Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007399.01.T01 | XP_004486316.1 | 76.119 | 536 | 82 | 7 | 1 | 491 | 306 | 840 | 0 | 808 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007399.01.T01 | Q9SSE9 | 46.667 | 495 | 206 | 10 | 31 | 481 | 410 | 890 | 6.75E-132 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007399.01.T01 | A0A1S2XAI5 | 76.119 | 536 | 82 | 7 | 1 | 491 | 306 | 840 | 0.0 | 808 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0280007399.01.T01 | TR | Jumonji |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007399.01.T01 | MTR_2g024270 | 69.961 | 516 | 119 | 6 | 1 | 491 | 322 | 826 | 0.0 | 723 |
| MsG0280007399.01.T01 | MTR_2g024140 | 69.020 | 510 | 110 | 5 | 1 | 485 | 202 | 688 | 0.0 | 684 |
| MsG0280007399.01.T01 | MTR_4g132540 | 64.880 | 541 | 132 | 10 | 1 | 488 | 335 | 870 | 0.0 | 675 |
| MsG0280007399.01.T01 | MTR_2g024240 | 63.333 | 450 | 100 | 7 | 1 | 447 | 1 | 388 | 0.0 | 538 |
| MsG0280007399.01.T01 | MTR_1g069565 | 46.479 | 568 | 214 | 13 | 1 | 482 | 316 | 879 | 7.51e-153 | 458 |
| MsG0280007399.01.T01 | MTR_1g114150 | 47.407 | 540 | 220 | 11 | 1 | 482 | 515 | 1048 | 3.71e-151 | 458 |
| MsG0280007399.01.T01 | MTR_1g114130 | 47.232 | 542 | 222 | 11 | 1 | 482 | 499 | 1036 | 4.21e-148 | 451 |
| MsG0280007399.01.T01 | MTR_5g065200 | 48.780 | 533 | 205 | 17 | 3 | 482 | 315 | 832 | 2.87e-145 | 437 |
| MsG0280007399.01.T01 | MTR_1g114070 | 44.963 | 536 | 231 | 10 | 1 | 482 | 397 | 922 | 1.01e-139 | 427 |
| MsG0280007399.01.T01 | MTR_5g047620 | 44.424 | 556 | 227 | 14 | 1 | 482 | 248 | 795 | 1.73e-136 | 414 |
| MsG0280007399.01.T01 | MTR_1g069565 | 40.640 | 625 | 224 | 15 | 1 | 482 | 316 | 936 | 9.88e-132 | 405 |
| MsG0280007399.01.T01 | MTR_0020s0100 | 42.614 | 528 | 215 | 17 | 1 | 467 | 191 | 691 | 1.37e-112 | 349 |
| MsG0280007399.01.T01 | MTR_1g114150 | 41.067 | 431 | 192 | 10 | 1 | 375 | 515 | 939 | 4.02e-92 | 300 |
| MsG0280007399.01.T01 | MTR_1g083120 | 33.652 | 523 | 268 | 10 | 35 | 485 | 379 | 894 | 4.47e-92 | 300 |
| MsG0280007399.01.T01 | MTR_1g083120 | 33.652 | 523 | 268 | 10 | 35 | 485 | 396 | 911 | 6.67e-92 | 300 |
| MsG0280007399.01.T01 | MTR_8g465700 | 72.222 | 162 | 39 | 2 | 113 | 274 | 22 | 177 | 2.90e-77 | 243 |
| MsG0280007399.01.T01 | MTR_1g083120 | 33.261 | 463 | 230 | 10 | 35 | 425 | 379 | 834 | 1.97e-76 | 256 |
| MsG0280007399.01.T01 | MTR_7g117445 | 42.581 | 310 | 137 | 5 | 35 | 304 | 358 | 666 | 2.32e-76 | 257 |
| MsG0280007399.01.T01 | MTR_7g117445 | 66.304 | 92 | 29 | 1 | 334 | 423 | 774 | 865 | 1.21e-31 | 129 |
| MsG0280007399.01.T01 | MTR_1g083120 | 33.047 | 466 | 233 | 10 | 32 | 425 | 376 | 834 | 2.69e-76 | 256 |
| MsG0280007399.01.T01 | MTR_7g117445 | 42.581 | 310 | 137 | 5 | 35 | 304 | 358 | 666 | 3.08e-76 | 257 |
| MsG0280007399.01.T01 | MTR_7g117445 | 63.399 | 153 | 54 | 1 | 334 | 484 | 774 | 926 | 1.35e-56 | 202 |
| MsG0280007399.01.T01 | MTR_7g117445 | 42.581 | 310 | 137 | 5 | 35 | 304 | 358 | 666 | 3.41e-76 | 257 |
| MsG0280007399.01.T01 | MTR_7g117445 | 63.399 | 153 | 54 | 1 | 334 | 484 | 774 | 926 | 1.50e-56 | 202 |
| MsG0280007399.01.T01 | MTR_7g117445 | 42.581 | 310 | 137 | 5 | 35 | 304 | 358 | 666 | 4.73e-76 | 257 |
| MsG0280007399.01.T01 | MTR_7g117445 | 63.399 | 153 | 54 | 1 | 334 | 484 | 774 | 926 | 1.77e-56 | 202 |
| MsG0280007399.01.T01 | MTR_1g008060 | 44.660 | 309 | 128 | 6 | 38 | 307 | 1059 | 1363 | 5.75e-70 | 243 |
| MsG0280007399.01.T01 | MTR_1g008060 | 60.843 | 166 | 60 | 2 | 322 | 485 | 1536 | 1698 | 2.90e-55 | 200 |
| MsG0280007399.01.T01 | MTR_1g008060 | 44.660 | 309 | 128 | 6 | 38 | 307 | 1050 | 1354 | 7.56e-70 | 243 |
| MsG0280007399.01.T01 | MTR_1g008060 | 60.843 | 166 | 60 | 2 | 322 | 485 | 1527 | 1689 | 3.46e-55 | 199 |
| MsG0280007399.01.T01 | MTR_2g011630 | 31.387 | 548 | 268 | 16 | 36 | 484 | 174 | 712 | 7.36e-66 | 226 |
| MsG0280007399.01.T01 | MTR_2g011630 | 31.387 | 548 | 268 | 16 | 36 | 484 | 206 | 744 | 1.55e-65 | 225 |
| MsG0280007399.01.T01 | MTR_2g011630 | 31.387 | 548 | 268 | 16 | 36 | 484 | 418 | 956 | 3.77e-64 | 224 |
| MsG0280007399.01.T01 | MTR_8g465720 | 57.447 | 188 | 36 | 4 | 306 | 490 | 18 | 164 | 1.26e-61 | 199 |
| MsG0280007399.01.T01 | MTR_0295s0020 | 49.112 | 169 | 79 | 1 | 153 | 314 | 12 | 180 | 9.39e-47 | 160 |
| MsG0280007399.01.T01 | MTR_4g091520 | 33.550 | 307 | 157 | 5 | 37 | 302 | 683 | 983 | 3.90e-43 | 164 |
| MsG0280007399.01.T01 | MTR_4g091520 | 33.550 | 307 | 157 | 5 | 37 | 302 | 648 | 948 | 4.10e-43 | 164 |
| MsG0280007399.01.T01 | MTR_4g091520 | 33.550 | 307 | 157 | 5 | 37 | 302 | 718 | 1018 | 5.04e-43 | 164 |
| MsG0280007399.01.T01 | MTR_4g091520 | 33.550 | 307 | 157 | 5 | 37 | 302 | 718 | 1018 | 5.46e-43 | 164 |
| MsG0280007399.01.T01 | MTR_4g091520 | 47.403 | 154 | 78 | 2 | 333 | 484 | 1126 | 1278 | 2.69e-37 | 147 |
| MsG0280007399.01.T01 | MTR_8g013920 | 45.283 | 159 | 70 | 5 | 187 | 343 | 40 | 183 | 1.66e-31 | 120 |
| MsG0280007399.01.T01 | MTR_5g031220 | 40.000 | 85 | 45 | 3 | 179 | 260 | 5 | 86 | 2.60e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007399.01.T01 | AT1G11950 | 56.455 | 519 | 181 | 10 | 2 | 485 | 363 | 871 | 0.0 | 574 |
| MsG0280007399.01.T01 | AT1G11950 | 56.455 | 519 | 181 | 10 | 2 | 485 | 363 | 871 | 0.0 | 574 |
| MsG0280007399.01.T01 | AT1G62310 | 57.371 | 502 | 175 | 7 | 1 | 465 | 378 | 877 | 0.0 | 558 |
| MsG0280007399.01.T01 | AT1G11950 | 53.898 | 449 | 162 | 10 | 2 | 415 | 363 | 801 | 2.02e-156 | 464 |
| MsG0280007399.01.T01 | AT3G07610 | 46.667 | 495 | 206 | 10 | 31 | 481 | 410 | 890 | 6.89e-133 | 410 |
| MsG0280007399.01.T01 | AT4G00990 | 40.642 | 561 | 222 | 10 | 35 | 488 | 279 | 835 | 5.84e-127 | 389 |
| MsG0280007399.01.T01 | AT3G07610 | 44.163 | 514 | 213 | 11 | 31 | 481 | 410 | 912 | 2.28e-124 | 388 |
| MsG0280007399.01.T01 | AT4G00990 | 38.889 | 504 | 197 | 10 | 35 | 431 | 279 | 778 | 2.62e-102 | 323 |
| MsG0280007399.01.T01 | AT4G00990 | 39.315 | 496 | 190 | 10 | 35 | 423 | 279 | 770 | 2.77e-101 | 321 |
| MsG0280007399.01.T01 | AT1G09060 | 33.140 | 516 | 265 | 13 | 35 | 485 | 393 | 893 | 1.41e-75 | 255 |
| MsG0280007399.01.T01 | AT1G09060 | 33.140 | 516 | 265 | 13 | 35 | 485 | 393 | 893 | 1.41e-75 | 255 |
| MsG0280007399.01.T01 | AT1G09060 | 33.140 | 516 | 265 | 13 | 35 | 485 | 407 | 907 | 1.41e-75 | 256 |
| MsG0280007399.01.T01 | AT1G09060 | 33.140 | 516 | 265 | 13 | 35 | 485 | 407 | 907 | 1.41e-75 | 256 |
| MsG0280007399.01.T01 | AT4G21430 | 34.063 | 411 | 229 | 10 | 113 | 489 | 517 | 919 | 1.38e-63 | 222 |
| MsG0280007399.01.T01 | AT3G07610 | 40.070 | 287 | 121 | 7 | 31 | 275 | 410 | 687 | 3.35e-55 | 197 |
Find 90 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTTAGATGCATATTTA+AGG | 0.171830 | 2:-14926028 | MsG0280007399.01.T01:CDS |
| CCACAACCTCCAAGTTCTTT+TGG | 0.207866 | 2:+14927484 | None:intergenic |
| CTGTTATTAGAAAATTAAAA+AGG | 0.230359 | 2:-14926208 | MsG0280007399.01.T01:CDS |
| AAAAGTATGCCTAAATTCTT+TGG | 0.242870 | 2:+14925998 | None:intergenic |
| GAGAGCATTGTGCGCAAATT+TGG | 0.252466 | 2:-14927165 | MsG0280007399.01.T01:CDS |
| CAGAAACTGGTGGTGCTCTT+TGG | 0.271763 | 2:-14926076 | MsG0280007399.01.T01:CDS |
| ACATGTCATAAAGCCTGATT+TGG | 0.301815 | 2:-14926475 | MsG0280007399.01.T01:CDS |
| ATAGACCCCTTGGAGATTAA+TGG | 0.305271 | 2:-14926140 | MsG0280007399.01.T01:CDS |
| TTGTGGCTGTGGTTGTGTTA+TGG | 0.319953 | 2:-14927467 | MsG0280007399.01.T01:CDS |
| TTGTGCGCAAATTTGGCTTC+AGG | 0.324597 | 2:-14927158 | MsG0280007399.01.T01:CDS |
| AGAAACTGGTGGTGCTCTTT+GGG | 0.329119 | 2:-14926075 | MsG0280007399.01.T01:CDS |
| GGAAACACTCCAAAGAATTT+AGG | 0.337467 | 2:-14926007 | MsG0280007399.01.T01:CDS |
| CACAAAACTTCACTGTGATA+TGG | 0.367632 | 2:-14926394 | MsG0280007399.01.T01:CDS |
| CTTCATGATATACTGAGCTT+TGG | 0.368964 | 2:+14927399 | None:intergenic |
| AAATCAGATATTCTCCCATT+TGG | 0.371858 | 2:+14927427 | None:intergenic |
| ATCACTATTAGCATTCCATT+TGG | 0.401903 | 2:+14927525 | None:intergenic |
| AGGTTTGAGTTGGGAGCCTA+TGG | 0.429318 | 2:-14927195 | MsG0280007399.01.T01:CDS |
| TAATATAGTACCTGTTCAAC+TGG | 0.429527 | 2:+14925969 | None:intergenic |
| CTGAAACGCATGCTTCCAAA+TGG | 0.431339 | 2:-14927442 | MsG0280007399.01.T01:CDS |
| CTTCTAATTCTTGTACAGCT+TGG | 0.439855 | 2:+14925235 | None:intergenic |
| GTTGGGAGCCTATGGTTACT+TGG | 0.443800 | 2:-14927187 | MsG0280007399.01.T01:CDS |
| TGACCTTGAGATTTCTGACT+TGG | 0.453559 | 2:+14925646 | None:intergenic |
| TTGAAGGTGTCGAAACTCTT+CGG | 0.459153 | 2:+14925441 | None:intergenic |
| CAAATTCTTCAAAGGTTACA+AGG | 0.462776 | 2:-14926676 | MsG0280007399.01.T01:CDS |
| TGCTCAAAAGAAACAGAAAC+TGG | 0.463190 | 2:-14926089 | MsG0280007399.01.T01:CDS |
| TGGACATTTGAGCAGAAACT+TGG | 0.466489 | 2:-14925702 | MsG0280007399.01.T01:CDS |
| AACAAGGGACAGGTTTGAGT+TGG | 0.470587 | 2:-14927205 | MsG0280007399.01.T01:CDS |
| GCAACTTTGCAGCAAGGTTG+AGG | 0.472874 | 2:+14926502 | None:intergenic |
| ACAAGGGACAGGTTTGAGTT+GGG | 0.475477 | 2:-14927204 | MsG0280007399.01.T01:CDS |
| CCAAAAGAACTTGGAGGTTG+TGG | 0.477429 | 2:-14927484 | MsG0280007399.01.T01:CDS |
| GTATCAAAATTTGTTGGTAG+AGG | 0.479805 | 2:+14927580 | None:intergenic |
| GGATCGCTATACTCTTGAAA+TGG | 0.490375 | 2:+14926537 | None:intergenic |
| AGTAAAAGCCATCGATTGCT+TGG | 0.495169 | 2:-14927111 | MsG0280007399.01.T01:CDS |
| CAAATTTCCATTAATCTCCA+AGG | 0.503218 | 2:+14926133 | None:intergenic |
| GAACTTGGAGGTTGTGGCTG+TGG | 0.508394 | 2:-14927478 | MsG0280007399.01.T01:CDS |
| GAGTATAGCGATCCTCGAGC+TGG | 0.509998 | 2:-14926528 | MsG0280007399.01.T01:CDS |
| GATGTTCTTAAACAAGGGAC+AGG | 0.511480 | 2:-14927215 | MsG0280007399.01.T01:CDS |
| AACACTCGCAAATTCTTCAA+AGG | 0.513485 | 2:-14926684 | MsG0280007399.01.T01:CDS |
| ATGTTGAGACATTCACCAAA+TGG | 0.520138 | 2:-14927540 | MsG0280007399.01.T01:CDS |
| TTTCATTAGATGCTCATCAC+TGG | 0.524868 | 2:-14925211 | MsG0280007399.01.T01:CDS |
| AAGTTTCTGCTCAAATGTCC+AGG | 0.526250 | 2:+14925704 | None:intergenic |
| AGATGCTCAAGCTAAAAGAT+TGG | 0.532972 | 2:-14926623 | MsG0280007399.01.T01:CDS |
| CATGTCATAAAGCCTGATTT+GGG | 0.535555 | 2:-14926474 | MsG0280007399.01.T01:CDS |
| ATCAAAGAAGAACTTGGAAG+AGG | 0.537226 | 2:-14926426 | MsG0280007399.01.T01:CDS |
| AAATTTCCATTAATCTCCAA+GGG | 0.542541 | 2:+14926134 | None:intergenic |
| TTTGATACAAACAATTCAGA+GGG | 0.542912 | 2:-14927565 | MsG0280007399.01.T01:CDS |
| TATGGAATCAAAGAAGAACT+TGG | 0.544627 | 2:-14926432 | MsG0280007399.01.T01:CDS |
| TTGAGATTTCTGACTTGGTG+TGG | 0.545685 | 2:+14925651 | None:intergenic |
| GAAGCAGTATTTATTCCTGC+TGG | 0.549657 | 2:-14925678 | MsG0280007399.01.T01:CDS |
| AAATCAGGCTTTATGACATG+TGG | 0.556215 | 2:+14926477 | None:intergenic |
| TTCGTGATGTTCTTAAACAA+GGG | 0.556466 | 2:-14927220 | MsG0280007399.01.T01:CDS |
| AAATGGAATGCTAATAGTGA+TGG | 0.557384 | 2:-14927523 | MsG0280007399.01.T01:CDS |
| TCAAGATAATATAGACCCCT+TGG | 0.558942 | 2:-14926150 | MsG0280007399.01.T01:CDS |
| TTCTTCAAAGGTTACAAGGA+GGG | 0.559654 | 2:-14926672 | MsG0280007399.01.T01:CDS |
| GTTCGTGATGTTCTTAAACA+AGG | 0.566626 | 2:-14927221 | MsG0280007399.01.T01:CDS |
| TGAGCATAAGAAGAAGCTAA+AGG | 0.568843 | 2:-14925829 | MsG0280007399.01.T01:CDS |
| ACTTGGTGTGGACATCCAGC+AGG | 0.572126 | 2:+14925663 | None:intergenic |
| GAATGTGCTCCAAAAGAACT+TGG | 0.573014 | 2:-14927493 | MsG0280007399.01.T01:CDS |
| TAAGGTCACTTGACAATGGA+CGG | 0.574775 | 2:+14927299 | None:intergenic |
| TGAAACGCATGCTTCCAAAT+GGG | 0.579984 | 2:-14927441 | MsG0280007399.01.T01:CDS |
| AGAGGTTATGATTACATGCA+TGG | 0.580101 | 2:-14927610 | MsG0280007399.01.T01:CDS |
| TCAATTACAGGTGTAGAACC+TGG | 0.581857 | 2:-14925722 | MsG0280007399.01.T01:intron |
| AATCAGGCTTTATGACATGT+GGG | 0.582306 | 2:+14926478 | None:intergenic |
| AACATTGGTCATGAATAGGA+TGG | 0.583998 | 2:+14925865 | None:intergenic |
| TTGTTTGTATCAAAATTTGT+TGG | 0.593330 | 2:+14927574 | None:intergenic |
| TTTATAAGGTCACTTGACAA+TGG | 0.594701 | 2:+14927295 | None:intergenic |
| GGGCACATAAGGCTCAAGAT+CGG | 0.601082 | 2:-14926187 | MsG0280007399.01.T01:CDS |
| AGATCTTCAAACTTGTCAGA+AGG | 0.605347 | 2:+14926597 | None:intergenic |
| TAAGGCTCAAGATCGGAAAG+AGG | 0.605735 | 2:-14926180 | MsG0280007399.01.T01:CDS |
| CGATTGCTTGGCTAGTTGTG+AGG | 0.606450 | 2:-14927099 | MsG0280007399.01.T01:intron |
| AATGCTCTCCAAGTAACCAT+AGG | 0.613712 | 2:+14927179 | None:intergenic |
| AAGGCTCAAGATCGGAAAGA+GGG | 0.615328 | 2:-14926179 | MsG0280007399.01.T01:CDS |
| ACAACTAGCCAAGCAATCGA+TGG | 0.616859 | 2:+14927103 | None:intergenic |
| ACTCTTGAAATGGCAAGCAA+CGG | 0.622659 | 2:+14926547 | None:intergenic |
| TCAGGCTTTATGACATGTGG+GGG | 0.630295 | 2:+14926480 | None:intergenic |
| TCTTCAAACTTGTCAGAAGG+TGG | 0.634708 | 2:+14926600 | None:intergenic |
| ATCAGGCTTTATGACATGTG+GGG | 0.635513 | 2:+14926479 | None:intergenic |
| TGTGCTCCAAAAGAACTTGG+AGG | 0.649295 | 2:-14927490 | MsG0280007399.01.T01:CDS |
| ACACCAAGTCAGAAATCTCA+AGG | 0.651808 | 2:-14925649 | MsG0280007399.01.T01:intron |
| TCACTGTGATATGGCAGATG+CGG | 0.655612 | 2:-14926385 | MsG0280007399.01.T01:intron |
| ATTTGGTGAATGTCTCAACA+TGG | 0.656800 | 2:+14927542 | None:intergenic |
| ATTCTTCAAAGGTTACAAGG+AGG | 0.679618 | 2:-14926673 | MsG0280007399.01.T01:CDS |
| AACGGATAAACTCATCACAA+TGG | 0.689117 | 2:+14926565 | None:intergenic |
| AGGTTGAGGATTCCAGCTCG+AGG | 0.693598 | 2:+14926516 | None:intergenic |
| AATTTCCATTAATCTCCAAG+GGG | 0.708604 | 2:+14926135 | None:intergenic |
| TCAAAAGAAACAGAAACTGG+TGG | 0.714549 | 2:-14926086 | MsG0280007399.01.T01:CDS |
| ACACCTTCAAAAGAATCACA+AGG | 0.716617 | 2:-14925428 | MsG0280007399.01.T01:CDS |
| ATAAACTCATCACAATGGCG+CGG | 0.720209 | 2:+14926570 | None:intergenic |
| GGCAAGAGAAGACAAACTTG+AGG | 0.724823 | 2:-14925407 | MsG0280007399.01.T01:intron |
| GGTTATGATTACATGCATGG+TGG | 0.788197 | 2:-14927607 | MsG0280007399.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTATTAGAAAATTAAAAA+GGG | - | Chr2:14926630-14926649 | MsG0280007399.01.T01:CDS | 10.0% |
| !!! | AATTGATTGATATTTTTTAA+TGG | - | Chr2:14927545-14927564 | MsG0280007399.01.T01:CDS | 10.0% |
| !! | AACTTTATATGCATATATTT+GGG | - | Chr2:14926092-14926111 | MsG0280007399.01.T01:CDS | 15.0% |
| !! | CTGTTATTAGAAAATTAAAA+AGG | - | Chr2:14926629-14926648 | MsG0280007399.01.T01:CDS | 15.0% |
| !! | TAACTTTATATGCATATATT+TGG | - | Chr2:14926091-14926110 | MsG0280007399.01.T01:CDS | 15.0% |
| !!! | AGTAAACTTCTTTTTATATA+TGG | - | Chr2:14925796-14925815 | MsG0280007399.01.T01:intron | 15.0% |
| !!! | TCAAATAGCATTTTTTTATA+AGG | + | Chr2:14925559-14925578 | None:intergenic | 15.0% |
| !! | AAAAGTTAGATGCATATTTA+AGG | - | Chr2:14926809-14926828 | MsG0280007399.01.T01:intron | 20.0% |
| !! | AAGTTTCAATACAAAAATAG+AGG | - | Chr2:14925209-14925228 | MsG0280007399.01.T01:CDS | 20.0% |
| !! | CAATAGTCAAATAAAAACAT+TGG | + | Chr2:14926990-14927009 | None:intergenic | 20.0% |
| !! | GAAGAACATATAAAAATCTT+TGG | - | Chr2:14926187-14926206 | MsG0280007399.01.T01:CDS | 20.0% |
| !! | GTAGAAAAAATACATGTATT+TGG | - | Chr2:14927253-14927272 | MsG0280007399.01.T01:intron | 20.0% |
| !! | TAGAAACAATAAAGTAAATG+TGG | + | Chr2:14926531-14926550 | None:intergenic | 20.0% |
| !! | TTGTTTGTATCAAAATTTGT+TGG | + | Chr2:14925266-14925285 | None:intergenic | 20.0% |
| !!! | AAAAACACTTTTAAAGCATA+GGG | + | Chr2:14926008-14926027 | None:intergenic | 20.0% |
| !!! | AATTAGATTTTGAAGCTAAA+TGG | + | Chr2:14926049-14926068 | None:intergenic | 20.0% |
| !!! | TTTTGTTCAATAAATTTGAC+AGG | - | Chr2:14926555-14926574 | MsG0280007399.01.T01:CDS | 20.0% |
| !!! | TTTTTTTTTAGTAAGTGAGT+CGG | + | Chr2:14925888-14925907 | None:intergenic | 20.0% |
| ! | AAATTTCCATTAATCTCCAA+GGG | + | Chr2:14926706-14926725 | None:intergenic | 25.0% |
| ! | AACATATAAAAATCTTTGGC+CGG | - | Chr2:14926191-14926210 | MsG0280007399.01.T01:CDS | 25.0% |
| ! | CAAAAGAAAGAAAGACAAAA+AGG | + | Chr2:14927483-14927502 | None:intergenic | 25.0% |
| ! | CCAAAAACTTATATTGCTTA+TGG | - | Chr2:14926387-14926406 | MsG0280007399.01.T01:CDS | 25.0% |
| ! | TAAAAACATTGGTCATGAAT+AGG | + | Chr2:14926979-14926998 | None:intergenic | 25.0% |
| ! | TTTGATACAAACAATTCAGA+GGG | - | Chr2:14925272-14925291 | MsG0280007399.01.T01:intron | 25.0% |
| !! | AAAAGTATGCCTAAATTCTT+TGG | + | Chr2:14926842-14926861 | None:intergenic | 25.0% |
| !! | AAAATTAAAAAGGGCACATA+AGG | - | Chr2:14926639-14926658 | MsG0280007399.01.T01:CDS | 25.0% |
| !! | AACTTCTTTGTTGGTTAATT+AGG | - | Chr2:14926945-14926964 | MsG0280007399.01.T01:intron | 25.0% |
| !! | CCATAAGCAATATAAGTTTT+TGG | + | Chr2:14926390-14926409 | None:intergenic | 25.0% |
| !! | GTACATTTAAAGTCATGTTT+CGG | - | Chr2:14925970-14925989 | MsG0280007399.01.T01:intron | 25.0% |
| !! | TACATTTAAAGTCATGTTTC+GGG | - | Chr2:14925971-14925990 | MsG0280007399.01.T01:intron | 25.0% |
| !! | TATTTGAATTTCGAAAGCAT+TGG | - | Chr2:14925572-14925591 | MsG0280007399.01.T01:intron | 25.0% |
| !! | TTTTGAATTGTGTAAGTCTA+TGG | - | Chr2:14925823-14925842 | MsG0280007399.01.T01:intron | 25.0% |
| !! | TTTTGATACAAACAATTCAG+AGG | - | Chr2:14925271-14925290 | MsG0280007399.01.T01:intron | 25.0% |
| !!! | GAAAAACACTTTTAAAGCAT+AGG | + | Chr2:14926009-14926028 | None:intergenic | 25.0% |
| !!! | TATTTACGTTTTATTCCTTC+AGG | - | Chr2:14925944-14925963 | MsG0280007399.01.T01:intron | 25.0% |
| AAATCAGATATTCTCCCATT+TGG | + | Chr2:14925413-14925432 | None:intergenic | 30.0% | |
| AAATGGAATGCTAATAGTGA+TGG | - | Chr2:14925314-14925333 | MsG0280007399.01.T01:intron | 30.0% | |
| AAGTCTATGGCATATTAATG+AGG | - | Chr2:14925836-14925855 | MsG0280007399.01.T01:CDS | 30.0% | |
| AATTTCCATTAATCTCCAAG+GGG | + | Chr2:14926705-14926724 | None:intergenic | 30.0% | |
| AGAACATCACGAACTATAAT+TGG | + | Chr2:14925610-14925629 | None:intergenic | 30.0% | |
| ATCACTATTAGCATTCCATT+TGG | + | Chr2:14925315-14925334 | None:intergenic | 30.0% | |
| CAAATTCTTCAAAGGTTACA+AGG | - | Chr2:14926161-14926180 | MsG0280007399.01.T01:CDS | 30.0% | |
| CAAATTTCCATTAATCTCCA+AGG | + | Chr2:14926707-14926726 | None:intergenic | 30.0% | |
| CATGACTCTTAATCAATTAC+AGG | - | Chr2:14927103-14927122 | MsG0280007399.01.T01:CDS | 30.0% | |
| TAACCAACAAAGAAGTTAGT+GGG | + | Chr2:14926942-14926961 | None:intergenic | 30.0% | |
| TAATATAGTACCTGTTCAAC+TGG | + | Chr2:14926871-14926890 | None:intergenic | 30.0% | |
| TATGGAATCAAAGAAGAACT+TGG | - | Chr2:14926405-14926424 | MsG0280007399.01.T01:CDS | 30.0% | |
| TGGTTGAAAAGGATGAATAT+TGG | + | Chr2:14926118-14926137 | None:intergenic | 30.0% | |
| TTAACCAACAAAGAAGTTAG+TGG | + | Chr2:14926943-14926962 | None:intergenic | 30.0% | |
| TTCGTGATGTTCTTAAACAA+GGG | - | Chr2:14925617-14925636 | MsG0280007399.01.T01:intron | 30.0% | |
| TTTATAAGGTCACTTGACAA+TGG | + | Chr2:14925545-14925564 | None:intergenic | 30.0% | |
| !! | ATTTTCTGGTGAAACAAAGT+CGG | + | Chr2:14927354-14927373 | None:intergenic | 30.0% |
| !! | GTATCAAAATTTGTTGGTAG+AGG | + | Chr2:14925260-14925279 | None:intergenic | 30.0% |
| !! | TTGAATTCTTTGGCTCATTT+TGG | - | Chr2:14925761-14925780 | MsG0280007399.01.T01:intron | 30.0% |
| !!! | ATTTTGACTCATACAACTGA+GGG | - | Chr2:14926583-14926602 | MsG0280007399.01.T01:CDS | 30.0% |
| !!! | TATTTTGACTCATACAACTG+AGG | - | Chr2:14926582-14926601 | MsG0280007399.01.T01:CDS | 30.0% |
| AACACTCGCAAATTCTTCAA+AGG | - | Chr2:14926153-14926172 | MsG0280007399.01.T01:CDS | 35.0% | |
| AACATTGGTCATGAATAGGA+TGG | + | Chr2:14926975-14926994 | None:intergenic | 35.0% | |
| AACGGATAAACTCATCACAA+TGG | + | Chr2:14926275-14926294 | None:intergenic | 35.0% | |
| AAGAAGCTAAAGGAAGAGTT+TGG | - | Chr2:14927018-14927037 | MsG0280007399.01.T01:intron | 35.0% | |
| ACACCTTCAAAAGAATCACA+AGG | - | Chr2:14927409-14927428 | MsG0280007399.01.T01:CDS | 35.0% | |
| ACATGTCATAAAGCCTGATT+TGG | - | Chr2:14926362-14926381 | MsG0280007399.01.T01:intron | 35.0% | |
| ACTAATTGCATGATGCATTG+AGG | + | Chr2:14927071-14927090 | None:intergenic | 35.0% | |
| AGAGGTTATGATTACATGCA+TGG | - | Chr2:14925227-14925246 | MsG0280007399.01.T01:CDS | 35.0% | |
| AGATCTTCAAACTTGTCAGA+AGG | + | Chr2:14926243-14926262 | None:intergenic | 35.0% | |
| AGATGCTCAAGCTAAAAGAT+TGG | - | Chr2:14926214-14926233 | MsG0280007399.01.T01:CDS | 35.0% | |
| AGTTGTGAGGTTGAATTCTT+TGG | - | Chr2:14925751-14925770 | MsG0280007399.01.T01:intron | 35.0% | |
| ATCAAAGAAGAACTTGGAAG+AGG | - | Chr2:14926411-14926430 | MsG0280007399.01.T01:CDS | 35.0% | |
| ATGTTGAGACATTCACCAAA+TGG | - | Chr2:14925297-14925316 | MsG0280007399.01.T01:intron | 35.0% | |
| ATTCTTCAAAGGTTACAAGG+AGG | - | Chr2:14926164-14926183 | MsG0280007399.01.T01:CDS | 35.0% | |
| CACAAAACTTCACTGTGATA+TGG | - | Chr2:14926443-14926462 | MsG0280007399.01.T01:CDS | 35.0% | |
| CATGTCATAAAGCCTGATTT+GGG | - | Chr2:14926363-14926382 | MsG0280007399.01.T01:intron | 35.0% | |
| CTTCATGATATACTGAGCTT+TGG | + | Chr2:14925441-14925460 | None:intergenic | 35.0% | |
| CTTCTAATTCTTGTACAGCT+TGG | + | Chr2:14927605-14927624 | None:intergenic | 35.0% | |
| GGAAACACTCCAAAGAATTT+AGG | - | Chr2:14926830-14926849 | MsG0280007399.01.T01:intron | 35.0% | |
| GTGTTAATTTCTACCTGCAA+TGG | + | Chr2:14926138-14926157 | None:intergenic | 35.0% | |
| GTTCGTGATGTTCTTAAACA+AGG | - | Chr2:14925616-14925635 | MsG0280007399.01.T01:intron | 35.0% | |
| TAATGAGGCCTACAACAAAT+TGG | - | Chr2:14925851-14925870 | MsG0280007399.01.T01:CDS | 35.0% | |
| TCAAAAGAAACAGAAACTGG+TGG | - | Chr2:14926751-14926770 | MsG0280007399.01.T01:intron | 35.0% | |
| TCAAGATAATATAGACCCCT+TGG | - | Chr2:14926687-14926706 | MsG0280007399.01.T01:CDS | 35.0% | |
| TGAGCATAAGAAGAAGCTAA+AGG | - | Chr2:14927008-14927027 | MsG0280007399.01.T01:intron | 35.0% | |
| TGCTCAAAAGAAACAGAAAC+TGG | - | Chr2:14926748-14926767 | MsG0280007399.01.T01:intron | 35.0% | |
| TTCTTCAAAGGTTACAAGGA+GGG | - | Chr2:14926165-14926184 | MsG0280007399.01.T01:CDS | 35.0% | |
| TTTCATTAGATGCTCATCAC+TGG | - | Chr2:14927626-14927645 | MsG0280007399.01.T01:CDS | 35.0% | |
| ! | AAATCAGGCTTTATGACATG+TGG | + | Chr2:14926363-14926382 | None:intergenic | 35.0% |
| ! | AATCAGGCTTTATGACATGT+GGG | + | Chr2:14926362-14926381 | None:intergenic | 35.0% |
| ! | ATGCAGATATGCACATTTTC+TGG | + | Chr2:14927368-14927387 | None:intergenic | 35.0% |
| ! | ATTTAAAGTCATGTTTCGGG+TGG | - | Chr2:14925974-14925993 | MsG0280007399.01.T01:intron | 35.0% |
| ! | ATTTGGTGAATGTCTCAACA+TGG | + | Chr2:14925298-14925317 | None:intergenic | 35.0% |
| ! | TTGCCTTGTGATTCTTTTGA+AGG | + | Chr2:14927415-14927434 | None:intergenic | 35.0% |
| ! | TTTTTGTTCTCCAGTTGAAC+AGG | - | Chr2:14926858-14926877 | MsG0280007399.01.T01:intron | 35.0% |
| !! | AAGTTCCTCCAATTTGTTGT+AGG | + | Chr2:14925862-14925881 | None:intergenic | 35.0% |
| !! | TAAGTTTTTGGACCCAAATC+AGG | + | Chr2:14926378-14926397 | None:intergenic | 35.0% |
| !! | TTGAATTTCGAAAGCATTGG+AGG | - | Chr2:14925575-14925594 | MsG0280007399.01.T01:intron | 35.0% |
| !! | TTTTGACTCATACAACTGAG+GGG | - | Chr2:14926584-14926603 | MsG0280007399.01.T01:CDS | 35.0% |
| AAGTTTCTGCTCAAATGTCC+AGG | + | Chr2:14927136-14927155 | None:intergenic | 40.0% | |
| AATGCTCTCCAAGTAACCAT+AGG | + | Chr2:14925661-14925680 | None:intergenic | 40.0% | |
| ACACCAAGTCAGAAATCTCA+AGG | - | Chr2:14927188-14927207 | MsG0280007399.01.T01:CDS | 40.0% | |
| ACTCTTGAAATGGCAAGCAA+CGG | + | Chr2:14926293-14926312 | None:intergenic | 40.0% | |
| AGTCCCACTAACTTCTTTGT+TGG | - | Chr2:14926936-14926955 | MsG0280007399.01.T01:intron | 40.0% | |
| ATAAACTCATCACAATGGCG+CGG | + | Chr2:14926270-14926289 | None:intergenic | 40.0% | |
| ATAGACCCCTTGGAGATTAA+TGG | - | Chr2:14926697-14926716 | MsG0280007399.01.T01:intron | 40.0% | |
| CTTTAAATGTACACGCCTGA+AGG | + | Chr2:14925962-14925981 | None:intergenic | 40.0% | |
| GAAGCAGTATTTATTCCTGC+TGG | - | Chr2:14927159-14927178 | MsG0280007399.01.T01:CDS | 40.0% | |
| GAATGTGCTCCAAAAGAACT+TGG | - | Chr2:14925344-14925363 | MsG0280007399.01.T01:intron | 40.0% | |
| GATGTTCTTAAACAAGGGAC+AGG | - | Chr2:14925622-14925641 | MsG0280007399.01.T01:intron | 40.0% | |
| GGATCGCTATACTCTTGAAA+TGG | + | Chr2:14926303-14926322 | None:intergenic | 40.0% | |
| GGTTATGATTACATGCATGG+TGG | - | Chr2:14925230-14925249 | MsG0280007399.01.T01:CDS | 40.0% | |
| TAAGGTCACTTGACAATGGA+CGG | + | Chr2:14925541-14925560 | None:intergenic | 40.0% | |
| TCAATTACAGGTGTAGAACC+TGG | - | Chr2:14927115-14927134 | MsG0280007399.01.T01:CDS | 40.0% | |
| TCTACCTGCAATGGTTGAAA+AGG | + | Chr2:14926129-14926148 | None:intergenic | 40.0% | |
| TCTTCAAACTTGTCAGAAGG+TGG | + | Chr2:14926240-14926259 | None:intergenic | 40.0% | |
| TGAAACGCATGCTTCCAAAT+GGG | - | Chr2:14925396-14925415 | MsG0280007399.01.T01:intron | 40.0% | |
| TGACCTTGAGATTTCTGACT+TGG | + | Chr2:14927194-14927213 | None:intergenic | 40.0% | |
| TGGACATTTGAGCAGAAACT+TGG | - | Chr2:14927135-14927154 | MsG0280007399.01.T01:CDS | 40.0% | |
| ! | AGTAAAAGCCATCGATTGCT+TGG | - | Chr2:14925726-14925745 | MsG0280007399.01.T01:intron | 40.0% |
| ! | ATCAGGCTTTATGACATGTG+GGG | + | Chr2:14926361-14926380 | None:intergenic | 40.0% |
| ! | TCATCCTTTTCAACCATTGC+AGG | - | Chr2:14926122-14926141 | MsG0280007399.01.T01:CDS | 40.0% |
| !! | CTGTTTCTTTTGAGCACACT+TGG | + | Chr2:14926744-14926763 | None:intergenic | 40.0% |
| !! | TTGAAGGTGTCGAAACTCTT+CGG | + | Chr2:14927399-14927418 | None:intergenic | 40.0% |
| !! | TTGAGATTTCTGACTTGGTG+TGG | + | Chr2:14927189-14927208 | None:intergenic | 40.0% |
| !! | TTTCGAAAGCATTGGAGGAA+TGG | - | Chr2:14925580-14925599 | MsG0280007399.01.T01:intron | 40.0% |
| !!! | TCTTTTAGCTTGAGCATCTC+CGG | + | Chr2:14926213-14926232 | None:intergenic | 40.0% |
| AACAAGGGACAGGTTTGAGT+TGG | - | Chr2:14925632-14925651 | MsG0280007399.01.T01:intron | 45.0% | |
| AAGGCTCAAGATCGGAAAGA+GGG | - | Chr2:14926658-14926677 | MsG0280007399.01.T01:CDS | 45.0% | |
| ACAACTAGCCAAGCAATCGA+TGG | + | Chr2:14925737-14925756 | None:intergenic | 45.0% | |
| CCAAAAGAACTTGGAGGTTG+TGG | - | Chr2:14925353-14925372 | MsG0280007399.01.T01:intron | 45.0% | |
| CTGAAACGCATGCTTCCAAA+TGG | - | Chr2:14925395-14925414 | MsG0280007399.01.T01:intron | 45.0% | |
| GGCAAGAGAAGACAAACTTG+AGG | - | Chr2:14927430-14927449 | MsG0280007399.01.T01:CDS | 45.0% | |
| TAAGGCTCAAGATCGGAAAG+AGG | - | Chr2:14926657-14926676 | MsG0280007399.01.T01:CDS | 45.0% | |
| TCACTGTGATATGGCAGATG+CGG | - | Chr2:14926452-14926471 | MsG0280007399.01.T01:CDS | 45.0% | |
| TGAGGCCTACAACAAATTGG+AGG | - | Chr2:14925854-14925873 | MsG0280007399.01.T01:CDS | 45.0% | |
| TGTGCTCCAAAAGAACTTGG+AGG | - | Chr2:14925347-14925366 | MsG0280007399.01.T01:intron | 45.0% | |
| TTGTGGCTGTGGTTGTGTTA+TGG | - | Chr2:14925370-14925389 | MsG0280007399.01.T01:intron | 45.0% | |
| ! | ACAAGGGACAGGTTTGAGTT+GGG | - | Chr2:14925633-14925652 | MsG0280007399.01.T01:intron | 45.0% |
| ! | AGAAACTGGTGGTGCTCTTT+GGG | - | Chr2:14926762-14926781 | MsG0280007399.01.T01:intron | 45.0% |
| ! | CCACAACCTCCAAGTTCTTT+TGG | + | Chr2:14925356-14925375 | None:intergenic | 45.0% |
| ! | TCAGGCTTTATGACATGTGG+GGG | + | Chr2:14926360-14926379 | None:intergenic | 45.0% |
| ! | TTGTGCGCAAATTTGGCTTC+AGG | - | Chr2:14925679-14925698 | MsG0280007399.01.T01:CDS | 45.0% |
| !! | GAGAGCATTGTGCGCAAATT+TGG | - | Chr2:14925672-14925691 | MsG0280007399.01.T01:CDS | 45.0% |
| GCAACTTTGCAGCAAGGTTG+AGG | + | Chr2:14926338-14926357 | None:intergenic | 50.0% | |
| GGGCACATAAGGCTCAAGAT+CGG | - | Chr2:14926650-14926669 | MsG0280007399.01.T01:CDS | 50.0% | |
| GTTGGGAGCCTATGGTTACT+TGG | - | Chr2:14925650-14925669 | MsG0280007399.01.T01:CDS | 50.0% | |
| ! | CAGAAACTGGTGGTGCTCTT+TGG | - | Chr2:14926761-14926780 | MsG0280007399.01.T01:intron | 50.0% |
| ! | CGATTGCTTGGCTAGTTGTG+AGG | - | Chr2:14925738-14925757 | MsG0280007399.01.T01:intron | 50.0% |
| !! | AGGTTTGAGTTGGGAGCCTA+TGG | - | Chr2:14925642-14925661 | MsG0280007399.01.T01:intron | 50.0% |
| AGGTTGAGGATTCCAGCTCG+AGG | + | Chr2:14926324-14926343 | None:intergenic | 55.0% | |
| GAACTTGGAGGTTGTGGCTG+TGG | - | Chr2:14925359-14925378 | MsG0280007399.01.T01:intron | 55.0% | |
| GAGTATAGCGATCCTCGAGC+TGG | - | Chr2:14926309-14926328 | MsG0280007399.01.T01:intron | 55.0% | |
| !! | ACTTGGTGTGGACATCCAGC+AGG | + | Chr2:14927177-14927196 | None:intergenic | 55.0% |
| GTGGGGGCAACTTTGCAGCA+AGG | + | Chr2:14926344-14926363 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 14925206 | 14927653 | 14925206 | ID=MsG0280007399.01;Name=MsG0280007399.01 |
| Chr2 | mRNA | 14925206 | 14927653 | 14925206 | ID=MsG0280007399.01.T01;Parent=MsG0280007399.01;Name=MsG0280007399.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|1|1|8|0|491 |
| Chr2 | exon | 14927308 | 14927653 | 14927308 | ID=MsG0280007399.01.T01:exon:910;Parent=MsG0280007399.01.T01 |
| Chr2 | exon | 14927100 | 14927242 | 14927100 | ID=MsG0280007399.01.T01:exon:909;Parent=MsG0280007399.01.T01 |
| Chr2 | exon | 14926386 | 14926715 | 14926386 | ID=MsG0280007399.01.T01:exon:908;Parent=MsG0280007399.01.T01 |
| Chr2 | exon | 14925980 | 14926282 | 14925980 | ID=MsG0280007399.01.T01:exon:907;Parent=MsG0280007399.01.T01 |
| Chr2 | exon | 14925825 | 14925892 | 14925825 | ID=MsG0280007399.01.T01:exon:906;Parent=MsG0280007399.01.T01 |
| Chr2 | exon | 14925650 | 14925734 | 14925650 | ID=MsG0280007399.01.T01:exon:905;Parent=MsG0280007399.01.T01 |
| Chr2 | exon | 14925408 | 14925527 | 14925408 | ID=MsG0280007399.01.T01:exon:904;Parent=MsG0280007399.01.T01 |
| Chr2 | exon | 14925206 | 14925286 | 14925206 | ID=MsG0280007399.01.T01:exon:903;Parent=MsG0280007399.01.T01 |
| Chr2 | CDS | 14927308 | 14927653 | 14927308 | ID=MsG0280007399.01.T01:cds;Parent=MsG0280007399.01.T01 |
| Chr2 | CDS | 14927100 | 14927242 | 14927100 | ID=MsG0280007399.01.T01:cds;Parent=MsG0280007399.01.T01 |
| Chr2 | CDS | 14926386 | 14926715 | 14926386 | ID=MsG0280007399.01.T01:cds;Parent=MsG0280007399.01.T01 |
| Chr2 | CDS | 14925980 | 14926282 | 14925980 | ID=MsG0280007399.01.T01:cds;Parent=MsG0280007399.01.T01 |
| Chr2 | CDS | 14925825 | 14925892 | 14925825 | ID=MsG0280007399.01.T01:cds;Parent=MsG0280007399.01.T01 |
| Chr2 | CDS | 14925650 | 14925734 | 14925650 | ID=MsG0280007399.01.T01:cds;Parent=MsG0280007399.01.T01 |
| Chr2 | CDS | 14925408 | 14925527 | 14925408 | ID=MsG0280007399.01.T01:cds;Parent=MsG0280007399.01.T01 |
| Chr2 | CDS | 14925206 | 14925286 | 14925206 | ID=MsG0280007399.01.T01:cds;Parent=MsG0280007399.01.T01 |
| Gene Sequence |
| Protein sequence |
