AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005900.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005900.01.T01 MTR_7g083950 58.575 449 155 14 1 436 2 432 8.71e-160 458
MsG0180005900.01.T01 MTR_3g045700 65.084 358 107 10 86 436 4 350 3.81e-143 412
MsG0180005900.01.T01 MTR_3g006010 50.000 454 176 9 21 433 23 466 1.06e-132 390
MsG0180005900.01.T01 MTR_1g100280 56.676 367 111 11 81 436 8 337 5.00e-118 348
MsG0180005900.01.T01 MTR_4g133490 55.899 356 143 8 86 436 2 348 1.43e-117 347
MsG0180005900.01.T01 MTR_6g091830 45.695 453 202 12 15 436 16 455 1.59e-113 341
MsG0180005900.01.T01 MTR_6g092140 45.475 453 203 12 15 436 16 455 6.24e-113 339
MsG0180005900.01.T01 MTR_3g006120 52.941 357 150 7 85 433 3 349 9.78e-113 335
MsG0180005900.01.T01 MTR_3g006100 52.222 360 154 7 85 436 3 352 1.01e-112 335
MsG0180005900.01.T01 MTR_3g006140 51.240 363 163 6 79 435 19 373 4.43e-110 329
MsG0180005900.01.T01 MTR_3g006180 52.011 348 149 7 96 435 1 338 1.64e-105 316
MsG0180005900.01.T01 MTR_7g070100 52.078 361 154 8 83 436 2 350 3.67e-103 311
MsG0180005900.01.T01 MTR_3g068220 48.626 364 160 9 86 434 4 355 2.84e-95 291
MsG0180005900.01.T01 MTR_1g109340 60.938 256 88 5 185 435 106 354 3.78e-95 290
MsG0180005900.01.T01 MTR_1g109340 52.033 123 39 4 1 121 2 106 8.75e-28 113
MsG0180005900.01.T01 MTR_4g133320 53.165 316 136 7 125 436 1 308 4.75e-93 283
MsG0180005900.01.T01 MTR_1g109090 87.500 144 17 1 77 219 7 150 2.73e-87 263
MsG0180005900.01.T01 MTR_6g088340 38.950 457 199 13 15 436 22 433 1.50e-80 255
MsG0180005900.01.T01 MTR_3g085910 42.598 331 123 6 84 403 1 275 1.17e-72 230
MsG0180005900.01.T01 MTR_6g011110 46.643 283 127 6 168 436 5 277 7.36e-66 212
MsG0180005900.01.T01 MTR_3g086480 48.669 263 119 6 171 428 2 253 2.94e-64 207
MsG0180005900.01.T01 MTR_1g109520 57.669 163 53 4 282 435 21 176 6.93e-52 172
MsG0180005900.01.T01 MTR_1g089085 60.811 148 51 4 80 225 33 175 2.06e-44 153
MsG0180005900.01.T01 MTR_1g089620 65.289 121 34 2 263 383 36 148 8.62e-42 150
MsG0180005900.01.T01 MTR_1g012330 63.415 123 45 0 166 288 3 125 2.21e-41 147
MsG0180005900.01.T01 MTR_1g106050 67.347 98 30 2 86 182 2 98 5.67e-35 127
MsG0180005900.01.T01 MTR_6g023220 27.457 346 233 9 91 432 18 349 4.37e-27 111
MsG0180005900.01.T01 MTR_1g093300 49.231 130 57 3 258 384 1 124 6.91e-26 102
MsG0180005900.01.T01 MTR_6g091850 48.544 103 40 4 345 436 1 101 3.81e-22 90.9
MsG0180005900.01.T01 MTR_0128s0040 37.778 135 80 4 115 248 3 134 8.26e-16 74.3
MsG0180005900.01.T01 MTR_5g036670 47.619 84 35 2 4 78 31 114 1.05e-12 70.9
MsG0180005900.01.T01 MTR_1g105960 45.946 74 40 0 15 88 9 82 3.79e-12 63.2
MsG0180005900.01.T01 MTR_1g105955 50.769 65 32 0 10 74 98 162 1.06e-11 63.9
MsG0180005900.01.T01 MTR_1g105010 43.836 73 41 0 10 82 19 91 1.14e-11 62.0
MsG0180005900.01.T01 MTR_4g133300 52.941 68 32 0 9 76 174 241 1.27e-11 65.1
MsG0180005900.01.T01 MTR_4g133470 52.941 68 32 0 9 76 174 241 1.32e-11 65.1
MsG0180005900.01.T01 MTR_8g062700 38.053 113 53 3 8 118 41 138 2.63e-11 66.6
MsG0180005900.01.T01 MTR_8g062700 36.283 113 55 2 8 118 41 138 2.77e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005900.01.T01 AT1G24190 51.389 72 33 1 8 77 13 84 4.75e-13 72.0
MsG0180005900.01.T01 AT1G24190 51.389 72 33 1 8 77 13 84 4.78e-13 72.0
MsG0180005900.01.T01 AT1G24190 51.389 72 33 1 8 77 13 84 5.28e-13 72.0
MsG0180005900.01.T01 AT5G15020 45.349 86 42 2 8 88 51 136 2.03e-11 67.0
MsG0180005900.01.T01 AT5G15020 45.349 86 42 2 8 88 51 136 2.09e-11 66.6
MsG0180005900.01.T01 AT1G70060 52.857 70 31 1 9 76 14 83 2.15e-11 66.6
MsG0180005900.01.T01 AT1G70060 52.857 70 31 1 9 76 14 83 2.15e-11 66.6
MsG0180005900.01.T01 AT3G01320 37.190 121 57 4 8 126 56 159 6.57e-11 65.1
MsG0180005900.01.T01 AT3G01320 37.190 121 57 4 8 126 56 159 6.62e-11 65.1

Find 79 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGCATACTGATTTAATTT+TGG 0.112441 1:+97275394 MsG0180005900.01.T01:CDS
ACCTTCTTTATTCTTGTAAA+TGG 0.131332 1:-97279915 None:intergenic
CTCTCATATCCCCACTTATT+CGG 0.195575 1:-97280446 None:intergenic
TAAGAAACTTGAAGAATTAA+TGG 0.210838 1:-97279738 None:intergenic
CTCTGAGGAATTTGTCTTGA+TGG 0.261294 1:+97280010 MsG0180005900.01.T01:CDS
ATGAAATACCCTCAACCTTT+AGG 0.276024 1:+97280240 MsG0180005900.01.T01:CDS
CTCTGAAATCAAGCCTTATA+TGG 0.300310 1:+97279953 MsG0180005900.01.T01:CDS
AGAGTCAAGCAGCTGCTTAA+AGG 0.323406 1:+97275374 MsG0180005900.01.T01:CDS
GCAAAATGTAGTGTGTATTC+CGG 0.338701 1:+97280503 MsG0180005900.01.T01:CDS
TAAACATAGATGAGTGCTTC+TGG 0.348959 1:+97279817 MsG0180005900.01.T01:CDS
AAAGGTTGAGGGTATTTCAT+TGG 0.363083 1:-97280237 None:intergenic
TCTCATATCCCCACTTATTC+GGG 0.366790 1:-97280445 None:intergenic
TAAGGGATGTGTACAGGATA+AGG 0.368086 1:+97280315 MsG0180005900.01.T01:CDS
CATATTCCTACACGTTTGAT+TGG 0.378889 1:+97280573 MsG0180005900.01.T01:CDS
CAAAATGTAGTGTGTATTCC+GGG 0.390668 1:+97280504 MsG0180005900.01.T01:CDS
TTATGTCAAACTGGAAACTT+TGG 0.395167 1:+97280370 MsG0180005900.01.T01:CDS
AACCATGAGTTATGTCAAAC+TGG 0.399495 1:+97280361 MsG0180005900.01.T01:CDS
AGTTTGATTTGATGTTCCTT+TGG 0.399942 1:-97275434 None:intergenic
AGTCATCAAAATCTAATGTT+TGG 0.409906 1:-97279635 None:intergenic
GTTGTGATCTAAAGGGAAAA+AGG 0.417556 1:+97279557 MsG0180005900.01.T01:intron
GAGTCAAGCAGCTGCTTAAA+GGG 0.418662 1:+97275375 MsG0180005900.01.T01:CDS
TTGGTCGGGTATGCTGATAA+AGG 0.422181 1:-97279778 None:intergenic
AAGGTTGAGGGTATTTCATT+GGG 0.422234 1:-97280236 None:intergenic
ATATGGATCTTAACCGTGCT+TGG 0.424144 1:+97279970 MsG0180005900.01.T01:CDS
GCACGGTTAAGATCCATATA+AGG 0.426694 1:-97279966 None:intergenic
TTGCCGGTGTGTGCAAGAAT+TGG 0.432034 1:+97279667 MsG0180005900.01.T01:CDS
TGCATTATGCTTCCAGCTCA+TGG 0.442339 1:+97280548 MsG0180005900.01.T01:CDS
TGATTTGATGTTCCTTTGGC+AGG 0.443659 1:-97275430 None:intergenic
TGGGTTACTTATTCGACAAT+GGG 0.449270 1:+97280086 MsG0180005900.01.T01:CDS
AATATCCAAGTCACTCAACT+AGG 0.457567 1:-97280631 None:intergenic
ATTACAATTAACCAACCTAA+AGG 0.459909 1:-97280255 None:intergenic
TTGGCAGCGATTGTACAAGC+TGG 0.463810 1:+97275260 MsG0180005900.01.T01:CDS
AAGCTGGGTTTCAAGATAAG+AGG 0.471098 1:+97275276 MsG0180005900.01.T01:CDS
AAGGGATGTGTACAGGATAA+GGG 0.471486 1:+97280316 MsG0180005900.01.T01:CDS
AATATATGTTGTCACTTTCG+AGG 0.471894 1:+97280151 MsG0180005900.01.T01:CDS
ATCAATCTCGAAATTGTGGT+TGG 0.483573 1:+97280066 MsG0180005900.01.T01:CDS
TATGTCAAACTGGAAACTTT+GGG 0.486945 1:+97280371 MsG0180005900.01.T01:CDS
ATAAAATAAGGGATGTGTAC+AGG 0.487509 1:+97280309 MsG0180005900.01.T01:CDS
TAGGAATATGCTCCATGAGC+TGG 0.492289 1:-97280560 None:intergenic
GTCACTTTCGAGGGCAACAT+AGG 0.493506 1:+97280161 MsG0180005900.01.T01:CDS
TCCATTTACAAGAATAAAGA+AGG 0.500617 1:+97279914 MsG0180005900.01.T01:CDS
TCAATCTCGAAATTGTGGTT+GGG 0.502080 1:+97280067 MsG0180005900.01.T01:CDS
TGATAGACATGCAAGATCTC+AGG 0.503913 1:-97280047 None:intergenic
TGGCAGCGATTGTACAAGCT+GGG 0.511829 1:+97275261 MsG0180005900.01.T01:CDS
AGCTGGGTTTCAAGATAAGA+GGG 0.518029 1:+97275277 MsG0180005900.01.T01:CDS
CATTGAGCAACCCGAATAAG+TGG 0.521050 1:+97280435 MsG0180005900.01.T01:CDS
GTCTATCAATCTCGAAATTG+TGG 0.522717 1:+97280062 MsG0180005900.01.T01:CDS
ATTAACCAACCTAAAGGTTG+AGG 0.523383 1:-97280249 None:intergenic
TCACTTTCGAGGGCAACATA+GGG 0.529869 1:+97280162 MsG0180005900.01.T01:CDS
AATACCCTCAACCTTTAGGT+TGG 0.533454 1:+97280244 MsG0180005900.01.T01:CDS
AATGATATCAAGCACATCAC+AGG 0.534113 1:-97279610 None:intergenic
CCGGTGTGTGCAAGAATTGG+AGG 0.534247 1:+97279670 MsG0180005900.01.T01:CDS
TTCCAGTTTGACATAACTCA+TGG 0.536068 1:-97280363 None:intergenic
ATATATGTTGTCACTTTCGA+GGG 0.539644 1:+97280152 MsG0180005900.01.T01:CDS
AAAACTCCTAAAAGATGTCA+AGG 0.541090 1:+97275319 MsG0180005900.01.T01:CDS
CATATAAGGCTTGATTTCAG+AGG 0.542743 1:-97279952 None:intergenic
TTGATGTTCCTTTGGCAGGA+AGG 0.546048 1:-97275426 None:intergenic
TTGGGTTACTTATTCGACAA+TGG 0.547533 1:+97280085 MsG0180005900.01.T01:CDS
ATATCCAAGTCACTCAACTA+GGG 0.561752 1:-97280630 None:intergenic
ACCTATGTTACGTCTTCTAA+CGG 0.564873 1:+97279846 MsG0180005900.01.T01:CDS
TTAACCAACCTAAAGGTTGA+GGG 0.566777 1:-97280248 None:intergenic
CAAATCAAACTTGAGACCAC+TGG 0.570634 1:+97275446 MsG0180005900.01.T01:CDS
ATATAAGGCTTGATTTCAGA+GGG 0.576887 1:-97279951 None:intergenic
GCACATCACAGGGAAGTTCA+CGG 0.580584 1:-97279599 None:intergenic
AATTTATACAAGACGTTCTG+CGG 0.581560 1:+97275349 MsG0180005900.01.T01:CDS
AGTAAGAGTTGTTGACGCTG+TGG 0.603128 1:+97280115 MsG0180005900.01.T01:CDS
ATTCAACACCTTCCTGCCAA+AGG 0.618562 1:+97275418 MsG0180005900.01.T01:CDS
CACTTTCGAGGGCAACATAG+GGG 0.620239 1:+97280163 MsG0180005900.01.T01:CDS
ATTGAGCAACCCGAATAAGT+GGG 0.621690 1:+97280436 MsG0180005900.01.T01:CDS
CGGTGTGTGCAAGAATTGGA+GGG 0.623193 1:+97279671 MsG0180005900.01.T01:CDS
TGTCAAAAGCAAGCCAAGCA+CGG 0.623330 1:-97279983 None:intergenic
TCCGTTAGAAGACGTAACAT+AGG 0.634163 1:-97279847 None:intergenic
AAAACACCAATCAAACGTGT+AGG 0.635770 1:-97280579 None:intergenic
ATGATATCAAGCACATCACA+GGG 0.647975 1:-97279609 None:intergenic
CCTCCAATTCTTGCACACAC+CGG 0.651110 1:-97279670 None:intergenic
TTGAGCAACCCGAATAAGTG+GGG 0.684144 1:+97280437 MsG0180005900.01.T01:CDS
GCTGGGTTTCAAGATAAGAG+GGG 0.722942 1:+97275278 MsG0180005900.01.T01:CDS
TCGCTGCCAACGCATCATCG+CGG 0.747815 1:-97275247 None:intergenic
AAAATGTAGTGTGTATTCCG+GGG 0.780507 1:+97280505 MsG0180005900.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAACTTAGTAAAATA+TGG - Chr1:97276917-97276936 None:intergenic 10.0%
!! CTATATAAATAAATAAATAG+GGG - Chr1:97276968-97276987 None:intergenic 10.0%
!! GCTATATAAATAAATAAATA+GGG - Chr1:97276969-97276988 None:intergenic 10.0%
!! TATATAAATAAATAAATAGG+GGG - Chr1:97276967-97276986 None:intergenic 10.0%
!! TTCATAGATTAAAAAAAAAA+GGG + Chr1:97279137-97279156 MsG0180005900.01.T01:intron 10.0%
!!! TATTTTCTGTTAAAAAAAAT+TGG - Chr1:97276628-97276647 None:intergenic 10.0%
!! AAATACAACATAGATATTTA+TGG - Chr1:97275864-97275883 None:intergenic 15.0%
!! AATACAACATAGATATTTAT+GGG - Chr1:97275863-97275882 None:intergenic 15.0%
!! AATTAGATATTAGATATACA+TGG + Chr1:97277865-97277884 MsG0180005900.01.T01:intron 15.0%
!! AGTTCAATTATATTATGTTA+TGG + Chr1:97275717-97275736 MsG0180005900.01.T01:intron 15.0%
!! ATATAAATAAATAAATAGGG+GGG - Chr1:97276966-97276985 None:intergenic 15.0%
!! CGCTATATAAATAAATAAAT+AGG - Chr1:97276970-97276989 None:intergenic 15.0%
!! CTTCATAGATTAAAAAAAAA+AGG + Chr1:97279136-97279155 MsG0180005900.01.T01:intron 15.0%
!! GCTATATATATATAATTCTA+TGG + Chr1:97275540-97275559 MsG0180005900.01.T01:intron 15.0%
!! TAAAAAAAATTGGATAACTA+AGG - Chr1:97276618-97276637 None:intergenic 15.0%
!! TGTTTCAGAAATAAATAAAA+AGG + Chr1:97279502-97279521 MsG0180005900.01.T01:intron 15.0%
!! TTATAGAATCAATTAATGTT+TGG - Chr1:97277439-97277458 None:intergenic 15.0%
!! TTTATTTATTTATATAGCGA+AGG + Chr1:97276971-97276990 MsG0180005900.01.T01:intron 15.0%
!!! ATACATTTTTTATATCTGAA+TGG + Chr1:97277474-97277493 MsG0180005900.01.T01:intron 15.0%
!!! ATTTTAGGTACAATAAAATA+AGG + Chr1:97280297-97280316 MsG0180005900.01.T01:CDS 15.0%
!!! TTTTAGGTACAATAAAATAA+GGG + Chr1:97280298-97280317 MsG0180005900.01.T01:CDS 15.0%
!!! TTTTCATTTTTCTTTTTGTT+GGG + Chr1:97279239-97279258 MsG0180005900.01.T01:intron 15.0%
!!! TTTTTGCTCTTAAAAAAATT+TGG - Chr1:97276457-97276476 None:intergenic 15.0%
!!! TTTTTTAACAGAAAATAGAA+GGG + Chr1:97276631-97276650 MsG0180005900.01.T01:intron 15.0%
!!! TTTTTTTAACAGAAAATAGA+AGG + Chr1:97276630-97276649 MsG0180005900.01.T01:intron 15.0%
!! AAACACAATTACAATTTAGT+TGG - Chr1:97277897-97277916 None:intergenic 20.0%
!! ACTGAGAAAATAAATCTTAA+TGG + Chr1:97277951-97277970 MsG0180005900.01.T01:intron 20.0%
!! AGAAATTTACACAACAATTT+CGG - Chr1:97276893-97276912 None:intergenic 20.0%
!! ATCGTCAATATAAAGATTAT+AGG + Chr1:97278238-97278257 MsG0180005900.01.T01:intron 20.0%
!! CAACAAAAAGAAAAATGAAA+AGG - Chr1:97279240-97279259 None:intergenic 20.0%
!! TAAGAAACTTGAAGAATTAA+TGG - Chr1:97279741-97279760 None:intergenic 20.0%
!! TACTAATAAAACTGAAGAAT+TGG - Chr1:97278893-97278912 None:intergenic 20.0%
!! TATAAATAAATAAATAGGGG+GGG - Chr1:97276965-97276984 None:intergenic 20.0%
!! TCGTCAATATAAAGATTATA+GGG + Chr1:97278239-97278258 MsG0180005900.01.T01:intron 20.0%
!!! AAAATGTATGTTTCTATGTA+TGG - Chr1:97277463-97277482 None:intergenic 20.0%
!!! AAATGTATGTTTCTATGTAT+GGG - Chr1:97277462-97277481 None:intergenic 20.0%
!!! AATTTTTTATAGGGTTAAAG+AGG - Chr1:97277324-97277343 None:intergenic 20.0%
!!! ATTTTTTATATCTGAATGGA+TGG + Chr1:97277478-97277497 MsG0180005900.01.T01:intron 20.0%
!!! CTTTTCATTTTTCTTTTTGT+TGG + Chr1:97279238-97279257 MsG0180005900.01.T01:intron 20.0%
!!! TGGGAAAATTTTATTACTAT+AGG - Chr1:97276148-97276167 None:intergenic 20.0%
!!! TTAAGCGATAATTAACTTTT+TGG - Chr1:97279800-97279819 None:intergenic 20.0%
!!! TTATAAGCATTTTCATAATC+AGG + Chr1:97277800-97277819 MsG0180005900.01.T01:intron 20.0%
!!! TTTCATTTTTCTTTTTGTTG+GGG + Chr1:97279240-97279259 MsG0180005900.01.T01:intron 20.0%
! AAAACATAAGCTATAAGTCA+TGG + Chr1:97278007-97278026 MsG0180005900.01.T01:intron 25.0%
! AAACATATATTAATGAGCCA+AGG - Chr1:97277220-97277239 None:intergenic 25.0%
! AATAACCTACAATGTGATAA+AGG - Chr1:97275912-97275931 None:intergenic 25.0%
! AATGATAAATTACTAACCAG+TGG - Chr1:97275465-97275484 None:intergenic 25.0%
! ACAACATTAATGAGACATAA+TGG + Chr1:97278625-97278644 MsG0180005900.01.T01:intron 25.0%
! ACCCTATAAAAAATTGTGTT+TGG + Chr1:97277329-97277348 MsG0180005900.01.T01:intron 25.0%
! ACCTTCTTTATTCTTGTAAA+TGG - Chr1:97279918-97279937 None:intergenic 25.0%
! AGTCATCAAAATCTAATGTT+TGG - Chr1:97279638-97279657 None:intergenic 25.0%
! ATAGTATCTCAATACAATGA+AGG + Chr1:97275832-97275851 MsG0180005900.01.T01:intron 25.0%
! ATTAATGTGATAAGCCAATA+AGG + Chr1:97277602-97277621 MsG0180005900.01.T01:intron 25.0%
! ATTACAATTAACCAACCTAA+AGG - Chr1:97280258-97280277 None:intergenic 25.0%
! GGAAATTAGTATAGCAATTA+GGG + Chr1:97278785-97278804 MsG0180005900.01.T01:intron 25.0%
! GTACAATCATACTAAATGTT+TGG + Chr1:97275799-97275818 MsG0180005900.01.T01:intron 25.0%
! TAATATATGTTTACTCCCAA+TGG + Chr1:97277228-97277247 MsG0180005900.01.T01:intron 25.0%
! TAGTATCTCAATACAATGAA+GGG + Chr1:97275833-97275852 MsG0180005900.01.T01:intron 25.0%
! TCATAAAGATTGTCTCATTA+GGG + Chr1:97276791-97276810 MsG0180005900.01.T01:intron 25.0%
! TCCATCAGTTAATTACTAAT+GGG - Chr1:97276167-97276186 None:intergenic 25.0%
! TCCATTTACAAGAATAAAGA+AGG + Chr1:97279914-97279933 MsG0180005900.01.T01:CDS 25.0%
! TGATAAATCGTTACAAAACT+TGG + Chr1:97278318-97278337 MsG0180005900.01.T01:intron 25.0%
! TTCATAAAGATTGTCTCATT+AGG + Chr1:97276790-97276809 MsG0180005900.01.T01:intron 25.0%
! TTCCATCAGTTAATTACTAA+TGG - Chr1:97276168-97276187 None:intergenic 25.0%
!! AATCTTTATGAACATGCTTT+TGG - Chr1:97276782-97276801 None:intergenic 25.0%
!! ACTTACTCTAAAAGCTAATT+AGG - Chr1:97278827-97278846 None:intergenic 25.0%
!! TTTGTCTTTGATAGCATAAA+TGG + Chr1:97275936-97275955 MsG0180005900.01.T01:intron 25.0%
!! TTTTAGACATCAACAATATG+AGG + Chr1:97280598-97280617 MsG0180005900.01.T01:CDS 25.0%
!!! AACAACCTTATTTGCTATAT+CGG + Chr1:97276070-97276089 MsG0180005900.01.T01:intron 25.0%
!!! AGCCAAACACAATTTTTTAT+AGG - Chr1:97277334-97277353 None:intergenic 25.0%
!!! ATCTATTGTTTGCTATACAT+TGG + Chr1:97279362-97279381 MsG0180005900.01.T01:intron 25.0%
!!! CTATTTTTATATCAAACCCT+TGG - Chr1:97276100-97276119 None:intergenic 25.0%
!!! GCCAAACACAATTTTTTATA+GGG - Chr1:97277333-97277352 None:intergenic 25.0%
!!! TAGAAGCATTGATTAAACTT+AGG - Chr1:97276234-97276253 None:intergenic 25.0%
!!! TATGGGTTATTTTAAAACGA+TGG - Chr1:97279055-97279074 None:intergenic 25.0%
!!! TTCTAACGGATATTTTATCT+CGG + Chr1:97279860-97279879 MsG0180005900.01.T01:CDS 25.0%
!!! TTGGTTTTCCAATTTTAGAT+AGG - Chr1:97277191-97277210 None:intergenic 25.0%
!!! TTGTTTTTTGAGAAGTCTTA+TGG + Chr1:97278984-97279003 MsG0180005900.01.T01:intron 25.0%
!!! TTTCAATTTTTTATCATCCC+CGG - Chr1:97280525-97280544 None:intergenic 25.0%
AAAACTCCTAAAAGATGTCA+AGG + Chr1:97275319-97275338 MsG0180005900.01.T01:CDS 30.0%
AAACGCATGAACATATACAT+TGG + Chr1:97277372-97277391 MsG0180005900.01.T01:intron 30.0%
AATGAGACATAATGGCTTAT+TGG + Chr1:97278633-97278652 MsG0180005900.01.T01:intron 30.0%
AATTTATACAAGACGTTCTG+CGG + Chr1:97275349-97275368 MsG0180005900.01.T01:CDS 30.0%
AGTAGAGTGTAATCATTGAA+GGG - Chr1:97275982-97276001 None:intergenic 30.0%
ATAAAATAAGGGATGTGTAC+AGG + Chr1:97280309-97280328 MsG0180005900.01.T01:CDS 30.0%
ATATAAGGCTTGATTTCAGA+GGG - Chr1:97279954-97279973 None:intergenic 30.0%
ATATACATTGGAGAGTTTGT+TGG + Chr1:97277384-97277403 MsG0180005900.01.T01:intron 30.0%
ATCACAACAATGACAACATT+AGG - Chr1:97279545-97279564 None:intergenic 30.0%
CACATAAGCAAATAGAATGA+AGG + Chr1:97278459-97278478 MsG0180005900.01.T01:intron 30.0%
CATCATACATTTGCTCTATA+AGG + Chr1:97278071-97278090 MsG0180005900.01.T01:intron 30.0%
CTGTACAACAACTAATGTAT+AGG - Chr1:97277127-97277146 None:intergenic 30.0%
CTTAGCTTAAAACATTTCGA+TGG - Chr1:97276575-97276594 None:intergenic 30.0%
GAAGTGTAGTTGTAACTTAT+GGG - Chr1:97279072-97279091 None:intergenic 30.0%
GATGCATTTAGTTAAGTAGT+TGG + Chr1:97278574-97278593 MsG0180005900.01.T01:intron 30.0%
GGGAAATTAGTATAGCAATT+AGG + Chr1:97278784-97278803 MsG0180005900.01.T01:intron 30.0%
TAACAACCATATTTACTAGC+TGG - Chr1:97276039-97276058 None:intergenic 30.0%
TAAGACCTTTATCACATTGT+AGG + Chr1:97275904-97275923 MsG0180005900.01.T01:intron 30.0%
TACATTGGCATGAAAAAAAG+AGG + Chr1:97279377-97279396 MsG0180005900.01.T01:intron 30.0%
TAGTAGAGTGTAATCATTGA+AGG - Chr1:97275983-97276002 None:intergenic 30.0%
TATGTCAAACTGGAAACTTT+GGG + Chr1:97280371-97280390 MsG0180005900.01.T01:CDS 30.0%
TATGTTATGGTTGTTTGTGA+TGG + Chr1:97275730-97275749 MsG0180005900.01.T01:intron 30.0%
TCCCATTAGTAATTAACTGA+TGG + Chr1:97276163-97276182 MsG0180005900.01.T01:intron 30.0%
TGAAGTGTAGTTGTAACTTA+TGG - Chr1:97279073-97279092 None:intergenic 30.0%
TGTCATTGTTGTGATCTAAA+GGG + Chr1:97279550-97279569 MsG0180005900.01.T01:intron 30.0%
TGTGTGTATAATATTGCATG+TGG - Chr1:97277699-97277718 None:intergenic 30.0%
TTATGTCAAACTGGAAACTT+TGG + Chr1:97280370-97280389 MsG0180005900.01.T01:CDS 30.0%
TTGAAAGCCCATCATAAATA+AGG + Chr1:97277041-97277060 MsG0180005900.01.T01:intron 30.0%
TTGTCATTGTTGTGATCTAA+AGG + Chr1:97279549-97279568 MsG0180005900.01.T01:intron 30.0%
TTTAACACATGTCTGTTACT+TGG + Chr1:97277566-97277585 MsG0180005900.01.T01:intron 30.0%
! AACTTGTAGTGCTTGATTTT+AGG + Chr1:97280282-97280301 MsG0180005900.01.T01:CDS 30.0%
! ATGTTTTCATCGTTGTTGTA+GGG - Chr1:97278410-97278429 None:intergenic 30.0%
! TATGTTTTCATCGTTGTTGT+AGG - Chr1:97278411-97278430 None:intergenic 30.0%
! TTTGATCCTTGACATCTTTT+AGG - Chr1:97275328-97275347 None:intergenic 30.0%
!! AATATATGTTGTCACTTTCG+AGG + Chr1:97280151-97280170 MsG0180005900.01.T01:CDS 30.0%
!! AGTTTGATTTGATGTTCCTT+TGG - Chr1:97275437-97275456 None:intergenic 30.0%
!! ATATATGTTGTCACTTTCGA+GGG + Chr1:97280152-97280171 MsG0180005900.01.T01:CDS 30.0%
!! CATATAGCAAGTTTTGTAAG+TGG - Chr1:97277630-97277649 None:intergenic 30.0%
!! CGATAATTAACTTTTTGGTC+GGG - Chr1:97279795-97279814 None:intergenic 30.0%
!! GCGATAATTAACTTTTTGGT+CGG - Chr1:97279796-97279815 None:intergenic 30.0%
!! TGTAGCTGGCTTTATAAATA+TGG - Chr1:97278514-97278533 None:intergenic 30.0%
!! TTATTTATGATGGGCTTTCA+AGG - Chr1:97277042-97277061 None:intergenic 30.0%
!!! AATTCACCGGAGAAATTTTT+TGG + Chr1:97279704-97279723 MsG0180005900.01.T01:CDS 30.0%
!!! ACTTATTTTTGTGTAAGAGC+AGG + Chr1:97278178-97278197 MsG0180005900.01.T01:intron 30.0%
!!! AGGGCATACTGATTTAATTT+TGG + Chr1:97275394-97275413 MsG0180005900.01.T01:CDS 30.0%
!!! GGGCATACTGATTTAATTTT+GGG + Chr1:97275395-97275414 MsG0180005900.01.T01:CDS 30.0%
!!! GTTATTTTAAAACGATGGCA+TGG - Chr1:97279050-97279069 None:intergenic 30.0%
AAAACACCAATCAAACGTGT+AGG - Chr1:97280582-97280601 None:intergenic 35.0%
AAAATGTAGTGTGTATTCCG+GGG + Chr1:97280505-97280524 MsG0180005900.01.T01:CDS 35.0%
AACCATGAGTTATGTCAAAC+TGG + Chr1:97280361-97280380 MsG0180005900.01.T01:CDS 35.0%
AATGATATCAAGCACATCAC+AGG - Chr1:97279613-97279632 None:intergenic 35.0%
ACCTATGTTACGTCTTCTAA+CGG + Chr1:97279846-97279865 MsG0180005900.01.T01:CDS 35.0%
AGAATGTGTTAATTTCCTCG+AGG + Chr1:97279330-97279349 MsG0180005900.01.T01:intron 35.0%
AGCAAATAGAATGAAGGAGT+TGG + Chr1:97278465-97278484 MsG0180005900.01.T01:intron 35.0%
AGTGCATGTCTAATACATGT+TGG - Chr1:97277079-97277098 None:intergenic 35.0%
ATAGATATTCATCATCCTCG+AGG - Chr1:97279348-97279367 None:intergenic 35.0%
ATCAATCTCGAAATTGTGGT+TGG + Chr1:97280066-97280085 MsG0180005900.01.T01:CDS 35.0%
ATGAAATACCCTCAACCTTT+AGG + Chr1:97280240-97280259 MsG0180005900.01.T01:CDS 35.0%
ATGATATCAAGCACATCACA+GGG - Chr1:97279612-97279631 None:intergenic 35.0%
ATTAACCAACCTAAAGGTTG+AGG - Chr1:97280252-97280271 None:intergenic 35.0%
CAAAATGTAGTGTGTATTCC+GGG + Chr1:97280504-97280523 MsG0180005900.01.T01:CDS 35.0%
CACTCTTTGGTTAAGTACTT+TGG + Chr1:97278760-97278779 MsG0180005900.01.T01:intron 35.0%
CATATAAGGCTTGATTTCAG+AGG - Chr1:97279955-97279974 None:intergenic 35.0%
CATATTCCTACACGTTTGAT+TGG + Chr1:97280573-97280592 MsG0180005900.01.T01:CDS 35.0%
CATGAAAAAAAGAGGATCAC+AGG + Chr1:97279385-97279404 MsG0180005900.01.T01:intron 35.0%
CATTCCAATTGTTCATGAGT+AGG - Chr1:97277282-97277301 None:intergenic 35.0%
CTTTGGTTAAGTACTTTGGA+GGG + Chr1:97278764-97278783 MsG0180005900.01.T01:intron 35.0%
GCAAAATGTAGTGTGTATTC+CGG + Chr1:97280503-97280522 MsG0180005900.01.T01:CDS 35.0%
GCAAATAGAATGAAGGAGTT+GGG + Chr1:97278466-97278485 MsG0180005900.01.T01:intron 35.0%
GCAAATGTATGATGATAACC+AGG - Chr1:97278065-97278084 None:intergenic 35.0%
GTCATACCAGCTAGTAAATA+TGG + Chr1:97276030-97276049 MsG0180005900.01.T01:intron 35.0%
GTCTATCAATCTCGAAATTG+TGG + Chr1:97280062-97280081 MsG0180005900.01.T01:CDS 35.0%
GTGCATGTCTAATACATGTT+GGG - Chr1:97277078-97277097 None:intergenic 35.0%
GTTGTGATCTAAAGGGAAAA+AGG + Chr1:97279557-97279576 MsG0180005900.01.T01:intron 35.0%
TAAACATAGATGAGTGCTTC+TGG + Chr1:97279817-97279836 MsG0180005900.01.T01:CDS 35.0%
TACTCATGAACAGAAAGCAA+GGG - Chr1:97278133-97278152 None:intergenic 35.0%
TATATGGTGCATAACTGACA+AGG - Chr1:97276821-97276840 None:intergenic 35.0%
TCAATCTCGAAATTGTGGTT+GGG + Chr1:97280067-97280086 MsG0180005900.01.T01:CDS 35.0%
TCAGTTATGCACCATATATG+AGG + Chr1:97276823-97276842 MsG0180005900.01.T01:intron 35.0%
TCTTTGGTTAAGTACTTTGG+AGG + Chr1:97278763-97278782 MsG0180005900.01.T01:intron 35.0%
TGACACTTAATAGAAAGCTG+CGG + Chr1:97278378-97278397 MsG0180005900.01.T01:intron 35.0%
TGATTAAGCACATTCTTTCC+TGG + Chr1:97278044-97278063 MsG0180005900.01.T01:intron 35.0%
TGGGTTACTTATTCGACAAT+GGG + Chr1:97280086-97280105 MsG0180005900.01.T01:CDS 35.0%
TGTTGTACATCTGTGAAGTT+AGG - Chr1:97276707-97276726 None:intergenic 35.0%
TTAACCAACCTAAAGGTTGA+GGG - Chr1:97280251-97280270 None:intergenic 35.0%
TTCCAGTTTGACATAACTCA+TGG - Chr1:97280366-97280385 None:intergenic 35.0%
TTGGGTTACTTATTCGACAA+TGG + Chr1:97280085-97280104 MsG0180005900.01.T01:CDS 35.0%
! AACGGATATTTTATCTCGGT+TGG + Chr1:97279864-97279883 MsG0180005900.01.T01:CDS 35.0%
! ACGGATATTTTATCTCGGTT+GGG + Chr1:97279865-97279884 MsG0180005900.01.T01:CDS 35.0%
! ATGTGTATTTTATGCTGGTC+TGG + Chr1:97279409-97279428 MsG0180005900.01.T01:intron 35.0%
! CACATGGACGATTTTCTTTT+AGG + Chr1:97276323-97276342 MsG0180005900.01.T01:intron 35.0%
! CAGGTATGTGTATTTTATGC+TGG + Chr1:97279404-97279423 MsG0180005900.01.T01:intron 35.0%
! GCGTTTTGCACATTAAATGA+GGG - Chr1:97277358-97277377 None:intergenic 35.0%
! GGGCTTTTCATAAAATTCAC+CGG + Chr1:97279691-97279710 MsG0180005900.01.T01:CDS 35.0%
! TGCGTTTTGCACATTAAATG+AGG - Chr1:97277359-97277378 None:intergenic 35.0%
! TGCTCTATAAGGATGCATTT+TGG + Chr1:97278082-97278101 MsG0180005900.01.T01:intron 35.0%
! TGGATGTTGTTTGTCGAAAA+TGG + Chr1:97279429-97279448 MsG0180005900.01.T01:intron 35.0%
! TGTCTACATTTTCAAACAGC+TGG - Chr1:97278212-97278231 None:intergenic 35.0%
! TTTCTTTTTGTTGGGGAGTA+GGG + Chr1:97279247-97279266 MsG0180005900.01.T01:intron 35.0%
! TTTTCTTTTTGTTGGGGAGT+AGG + Chr1:97279246-97279265 MsG0180005900.01.T01:intron 35.0%
! TTTTGTAAGTGGCTCCTTAT+TGG - Chr1:97277619-97277638 None:intergenic 35.0%
!! AAAGGTTGAGGGTATTTCAT+TGG - Chr1:97280240-97280259 None:intergenic 35.0%
!! AAATTTGGTGTTGCACATGT+TGG - Chr1:97276442-97276461 None:intergenic 35.0%
!! AAGGTTGAGGGTATTTCATT+GGG - Chr1:97280239-97280258 None:intergenic 35.0%
!! AGCTGGCTTTATAAATATGG+AGG - Chr1:97278511-97278530 None:intergenic 35.0%
!! CACAGAGCCTTATTTATGAT+GGG - Chr1:97277051-97277070 None:intergenic 35.0%
!! CTCTGAAATCAAGCCTTATA+TGG + Chr1:97279953-97279972 MsG0180005900.01.T01:CDS 35.0%
!! TCACAGAGCCTTATTTATGA+TGG - Chr1:97277052-97277071 None:intergenic 35.0%
!! TGACCTTTGTTATTCCAACT+AGG - Chr1:97278664-97278683 None:intergenic 35.0%
!!! ACACTGATAGCGCTATTTTT+TGG - Chr1:97276495-97276514 None:intergenic 35.0%
!!! ATAGCGCTATTTTTTGGTGA+AGG - Chr1:97276489-97276508 None:intergenic 35.0%
!!! GATGACTTTTTTCAGTTTGC+CGG + Chr1:97279651-97279670 MsG0180005900.01.T01:CDS 35.0%
AAAGGTCACATGTGCTCATT+AGG + Chr1:97278676-97278695 MsG0180005900.01.T01:intron 40.0%
AACAAAAGTCAAGAAGACGC+CGG - Chr1:97275598-97275617 None:intergenic 40.0%
AAGCTGGGTTTCAAGATAAG+AGG + Chr1:97275276-97275295 MsG0180005900.01.T01:CDS 40.0%
AAGGGATGTGTACAGGATAA+GGG + Chr1:97280316-97280335 MsG0180005900.01.T01:CDS 40.0%
AATACCCTCAACCTTTAGGT+TGG + Chr1:97280244-97280263 MsG0180005900.01.T01:CDS 40.0%
ACAATTTCGGCTATCTCAAG+TGG - Chr1:97276880-97276899 None:intergenic 40.0%
ACGCCTAGTTGGAATAACAA+AGG + Chr1:97278658-97278677 MsG0180005900.01.T01:intron 40.0%
AGCTGGGTTTCAAGATAAGA+GGG + Chr1:97275277-97275296 MsG0180005900.01.T01:CDS 40.0%
AGGGTTCTTCACATGATTGT+AGG + Chr1:97279156-97279175 MsG0180005900.01.T01:intron 40.0%
ATATGGATCTTAACCGTGCT+TGG + Chr1:97279970-97279989 MsG0180005900.01.T01:CDS 40.0%
ATCTGAATGGATGGATAGCT+TGG + Chr1:97277487-97277506 MsG0180005900.01.T01:intron 40.0%
ATGATTGTAGGGGAATTGCA+TGG + Chr1:97279168-97279187 MsG0180005900.01.T01:intron 40.0%
ATTGAGCAACCCGAATAAGT+GGG + Chr1:97280436-97280455 MsG0180005900.01.T01:CDS 40.0%
CAAATCAAACTTGAGACCAC+TGG + Chr1:97275446-97275465 MsG0180005900.01.T01:CDS 40.0%
CAACAAAACAGAATTCCGCT+TGG + Chr1:97277665-97277684 MsG0180005900.01.T01:intron 40.0%
CAGCATGCTTAATCCTCATT+AGG - Chr1:97277102-97277121 None:intergenic 40.0%
CATGCCTACTCATGAACAAT+TGG + Chr1:97277275-97277294 MsG0180005900.01.T01:intron 40.0%
CGTTACAAAACTTGGCACAA+TGG + Chr1:97278326-97278345 MsG0180005900.01.T01:intron 40.0%
CTACTCATGAACAGAAAGCA+AGG - Chr1:97278134-97278153 None:intergenic 40.0%
CTCTCATATCCCCACTTATT+CGG - Chr1:97280449-97280468 None:intergenic 40.0%
CTTGCTTTCTGTTCATGAGT+AGG + Chr1:97278132-97278151 MsG0180005900.01.T01:intron 40.0%
GCACGGTTAAGATCCATATA+AGG - Chr1:97279969-97279988 None:intergenic 40.0%
GCCTCAATAATCAATGTAGC+TGG - Chr1:97278528-97278547 None:intergenic 40.0%
GCGATGCCAAAAAATTTCTC+CGG - Chr1:97279713-97279732 None:intergenic 40.0%
GCTGTCCGATATAGCAAATA+AGG - Chr1:97276078-97276097 None:intergenic 40.0%
GCTTACATGAGATGTGGTTA+GGG - Chr1:97277161-97277180 None:intergenic 40.0%
GGGTTCTTCACATGATTGTA+GGG + Chr1:97279157-97279176 MsG0180005900.01.T01:intron 40.0%
GGTTCTTCACATGATTGTAG+GGG + Chr1:97279158-97279177 MsG0180005900.01.T01:intron 40.0%
TAAATAGGGGGGGTTATTCA+TGG - Chr1:97276955-97276974 None:intergenic 40.0%
TAAGGGATGTGTACAGGATA+AGG + Chr1:97280315-97280334 MsG0180005900.01.T01:CDS 40.0%
TAGGCATGCTCATTGTTGAT+TGG - Chr1:97277263-97277282 None:intergenic 40.0%
TCCGTTAGAAGACGTAACAT+AGG - Chr1:97279850-97279869 None:intergenic 40.0%
TCTCATATCCCCACTTATTC+GGG - Chr1:97280448-97280467 None:intergenic 40.0%
TGATAGACATGCAAGATCTC+AGG - Chr1:97280050-97280069 None:intergenic 40.0%
TGATTTGATGTTCCTTTGGC+AGG - Chr1:97275433-97275452 None:intergenic 40.0%
TGCACCATATATGAGGTACA+CGG + Chr1:97276830-97276849 MsG0180005900.01.T01:intron 40.0%
TGCTTACATGAGATGTGGTT+AGG - Chr1:97277162-97277181 None:intergenic 40.0%
TGGAAAACCAAATGCTTCCT+TGG + Chr1:97277200-97277219 MsG0180005900.01.T01:intron 40.0%
TGTACATCTGTGAAGTTAGG+TGG - Chr1:97276704-97276723 None:intergenic 40.0%
TTAGACATGCACTCCTAATG+AGG + Chr1:97277086-97277105 MsG0180005900.01.T01:intron 40.0%
TTGCAATCACATCTTAGCCT+TGG - Chr1:97276662-97276681 None:intergenic 40.0%
TTGTCCGTGTACCTCATATA+TGG - Chr1:97276837-97276856 None:intergenic 40.0%
! AGAGTGCTTTGCAAGCTAAT+GGG - Chr1:97278746-97278765 None:intergenic 40.0%
! AGTGTTAGCTTGAGTCACAA+TGG + Chr1:97276510-97276529 MsG0180005900.01.T01:intron 40.0%
! CATGCAGGCCTATCTAAAAT+TGG + Chr1:97277180-97277199 MsG0180005900.01.T01:intron 40.0%
! CTCTGAGGAATTTGTCTTGA+TGG + Chr1:97280010-97280029 MsG0180005900.01.T01:CDS 40.0%
! GCCAGCTACATTGATTATTG+AGG + Chr1:97278524-97278543 MsG0180005900.01.T01:intron 40.0%
! TGCTTTTGACAAATGCTCTG+AGG + Chr1:97279995-97280014 MsG0180005900.01.T01:CDS 40.0%
! TTCTTTTTGTTGGGGAGTAG+GGG + Chr1:97279248-97279267 MsG0180005900.01.T01:intron 40.0%
! TTGTGATGGAAAAGAACACG+AGG + Chr1:97275744-97275763 MsG0180005900.01.T01:intron 40.0%
!! AAAATAGAAGGGCATCACCA+AGG + Chr1:97276642-97276661 MsG0180005900.01.T01:intron 40.0%
!! AAGAGTGCTTTGCAAGCTAA+TGG - Chr1:97278747-97278766 None:intergenic 40.0%
!! TAATGAGCCAAGGAAGCATT+TGG - Chr1:97277210-97277229 None:intergenic 40.0%
!! TTAGCTTGCAAAGCACTCTT+TGG + Chr1:97278747-97278766 MsG0180005900.01.T01:intron 40.0%
!!! CATGCTTTTGGTTGATGAGA+AGG - Chr1:97276770-97276789 None:intergenic 40.0%
AAAAAACCGCGATGATGCGT+TGG + Chr1:97275241-97275260 MsG0180005900.01.T01:CDS 45.0%
AATGGGGACTCGTTAAATGC+TGG - Chr1:97278729-97278748 None:intergenic 45.0%
ACTCGTTAAATGCTGGTGCA+TGG - Chr1:97278722-97278741 None:intergenic 45.0%
AGAGTCAAGCAGCTGCTTAA+AGG + Chr1:97275374-97275393 MsG0180005900.01.T01:CDS 45.0%
AGTAAGAGTTGTTGACGCTG+TGG + Chr1:97280115-97280134 MsG0180005900.01.T01:CDS 45.0%
ATCGTCCATGTGCTTTGTGA+AGG - Chr1:97276315-97276334 None:intergenic 45.0%
ATGCGCCACCCAAATTATTG+AGG - Chr1:97277519-97277538 None:intergenic 45.0%
ATTCAACACCTTCCTGCCAA+AGG + Chr1:97275418-97275437 MsG0180005900.01.T01:CDS 45.0%
CACATCTCATGTAAGCATGC+AGG + Chr1:97277165-97277184 MsG0180005900.01.T01:intron 45.0%
CATGTGGTGTATAGTCCAAG+CGG - Chr1:97277683-97277702 None:intergenic 45.0%
CATTGAGCAACCCGAATAAG+TGG + Chr1:97280435-97280454 MsG0180005900.01.T01:CDS 45.0%
CTGCATGCTTACATGAGATG+TGG - Chr1:97277167-97277186 None:intergenic 45.0%
GAGTCAAGCAGCTGCTTAAA+GGG + Chr1:97275375-97275394 MsG0180005900.01.T01:CDS 45.0%
GAGTGCTTTGCAAGCTAATG+GGG - Chr1:97278745-97278764 None:intergenic 45.0%
GATTGGCAGTTGAGACCATT+GGG - Chr1:97277246-97277265 None:intergenic 45.0%
GCTGGGTTTCAAGATAAGAG+GGG + Chr1:97275278-97275297 MsG0180005900.01.T01:CDS 45.0%
GGAGCAGCCCTCAATAATTT+GGG + Chr1:97277508-97277527 MsG0180005900.01.T01:intron 45.0%
GTCACATGTGCTCATTAGGA+GGG + Chr1:97278680-97278699 MsG0180005900.01.T01:intron 45.0%
GTCTGTGTTAAAACCCTAGC+CGG + Chr1:97275576-97275595 MsG0180005900.01.T01:intron 45.0%
TAGGAATATGCTCCATGAGC+TGG - Chr1:97280563-97280582 None:intergenic 45.0%
TCACTTTCGAGGGCAACATA+GGG + Chr1:97280162-97280181 MsG0180005900.01.T01:CDS 45.0%
TGATTGGCAGTTGAGACCAT+TGG - Chr1:97277247-97277266 None:intergenic 45.0%
TGCATTATGCTTCCAGCTCA+TGG + Chr1:97280548-97280567 MsG0180005900.01.T01:CDS 45.0%
TGCGCCACCCAAATTATTGA+GGG - Chr1:97277518-97277537 None:intergenic 45.0%
TGGAGCAGCCCTCAATAATT+TGG + Chr1:97277507-97277526 MsG0180005900.01.T01:intron 45.0%
TGGCGCATGCTTATATGCAT+GGG + Chr1:97277531-97277550 MsG0180005900.01.T01:intron 45.0%
TGTCAAAAGCAAGCCAAGCA+CGG - Chr1:97279986-97280005 None:intergenic 45.0%
TTCCTCCTTCACAAAGCACA+TGG + Chr1:97276307-97276326 MsG0180005900.01.T01:intron 45.0%
TTCGTCCTTCACAAAGCACA+TGG + Chr1:97276256-97276275 MsG0180005900.01.T01:intron 45.0%
TTGAGCAACCCGAATAAGTG+GGG + Chr1:97280437-97280456 MsG0180005900.01.T01:CDS 45.0%
TTGATGTTCCTTTGGCAGGA+AGG - Chr1:97275429-97275448 None:intergenic 45.0%
TTGCTATATCGGACAGCCAA+GGG + Chr1:97276081-97276100 MsG0180005900.01.T01:intron 45.0%
TTGGTCGGGTATGCTGATAA+AGG - Chr1:97279781-97279800 None:intergenic 45.0%
! AGTGTTCAAGAGAGTGTGAG+AGG - Chr1:97279016-97279035 None:intergenic 45.0%
! CGAGACACATGTTGCTTCTT+TGG + Chr1:97279098-97279117 MsG0180005900.01.T01:intron 45.0%
! GGCGTCTTCTTGACTTTTGT+TGG + Chr1:97275597-97275616 MsG0180005900.01.T01:intron 45.0%
! GTGTTCAAGAGAGTGTGAGA+GGG - Chr1:97279015-97279034 None:intergenic 45.0%
! TGTTCAAGAGAGTGTGAGAG+GGG - Chr1:97279014-97279033 None:intergenic 45.0%
! TTTGCTATATCGGACAGCCA+AGG + Chr1:97276080-97276099 MsG0180005900.01.T01:intron 45.0%
!!! AACGCATCATCGCGGTTTTT+TGG - Chr1:97275242-97275261 None:intergenic 45.0%
!!! ACGCATCATCGCGGTTTTTT+GGG - Chr1:97275241-97275260 None:intergenic 45.0%
CACTTTCGAGGGCAACATAG+GGG + Chr1:97280163-97280182 MsG0180005900.01.T01:CDS 50.0%
CCTCCAATTCTTGCACACAC+CGG - Chr1:97279673-97279692 None:intergenic 50.0%
CGGTGTGTGCAAGAATTGGA+GGG + Chr1:97279671-97279690 MsG0180005900.01.T01:CDS 50.0%
GCACATCACAGGGAAGTTCA+CGG - Chr1:97279602-97279621 None:intergenic 50.0%
GCAGCCCTCAATAATTTGGG+TGG + Chr1:97277511-97277530 MsG0180005900.01.T01:intron 50.0%
GCTTATTGGACACGCCTAGT+TGG + Chr1:97278647-97278666 MsG0180005900.01.T01:intron 50.0%
GGCGCATGCTTATATGCATG+GGG + Chr1:97277532-97277551 MsG0180005900.01.T01:intron 50.0%
GGCTATCTCAAGTGGCAAGA+AGG - Chr1:97276872-97276891 None:intergenic 50.0%
GGCTGCACACTCTAATTGCT+TGG - Chr1:97277418-97277437 None:intergenic 50.0%
GGTCACATGTGCTCATTAGG+AGG + Chr1:97278679-97278698 MsG0180005900.01.T01:intron 50.0%
GGTGTCCATGTGCTTTGTGA+AGG - Chr1:97276264-97276283 None:intergenic 50.0%
GTCCATGTGCTTTGTGAAGG+AGG - Chr1:97276261-97276280 None:intergenic 50.0%
GTGGCGCATGCTTATATGCA+TGG + Chr1:97277530-97277549 MsG0180005900.01.T01:intron 50.0%
TGGCAGCGATTGTACAAGCT+GGG + Chr1:97275261-97275280 MsG0180005900.01.T01:CDS 50.0%
TGGGCATACTTGCATGCGTA+TGG + Chr1:97278485-97278504 MsG0180005900.01.T01:intron 50.0%
TTGCCGGTGTGTGCAAGAAT+TGG + Chr1:97279667-97279686 MsG0180005900.01.T01:CDS 50.0%
TTGGCAGCGATTGTACAAGC+TGG + Chr1:97275260-97275279 MsG0180005900.01.T01:CDS 50.0%
! GTCACTTTCGAGGGCAACAT+AGG + Chr1:97280161-97280180 MsG0180005900.01.T01:CDS 50.0%
ACTAGCTGGTATGACCCGTG+CGG - Chr1:97276025-97276044 None:intergenic 55.0%
CCGGTGTGTGCAAGAATTGG+AGG + Chr1:97279670-97279689 MsG0180005900.01.T01:CDS 55.0%
! AAGTCAAGAAGACGCCGGCT+AGG - Chr1:97275593-97275612 None:intergenic 55.0%
! AGTCAAGAAGACGCCGGCTA+GGG - Chr1:97275592-97275611 None:intergenic 55.0%
TATGACCCGTGCGGAGCACA+CGG - Chr1:97276016-97276035 None:intergenic 60.0%
TCGCTGCCAACGCATCATCG+CGG - Chr1:97275250-97275269 None:intergenic 60.0%
ATCGACCCGTGTGCTCCGCA+CGG + Chr1:97276007-97276026 MsG0180005900.01.T01:intron 65.0%
ATGACCCGTGCGGAGCACAC+GGG - Chr1:97276015-97276034 None:intergenic 65.0%
GTGCGGAGCACACGGGTCGA+TGG - Chr1:97276008-97276027 None:intergenic 70.0%
TCGACCCGTGTGCTCCGCAC+GGG + Chr1:97276008-97276027 MsG0180005900.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 97275230 97280643 97275230 ID=MsG0180005900.01;Name=MsG0180005900.01
Chr1 mRNA 97275230 97280643 97275230 ID=MsG0180005900.01.T01;Parent=MsG0180005900.01;Name=MsG0180005900.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|2|0|436
Chr1 exon 97275230 97275467 97275230 ID=MsG0180005900.01.T01:exon:16309;Parent=MsG0180005900.01.T01
Chr1 exon 97279571 97280643 97279571 ID=MsG0180005900.01.T01:exon:16310;Parent=MsG0180005900.01.T01
Chr1 CDS 97275230 97275467 97275230 ID=MsG0180005900.01.T01:cds;Parent=MsG0180005900.01.T01
Chr1 CDS 97279571 97280643 97279571 ID=MsG0180005900.01.T01:cds;Parent=MsG0180005900.01.T01
Gene Sequence

>MsG0180005900.01.T01

ATGGAGATCCCAAAAAACCGCGATGATGCGTTGGCAGCGATTGTACAAGCTGGGTTTCAAGATAAGAGGGGAGATTACAATGAGCTTTTAAAACTCCTAAAAGATGTCAAGGATCAAACAATTTATACAAGACGTTCTGCGGCAAGAGTCAAGCAGCTGCTTAAAGGGCATACTGATTTAATTTTGGGATTCAACACCTTCCTGCCAAAGGAACATCAAATCAAACTTGAGACCACTGGGAAAAAGGTGATGAATGTACAAGAGAACCGTGAACTTCCCTGTGATGTGCTTGATATCATTTACCAAACATTAGATTTTGATGACTTTTTTCAGTTTGCCGGTGTGTGCAAGAATTGGAGGGCTTTTCATAAAATTCACCGGAGAAATTTTTTGGCATCGCAAGAACCATTAATTCTTCAAGTTTCTTATGTTATTCGATCACTTTCCTTTATCAGCATACCCGACCAAAAAGTTAATTATCGCTTAAACATAGATGAGTGCTTCTGGAATTATACCTATGTTACGTCTTCTAACGGATATTTTATCTCGGTTGGGAGAAATAATTCAGTTTTGCTACTCAATCCATTTACAAGAATAAAGAAGGTAATCAATACATGTCCCTCTGAAATCAAGCCTTATATGGATCTTAACCGTGCTTGGCTTGCTTTTGACAAATGCTCTGAGGAATTTGTCTTGATGGTTTTGTGCTATTTTCCTGAGATCTTGCATGTCTATCAATCTCGAAATTGTGGTTGGGTTACTTATTCGACAATGGGAAATAAAGTAAGAGTTGTTGACGCTGTGGTTTTGCATAATATAATATATGTTGTCACTTTCGAGGGCAACATAGGGGTAATTAGCTTGAATTCATCAAAAATTAAATTTCTAACACTAAAGAATACTCCCAATGAAATACCCTCAACCTTTAGGTTGGTTAATTGTAATGAACAACTTGTAGTGCTTGATTTTAGGTACAATAAAATAAGGGATGTGTACAGGATAAGGGATGTGTACAAGATAGACTTCTCAACCATGAGTTATGTCAAACTGGAAACTTTGGGCGACATTGCGTTATTTCATGCTTCAGAAAGAAATTCTTATGCATTGAGCAACCCGAATAAGTGGGGATATGAGAGCAACTTTGTGTATGCATTGAACGACATTAAATCTGCAAAATGTAGTGTGTATTCCGGGGATGATAAAAAATTGAAAAAATGCATTATGCTTCCAGCTCATGGAGCATATTCCTACACGTTTGATTGGTGTTTTAGACATCAACAATATGAGGTAGATTATTCCCTAGTTGAGTGA
Protein sequence

>MsG0180005900.01.T01

MEIPKNRDDALAAIVQAGFQDKRGDYNELLKLLKDVKDQTIYTRRSAARVKQLLKGHTDLILGFNTFLPKEHQIKLETTGKKVMNVQENRELPCDVLDIIYQTLDFDDFFQFAGVCKNWRAFHKIHRRNFLASQEPLILQVSYVIRSLSFISIPDQKVNYRLNIDECFWNYTYVTSSNGYFISVGRNNSVLLLNPFTRIKKVINTCPSEIKPYMDLNRAWLAFDKCSEEFVLMVLCYFPEILHVYQSRNCGWVTYSTMGNKVRVVDAVVLHNIIYVVTFEGNIGVISLNSSKIKFLTLKNTPNEIPSTFRLVNCNEQLVVLDFRYNKIRDVYRIRDVYKIDFSTMSYVKLETLGDIALFHASERNSYALSNPNKWGYESNFVYALNDIKSAKCSVYSGDDKKLKKCIMLPAHGAYSYTFDWCFRHQQYEVDYSLVE*