AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006709.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006709.01.T01 MTR_2g013370 90.217 276 24 2 1 275 1 274 5.11e-176 486
MsG0280006709.01.T01 MTR_4g089095 52.903 310 99 12 1 275 1 298 5.09e-85 256
MsG0280006709.01.T01 MTR_4g089095 52.471 263 82 10 44 275 14 264 2.12e-72 223
MsG0280006709.01.T01 MTR_2g096740 48.092 131 56 5 46 175 62 181 6.69e-29 111
MsG0280006709.01.T01 MTR_2g096740 48.092 131 56 5 46 175 77 196 7.66e-29 111
MsG0280006709.01.T01 MTR_4g088580 63.415 82 28 2 48 127 57 138 8.04e-29 113
MsG0280006709.01.T01 MTR_8g479350 60.241 83 30 2 39 120 63 143 1.17e-28 112
MsG0280006709.01.T01 MTR_3g091820 66.197 71 23 1 30 99 27 97 1.33e-28 111
MsG0280006709.01.T01 MTR_4g063780 59.302 86 29 2 45 125 74 158 1.50e-27 108
MsG0280006709.01.T01 MTR_7g024670 60.920 87 29 2 38 119 69 155 1.51e-27 109
MsG0280006709.01.T01 MTR_4g022370 54.945 91 33 2 45 127 81 171 1.18e-26 107
MsG0280006709.01.T01 MTR_8g027295 58.108 74 30 1 28 100 6 79 1.34e-26 105
MsG0280006709.01.T01 MTR_8g079060 58.904 73 30 0 44 116 27 99 1.41e-26 103
MsG0280006709.01.T01 MTR_2g093220 77.193 57 12 1 44 99 38 94 1.92e-26 105
MsG0280006709.01.T01 MTR_2g014170 83.673 49 8 0 45 93 44 92 2.30e-26 105
MsG0280006709.01.T01 MTR_8g068210 60.870 69 26 1 40 107 26 94 2.36e-26 105
MsG0280006709.01.T01 MTR_8g015840 60.811 74 22 1 20 93 1 67 5.49e-26 102
MsG0280006709.01.T01 MTR_1g077600 59.420 69 27 1 32 99 29 97 6.26e-26 103
MsG0280006709.01.T01 MTR_1g077600 59.420 69 27 1 32 99 29 97 6.29e-26 103
MsG0280006709.01.T01 MTR_4g461080 77.193 57 12 1 42 97 25 81 1.14e-25 102
MsG0280006709.01.T01 MTR_3g090430 74.138 58 14 1 45 101 50 107 1.63e-25 103
MsG0280006709.01.T01 MTR_7g059400 79.245 53 10 1 48 99 78 130 1.82e-25 103
MsG0280006709.01.T01 MTR_4g109980 80.000 50 10 0 44 93 38 87 4.17e-25 102
MsG0280006709.01.T01 MTR_2g059540 79.592 49 10 0 45 93 30 78 9.70e-25 98.6
MsG0280006709.01.T01 MTR_1g056810 74.074 54 13 1 47 99 13 66 5.11e-24 98.6
MsG0280006709.01.T01 MTR_3g077750 46.789 109 41 4 1 93 1 108 2.74e-23 97.4
MsG0280006709.01.T01 MTR_5g031440 75.000 48 12 0 46 93 43 90 3.61e-23 97.1
MsG0280006709.01.T01 MTR_3g435480 75.000 52 12 1 48 98 138 189 9.04e-23 97.4
MsG0280006709.01.T01 MTR_7g010950 74.074 54 13 1 46 98 135 188 1.13e-22 97.4
MsG0280006709.01.T01 MTR_4g082060 66.102 59 19 1 46 103 122 180 1.46e-22 97.1
MsG0280006709.01.T01 MTR_2g014060 78.261 46 10 0 48 93 27 72 2.68e-22 94.7
MsG0280006709.01.T01 MTR_6g027460 67.241 58 18 1 44 100 94 151 2.87e-22 95.1
MsG0280006709.01.T01 MTR_6g027450 65.517 58 19 1 44 100 87 144 2.93e-22 94.4
MsG0280006709.01.T01 MTR_2g016030 62.963 54 20 0 46 99 47 100 6.42e-22 89.7
MsG0280006709.01.T01 MTR_7g086780 67.857 56 17 1 46 100 99 154 6.88e-22 94.7
MsG0280006709.01.T01 MTR_6g012450 73.077 52 13 1 48 98 138 189 7.56e-22 95.1
MsG0280006709.01.T01 MTR_5g041420 58.209 67 27 1 33 98 125 191 1.74e-21 92.4
MsG0280006709.01.T01 MTR_8g044220 66.038 53 17 1 48 99 120 172 5.26e-21 92.4
MsG0280006709.01.T01 MTR_5g041530 38.843 121 69 2 33 152 127 243 2.76e-20 89.7
MsG0280006709.01.T01 MTR_5g041400 50.704 71 35 0 48 118 121 191 5.44e-20 88.6
MsG0280006709.01.T01 MTR_5g041380 47.436 78 41 0 48 125 129 206 5.67e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006709.01.T01 AT1G28310 65.060 83 28 1 20 101 1 83 3.63e-29 112
MsG0280006709.01.T01 AT1G28310 65.060 83 28 1 20 101 25 107 6.69e-29 112
MsG0280006709.01.T01 AT5G60200 56.842 95 35 3 19 112 32 121 8.46e-28 108
MsG0280006709.01.T01 AT5G66940 65.278 72 24 1 42 113 28 98 2.10e-27 106
MsG0280006709.01.T01 AT3G55370 66.667 66 21 1 45 109 75 140 2.95e-27 108
MsG0280006709.01.T01 AT3G55370 66.667 66 21 1 45 109 75 140 3.06e-27 108
MsG0280006709.01.T01 AT3G55370 66.667 66 21 1 45 109 120 185 3.41e-27 108
MsG0280006709.01.T01 AT5G60850 58.621 87 32 2 34 116 36 122 4.15e-27 107
MsG0280006709.01.T01 AT1G51700 60.000 75 26 1 38 108 21 95 4.30e-27 104
MsG0280006709.01.T01 AT3G45610 48.571 105 48 3 44 144 38 140 1.12e-26 104
MsG0280006709.01.T01 AT3G61850 75.439 57 13 1 44 99 60 116 2.05e-26 105
MsG0280006709.01.T01 AT3G61850 75.439 57 13 1 44 99 60 116 2.05e-26 105
MsG0280006709.01.T01 AT3G61850 75.439 57 13 1 44 99 72 128 2.30e-26 105
MsG0280006709.01.T01 AT2G28510 77.193 57 12 1 44 99 46 102 2.37e-26 104
MsG0280006709.01.T01 AT3G61850 75.439 57 13 1 44 99 60 116 3.18e-26 105
MsG0280006709.01.T01 AT3G61850 75.439 57 13 1 44 99 72 128 3.79e-26 105
MsG0280006709.01.T01 AT3G50410 64.789 71 18 2 30 99 20 84 4.31e-26 103
MsG0280006709.01.T01 AT2G37590 61.429 70 24 2 35 101 76 145 1.05e-25 103
MsG0280006709.01.T01 AT4G24060 73.684 57 14 1 44 99 51 107 1.54e-25 103
MsG0280006709.01.T01 AT1G64620 57.692 78 31 1 16 93 21 96 3.42e-25 102
MsG0280006709.01.T01 AT1G07640 70.690 58 15 1 46 101 21 78 3.54e-25 101
MsG0280006709.01.T01 AT2G28810 77.551 49 11 0 45 93 76 124 3.85e-25 102
MsG0280006709.01.T01 AT4G38000 50.538 93 40 2 45 137 40 126 4.39e-25 100
MsG0280006709.01.T01 AT2G28810 77.551 49 11 0 45 93 93 141 4.96e-25 102
MsG0280006709.01.T01 AT3G21270 79.245 53 10 1 46 97 29 81 4.96e-25 99.4
MsG0280006709.01.T01 AT1G07640 70.690 58 15 1 46 101 77 134 5.38e-25 102
MsG0280006709.01.T01 AT4G21050 66.129 62 20 1 48 108 26 87 6.47e-25 99.4
MsG0280006709.01.T01 AT1G07640 70.690 58 15 1 46 101 85 142 6.63e-25 102
MsG0280006709.01.T01 AT5G02460 73.214 56 14 1 45 99 94 149 6.91e-25 102
MsG0280006709.01.T01 AT1G21340 55.128 78 31 2 25 101 20 94 1.67e-24 99.4
MsG0280006709.01.T01 AT5G65590 61.111 72 24 2 29 99 27 95 1.81e-24 100
MsG0280006709.01.T01 AT2G46590 74.000 50 13 0 44 93 66 115 4.26e-24 100
MsG0280006709.01.T01 AT2G46590 74.000 50 13 0 44 93 78 127 4.83e-24 100
MsG0280006709.01.T01 AT3G52440 67.797 59 18 1 48 105 27 85 1.21e-23 96.7
MsG0280006709.01.T01 AT3G52440 68.966 58 17 1 48 104 46 103 1.71e-23 96.7
MsG0280006709.01.T01 AT4G00940 67.241 58 18 1 44 100 66 123 6.62e-23 95.9
MsG0280006709.01.T01 AT4G00940 67.241 58 18 1 44 100 66 123 6.62e-23 95.9
MsG0280006709.01.T01 AT4G00940 67.241 58 18 1 44 100 66 123 6.62e-23 95.9
MsG0280006709.01.T01 AT3G47500 76.923 52 11 1 48 98 112 163 7.06e-23 97.8
MsG0280006709.01.T01 AT5G62430 67.742 62 15 2 48 108 56 113 1.30e-22 95.1
MsG0280006709.01.T01 AT4G21040 64.286 56 20 0 48 103 27 82 1.54e-22 93.6
MsG0280006709.01.T01 AT1G47655 70.000 50 15 0 44 93 27 76 1.57e-22 92.8
MsG0280006709.01.T01 AT1G69570 72.222 54 14 1 46 98 132 185 2.08e-22 95.9
MsG0280006709.01.T01 AT5G62940 78.261 46 10 0 48 93 75 120 3.02e-22 95.1
MsG0280006709.01.T01 AT5G39660 75.000 52 12 1 48 98 140 191 3.50e-22 95.9
MsG0280006709.01.T01 AT5G39660 75.000 52 12 1 48 98 140 191 3.50e-22 95.9
MsG0280006709.01.T01 AT5G39660 75.000 52 12 1 48 98 140 191 3.50e-22 95.9
MsG0280006709.01.T01 AT1G26790 73.077 52 13 1 48 98 113 164 5.11e-22 94.4
MsG0280006709.01.T01 AT2G34140 68.519 54 16 1 46 98 58 111 6.01e-22 90.1
MsG0280006709.01.T01 AT1G29160 68.519 54 16 1 46 98 62 115 7.93e-22 90.1
MsG0280006709.01.T01 AT4G21080 60.714 56 22 0 48 103 27 82 1.53e-21 91.3
MsG0280006709.01.T01 AT4G21030 59.574 47 19 0 48 94 23 69 9.39e-14 68.6

Find 60 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGAGGATATTGATTCTT+TGG 0.256542 2:+5242405 MsG0280006709.01.T01:CDS
ATTACCTTCTGATTGATCTT+TGG 0.282882 2:-5242119 None:intergenic
TTTCTCATGGGAGGAGTCTT+TGG 0.293343 2:-5241731 None:intergenic
GAAGGTAATAATGAAGAGTT+TGG 0.377362 2:+5242133 MsG0280006709.01.T01:CDS
ATTCTGCCTGTTGGCATTTG+AGG 0.380271 2:-5242017 None:intergenic
TGGTGAAGAGTTTAAAATAA+TGG 0.381474 2:+5242267 MsG0280006709.01.T01:CDS
GGACTAAAGGTGGTACTCTA+AGG 0.389801 2:+5241888 MsG0280006709.01.T01:CDS
TCTTGCAAGCTCTGCAGAAA+TGG 0.390626 2:-5241859 None:intergenic
TTTGATCTTGCAACAAGGTT+TGG 0.402739 2:-5241697 None:intergenic
AATAATGAAGAGTTTGGTAT+TGG 0.406113 2:+5242139 MsG0280006709.01.T01:CDS
TCCATGCCACTACTTGTTGC+AGG 0.407180 2:-5242364 None:intergenic
GGCATTTGAGGTGGTGGTGG+AGG 0.410239 2:-5242005 None:intergenic
AGAATGGGAATATAAAGCTT+TGG 0.413450 2:-5242204 None:intergenic
GTTGGCATTTGAGGTGGTGG+TGG 0.415446 2:-5242008 None:intergenic
AAAGAGCTTGAGTTTGAGAA+TGG 0.415643 2:-5242220 None:intergenic
TCATCCAATGGATATAACTA+TGG 0.419434 2:+5242247 MsG0280006709.01.T01:CDS
CAACTGATCTAAATGTTCCT+TGG 0.420889 2:+5242431 MsG0280006709.01.T01:CDS
TTTCTAGTAGAGGTGTTGAT+TGG 0.423681 2:+5241672 MsG0280006709.01.T01:CDS
AACTGATCTAAATGTTCCTT+GGG 0.432000 2:+5242432 MsG0280006709.01.T01:CDS
GAGGTGGTGTTAATAGAAGT+TGG 0.432478 2:-5241965 None:intergenic
ATGTTCCTGTTGGTGGTGTT+AGG 0.438700 2:+5241912 MsG0280006709.01.T01:CDS
TTCTTCCTAACACCACCAAC+AGG 0.450348 2:-5241917 None:intergenic
TTCACCATAGTTATATCCAT+TGG 0.450485 2:-5242251 None:intergenic
GCATGGATATGTCAAACTAT+TGG 0.455144 2:+5242380 MsG0280006709.01.T01:CDS
GTATTTGTAGAGTCACATCT+TGG 0.457892 2:-5241794 None:intergenic
CTAAGGAATGTTCCTGTTGG+TGG 0.457905 2:+5241905 MsG0280006709.01.T01:CDS
GCAGAGCTTGCAAGAGACAT+TGG 0.471598 2:+5241867 MsG0280006709.01.T01:CDS
CCTGTTGGCATTTGAGGTGG+TGG 0.484699 2:-5242011 None:intergenic
CCACCACCTCAAATGCCAAC+AGG 0.506248 2:+5242011 MsG0280006709.01.T01:CDS
TGAAGAGTTTGGTATTGGTA+AGG 0.508499 2:+5242144 MsG0280006709.01.T01:CDS
TATGTCAAACTATTGGAGTT+GGG 0.508899 2:+5242387 MsG0280006709.01.T01:CDS
TGCAAGAGACATTGGACTAA+AGG 0.515682 2:+5241875 MsG0280006709.01.T01:CDS
AAGAGCTTGAGTTTGAGAAT+GGG 0.526214 2:-5242219 None:intergenic
ATATGTCAAACTATTGGAGT+TGG 0.531877 2:+5242386 MsG0280006709.01.T01:CDS
ATGCCAAGCACTAGTGGTAG+TGG 0.534649 2:+5242316 MsG0280006709.01.T01:CDS
GTGGCACTATTACACATCCA+TGG 0.536686 2:+5242335 MsG0280006709.01.T01:CDS
TTGGTACTCATCAGATTCTG+TGG 0.543797 2:-5242100 None:intergenic
TCTAAGCAAGTTTCTAGTAG+AGG 0.557594 2:+5241662 MsG0280006709.01.T01:CDS
GTTATTGTAGTAACAAAACT+TGG 0.560267 2:-5241816 None:intergenic
GGTGTTAATAGAAGTTGGAG+AGG 0.561058 2:-5241960 None:intergenic
CTGCCTGTTGGCATTTGAGG+TGG 0.562704 2:-5242014 None:intergenic
AGAGATTCATGCATAGAAGA+AGG 0.563751 2:-5242052 None:intergenic
ACCTGCAACAAGTAGTGGCA+TGG 0.573077 2:+5242363 MsG0280006709.01.T01:CDS
ACTCTAAGGAATGTTCCTGT+TGG 0.580863 2:+5241902 MsG0280006709.01.T01:CDS
GTGCCACTACCACTAGTGCT+TGG 0.582189 2:-5242319 None:intergenic
CTTGTTGCAGGTATCTCCCA+TGG 0.587087 2:-5242352 None:intergenic
GAGATACCTGCAACAAGTAG+TGG 0.600865 2:+5242358 MsG0280006709.01.T01:CDS
TGAAGAGTTTAAAATAATGG+AGG 0.607082 2:+5242270 MsG0280006709.01.T01:CDS
AGTGCAATGCCAAGCACTAG+TGG 0.615832 2:+5242310 MsG0280006709.01.T01:CDS
AGTACCAAAGATCAATCAGA+AGG 0.617584 2:+5242115 MsG0280006709.01.T01:CDS
TTCATGCATAGAAGAAGGTG+TGG 0.623493 2:-5242047 None:intergenic
TGGCACTATTACACATCCAT+GGG 0.627148 2:+5242336 MsG0280006709.01.T01:CDS
CAAGCTCTGCAGAAATGGCG+AGG 0.631289 2:-5241854 None:intergenic
AGCTCTTTAAGATCATCCAA+TGG 0.640870 2:+5242235 MsG0280006709.01.T01:CDS
CTTGTTGCAAGATCAAAACA+TGG 0.647907 2:+5241703 MsG0280006709.01.T01:CDS
GTACTCATCAGATTCTGTGG+TGG 0.648289 2:-5242097 None:intergenic
AAGAGACATTGGACTAAAGG+TGG 0.661565 2:+5241878 MsG0280006709.01.T01:CDS
GTCAAACTATTGGAGTTGGG+AGG 0.665707 2:+5242390 MsG0280006709.01.T01:CDS
GCAACAAAATCAGCAACTAG+AGG 0.669254 2:+5241760 MsG0280006709.01.T01:CDS
TTGATATCAGAATCATCCCA+AGG 0.669368 2:-5242448 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATAATGAAGAGTTTGGTAT+TGG + Chr2:5242139-5242158 MsG0280006709.01.T01:CDS 25.0%
! GTTATTGTAGTAACAAAACT+TGG - Chr2:5241819-5241838 None:intergenic 25.0%
!! TGAAGAGTTTAAAATAATGG+AGG + Chr2:5242270-5242289 MsG0280006709.01.T01:CDS 25.0%
!! TGGTGAAGAGTTTAAAATAA+TGG + Chr2:5242267-5242286 MsG0280006709.01.T01:CDS 25.0%
!!! AATATAAAGCTTTGGTTTTG+AGG - Chr2:5242199-5242218 None:intergenic 25.0%
AACTGATCTAAATGTTCCTT+GGG + Chr2:5242432-5242451 MsG0280006709.01.T01:CDS 30.0%
AGAATGGGAATATAAAGCTT+TGG - Chr2:5242207-5242226 None:intergenic 30.0%
ATATGTCAAACTATTGGAGT+TGG + Chr2:5242386-5242405 MsG0280006709.01.T01:CDS 30.0%
ATTACCTTCTGATTGATCTT+TGG - Chr2:5242122-5242141 None:intergenic 30.0%
GAAGGTAATAATGAAGAGTT+TGG + Chr2:5242133-5242152 MsG0280006709.01.T01:CDS 30.0%
TATGTCAAACTATTGGAGTT+GGG + Chr2:5242387-5242406 MsG0280006709.01.T01:CDS 30.0%
TCATCCAATGGATATAACTA+TGG + Chr2:5242247-5242266 MsG0280006709.01.T01:CDS 30.0%
TTCACCATAGTTATATCCAT+TGG - Chr2:5242254-5242273 None:intergenic 30.0%
AAAGAGCTTGAGTTTGAGAA+TGG - Chr2:5242223-5242242 None:intergenic 35.0%
AAGAGCTTGAGTTTGAGAAT+GGG - Chr2:5242222-5242241 None:intergenic 35.0%
AGAGATTCATGCATAGAAGA+AGG - Chr2:5242055-5242074 None:intergenic 35.0%
AGTACCAAAGATCAATCAGA+AGG + Chr2:5242115-5242134 MsG0280006709.01.T01:CDS 35.0%
CAACTGATCTAAATGTTCCT+TGG + Chr2:5242431-5242450 MsG0280006709.01.T01:CDS 35.0%
CTTGTTGCAAGATCAAAACA+TGG + Chr2:5241703-5241722 MsG0280006709.01.T01:CDS 35.0%
GCATGGATATGTCAAACTAT+TGG + Chr2:5242380-5242399 MsG0280006709.01.T01:CDS 35.0%
GTATTTGTAGAGTCACATCT+TGG - Chr2:5241797-5241816 None:intergenic 35.0%
TTGATATCAGAATCATCCCA+AGG - Chr2:5242451-5242470 None:intergenic 35.0%
TTTGATCTTGCAACAAGGTT+TGG - Chr2:5241700-5241719 None:intergenic 35.0%
! GGTGCTAATAGTAGTTTTTG+AGG - Chr2:5241987-5242006 None:intergenic 35.0%
!! AGCTCTTTAAGATCATCCAA+TGG + Chr2:5242235-5242254 MsG0280006709.01.T01:CDS 35.0%
!! GCTAATAGTAGTTTTTGAGG+TGG - Chr2:5241984-5242003 None:intergenic 35.0%
!! TCTAAGCAAGTTTCTAGTAG+AGG + Chr2:5241662-5241681 MsG0280006709.01.T01:CDS 35.0%
!! TGAAGAGTTTGGTATTGGTA+AGG + Chr2:5242144-5242163 MsG0280006709.01.T01:CDS 35.0%
!! TTGGGAGGATATTGATTCTT+TGG + Chr2:5242405-5242424 MsG0280006709.01.T01:CDS 35.0%
!! TTTCTAGTAGAGGTGTTGAT+TGG + Chr2:5241672-5241691 MsG0280006709.01.T01:CDS 35.0%
!!! AAGCTTTGGTTTTGAGGAAA+AGG - Chr2:5242193-5242212 None:intergenic 35.0%
!!! CATGTTTTGATCTTGCAACA+AGG - Chr2:5241705-5241724 None:intergenic 35.0%
!!! GGTTTTATTATTCTGCCTGT+TGG - Chr2:5242029-5242048 None:intergenic 35.0%
!!! TGTTGCTGTTGTTTTCTCAT+GGG - Chr2:5241746-5241765 None:intergenic 35.0%
!!! TTGTTGCTGTTGTTTTCTCA+TGG - Chr2:5241747-5241766 None:intergenic 35.0%
AAGAGACATTGGACTAAAGG+TGG + Chr2:5241878-5241897 MsG0280006709.01.T01:CDS 40.0%
GCAACAAAATCAGCAACTAG+AGG + Chr2:5241760-5241779 MsG0280006709.01.T01:CDS 40.0%
GGTGTTAATAGAAGTTGGAG+AGG - Chr2:5241963-5241982 None:intergenic 40.0%
TGCAAGAGACATTGGACTAA+AGG + Chr2:5241875-5241894 MsG0280006709.01.T01:CDS 40.0%
TGGCACTATTACACATCCAT+GGG + Chr2:5242336-5242355 MsG0280006709.01.T01:CDS 40.0%
TTCATGCATAGAAGAAGGTG+TGG - Chr2:5242050-5242069 None:intergenic 40.0%
TTCTGTGGTGGCAAAAAAGA+TGG - Chr2:5242088-5242107 None:intergenic 40.0%
TTGGTACTCATCAGATTCTG+TGG - Chr2:5242103-5242122 None:intergenic 40.0%
! ACTCTAAGGAATGTTCCTGT+TGG + Chr2:5241902-5241921 MsG0280006709.01.T01:CDS 40.0%
! GAGGTGGTGTTAATAGAAGT+TGG - Chr2:5241968-5241987 None:intergenic 40.0%
ATTCTGCCTGTTGGCATTTG+AGG - Chr2:5242020-5242039 None:intergenic 45.0%
CTAAGGAATGTTCCTGTTGG+TGG + Chr2:5241905-5241924 MsG0280006709.01.T01:CDS 45.0%
GAGATACCTGCAACAAGTAG+TGG + Chr2:5242358-5242377 MsG0280006709.01.T01:CDS 45.0%
GGACTAAAGGTGGTACTCTA+AGG + Chr2:5241888-5241907 MsG0280006709.01.T01:CDS 45.0%
GTACTCATCAGATTCTGTGG+TGG - Chr2:5242100-5242119 None:intergenic 45.0%
GTCAAACTATTGGAGTTGGG+AGG + Chr2:5242390-5242409 MsG0280006709.01.T01:CDS 45.0%
GTGGCACTATTACACATCCA+TGG + Chr2:5242335-5242354 MsG0280006709.01.T01:CDS 45.0%
TCTTGCAAGCTCTGCAGAAA+TGG - Chr2:5241862-5241881 None:intergenic 45.0%
TGTGGTGGCAAAAAAGATGG+TGG - Chr2:5242085-5242104 None:intergenic 45.0%
TTCTTCCTAACACCACCAAC+AGG - Chr2:5241920-5241939 None:intergenic 45.0%
TTTCTCATGGGAGGAGTCTT+TGG - Chr2:5241734-5241753 None:intergenic 45.0%
!! ATGTTCCTGTTGGTGGTGTT+AGG + Chr2:5241912-5241931 MsG0280006709.01.T01:CDS 45.0%
!!! TGCTGTTGTTTTCTCATGGG+AGG - Chr2:5241743-5241762 None:intergenic 45.0%
ACCTGCAACAAGTAGTGGCA+TGG + Chr2:5242363-5242382 MsG0280006709.01.T01:CDS 50.0%
AGTGCAATGCCAAGCACTAG+TGG + Chr2:5242310-5242329 MsG0280006709.01.T01:CDS 50.0%
ATGCCAAGCACTAGTGGTAG+TGG + Chr2:5242316-5242335 MsG0280006709.01.T01:CDS 50.0%
CTTGTTGCAGGTATCTCCCA+TGG - Chr2:5242355-5242374 None:intergenic 50.0%
GCAGAGCTTGCAAGAGACAT+TGG + Chr2:5241867-5241886 MsG0280006709.01.T01:CDS 50.0%
! TCCATGCCACTACTTGTTGC+AGG - Chr2:5242367-5242386 None:intergenic 50.0%
CAAGCTCTGCAGAAATGGCG+AGG - Chr2:5241857-5241876 None:intergenic 55.0%
CCACCACCTCAAATGCCAAC+AGG + Chr2:5242011-5242030 MsG0280006709.01.T01:CDS 55.0%
CTGCCTGTTGGCATTTGAGG+TGG - Chr2:5242017-5242036 None:intergenic 55.0%
! CCTGTTGGCATTTGAGGTGG+TGG - Chr2:5242014-5242033 None:intergenic 55.0%
! GTGCCACTACCACTAGTGCT+TGG - Chr2:5242322-5242341 None:intergenic 55.0%
! GTTGGCATTTGAGGTGGTGG+TGG - Chr2:5242011-5242030 None:intergenic 55.0%
!! GGCATTTGAGGTGGTGGTGG+AGG - Chr2:5242008-5242027 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 5241650 5242477 5241650 ID=MsG0280006709.01;Name=MsG0280006709.01
Chr2 mRNA 5241650 5242477 5241650 ID=MsG0280006709.01.T01;Parent=MsG0280006709.01;Name=MsG0280006709.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|275
Chr2 exon 5241650 5242477 5241650 ID=MsG0280006709.01.T01:exon:2075;Parent=MsG0280006709.01.T01
Chr2 CDS 5241650 5242477 5241650 ID=MsG0280006709.01.T01:cds;Parent=MsG0280006709.01.T01
Gene Sequence

>MsG0280006709.01.T01

ATGGGCTTGAGTTCTAAGCAAGTTTCTAGTAGAGGTGTTGATTGGAACCAAACCTTGTTGCAAGATCAAAACATGGAACTTCCAAAGACTCCTCCCATGAGAAAACAACAGCAACAAAATCAGCAACTAGAGGCAGTGAATTGTCCAAGATGTGACTCTACAAATACCAAGTTTTGTTACTACAATAACTATAACAAGTCTCAACCTCGCCATTTCTGCAGAGCTTGCAAGAGACATTGGACTAAAGGTGGTACTCTAAGGAATGTTCCTGTTGGTGGTGTTAGGAAGAATAAGAGAGTCAAGATATCAACCTCTCCAACTTCTATTAACACCACCTCAAAAACTACTATTAGCACCTCCACCACCACCTCAAATGCCAACAGGCAGAATAATAAAACCACACCTTCTTCTATGCATGAATCTCTTATTCATCCACCATCTTTTTTGCCACCACAGAATCTGATGAGTACCAAAGATCAATCAGAAGGTAATAATGAAGAGTTTGGTATTGGTAAGGACATGTTTCTGAGTTCATCTATGCCTTTTCCTCAAAACCAAAGCTTTATATTCCCATTCTCAAACTCAAGCTCTTTAAGATCATCCAATGGATATAACTATGGTGAAGAGTTTAAAATAATGGAGGAGTCAACTATTAACAACAGTGCAATGCCAAGCACTAGTGGTAGTGGCACTATTACACATCCATGGGAGATACCTGCAACAAGTAGTGGCATGGATATGTCAAACTATTGGAGTTGGGAGGATATTGATTCTTTGGTCTCAACTGATCTAAATGTTCCTTGGGATGATTCTGATATCAAACCTTGA
Protein sequence

>MsG0280006709.01.T01

MGLSSKQVSSRGVDWNQTLLQDQNMELPKTPPMRKQQQQNQQLEAVNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKRVKISTSPTSINTTSKTTISTSTTTSNANRQNNKTTPSSMHESLIHPPSFLPPQNLMSTKDQSEGNNEEFGIGKDMFLSSSMPFPQNQSFIFPFSNSSSLRSSNGYNYGEEFKIMEESTINNSAMPSTSGSGTITHPWEIPATSSGMDMSNYWSWEDIDSLVSTDLNVPWDDSDIKP*