TTGATAGTTTTGGTTCGTGA+TGG + Chr1:87877173-87877192 MsG0180005166.01.T01:intron 35.0%
AATGTAGGTGTTTCACGAGA+TGG + Chr1:87876073-87876092 MsG0180005166.01.T01:intron 40.0%
ACAGAAGAGGATGAAAAGGA+TGG + Chr1:87876337-87876356 MsG0180005166.01.T01:CDS 40.0%
AGAATCTCATCATAGTCCTC+AGG + Chr1:87876543-87876562 MsG0180005166.01.T01:CDS 40.0%
AGAATGGCTACTTGAAAGTC+AGG + Chr1:87877286-87877305 MsG0180005166.01.T01:CDS 40.0%
ATACCATCTTGGAACAGAAG+AGG + Chr1:87876324-87876343 MsG0180005166.01.T01:CDS 40.0%
CAGATCTTTCTCGGTTAGAA+TGG + Chr1:87877270-87877289 MsG0180005166.01.T01:CDS 40.0%
CAGTGTCAAGGTTGAAACTT+TGG - Chr1:87877663-87877682 None:intergenic 40.0%
CATTCTAACCGAGAAAGATC+TGG - Chr1:87877272-87877291 None:intergenic 40.0%
CTAAACCTATCCTCTTGAAC+GGG + Chr1:87876212-87876231 MsG0180005166.01.T01:CDS 40.0%
CTTTCGGCTTCCAGTATTAT+AGG - Chr1:87876134-87876153 None:intergenic 40.0%
GTTGTTAGGTAACACAAGAG+TGG + Chr1:87875802-87875821 MsG0180005166.01.T01:intron 40.0%
TAATCACTCCCATTCAAAGC+AGG - Chr1:87877132-87877151 None:intergenic 40.0%
TACACCCTCTTCCAAAACAA+AGG - Chr1:87876606-87876625 None:intergenic 40.0%
TATTGGCGATCTCAAATGCT+TGG + Chr1:87875590-87875609 MsG0180005166.01.T01:CDS 40.0%
TGGAACAGAAGAGGATGAAA+AGG + Chr1:87876333-87876352 MsG0180005166.01.T01:CDS 40.0%
TTAACACCTCTAGGTAATCC+AGG - Chr1:87875828-87875847 None:intergenic 40.0%
! CATTTGTGGTTTTCTTTGCG+CGG + Chr1:87876794-87876813 MsG0180005166.01.T01:intron 40.0%
!! CGAAAGCGTCGAAAAATATG+TGG + Chr1:87876148-87876167 MsG0180005166.01.T01:CDS 40.0%
!!! ATAGTTTTGGTTCGTGATGG+TGG + Chr1:87877176-87877195 MsG0180005166.01.T01:intron 40.0%
AATTCACAGCAACTTGCGGA+AGG + Chr1:87877404-87877423 MsG0180005166.01.T01:CDS 45.0%
CAGTGTCAGCGTCAAGATTA+AGG - Chr1:87877616-87877635 None:intergenic 45.0%
CATCCTCTTCTGTTCCAAGA+TGG - Chr1:87876330-87876349 None:intergenic 45.0%
CCGAAATGTTCCTGAAACCT+CGG + Chr1:87876423-87876442 MsG0180005166.01.T01:CDS 45.0%
CCGAGGTTTCAGGAACATTT+CGG - Chr1:87876426-87876445 None:intergenic 45.0%
CTTTATATGACTCCGGAGAG+TGG + Chr1:87876265-87876284 MsG0180005166.01.T01:CDS 45.0%
GAACATTGCTTCTCATTGCG+AGG - Chr1:87876505-87876524 None:intergenic 45.0%
TAAAGCTTAGACTGTCCACC+TGG - Chr1:87875995-87876014 None:intergenic 45.0%
TCAAAGCCAGTCTCCGAAAA+GGG + Chr1:87877451-87877470 MsG0180005166.01.T01:CDS 45.0%
TTCAAAGCCAGTCTCCGAAA+AGG + Chr1:87877450-87877469 MsG0180005166.01.T01:CDS 45.0%
!! TTGCGTGCAAAAGTTGGTGA+AGG + Chr1:87875882-87875901 MsG0180005166.01.T01:intron 45.0%
ACAGTTGCTTCCGAGGTTTC+AGG - Chr1:87876436-87876455 None:intergenic 50.0%
ACTCATCCTCAGCGTTTACC+AGG + Chr1:87875974-87875993 MsG0180005166.01.T01:intron 50.0%
AGCGGCAAACATGCATCTGT+GGG - Chr1:87877059-87877078 None:intergenic 50.0%
CAGCAGCAGCAAGCCAAATT+GGG + Chr1:87876388-87876407 MsG0180005166.01.T01:CDS 50.0%
CATTGCTTCTCATTGCGAGG+AGG - Chr1:87876502-87876521 None:intergenic 50.0%
CCGAAAAGGGATGGGGAAAA+CGG + Chr1:87877464-87877483 MsG0180005166.01.T01:CDS 50.0%
TAGGTAACACAAGAGTGGCC+TGG + Chr1:87875807-87875826 MsG0180005166.01.T01:intron 50.0%
TATATGACTCCGGAGAGTGG+AGG + Chr1:87876268-87876287 MsG0180005166.01.T01:CDS 50.0%
TGAAGCCCGTTCAAGAGGAT+AGG - Chr1:87876220-87876239 None:intergenic 50.0%
TGGCACTTGCGTGCAAAAGT+TGG + Chr1:87875876-87875895 MsG0180005166.01.T01:CDS 50.0%
TGGGGAAAACGGAGAGCAAA+TGG + Chr1:87877475-87877494 MsG0180005166.01.T01:CDS 50.0%
TTCTCATTGCGAGGAGGTTC+AGG - Chr1:87876496-87876515 None:intergenic 50.0%
! CCGTTTTCCCCATCCCTTTT+CGG - Chr1:87877467-87877486 None:intergenic 50.0%
! CTCTTGAACGGGCTTCAGAA+AGG + Chr1:87876223-87876242 MsG0180005166.01.T01:CDS 50.0%
! TCAGCTTTTCCTCCACTCTC+CGG - Chr1:87876280-87876299 None:intergenic 50.0%
!! CTTTCTGAAGCCCGTTCAAG+AGG - Chr1:87876225-87876244 None:intergenic 50.0%
!! TGGTTCGTGATGGTGGTTTG+TGG + Chr1:87877183-87877202 MsG0180005166.01.T01:intron 50.0%
AGCCAGTCTCCGAAAAGGGA+TGG + Chr1:87877455-87877474 MsG0180005166.01.T01:CDS 55.0%
AGGTTCAGGCGTCACGGAAT+TGG - Chr1:87876482-87876501 None:intergenic 55.0%
CAGCGGCAAACATGCATCTG+TGG - Chr1:87877060-87877079 None:intergenic 55.0%
CATCCTCAGCGTTTACCAGG+TGG + Chr1:87875977-87875996 MsG0180005166.01.T01:intron 55.0%
CCAGCAGCAGCAAGCCAAAT+TGG + Chr1:87876387-87876406 MsG0180005166.01.T01:CDS 55.0%
CCAGTCTCCGAAAAGGGATG+GGG + Chr1:87877457-87877476 MsG0180005166.01.T01:CDS 55.0%
GAGTGGCCTGGATTACCTAG+AGG + Chr1:87875819-87875838 MsG0180005166.01.T01:CDS 55.0%
GCCAGTCTCCGAAAAGGGAT+GGG + Chr1:87877456-87877475 MsG0180005166.01.T01:CDS 55.0%
GGTTCAGGCGTCACGGAATT+GGG - Chr1:87876481-87876500 None:intergenic 55.0%
GTCACGGAATTGGGAGTGAC+TGG - Chr1:87876472-87876491 None:intergenic 55.0%
TGTCCACCTGGTAAACGCTG+AGG - Chr1:87875983-87876002 None:intergenic 55.0%
! TCCTTCCAGTCTTGTGCCAG+CGG - Chr1:87876192-87876211 None:intergenic 55.0%
!! AAGATTTTGGCGACGTCCGC+TGG + Chr1:87876173-87876192 MsG0180005166.01.T01:CDS 55.0%
!! CCAATTTGGCTTGCTGCTGC+TGG - Chr1:87876390-87876409 None:intergenic 55.0%
TCCGCTGGCACAAGACTGGA+AGG + Chr1:87876188-87876207 MsG0180005166.01.T01:CDS 60.0%
! CCCCATCCCTTTTCGGAGAC+TGG - Chr1:87877460-87877479 None:intergenic 60.0%
GACGTCCGCTGGCACAAGAC+TGG + Chr1:87876184-87876203 MsG0180005166.01.T01:CDS 65.0%
GCGAGGAGGTTCAGGCGTCA+CGG - Chr1:87876488-87876507 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 87875585 87877691 87875585 ID=MsG0180005166.01;Name=MsG0180005166.01
Chr1 mRNA 87875585 87877691 87875585 ID=MsG0180005166.01.T01;Parent=MsG0180005166.01;Name=MsG0180005166.01.T01;_AED=0.32;_eAED=0.36;_QI=0|0|0|0.75|1|1|4|0|342
Chr1 exon 87875585 87875611 87875585 ID=MsG0180005166.01.T01:exon:14317;Parent=MsG0180005166.01.T01
Chr1 exon 87875810 87875897 87875810 ID=MsG0180005166.01.T01:exon:14318;Parent=MsG0180005166.01.T01
Chr1 exon 87876080 87876564 87876080 ID=MsG0180005166.01.T01:exon:14319;Parent=MsG0180005166.01.T01
Chr1 exon 87877263 87877691 87877263 ID=MsG0180005166.01.T01:exon:14320;Parent=MsG0180005166.01.T01
Chr1 CDS 87875585 87875611 87875585 ID=MsG0180005166.01.T01:cds;Parent=MsG0180005166.01.T01
Chr1 CDS 87875810 87875897 87875810 ID=MsG0180005166.01.T01:cds;Parent=MsG0180005166.01.T01
Chr1 CDS 87876080 87876564 87876080 ID=MsG0180005166.01.T01:cds;Parent=MsG0180005166.01.T01
Chr1 CDS 87877263 87877691 87877263 ID=MsG0180005166.01.T01:cds;Parent=MsG0180005166.01.T01
Gene Sequence

>MsG0180005166.01.T01

ATGGATATTGGCGATCTCAAATGCTTGGTAACACAAGAGTGGCCTGGATTACCTAGAGGTGTTAAATTTGATCCATCTGATCAAGAGATAATATGGCACTTGCGTGCAAAAGTTGGTGTTTCACGAGATGGAATTGCTTCACACTTTTTCCATAGAGCAATCAAAGCCTATAATACTGGAAGCCGAAAGCGTCGAAAAATATGTGGTCAAGATTTTGGCGACGTCCGCTGGCACAAGACTGGAAGGACTAAACCTATCCTCTTGAACGGGCTTCAGAAAGGCTGTAAAAAGATTATGGTACTTTATATGACTCCGGAGAGTGGAGGAAAAGCTGAGAAAACTAACTGGGTTATGCATCAATACCATCTTGGAACAGAAGAGGATGAAAAGGATGGAGAATATGTTATTTCTAAAGTATTTTACCAGCAGCAGCAAGCCAAATTGGGTGAAAAAGATGACCGAAATGTTCCTGAAACCTCGGAAGCAACTGTTATAAAAGTGGATCCAGTCACTCCCAATTCCGTGACGCCTGAACCTCCTCGCAATGAGAAGCAATGTTCAGATGTAGAACAAGAACAAGAATCTCATCATAGTCCTCAGATTCTACCAGATCTTTCTCGGTTAGAATGGCTACTTGAAAGTCAGGATGACTGTGAAGAGCTTGCAAAAATTGACTCGCCGACTATAGAAACTCAAACTAATGAAGGGGTCGATAACATCGACTTGTCGCAGAATTTATTGAATTCACAGCAACTTGCGGAAGGACTTTCCTTGTTCGCAGATTTCTTTCAAAGCCAGTCTCCGAAAAGGGATGGGGAAAACGGAGAGCAAATGGAACGACCTAGTCTTTCTGTATATGCTCATTTAGGAGCAGAGCAATTGAAGAAAGATATTGAAGAGTGTCAAAATCTTGAACTTAACACTACAAAGAAGAATGATATTAAAGAATGCCTTAATCTTGACGCTGACACTGAAAAAAGAGCGATATCGAAGAGTGCCAAAGTTTCAACCTTGACACTGCAAATGTAG
Protein sequence

>MsG0180005166.01.T01

MDIGDLKCLVTQEWPGLPRGVKFDPSDQEIIWHLRAKVGVSRDGIASHFFHRAIKAYNTGSRKRRKICGQDFGDVRWHKTGRTKPILLNGLQKGCKKIMVLYMTPESGGKAEKTNWVMHQYHLGTEEDEKDGEYVISKVFYQQQQAKLGEKDDRNVPETSEATVIKVDPVTPNSVTPEPPRNEKQCSDVEQEQESHHSPQILPDLSRLEWLLESQDDCEELAKIDSPTIETQTNEGVDNIDLSQNLLNSQQLAEGLSLFADFFQSQSPKRDGENGEQMERPSLSVYAHLGAEQLKKDIEECQNLELNTTKKNDIKECLNLDADTEKRAISKSAKVSTLTLQM*