AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005508.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005508.01.T01 MTR_1g101810 88.462 338 25 3 17 340 30 367 0.0 558
MsG0180005508.01.T01 MTR_1g101810 88.724 337 24 3 18 340 1 337 0.0 557
MsG0180005508.01.T01 MTR_8g033070 51.661 271 101 11 78 332 76 332 1.60e-72 228
MsG0180005508.01.T01 MTR_2g006150 58.475 118 45 1 56 169 101 218 1.28e-37 140
MsG0180005508.01.T01 MTR_2g006150 58.475 118 45 1 56 169 101 218 1.32e-37 140
MsG0180005508.01.T01 MTR_7g028160 71.765 85 24 0 74 158 43 127 2.23e-36 133
MsG0180005508.01.T01 MTR_4g108370 54.264 129 48 3 31 148 36 164 4.42e-34 130
MsG0180005508.01.T01 MTR_5g039600 67.059 85 28 0 78 162 64 148 4.38e-33 127
MsG0180005508.01.T01 MTR_1g063870 82.090 67 12 0 77 143 45 111 1.06e-32 121
MsG0180005508.01.T01 MTR_1g038650 71.053 76 22 0 68 143 19 94 2.00e-31 118
MsG0180005508.01.T01 MTR_1g114380 68.750 80 25 0 74 153 26 105 4.90e-31 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005508.01.T01 AT5G51910 49.533 321 108 12 18 326 1 279 2.79e-76 236
MsG0180005508.01.T01 AT5G51910 49.533 321 108 12 18 326 1 279 2.79e-76 236
MsG0180005508.01.T01 AT2G45680 50.890 281 110 8 78 331 72 351 3.01e-67 215
MsG0180005508.01.T01 AT1G58100 71.264 87 18 2 78 157 57 143 3.90e-34 130
MsG0180005508.01.T01 AT3G27010 59.322 118 33 4 27 142 35 139 1.92e-33 126
MsG0180005508.01.T01 AT3G27010 59.322 118 33 4 27 142 35 139 1.92e-33 126
MsG0180005508.01.T01 AT1G69690 81.818 66 12 0 78 143 49 114 2.50e-33 126
MsG0180005508.01.T01 AT1G72010 69.620 79 24 0 75 153 57 135 5.79e-33 126
MsG0180005508.01.T01 AT3G47620 63.918 97 20 2 53 143 92 179 1.68e-32 127
MsG0180005508.01.T01 AT1G35560 68.966 87 20 2 78 157 52 138 6.85e-32 122
MsG0180005508.01.T01 AT5G23280 65.909 88 27 1 56 143 17 101 2.02e-31 119
MsG0180005508.01.T01 AT5G08330 78.261 69 15 0 75 143 25 93 5.48e-31 117
MsG0180005508.01.T01 AT5G41030 60.256 78 31 0 69 146 56 133 1.05e-27 108
MsG0180005508.01.T01 AT2G37000 76.667 60 14 0 81 140 43 102 1.73e-25 101
MsG0180005508.01.T01 AT3G45150 60.317 63 25 0 77 139 13 75 2.04e-21 90.1
MsG0180005508.01.T01 AT1G58100 86.111 36 5 0 78 113 57 92 1.40e-14 74.3

Find 103 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTCATTAAACTTGAATT+TGG 0.121922 1:-92672140 None:intergenic
TAAGAAAGAGTTGCAGTTTA+TGG 0.151782 1:+92672376 MsG0180005508.01.T01:CDS
GGGTTGTTCTTCTGCAAATT+TGG 0.196594 1:+92672397 MsG0180005508.01.T01:CDS
CCGTATGCTGTTTGAGCAAT+TGG 0.236628 1:-92672002 None:intergenic
TTTGAACCGGCATCGGAATA+AGG 0.270424 1:-92671608 None:intergenic
GATCAAGTTTCAATGTGTTC+TGG 0.294475 1:+92671972 MsG0180005508.01.T01:CDS
GGCGGCGGTGGTGGTGAAAA+TGG 0.305547 1:+92672041 MsG0180005508.01.T01:CDS
TAATGAATCAGCCACAGTTT+TGG 0.305680 1:+92672153 MsG0180005508.01.T01:CDS
CCTCGTCAGTTGAAAGATTC+TGG 0.326356 1:-92671727 None:intergenic
CGTATGCTGTTTGAGCAATT+GGG 0.328215 1:-92672001 None:intergenic
AAGAAAGAGTTGCAGTTTAT+GGG 0.351004 1:+92672377 MsG0180005508.01.T01:CDS
AGGGACGTGGTCGGAGAATC+AGG 0.360591 1:+92671685 MsG0180005508.01.T01:CDS
GATTCATTAAACTTGAATTT+GGG 0.361250 1:-92672139 None:intergenic
GCAGAAACAAAATCAGAAAT+AGG 0.368459 1:-92672215 None:intergenic
CTTCAAATACTCAGATGATA+AGG 0.371896 1:+92672330 MsG0180005508.01.T01:CDS
AACTTAAAGCTTCAATTTGA+AGG 0.378942 1:-92672440 None:intergenic
TTCAAATACTCAGATGATAA+GGG 0.380031 1:+92672331 MsG0180005508.01.T01:CDS
TTCAAATGCTTCATCTACTT+TGG 0.380509 1:+92672259 MsG0180005508.01.T01:CDS
ACCTCCGGTGGCGGCGGTGG+TGG 0.384186 1:+92672032 MsG0180005508.01.T01:CDS
CAGAAAACATCGCCGCCGTT+AGG 0.396092 1:-92671483 None:intergenic
GTGGTGGTTTAGTTCCATTA+TGG 0.415083 1:+92672063 MsG0180005508.01.T01:CDS
ACCACCTCCGGTGGCGGCGG+TGG 0.420445 1:+92672029 MsG0180005508.01.T01:CDS
GACAACGGAGCCTGCGGCGG+CGG 0.427457 1:+92671548 MsG0180005508.01.T01:CDS
TTACTTACAACAGGCCATAA+TGG 0.429653 1:-92672077 None:intergenic
TGGTCGGAGAATCAGGATTC+CGG 0.442503 1:+92671692 MsG0180005508.01.T01:CDS
ACCACCGCCGCCACCGGAGG+TGG 0.448519 1:-92672030 None:intergenic
ATTCTGGCGGCGCATGTCGC+CGG 0.450483 1:-92671711 None:intergenic
AAAGTAGATGAAGCATTTGA+AGG 0.463468 1:-92672257 None:intergenic
GCCACTGTCATCGTTTGAAC+CGG 0.470202 1:-92671621 None:intergenic
ATCATCGAAGCTACCGGCAC+TGG 0.470702 1:+92671813 MsG0180005508.01.T01:CDS
TTCAAATTGAAGCTTTAAGT+TGG 0.474582 1:+92672442 MsG0180005508.01.T01:exon
AACATCATCTCCGGCGAGAC+CGG 0.479647 1:+92671884 MsG0180005508.01.T01:CDS
AGAAAACATCGCCGCCGTTA+GGG 0.488008 1:-92671482 None:intergenic
ACCGCCGCCACCGGAGGTGG+TGG 0.490467 1:-92672027 None:intergenic
GGTGCCACCACCTCCGGTGG+CGG 0.492237 1:+92672023 MsG0180005508.01.T01:CDS
CTGTTGTAAGTAACGGTGTT+GGG 0.497781 1:+92672087 MsG0180005508.01.T01:CDS
CATCTGAGTATTTGAAGAAG+TGG 0.499530 1:-92672324 None:intergenic
TCTTTCATTACCGCCGCCGC+AGG 0.501320 1:-92671558 None:intergenic
CCAACACCGTTACTTACAAC+AGG 0.501497 1:-92672086 None:intergenic
GCCACCACCTCCGGTGGCGG+CGG 0.501891 1:+92672026 MsG0180005508.01.T01:CDS
GCATACGGTGCCACCACCTC+CGG 0.506126 1:+92672017 MsG0180005508.01.T01:CDS
GGTGTTGGGTCTAATACAAC+AGG 0.506356 1:+92672101 MsG0180005508.01.T01:CDS
ACCGGACGGTGAAGATGCTC+CGG 0.509905 1:+92671902 MsG0180005508.01.T01:CDS
GAAAGAAGAGCTAACGGAAA+CGG 0.511043 1:+92671575 MsG0180005508.01.T01:CDS
TTCACCACCACCGCCGCCAC+CGG 0.512971 1:-92672036 None:intergenic
TTTCAACTGACGAGGGAGCT+AGG 0.517084 1:+92671735 MsG0180005508.01.T01:CDS
GTCCCTCCACCTTCGTGTGA+CGG 0.518085 1:-92671668 None:intergenic
ACCGGAGCATCTTCACCGTC+CGG 0.521868 1:-92671903 None:intergenic
CCGGTAGCTTCGATGATAGA+AGG 0.522884 1:-92671807 None:intergenic
CCAATTGCTCAAACAGCATA+CGG 0.523616 1:+92672002 MsG0180005508.01.T01:CDS
CAGCTTGTTCTAGTAACCAC+CGG 0.530941 1:-92671782 None:intergenic
CCTTCTATCATCGAAGCTAC+CGG 0.531231 1:+92671807 MsG0180005508.01.T01:CDS
GTCATCGTTTGAACCGGCAT+CGG 0.531689 1:-92671615 None:intergenic
CAATTTGAAGGATTTGAAGA+GGG 0.533413 1:-92672428 None:intergenic
CAACAGCCTTATTCCGATGC+CGG 0.533446 1:+92671602 MsG0180005508.01.T01:CDS
GGCCGGCACAGTTCCAGTGC+CGG 0.539294 1:-92671826 None:intergenic
GAAGCATTTGAAGGTTCTTG+TGG 0.545348 1:-92672248 None:intergenic
CACACGAAGGTGGAGGGACG+TGG 0.552204 1:+92671672 MsG0180005508.01.T01:CDS
GAAGATTCCAACATCATCTC+CGG 0.553576 1:+92671875 MsG0180005508.01.T01:CDS
AGTATCTCCGTCGGAGACAA+CGG 0.553999 1:+92671533 MsG0180005508.01.T01:CDS
AGACCGTCACACGAAGGTGG+AGG 0.559373 1:+92671665 MsG0180005508.01.T01:CDS
CCGGCCATCGCTGTTTCCGT+CGG 0.560469 1:+92671843 MsG0180005508.01.T01:CDS
GCCATCGCTGTTTCCGTCGG+AGG 0.562359 1:+92671846 MsG0180005508.01.T01:CDS
ACCACCACCGCCGCCACCGG+AGG 0.563360 1:-92672033 None:intergenic
CCACCGGATTGTTTCTCCGT+CGG 0.564902 1:-92671766 None:intergenic
TCAATTTGAAGGATTTGAAG+AGG 0.565283 1:-92672429 None:intergenic
CCGACGGAAACAGCGATGGC+CGG 0.568312 1:-92671843 None:intergenic
CCAGAATCTTTCAACTGACG+AGG 0.568890 1:+92671727 MsG0180005508.01.T01:CDS
CCTGTTGTAAGTAACGGTGT+TGG 0.571104 1:+92672086 MsG0180005508.01.T01:CDS
TCAAACGATGACAGTGGCGG+CGG 0.571801 1:+92671626 MsG0180005508.01.T01:CDS
GCAGGCTCCGTTGTCTCCGA+CGG 0.573037 1:-92671540 None:intergenic
TCTTCACCGTCCGGTCTCGC+CGG 0.573077 1:-92671894 None:intergenic
GAAGTTGCTGAACTCAAACT+AGG 0.587727 1:-92672284 None:intergenic
TACCGGCACTGGAACTGTGC+CGG 0.588215 1:+92671824 MsG0180005508.01.T01:CDS
GTATGCTGTTTGAGCAATTG+GGG 0.588581 1:-92672000 None:intergenic
AATCCGACGGAGAAACAATC+CGG 0.589954 1:+92671763 MsG0180005508.01.T01:CDS
GGAGACAACGGAGCCTGCGG+CGG 0.591612 1:+92671545 MsG0180005508.01.T01:CDS
GTCGGAGACAACGGAGCCTG+CGG 0.596750 1:+92671542 MsG0180005508.01.T01:CDS
TTATGGCCTGTTGTAAGTAA+CGG 0.597870 1:+92672080 MsG0180005508.01.T01:CDS
GGTCTCGCCGGAGATGATGT+TGG 0.599874 1:-92671882 None:intergenic
TGACAGTGGCGGCGGCGAAG+AGG 0.607175 1:+92671634 MsG0180005508.01.T01:CDS
GGTGGTGGTGAAAATGGTGG+TGG 0.608962 1:+92672047 MsG0180005508.01.T01:CDS
GACCGTCACACGAAGGTGGA+GGG 0.613473 1:+92671666 MsG0180005508.01.T01:CDS
ACCTCCGACGGAAACAGCGA+TGG 0.615156 1:-92671847 None:intergenic
AGGATGGAAGTGAACCCTAA+CGG 0.615566 1:+92671468 MsG0180005508.01.T01:intron
CGAAGGTGGAGGGACGTGGT+CGG 0.617193 1:+92671676 MsG0180005508.01.T01:CDS
TCATCTCCGGCGAGACCGGA+CGG 0.619808 1:+92671888 MsG0180005508.01.T01:CDS
GGCGGTGGTGGTGAAAATGG+TGG 0.629936 1:+92672044 MsG0180005508.01.T01:CDS
TACGGTGCCACCACCTCCGG+TGG 0.633787 1:+92672020 MsG0180005508.01.T01:CDS
GAAAGACCGTCACACGAAGG+TGG 0.637908 1:+92671662 MsG0180005508.01.T01:CDS
CAATACTGAAGTATCTCCGT+CGG 0.638733 1:+92671524 MsG0180005508.01.T01:CDS
CAGAATCTTTCAACTGACGA+GGG 0.645062 1:+92671728 MsG0180005508.01.T01:CDS
GGTAATGAAAGAAGAGCTAA+CGG 0.657643 1:+92671569 MsG0180005508.01.T01:CDS
GAGCTAGGTCACAAATCCGA+CGG 0.657749 1:+92671750 MsG0180005508.01.T01:CDS
AATCTTCAACGTACCTCCGA+CGG 0.665588 1:-92671859 None:intergenic
GGTTCAAACGATGACAGTGG+CGG 0.668294 1:+92671623 MsG0180005508.01.T01:CDS
CGTCAGTTGAAAGATTCTGG+CGG 0.698563 1:-92671724 None:intergenic
GTCGAAAGACCGTCACACGA+AGG 0.707956 1:+92671659 MsG0180005508.01.T01:CDS
GCCGGTTCAAACGATGACAG+TGG 0.712883 1:+92671620 MsG0180005508.01.T01:CDS
GCAGGAATAGCCCAAAACTG+TGG 0.725268 1:-92672164 None:intergenic
CCGACGGAGAAACAATCCGG+TGG 0.744089 1:+92671766 MsG0180005508.01.T01:CDS
AAAATAGGAGTAAAACCCAG+AGG 0.750845 1:+92671004 MsG0180005508.01.T01:CDS
ATGGAAGTGAACCCTAACGG+CGG 0.769753 1:+92671471 MsG0180005508.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAAAAAATCAATTTTTT+TGG - Chr1:92671338-92671357 None:intergenic 10.0%
!!! AGAAAAAAATCAATTTTTTT+GGG - Chr1:92671337-92671356 None:intergenic 10.0%
!!! TTATACTTTTTATTTTGAAA+TGG + Chr1:92670981-92671000 MsG0180005508.01.T01:CDS 10.0%
!!! ATTTGTTAATTTTTTTAGGA+TGG + Chr1:92671452-92671471 MsG0180005508.01.T01:intron 15.0%
!!! GAAAAAAATCAATTTTTTTG+GGG - Chr1:92671336-92671355 None:intergenic 15.0%
!!! TACTTTTTACATTAGATTAA+TGG - Chr1:92671052-92671071 None:intergenic 15.0%
!!! TTTATTTTGAAATGGAAAAT+AGG + Chr1:92670989-92671008 MsG0180005508.01.T01:CDS 15.0%
!! GATTCATTAAACTTGAATTT+GGG - Chr1:92672142-92672161 None:intergenic 20.0%
!! TGATTCATTAAACTTGAATT+TGG - Chr1:92672143-92672162 None:intergenic 20.0%
!!! TTTACATTAGATTAATGGAT+GGG - Chr1:92671047-92671066 None:intergenic 20.0%
!!! TTTTACATTAGATTAATGGA+TGG - Chr1:92671048-92671067 None:intergenic 20.0%
! AACTTAAAGCTTCAATTTGA+AGG - Chr1:92672443-92672462 None:intergenic 25.0%
! ATTTATTTGCACAGTGAAAT+AGG - Chr1:92671090-92671109 None:intergenic 25.0%
! CTTGTTTGCACATTAAAAAA+TGG - Chr1:92672194-92672213 None:intergenic 25.0%
! TTCAAATACTCAGATGATAA+GGG + Chr1:92672331-92672350 MsG0180005508.01.T01:CDS 25.0%
!!! CTTTTTCGTTTTTTTCATCT+GGG + Chr1:92671387-92671406 MsG0180005508.01.T01:intron 25.0%
!!! GGTTTTGATCATTCTTTAAT+GGG + Chr1:92671408-92671427 MsG0180005508.01.T01:intron 25.0%
!!! TCTTTTTCGTTTTTTTCATC+TGG + Chr1:92671386-92671405 MsG0180005508.01.T01:intron 25.0%
!!! TTCAAATTGAAGCTTTAAGT+TGG + Chr1:92672442-92672461 MsG0180005508.01.T01:exon 25.0%
AAGAAAGAGTTGCAGTTTAT+GGG + Chr1:92672377-92672396 MsG0180005508.01.T01:CDS 30.0%
CAAATAAATACTGATCCTGA+GGG + Chr1:92671101-92671120 MsG0180005508.01.T01:intron 30.0%
CAATTTGAAGGATTTGAAGA+GGG - Chr1:92672431-92672450 None:intergenic 30.0%
CTGTTTACAAAACACAAAGT+AGG + Chr1:92671310-92671329 MsG0180005508.01.T01:intron 30.0%
CTTCAAATACTCAGATGATA+AGG + Chr1:92672330-92672349 MsG0180005508.01.T01:CDS 30.0%
GAAATAACAAACCCTAACAA+TGG - Chr1:92671162-92671181 None:intergenic 30.0%
GAATTTGGGAACATGAAAAA+TGG - Chr1:92672128-92672147 None:intergenic 30.0%
GCAGAAACAAAATCAGAAAT+AGG - Chr1:92672218-92672237 None:intergenic 30.0%
TAAGAAAGAGTTGCAGTTTA+TGG + Chr1:92672376-92672395 MsG0180005508.01.T01:CDS 30.0%
TCAATTTGAAGGATTTGAAG+AGG - Chr1:92672432-92672451 None:intergenic 30.0%
TTCAAATGCTTCATCTACTT+TGG + Chr1:92672259-92672278 MsG0180005508.01.T01:CDS 30.0%
! AAAGTAGATGAAGCATTTGA+AGG - Chr1:92672260-92672279 None:intergenic 30.0%
! GATGATAAGGGATTTTTCTT+TGG + Chr1:92672343-92672362 MsG0180005508.01.T01:CDS 30.0%
!! GGGTTTTGATCATTCTTTAA+TGG + Chr1:92671407-92671426 MsG0180005508.01.T01:intron 30.0%
AAAATAGGAGTAAAACCCAG+AGG + Chr1:92671004-92671023 MsG0180005508.01.T01:CDS 35.0%
ATAACAAACCCTAACAATGG+TGG - Chr1:92671159-92671178 None:intergenic 35.0%
CATCTGAGTATTTGAAGAAG+TGG - Chr1:92672327-92672346 None:intergenic 35.0%
GATCAAGTTTCAATGTGTTC+TGG + Chr1:92671972-92671991 MsG0180005508.01.T01:CDS 35.0%
GCAAATAAATACTGATCCTG+AGG + Chr1:92671100-92671119 MsG0180005508.01.T01:intron 35.0%
GGTAATGAAAGAAGAGCTAA+CGG + Chr1:92671569-92671588 MsG0180005508.01.T01:CDS 35.0%
TTACTTACAACAGGCCATAA+TGG - Chr1:92672080-92672099 None:intergenic 35.0%
TTATGGCCTGTTGTAAGTAA+CGG + Chr1:92672080-92672099 MsG0180005508.01.T01:CDS 35.0%
! AATGAATCAGCCACAGTTTT+GGG + Chr1:92672154-92672173 MsG0180005508.01.T01:CDS 35.0%
! TAATGAATCAGCCACAGTTT+TGG + Chr1:92672153-92672172 MsG0180005508.01.T01:CDS 35.0%
!! ACATTAAAAAATGGTGCTGC+AGG - Chr1:92672185-92672204 None:intergenic 35.0%
CAGAATCTTTCAACTGACGA+GGG + Chr1:92671728-92671747 MsG0180005508.01.T01:CDS 40.0%
CCAATTGCTCAAACAGCATA+CGG + Chr1:92672002-92672021 MsG0180005508.01.T01:CDS 40.0%
CTGTTGTAAGTAACGGTGTT+GGG + Chr1:92672087-92672106 MsG0180005508.01.T01:CDS 40.0%
GAAAGAAGAGCTAACGGAAA+CGG + Chr1:92671575-92671594 MsG0180005508.01.T01:CDS 40.0%
GAAGATTCCAACATCATCTC+CGG + Chr1:92671875-92671894 MsG0180005508.01.T01:CDS 40.0%
GAAGTTGCTGAACTCAAACT+AGG - Chr1:92672287-92672306 None:intergenic 40.0%
GCACAGTGAAATAGGATCAA+CGG - Chr1:92671082-92671101 None:intergenic 40.0%
GGGTTGTTCTTCTGCAAATT+TGG + Chr1:92672397-92672416 MsG0180005508.01.T01:CDS 40.0%
! CAATACTGAAGTATCTCCGT+CGG + Chr1:92671524-92671543 MsG0180005508.01.T01:CDS 40.0%
! CGTATGCTGTTTGAGCAATT+GGG - Chr1:92672004-92672023 None:intergenic 40.0%
! GAAGCATTTGAAGGTTCTTG+TGG - Chr1:92672251-92672270 None:intergenic 40.0%
! GCTCTTCTTCTTCTTTTCAC+CGG - Chr1:92671924-92671943 None:intergenic 40.0%
! GTATGCTGTTTGAGCAATTG+GGG - Chr1:92672003-92672022 None:intergenic 40.0%
! GTGGTGGTTTAGTTCCATTA+TGG + Chr1:92672063-92672082 MsG0180005508.01.T01:CDS 40.0%
! TGACTGTGTTTGAAGCTTTC+AGG - Chr1:92671276-92671295 None:intergenic 40.0%
AATCCGACGGAGAAACAATC+CGG + Chr1:92671763-92671782 MsG0180005508.01.T01:CDS 45.0%
AATCTTCAACGTACCTCCGA+CGG - Chr1:92671862-92671881 None:intergenic 45.0%
ACATATCCGTGTGGAAGAGA+GGG - Chr1:92671128-92671147 None:intergenic 45.0%
AGGATGGAAGTGAACCCTAA+CGG + Chr1:92671468-92671487 MsG0180005508.01.T01:intron 45.0%
AGTGAAATAGGATCAACGGC+TGG - Chr1:92671078-92671097 None:intergenic 45.0%
CCAACACCGTTACTTACAAC+AGG - Chr1:92672089-92672108 None:intergenic 45.0%
CCAGAATCTTTCAACTGACG+AGG + Chr1:92671727-92671746 MsG0180005508.01.T01:CDS 45.0%
CCTCGTCAGTTGAAAGATTC+TGG - Chr1:92671730-92671749 None:intergenic 45.0%
CCTGTTGTAAGTAACGGTGT+TGG + Chr1:92672086-92672105 MsG0180005508.01.T01:CDS 45.0%
CCTTCTATCATCGAAGCTAC+CGG + Chr1:92671807-92671826 MsG0180005508.01.T01:CDS 45.0%
CGTCAGTTGAAAGATTCTGG+CGG - Chr1:92671727-92671746 None:intergenic 45.0%
TCTCTTCCACACGGATATGT+GGG + Chr1:92671128-92671147 MsG0180005508.01.T01:intron 45.0%
! CAGCTTGTTCTAGTAACCAC+CGG - Chr1:92671785-92671804 None:intergenic 45.0%
! CCGTATGCTGTTTGAGCAAT+TGG - Chr1:92672005-92672024 None:intergenic 45.0%
! GGTGTTGGGTCTAATACAAC+AGG + Chr1:92672101-92672120 MsG0180005508.01.T01:CDS 45.0%
! TTTGAACCGGCATCGGAATA+AGG - Chr1:92671611-92671630 None:intergenic 45.0%
!!! TTTTATTTGTTAATTTTTTT+AGG + Chr1:92671448-92671467 MsG0180005508.01.T01:intron 5.0%
AAAACCCAGAGGTAACTGCG+TGG + Chr1:92671015-92671034 MsG0180005508.01.T01:intron 50.0%
AGAAAACATCGCCGCCGTTA+GGG - Chr1:92671485-92671504 None:intergenic 50.0%
AGTATCTCCGTCGGAGACAA+CGG + Chr1:92671533-92671552 MsG0180005508.01.T01:CDS 50.0%
ATGGAAGTGAACCCTAACGG+CGG + Chr1:92671471-92671490 MsG0180005508.01.T01:CDS 50.0%
CACATATCCGTGTGGAAGAG+AGG - Chr1:92671129-92671148 None:intergenic 50.0%
CCGGTAGCTTCGATGATAGA+AGG - Chr1:92671810-92671829 None:intergenic 50.0%
CTCTCTTCCACACGGATATG+TGG + Chr1:92671127-92671146 MsG0180005508.01.T01:intron 50.0%
CTCTTCCACACGGATATGTG+GGG + Chr1:92671129-92671148 MsG0180005508.01.T01:intron 50.0%
GAGCTAGGTCACAAATCCGA+CGG + Chr1:92671750-92671769 MsG0180005508.01.T01:CDS 50.0%
GCAGGAATAGCCCAAAACTG+TGG - Chr1:92672167-92672186 None:intergenic 50.0%
GCCACTGTCATCGTTTGAAC+CGG - Chr1:92671624-92671643 None:intergenic 50.0%
GGTTCAAACGATGACAGTGG+CGG + Chr1:92671623-92671642 MsG0180005508.01.T01:CDS 50.0%
GTCATCGTTTGAACCGGCAT+CGG - Chr1:92671618-92671637 None:intergenic 50.0%
TGGTCGGAGAATCAGGATTC+CGG + Chr1:92671692-92671711 MsG0180005508.01.T01:CDS 50.0%
TTTCAACTGACGAGGGAGCT+AGG + Chr1:92671735-92671754 MsG0180005508.01.T01:CDS 50.0%
!! CAACAGCCTTATTCCGATGC+CGG + Chr1:92671602-92671621 MsG0180005508.01.T01:CDS 50.0%
AACATCATCTCCGGCGAGAC+CGG + Chr1:92671884-92671903 MsG0180005508.01.T01:CDS 55.0%
ATCATCGAAGCTACCGGCAC+TGG + Chr1:92671813-92671832 MsG0180005508.01.T01:CDS 55.0%
CAGAAAACATCGCCGCCGTT+AGG - Chr1:92671486-92671505 None:intergenic 55.0%
GAAAGACCGTCACACGAAGG+TGG + Chr1:92671662-92671681 MsG0180005508.01.T01:CDS 55.0%
GATGCCACGCAGTTACCTCT+GGG - Chr1:92671022-92671041 None:intergenic 55.0%
GGGGCTCTCCACCATTGTTA+GGG + Chr1:92671148-92671167 MsG0180005508.01.T01:intron 55.0%
GTCGAAAGACCGTCACACGA+AGG + Chr1:92671659-92671678 MsG0180005508.01.T01:CDS 55.0%
TCAAACGATGACAGTGGCGG+CGG + Chr1:92671626-92671645 MsG0180005508.01.T01:CDS 55.0%
TGATGCCACGCAGTTACCTC+TGG - Chr1:92671023-92671042 None:intergenic 55.0%
TGGGGCTCTCCACCATTGTT+AGG + Chr1:92671147-92671166 MsG0180005508.01.T01:intron 55.0%
! CCACCGGATTGTTTCTCCGT+CGG - Chr1:92671769-92671788 None:intergenic 55.0%
! GCCGGTTCAAACGATGACAG+TGG + Chr1:92671620-92671639 MsG0180005508.01.T01:CDS 55.0%
! GGTGGTGGTGAAAATGGTGG+TGG + Chr1:92672047-92672066 MsG0180005508.01.T01:CDS 55.0%
ACCGGACGGTGAAGATGCTC+CGG + Chr1:92671902-92671921 MsG0180005508.01.T01:CDS 60.0%
ACCTCCGACGGAAACAGCGA+TGG - Chr1:92671850-92671869 None:intergenic 60.0%
AGACCGTCACACGAAGGTGG+AGG + Chr1:92671665-92671684 MsG0180005508.01.T01:CDS 60.0%
AGGGACGTGGTCGGAGAATC+AGG + Chr1:92671685-92671704 MsG0180005508.01.T01:CDS 60.0%
CCGACGGAGAAACAATCCGG+TGG + Chr1:92671766-92671785 MsG0180005508.01.T01:CDS 60.0%
GACCGTCACACGAAGGTGGA+GGG + Chr1:92671666-92671685 MsG0180005508.01.T01:CDS 60.0%
GAGAGCCCCACATATCCGTG+TGG - Chr1:92671137-92671156 None:intergenic 60.0%
GAGGGACCCTCTCTTCCACA+CGG + Chr1:92671119-92671138 MsG0180005508.01.T01:intron 60.0%
GGTCTCGCCGGAGATGATGT+TGG - Chr1:92671885-92671904 None:intergenic 60.0%
GTCCCTCCACCTTCGTGTGA+CGG - Chr1:92671671-92671690 None:intergenic 60.0%
TCTTTCATTACCGCCGCCGC+AGG - Chr1:92671561-92671580 None:intergenic 60.0%
TGTGGAAGAGAGGGTCCCTC+AGG - Chr1:92671119-92671138 None:intergenic 60.0%
! ACCGGAGCATCTTCACCGTC+CGG - Chr1:92671906-92671925 None:intergenic 60.0%
! GGCGGTGGTGGTGAAAATGG+TGG + Chr1:92672044-92672063 MsG0180005508.01.T01:CDS 60.0%
! TACCGGCACTGGAACTGTGC+CGG + Chr1:92671824-92671843 MsG0180005508.01.T01:CDS 60.0%
ATTCTGGCGGCGCATGTCGC+CGG - Chr1:92671714-92671733 None:intergenic 65.0%
CACACGAAGGTGGAGGGACG+TGG + Chr1:92671672-92671691 MsG0180005508.01.T01:CDS 65.0%
CCGACGGAAACAGCGATGGC+CGG - Chr1:92671846-92671865 None:intergenic 65.0%
CGAAGGTGGAGGGACGTGGT+CGG + Chr1:92671676-92671695 MsG0180005508.01.T01:CDS 65.0%
GCAGGCTCCGTTGTCTCCGA+CGG - Chr1:92671543-92671562 None:intergenic 65.0%
GTCGGAGACAACGGAGCCTG+CGG + Chr1:92671542-92671561 MsG0180005508.01.T01:CDS 65.0%
TCATCTCCGGCGAGACCGGA+CGG + Chr1:92671888-92671907 MsG0180005508.01.T01:CDS 65.0%
TCTTCACCGTCCGGTCTCGC+CGG - Chr1:92671897-92671916 None:intergenic 65.0%
! CCGGCCATCGCTGTTTCCGT+CGG + Chr1:92671843-92671862 MsG0180005508.01.T01:CDS 65.0%
! GCCATCGCTGTTTCCGTCGG+AGG + Chr1:92671846-92671865 MsG0180005508.01.T01:CDS 65.0%
! GGCGGCGGTGGTGGTGAAAA+TGG + Chr1:92672041-92672060 MsG0180005508.01.T01:CDS 65.0%
!! GCATACGGTGCCACCACCTC+CGG + Chr1:92672017-92672036 MsG0180005508.01.T01:CDS 65.0%
GGAGACAACGGAGCCTGCGG+CGG + Chr1:92671545-92671564 MsG0180005508.01.T01:CDS 70.0%
GGCCGGCACAGTTCCAGTGC+CGG - Chr1:92671829-92671848 None:intergenic 70.0%
TGACAGTGGCGGCGGCGAAG+AGG + Chr1:92671634-92671653 MsG0180005508.01.T01:CDS 70.0%
TTCACCACCACCGCCGCCAC+CGG - Chr1:92672039-92672058 None:intergenic 70.0%
!! TACGGTGCCACCACCTCCGG+TGG + Chr1:92672020-92672039 MsG0180005508.01.T01:CDS 70.0%
GACAACGGAGCCTGCGGCGG+CGG + Chr1:92671548-92671567 MsG0180005508.01.T01:CDS 75.0%
! GGTGCCACCACCTCCGGTGG+CGG + Chr1:92672023-92672042 MsG0180005508.01.T01:CDS 75.0%
! ACCACCACCGCCGCCACCGG+AGG - Chr1:92672036-92672055 None:intergenic 80.0%
! ACCACCGCCGCCACCGGAGG+TGG - Chr1:92672033-92672052 None:intergenic 80.0%
! ACCGCCGCCACCGGAGGTGG+TGG - Chr1:92672030-92672049 None:intergenic 80.0%
!! ACCACCTCCGGTGGCGGCGG+TGG + Chr1:92672029-92672048 MsG0180005508.01.T01:CDS 80.0%
!! ACCTCCGGTGGCGGCGGTGG+TGG + Chr1:92672032-92672051 MsG0180005508.01.T01:CDS 80.0%
!! GCCACCACCTCCGGTGGCGG+CGG + Chr1:92672026-92672045 MsG0180005508.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 92670976 92672519 92670976 ID=MsG0180005508.01;Name=MsG0180005508.01
Chr1 mRNA 92670976 92672519 92670976 ID=MsG0180005508.01.T01;Parent=MsG0180005508.01;Name=MsG0180005508.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0|0.5|1|1|1|2|68|343
Chr1 exon 92670976 92671025 92670976 ID=MsG0180005508.01.T01:exon:9926;Parent=MsG0180005508.01.T01
Chr1 exon 92671470 92672519 92671470 ID=MsG0180005508.01.T01:exon:9927;Parent=MsG0180005508.01.T01
Chr1 CDS 92670976 92671025 92670976 ID=MsG0180005508.01.T01:cds;Parent=MsG0180005508.01.T01
Chr1 CDS 92671470 92672451 92671470 ID=MsG0180005508.01.T01:cds;Parent=MsG0180005508.01.T01
Chr1 three_prime_UTR 92672452 92672519 92672452 ID=MsG0180005508.01.T01:three_prime_utr;Parent=MsG0180005508.01.T01
Gene Sequence

>MsG0180005508.01.T01

ATGAATTATACTTTTTATTTTGAAATGGAAAATAGGAGTAAAACCCAGAGGATGGAAGTGAACCCTAACGGCGGCGATGTTTTCTGTGAAGAAAACAACACTGACAATACTGAAGTATCTCCGTCGGAGACAACGGAGCCTGCGGCGGCGGTAATGAAAGAAGAGCTAACGGAAACGGAAAACAACAGCCTTATTCCGATGCCGGTTCAAACGATGACAGTGGCGGCGGCGAAGAGGTCGTCGAAAGACCGTCACACGAAGGTGGAGGGACGTGGTCGGAGAATCAGGATTCCGGCGACATGCGCCGCCAGAATCTTTCAACTGACGAGGGAGCTAGGTCACAAATCCGACGGAGAAACAATCCGGTGGTTACTAGAACAAGCTGAACCTTCTATCATCGAAGCTACCGGCACTGGAACTGTGCCGGCCATCGCTGTTTCCGTCGGAGGTACGTTGAAGATTCCAACATCATCTCCGGCGAGACCGGACGGTGAAGATGCTCCGGTGAAAAGAAGAAGAAGAGCTTCAAACAGTGAGTTTGTTGACTTGAATGATCAAGTTTCAATGTGTTCTGGATTAGCCCCAATTGCTCAAACAGCATACGGTGCCACCACCTCCGGTGGCGGCGGTGGTGGTGAAAATGGTGGTGGTTTAGTTCCATTATGGCCTGTTGTAAGTAACGGTGTTGGGTCTAATACAACAGGACCATTTTTCATGTTCCCAAATTCAAGTTTAATGAATCAGCCACAGTTTTGGGCTATTCCTGCAGCACCATTTTTTAATGTGCAAACAAGACCTATTTCTGATTTTGTTTCTGCTATGCAAATGCCACAAGAACCTTCAAATGCTTCATCTACTTTGGCTCCTAGTTTGAGTTCAGCAACTTCAACTAGTTGTTCTGCTACCACTTCTTCAAATACTCAGATGATAAGGGATTTTTCTTTGGATATCTTTGATAAGAAAGAGTTGCAGTTTATGGGTTGTTCTTCTGCAAATTTGGAATCATCTCCCTCTTCAAATCCTTCAAATTGA
Protein sequence

>MsG0180005508.01.T01

MNYTFYFEMENRSKTQRMEVNPNGGDVFCEENNTDNTEVSPSETTEPAAAVMKEELTETENNSLIPMPVQTMTVAAAKRSSKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEQAEPSIIEATGTGTVPAIAVSVGGTLKIPTSSPARPDGEDAPVKRRRRASNSEFVDLNDQVSMCSGLAPIAQTAYGATTSGGGGGGENGGGLVPLWPVVSNGVGSNTTGPFFMFPNSSLMNQPQFWAIPAAPFFNVQTRPISDFVSAMQMPQEPSNASSTLAPSLSSATSTSCSATTSSNTQMIRDFSLDIFDKKELQFMGCSSANLESSPSSNPSN*