Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007570.01.T01 | PNY09911.1 | 56.962 | 237 | 59 | 9 | 1 | 226 | 31 | 235 | 3.93E-64 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007570.01.T01 | Q9SJW0 | 45.291 | 223 | 60 | 10 | 16 | 221 | 13 | 190 | 4.56E-36 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007570.01.T01 | A0A2K3P3P7 | 56.962 | 237 | 59 | 9 | 1 | 226 | 31 | 235 | 1.88e-64 | 213 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0280007570.01.T01 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007570.01.T01 | MTR_2g027860 | 59.072 | 237 | 56 | 8 | 1 | 226 | 31 | 237 | 7.01e-68 | 212 |
| MsG0280007570.01.T01 | MTR_7g088070 | 41.317 | 167 | 59 | 6 | 21 | 177 | 53 | 190 | 1.35e-23 | 96.3 |
| MsG0280007570.01.T01 | MTR_7g088070 | 41.566 | 166 | 56 | 6 | 21 | 177 | 53 | 186 | 1.41e-23 | 95.9 |
| MsG0280007570.01.T01 | MTR_2g086450 | 32.979 | 188 | 86 | 6 | 7 | 174 | 32 | 199 | 2.72e-16 | 77.4 |
| MsG0280007570.01.T01 | MTR_6g444980 | 36.000 | 175 | 80 | 7 | 7 | 174 | 24 | 173 | 3.00e-16 | 77.0 |
| MsG0280007570.01.T01 | MTR_7g098250 | 34.574 | 188 | 92 | 9 | 3 | 188 | 252 | 410 | 9.92e-15 | 73.2 |
| MsG0280007570.01.T01 | MTR_6g444980 | 35.976 | 164 | 74 | 6 | 7 | 164 | 24 | 162 | 1.04e-14 | 72.4 |
| MsG0280007570.01.T01 | MTR_6g032990 | 32.738 | 168 | 95 | 4 | 14 | 174 | 36 | 192 | 1.89e-14 | 72.0 |
| MsG0280007570.01.T01 | MTR_5g027440 | 32.738 | 168 | 89 | 6 | 21 | 182 | 28 | 177 | 3.51e-14 | 70.5 |
| MsG0280007570.01.T01 | MTR_4g081710 | 32.044 | 181 | 95 | 7 | 14 | 184 | 11 | 173 | 1.09e-13 | 69.7 |
| MsG0280007570.01.T01 | MTR_7g068600 | 31.383 | 188 | 98 | 9 | 21 | 202 | 16 | 178 | 7.67e-12 | 63.2 |
| MsG0280007570.01.T01 | MTR_2g027800 | 47.297 | 74 | 26 | 3 | 21 | 92 | 42 | 104 | 9.25e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007570.01.T01 | AT2G01060 | 45.291 | 223 | 60 | 10 | 16 | 221 | 13 | 190 | 4.64e-37 | 131 |
| MsG0280007570.01.T01 | AT2G01060 | 42.935 | 184 | 44 | 9 | 55 | 221 | 2 | 141 | 1.57e-22 | 92.4 |
| MsG0280007570.01.T01 | AT4G13640 | 38.926 | 149 | 79 | 4 | 21 | 168 | 40 | 177 | 3.12e-18 | 82.0 |
| MsG0280007570.01.T01 | AT4G13640 | 38.462 | 156 | 73 | 6 | 21 | 168 | 40 | 180 | 6.97e-18 | 80.9 |
| MsG0280007570.01.T01 | AT3G04030 | 35.165 | 182 | 88 | 8 | 3 | 174 | 33 | 194 | 1.13e-17 | 81.3 |
| MsG0280007570.01.T01 | AT3G04030 | 35.714 | 182 | 86 | 8 | 3 | 174 | 33 | 193 | 1.52e-17 | 80.9 |
| MsG0280007570.01.T01 | AT3G24120 | 36.913 | 149 | 82 | 3 | 21 | 168 | 44 | 181 | 2.87e-17 | 79.3 |
| MsG0280007570.01.T01 | AT1G79430 | 36.686 | 169 | 87 | 5 | 7 | 174 | 23 | 172 | 3.65e-17 | 79.7 |
| MsG0280007570.01.T01 | AT3G24120 | 37.662 | 154 | 77 | 5 | 21 | 168 | 44 | 184 | 6.24e-17 | 78.2 |
| MsG0280007570.01.T01 | AT3G04030 | 32.370 | 173 | 99 | 6 | 3 | 174 | 33 | 188 | 2.25e-16 | 77.8 |
| MsG0280007570.01.T01 | AT5G18240 | 34.682 | 173 | 95 | 6 | 4 | 174 | 32 | 188 | 5.44e-16 | 76.6 |
| MsG0280007570.01.T01 | AT5G18240 | 34.682 | 173 | 95 | 6 | 4 | 174 | 32 | 188 | 5.44e-16 | 76.6 |
| MsG0280007570.01.T01 | AT5G18240 | 34.783 | 184 | 86 | 7 | 4 | 174 | 32 | 194 | 1.51e-15 | 75.5 |
| MsG0280007570.01.T01 | AT5G18240 | 34.783 | 184 | 86 | 7 | 4 | 174 | 32 | 194 | 1.51e-15 | 75.5 |
| MsG0280007570.01.T01 | AT5G29000 | 33.143 | 175 | 89 | 7 | 2 | 172 | 173 | 323 | 2.34e-15 | 74.7 |
| MsG0280007570.01.T01 | AT5G29000 | 33.143 | 175 | 89 | 7 | 2 | 172 | 173 | 323 | 2.34e-15 | 74.7 |
| MsG0280007570.01.T01 | AT5G45580 | 34.356 | 163 | 79 | 5 | 21 | 171 | 10 | 156 | 2.41e-15 | 73.6 |
| MsG0280007570.01.T01 | AT5G45580 | 34.356 | 163 | 79 | 5 | 21 | 171 | 26 | 172 | 2.73e-15 | 73.6 |
| MsG0280007570.01.T01 | AT5G29000 | 34.286 | 175 | 87 | 7 | 2 | 172 | 216 | 366 | 3.74e-15 | 74.3 |
| MsG0280007570.01.T01 | AT5G18240 | 34.463 | 177 | 94 | 7 | 4 | 174 | 32 | 192 | 7.97e-15 | 73.2 |
| MsG0280007570.01.T01 | AT5G06800 | 31.492 | 181 | 102 | 6 | 7 | 185 | 182 | 342 | 2.40e-14 | 71.6 |
| MsG0280007570.01.T01 | AT3G12730 | 32.203 | 177 | 83 | 8 | 2 | 168 | 10 | 159 | 1.00e-13 | 68.6 |
Find 85 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTAAAAGTAATTAAATTA+AGG | 0.260834 | 2:-17401810 | None:intergenic |
| GATCACTTTGATCCTTCTTT+AGG | 0.297515 | 2:+17401606 | MsG0280007570.01.T01:three_prime_UTR |
| TTTAGAGAACTGATTTGAAT+TGG | 0.300478 | 2:+17401826 | MsG0280007570.01.T01:three_prime_UTR |
| AAAAGTTATCAGCAAATTAA+AGG | 0.302680 | 2:-17400427 | None:intergenic |
| TGCAGAGACAGCTACAATTA+AGG | 0.346271 | 2:+17401167 | MsG0280007570.01.T01:CDS |
| CCATGTTAAGAGCCATTTGC+AGG | 0.349218 | 2:+17400179 | MsG0280007570.01.T01:CDS |
| CATAACTCTGAGGACACCTT+TGG | 0.363948 | 2:-17400134 | None:intergenic |
| TTAGTTGATCTCTCGCCATT+AGG | 0.373781 | 2:-17401468 | None:intergenic |
| TTCTGCTGAAGACTCTTTGC+TGG | 0.382108 | 2:-17401376 | None:intergenic |
| GAACCGATGACACCAGATTC+TGG | 0.386395 | 2:+17401417 | MsG0280007570.01.T01:exon |
| GGAAAACAGCGGTTGGTTGC+TGG | 0.394253 | 2:-17401575 | None:intergenic |
| CTACAAGAAGTGGTGAGAAT+TGG | 0.407701 | 2:+17401634 | MsG0280007570.01.T01:three_prime_UTR |
| ACAATTAAGGATAGAAGCTC+AGG | 0.410929 | 2:+17401180 | MsG0280007570.01.T01:CDS |
| TTAGAGAACTGATTTGAATT+GGG | 0.421756 | 2:+17401827 | MsG0280007570.01.T01:three_prime_UTR |
| CATTTGAAGCTTTAGTGCTT+CGG | 0.424328 | 2:-17400844 | None:intergenic |
| GATATGCTTTCCAATCTAGA+TGG | 0.424452 | 2:+17400493 | MsG0280007570.01.T01:CDS |
| TCCTGTTGGGACATATCTCC+TGG | 0.428112 | 2:-17401292 | None:intergenic |
| GGTGCTTCCTCATCAGATAC+TGG | 0.444138 | 2:+17401533 | MsG0280007570.01.T01:three_prime_UTR |
| CTTTCAGAAGCACCCGGCTC+TGG | 0.447624 | 2:+17401253 | MsG0280007570.01.T01:CDS |
| CCGACTTGGCAACCAGAATC+TGG | 0.448662 | 2:-17401429 | None:intergenic |
| TCTCCTGCTGACAGTCCTAA+TGG | 0.454643 | 2:+17401453 | MsG0280007570.01.T01:three_prime_UTR |
| TCACGATGAACCATCTAGAT+TGG | 0.455940 | 2:-17400503 | None:intergenic |
| GTTGATGCTGTGGCTCAACT+TGG | 0.466308 | 2:+17399905 | MsG0280007570.01.T01:CDS |
| AAGAAGGATCAAAGTGATCT+CGG | 0.468691 | 2:-17401602 | None:intergenic |
| ATAATGGATACCACATTAAG+AGG | 0.471072 | 2:-17400219 | None:intergenic |
| CAAAGGTGTCCTCAGAGTTA+TGG | 0.471557 | 2:+17400135 | MsG0280007570.01.T01:CDS |
| CGAAGCACTAAAGCTTCAAA+TGG | 0.471790 | 2:+17400845 | MsG0280007570.01.T01:CDS |
| TCCAGGAGATATGTCCCAAC+AGG | 0.476349 | 2:+17401291 | MsG0280007570.01.T01:CDS |
| ATAACTCTGAGGACACCTTT+GGG | 0.476739 | 2:-17400133 | None:intergenic |
| TCTTATTGTCGAGCTCCTGT+TGG | 0.481895 | 2:-17401306 | None:intergenic |
| CTTATTGTCGAGCTCCTGTT+GGG | 0.485642 | 2:-17401305 | None:intergenic |
| GGTAGGAGCGCTATGGATCC+TGG | 0.493466 | 2:+17399800 | None:intergenic |
| GAGTGCACATTACCTGCAAA+TGG | 0.500488 | 2:-17400191 | None:intergenic |
| CCTCAGAGTTATGGTGTACA+AGG | 0.501690 | 2:+17400144 | MsG0280007570.01.T01:CDS |
| TTGCAGGTAATGTGCACTCT+AGG | 0.507886 | 2:+17400195 | MsG0280007570.01.T01:CDS |
| TCCTTAGGTGCCACACCCAA+AGG | 0.508503 | 2:+17400118 | MsG0280007570.01.T01:intron |
| GATGCTGTGGCTCAACTTGG+TGG | 0.512420 | 2:+17399908 | MsG0280007570.01.T01:CDS |
| GCTCGACAATAAGACTGAAC+CGG | 0.517717 | 2:+17401315 | MsG0280007570.01.T01:CDS |
| TGGTGCTGATACACCAGAGC+CGG | 0.522258 | 2:-17401266 | None:intergenic |
| AATCTGGTGTCATCGGTTCA+TGG | 0.523061 | 2:-17401413 | None:intergenic |
| GATCAAAGTGATCTCGGGTA+AGG | 0.525714 | 2:-17401596 | None:intergenic |
| CCTGCAAATGGCTCTTAACA+TGG | 0.525821 | 2:-17400179 | None:intergenic |
| CCAGATTCTGGTTGCCAAGT+CGG | 0.528854 | 2:+17401429 | MsG0280007570.01.T01:three_prime_UTR |
| GTACCATCGGATGAGCAGTC+AGG | 0.531157 | 2:-17400310 | None:intergenic |
| AGAAGGATCAAAGTGATCTC+GGG | 0.531953 | 2:-17401601 | None:intergenic |
| GTTATATGCATTCTTAGTGA+TGG | 0.531959 | 2:+17401720 | MsG0280007570.01.T01:three_prime_UTR |
| GGTGTATCAGCACCAACTCC+AGG | 0.533448 | 2:+17401274 | MsG0280007570.01.T01:CDS |
| AGCGCTATGGATCCTGGTAG+TGG | 0.534994 | 2:+17399806 | None:intergenic |
| CTTGTAGACATGCCTAAAGA+AGG | 0.541592 | 2:-17401618 | None:intergenic |
| GTGGTGAGAATTGGATAGCT+TGG | 0.543837 | 2:+17401643 | MsG0280007570.01.T01:three_prime_UTR |
| TTAGGCATGTCTACAAGAAG+TGG | 0.546196 | 2:+17401624 | MsG0280007570.01.T01:three_prime_UTR |
| CGGGTAAGGAAAACAGCGGT+TGG | 0.546421 | 2:-17401582 | None:intergenic |
| CACTCTAGGTCCTCTTAATG+TGG | 0.549146 | 2:+17400209 | MsG0280007570.01.T01:CDS |
| GGTGCTGATACACCAGAGCC+GGG | 0.552630 | 2:-17401265 | None:intergenic |
| TCTGAGGACACCTTTGGGTG+TGG | 0.554653 | 2:-17400128 | None:intergenic |
| CAACTCAAGCAACGTTGCGT+TGG | 0.556615 | 2:+17399858 | MsG0280007570.01.T01:CDS |
| CAACCAGAATCTGGTGTCAT+CGG | 0.558599 | 2:-17401420 | None:intergenic |
| GCGGTTGGTTGCTGGTATGA+TGG | 0.564870 | 2:-17401567 | None:intergenic |
| TGTCAGCAGGAGAACCGACT+TGG | 0.567410 | 2:-17401443 | None:intergenic |
| TGGGACATATCTCCTGGAGT+TGG | 0.568536 | 2:-17401286 | None:intergenic |
| AGACTGTTTCCTCCACTACC+AGG | 0.568775 | 2:-17399818 | None:intergenic |
| AAGAGCAACAGCGACTCAGT+GGG | 0.575024 | 2:+17401227 | MsG0280007570.01.T01:CDS |
| TCGCCATTAGGACTGTCAGC+AGG | 0.575904 | 2:-17401456 | None:intergenic |
| GAATTGGATAGCTTGGTGGC+AGG | 0.595253 | 2:+17401650 | MsG0280007570.01.T01:three_prime_UTR |
| TTACCTGACTGCTCATCCGA+TGG | 0.595863 | 2:+17400307 | MsG0280007570.01.T01:CDS |
| ATATGCATTCTTAGTGATGG+AGG | 0.597500 | 2:+17401723 | MsG0280007570.01.T01:three_prime_UTR |
| TGAACGCTTTGTTGATGCTG+TGG | 0.601507 | 2:+17399895 | MsG0280007570.01.T01:CDS |
| TCAGGTAAGTATTTGCTAGT+CGG | 0.605410 | 2:-17400292 | None:intergenic |
| CTAAAAGCAACGAGTAAGCG+TGG | 0.613200 | 2:+17401487 | MsG0280007570.01.T01:three_prime_UTR |
| GGGGTTCTTTCAGAAGCACC+CGG | 0.619430 | 2:+17401247 | MsG0280007570.01.T01:CDS |
| AGCACTAAAGCTTCAAATGG+AGG | 0.636135 | 2:+17400848 | MsG0280007570.01.T01:CDS |
| GAAGAGCAACAGCGACTCAG+TGG | 0.642615 | 2:+17401226 | MsG0280007570.01.T01:CDS |
| GGGGAAAATACTCACGATCG+TGG | 0.643156 | 2:-17399931 | None:intergenic |
| CTTGACTCCAGTATCTGATG+AGG | 0.648174 | 2:-17401540 | None:intergenic |
| GTGAGAATTGGATAGCTTGG+TGG | 0.651245 | 2:+17401646 | MsG0280007570.01.T01:three_prime_UTR |
| CAATTAAGGATAGAAGCTCA+GGG | 0.654933 | 2:+17401181 | MsG0280007570.01.T01:CDS |
| AGTTATCAGCAAATTAAAGG+AGG | 0.655540 | 2:-17400424 | None:intergenic |
| GCTATGGATCCTGGTAGTGG+AGG | 0.662575 | 2:+17399809 | None:intergenic |
| AATTAAAGGAGGAAACAAAG+TGG | 0.674812 | 2:-17400413 | None:intergenic |
| AGCGTATTTGAAATCAGACA+TGG | 0.689566 | 2:+17401512 | MsG0280007570.01.T01:three_prime_UTR |
| AAAACTGACAAGAAAGAACG+GGG | 0.707916 | 2:+17400470 | MsG0280007570.01.T01:CDS |
| AGAGCAACAGCGACTCAGTG+GGG | 0.711050 | 2:+17401228 | MsG0280007570.01.T01:CDS |
| CCTTGTACACCATAACTCTG+AGG | 0.712602 | 2:-17400144 | None:intergenic |
| ATCTCGGGTAAGGAAAACAG+CGG | 0.741797 | 2:-17401586 | None:intergenic |
| AAACTGACAAGAAAGAACGG+GGG | 0.753080 | 2:+17400471 | MsG0280007570.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTAAAAAAACAAGAATAA+TGG | - | Chr2:17400238-17400257 | None:intergenic | 15.0% |
| !!! | CTCTAAAAGTAATTAAATTA+AGG | - | Chr2:17401813-17401832 | None:intergenic | 15.0% |
| !!! | TAAAAAGTTATGTTTCTTTT+AGG | + | Chr2:17400685-17400704 | MsG0280007570.01.T01:intron | 15.0% |
| !!! | TTTAAAAACTTTTAGATAAG+AGG | - | Chr2:17400083-17400102 | None:intergenic | 15.0% |
| !!! | TTTTATTTTGAATCAAGTAA+AGG | + | Chr2:17401072-17401091 | MsG0280007570.01.T01:intron | 15.0% |
| !! | AAAAGTTATCAGCAAATTAA+AGG | - | Chr2:17400430-17400449 | None:intergenic | 20.0% |
| !! | AAAATCAGTAAGATCAAATA+TGG | - | Chr2:17400358-17400377 | None:intergenic | 20.0% |
| !! | AAGAATGCTAATACTTTAAA+CGG | - | Chr2:17400392-17400411 | None:intergenic | 20.0% |
| !! | ATAGAAAAATAACAGTTACA+AGG | - | Chr2:17401138-17401157 | None:intergenic | 20.0% |
| !! | GTTATCATAATTATCAAGAA+TGG | + | Chr2:17400551-17400570 | MsG0280007570.01.T01:intron | 20.0% |
| !! | TAAATTCATCATCTATGATT+AGG | - | Chr2:17400046-17400065 | None:intergenic | 20.0% |
| !!! | AACTTTTTATTGTCTTATAG+AGG | + | Chr2:17400443-17400462 | MsG0280007570.01.T01:CDS | 20.0% |
| !!! | ACTTTTTATTGTCTTATAGA+GGG | + | Chr2:17400444-17400463 | MsG0280007570.01.T01:CDS | 20.0% |
| ! | AAAAAACTGACAAGAAAGAA+CGG | + | Chr2:17400468-17400487 | MsG0280007570.01.T01:CDS | 25.0% |
| ! | ATTGGTTACATCATACATAT+TGG | + | Chr2:17399986-17400005 | MsG0280007570.01.T01:intron | 25.0% |
| ! | ATTTCAGCTAACGAAAAAAT+GGG | - | Chr2:17399954-17399973 | None:intergenic | 25.0% |
| ! | TCATAGATGATGAATTTATC+AGG | + | Chr2:17400048-17400067 | MsG0280007570.01.T01:intron | 25.0% |
| !! | CAGATATCAAATACTTTTGT+TGG | + | Chr2:17400011-17400030 | MsG0280007570.01.T01:intron | 25.0% |
| !! | CTTTTTATTGTCTTATAGAG+GGG | + | Chr2:17400445-17400464 | MsG0280007570.01.T01:CDS | 25.0% |
| !!! | TATAGATTTTTTTCCACCAA+CGG | - | Chr2:17400728-17400747 | None:intergenic | 25.0% |
| !!! | TTAGAGAACTGATTTGAATT+GGG | + | Chr2:17401827-17401846 | MsG0280007570.01.T01:three_prime_UTR | 25.0% |
| !!! | TTTAGAGAACTGATTTGAAT+TGG | + | Chr2:17401826-17401845 | MsG0280007570.01.T01:three_prime_UTR | 25.0% |
| AAAAACTGACAAGAAAGAAC+GGG | + | Chr2:17400469-17400488 | MsG0280007570.01.T01:CDS | 30.0% | |
| AAGGAATAATAGACAGAATG+AGG | + | Chr2:17401091-17401110 | MsG0280007570.01.T01:intron | 30.0% | |
| AATAATGTTACATGTCTGCA+GGG | + | Chr2:17400810-17400829 | MsG0280007570.01.T01:intron | 30.0% | |
| AATTAAAGGAGGAAACAAAG+TGG | - | Chr2:17400416-17400435 | None:intergenic | 30.0% | |
| ACTAATAGAACCATCTCATT+TGG | + | Chr2:17400622-17400641 | MsG0280007570.01.T01:intron | 30.0% | |
| AGGAATAATAGACAGAATGA+GGG | + | Chr2:17401092-17401111 | MsG0280007570.01.T01:intron | 30.0% | |
| AGTTATCAGCAAATTAAAGG+AGG | - | Chr2:17400427-17400446 | None:intergenic | 30.0% | |
| ATGATAACCCAAAAGCAAAA+AGG | - | Chr2:17400539-17400558 | None:intergenic | 30.0% | |
| CATTTCAGCTAACGAAAAAA+TGG | - | Chr2:17399955-17399974 | None:intergenic | 30.0% | |
| GTGAGATGAAATGATGATAT+TGG | + | Chr2:17400987-17401006 | MsG0280007570.01.T01:intron | 30.0% | |
| GTTATATGCATTCTTAGTGA+TGG | + | Chr2:17401720-17401739 | MsG0280007570.01.T01:three_prime_UTR | 30.0% | |
| TAATAATGTTACATGTCTGC+AGG | + | Chr2:17400809-17400828 | MsG0280007570.01.T01:intron | 30.0% | |
| TGAAATGTAATGCGTAGAAT+TGG | + | Chr2:17399968-17399987 | MsG0280007570.01.T01:intron | 30.0% | |
| TGATAACCCAAAAGCAAAAA+GGG | - | Chr2:17400538-17400557 | None:intergenic | 30.0% | |
| TTTCAGCTAACGAAAAAATG+GGG | - | Chr2:17399953-17399972 | None:intergenic | 30.0% | |
| ! | TCTATACTATCCTTTTCCTT+AGG | + | Chr2:17400103-17400122 | MsG0280007570.01.T01:intron | 30.0% |
| !! | ATAATGGATACCACATTAAG+AGG | - | Chr2:17400222-17400241 | None:intergenic | 30.0% |
| !!! | ATAGATTTTTTTCCACCAAC+GGG | - | Chr2:17400727-17400746 | None:intergenic | 30.0% |
| !!! | ATCTCATTTGGTTTTACATC+CGG | + | Chr2:17400634-17400653 | MsG0280007570.01.T01:intron | 30.0% |
| AAAACTGACAAGAAAGAACG+GGG | + | Chr2:17400470-17400489 | MsG0280007570.01.T01:CDS | 35.0% | |
| AAATCAGATTGACGTACCAT+CGG | - | Chr2:17400326-17400345 | None:intergenic | 35.0% | |
| AAGAAGGATCAAAGTGATCT+CGG | - | Chr2:17401605-17401624 | None:intergenic | 35.0% | |
| ACAATTAAGGATAGAAGCTC+AGG | + | Chr2:17401180-17401199 | MsG0280007570.01.T01:CDS | 35.0% | |
| ATAATGTTACATGTCTGCAG+GGG | + | Chr2:17400811-17400830 | MsG0280007570.01.T01:intron | 35.0% | |
| ATATGCATTCTTAGTGATGG+AGG | + | Chr2:17401723-17401742 | MsG0280007570.01.T01:three_prime_UTR | 35.0% | |
| CAATTAAGGATAGAAGCTCA+GGG | + | Chr2:17401181-17401200 | MsG0280007570.01.T01:CDS | 35.0% | |
| GATATGCTTTCCAATCTAGA+TGG | + | Chr2:17400493-17400512 | MsG0280007570.01.T01:CDS | 35.0% | |
| GATCACTTTGATCCTTCTTT+AGG | + | Chr2:17401606-17401625 | MsG0280007570.01.T01:three_prime_UTR | 35.0% | |
| GGATGTAAAACCAAATGAGA+TGG | - | Chr2:17400635-17400654 | None:intergenic | 35.0% | |
| ! | AGCGTATTTGAAATCAGACA+TGG | + | Chr2:17401512-17401531 | MsG0280007570.01.T01:three_prime_UTR | 35.0% |
| ! | ATAGCTTCCCTTTTTGCTTT+TGG | + | Chr2:17400528-17400547 | MsG0280007570.01.T01:intron | 35.0% |
| ! | ATGTGTTTTGTGTAATCTGC+AGG | + | Chr2:17401676-17401695 | MsG0280007570.01.T01:three_prime_UTR | 35.0% |
| ! | CATTTGAAGCTTTAGTGCTT+CGG | - | Chr2:17400847-17400866 | None:intergenic | 35.0% |
| ! | TCAGGTAAGTATTTGCTAGT+CGG | - | Chr2:17400295-17400314 | None:intergenic | 35.0% |
| ! | TGAGATGGTTCTATTAGTTC+AGG | - | Chr2:17400620-17400639 | None:intergenic | 35.0% |
| ! | TGTGTTTTGTGTAATCTGCA+GGG | + | Chr2:17401677-17401696 | MsG0280007570.01.T01:three_prime_UTR | 35.0% |
| !! | TAGCTTCCCTTTTTGCTTTT+GGG | + | Chr2:17400529-17400548 | MsG0280007570.01.T01:intron | 35.0% |
| AAACTGACAAGAAAGAACGG+GGG | + | Chr2:17400471-17400490 | MsG0280007570.01.T01:CDS | 40.0% | |
| AGAAGGATCAAAGTGATCTC+GGG | - | Chr2:17401604-17401623 | None:intergenic | 40.0% | |
| AGCACTAAAGCTTCAAATGG+AGG | + | Chr2:17400848-17400867 | MsG0280007570.01.T01:CDS | 40.0% | |
| CACTAGTGCAAATTTGACTC+CGG | - | Chr2:17400656-17400675 | None:intergenic | 40.0% | |
| CAGATCAGATCAGTTCAACA+AGG | - | Chr2:17400911-17400930 | None:intergenic | 40.0% | |
| CTACAAGAAGTGGTGAGAAT+TGG | + | Chr2:17401634-17401653 | MsG0280007570.01.T01:three_prime_UTR | 40.0% | |
| CTTGTAGACATGCCTAAAGA+AGG | - | Chr2:17401621-17401640 | None:intergenic | 40.0% | |
| GAAGCGACTACATGAACAAT+TGG | + | Chr2:17400875-17400894 | MsG0280007570.01.T01:intron | 40.0% | |
| TCACGATGAACCATCTAGAT+TGG | - | Chr2:17400506-17400525 | None:intergenic | 40.0% | |
| TGCAGAGACAGCTACAATTA+AGG | + | Chr2:17401167-17401186 | MsG0280007570.01.T01:CDS | 40.0% | |
| TTAGGCATGTCTACAAGAAG+TGG | + | Chr2:17401624-17401643 | MsG0280007570.01.T01:three_prime_UTR | 40.0% | |
| TTAGTTGATCTCTCGCCATT+AGG | - | Chr2:17401471-17401490 | None:intergenic | 40.0% | |
| ! | ATAACTCTGAGGACACCTTT+GGG | - | Chr2:17400136-17400155 | None:intergenic | 40.0% |
| ! | CGAAGCACTAAAGCTTCAAA+TGG | + | Chr2:17400845-17400864 | MsG0280007570.01.T01:CDS | 40.0% |
| ! | TGCTAGTCGGTATTTCTGTA+TGG | - | Chr2:17400282-17400301 | None:intergenic | 40.0% |
| !! | GCTCTTTAGCAGCTTTTTCT+GGG | - | Chr2:17401351-17401370 | None:intergenic | 40.0% |
| !! | TGCTCTTTAGCAGCTTTTTC+TGG | - | Chr2:17401352-17401371 | None:intergenic | 40.0% |
| ATCTCGGGTAAGGAAAACAG+CGG | - | Chr2:17401589-17401608 | None:intergenic | 45.0% | |
| ATTCAATGCCTCAAACCCGT+TGG | + | Chr2:17400709-17400728 | MsG0280007570.01.T01:intron | 45.0% | |
| CACTCTAGGTCCTCTTAATG+TGG | + | Chr2:17400209-17400228 | MsG0280007570.01.T01:CDS | 45.0% | |
| CCATGTTAAGAGCCATTTGC+AGG | + | Chr2:17400179-17400198 | MsG0280007570.01.T01:CDS | 45.0% | |
| CCTCAGAGTTATGGTGTACA+AGG | + | Chr2:17400144-17400163 | MsG0280007570.01.T01:CDS | 45.0% | |
| CCTGCAAATGGCTCTTAACA+TGG | - | Chr2:17400182-17400201 | None:intergenic | 45.0% | |
| CCTTGTACACCATAACTCTG+AGG | - | Chr2:17400147-17400166 | None:intergenic | 45.0% | |
| CTAAAAGCAACGAGTAAGCG+TGG | + | Chr2:17401487-17401506 | MsG0280007570.01.T01:three_prime_UTR | 45.0% | |
| CTTATTGTCGAGCTCCTGTT+GGG | - | Chr2:17401308-17401327 | None:intergenic | 45.0% | |
| CTTGACTCCAGTATCTGATG+AGG | - | Chr2:17401543-17401562 | None:intergenic | 45.0% | |
| GAGTGCACATTACCTGCAAA+TGG | - | Chr2:17400194-17400213 | None:intergenic | 45.0% | |
| GATCAAAGTGATCTCGGGTA+AGG | - | Chr2:17401599-17401618 | None:intergenic | 45.0% | |
| GCGACTACATGAACAATTGG+AGG | + | Chr2:17400878-17400897 | MsG0280007570.01.T01:intron | 45.0% | |
| GCTCGACAATAAGACTGAAC+CGG | + | Chr2:17401315-17401334 | MsG0280007570.01.T01:CDS | 45.0% | |
| GTGAGAATTGGATAGCTTGG+TGG | + | Chr2:17401646-17401665 | MsG0280007570.01.T01:three_prime_UTR | 45.0% | |
| GTGGTGAGAATTGGATAGCT+TGG | + | Chr2:17401643-17401662 | MsG0280007570.01.T01:three_prime_UTR | 45.0% | |
| TCTTATTGTCGAGCTCCTGT+TGG | - | Chr2:17401309-17401328 | None:intergenic | 45.0% | |
| TTCTGCTGAAGACTCTTTGC+TGG | - | Chr2:17401379-17401398 | None:intergenic | 45.0% | |
| TTGCAGGTAATGTGCACTCT+AGG | + | Chr2:17400195-17400214 | MsG0280007570.01.T01:CDS | 45.0% | |
| ! | CATAACTCTGAGGACACCTT+TGG | - | Chr2:17400137-17400156 | None:intergenic | 45.0% |
| ! | TGAACGCTTTGTTGATGCTG+TGG | + | Chr2:17399895-17399914 | MsG0280007570.01.T01:CDS | 45.0% |
| !! | AATCTGGTGTCATCGGTTCA+TGG | - | Chr2:17401416-17401435 | None:intergenic | 45.0% |
| !! | CAAAGGTGTCCTCAGAGTTA+TGG | + | Chr2:17400135-17400154 | MsG0280007570.01.T01:CDS | 45.0% |
| !! | CAACCAGAATCTGGTGTCAT+CGG | - | Chr2:17401423-17401442 | None:intergenic | 45.0% |
| !! | TAGCAGCTTTTTCTGGGTCA+GGG | - | Chr2:17401345-17401364 | None:intergenic | 45.0% |
| !! | TTAGCAGCTTTTTCTGGGTC+AGG | - | Chr2:17401346-17401365 | None:intergenic | 45.0% |
| !! | TTTTTCCACCAACGGGTTTG+AGG | - | Chr2:17400720-17400739 | None:intergenic | 45.0% |
| AAGAGCAACAGCGACTCAGT+GGG | + | Chr2:17401227-17401246 | MsG0280007570.01.T01:CDS | 50.0% | |
| AGACTGTTTCCTCCACTACC+AGG | - | Chr2:17399821-17399840 | None:intergenic | 50.0% | |
| CAACTCAAGCAACGTTGCGT+TGG | + | Chr2:17399858-17399877 | MsG0280007570.01.T01:CDS | 50.0% | |
| GAACCGATGACACCAGATTC+TGG | + | Chr2:17401417-17401436 | MsG0280007570.01.T01:exon | 50.0% | |
| GGGGAAAATACTCACGATCG+TGG | - | Chr2:17399934-17399953 | None:intergenic | 50.0% | |
| GGTGCTTCCTCATCAGATAC+TGG | + | Chr2:17401533-17401552 | MsG0280007570.01.T01:three_prime_UTR | 50.0% | |
| GTTGATGCTGTGGCTCAACT+TGG | + | Chr2:17399905-17399924 | MsG0280007570.01.T01:CDS | 50.0% | |
| TCCAGGAGATATGTCCCAAC+AGG | + | Chr2:17401291-17401310 | MsG0280007570.01.T01:CDS | 50.0% | |
| TCCTGTTGGGACATATCTCC+TGG | - | Chr2:17401295-17401314 | None:intergenic | 50.0% | |
| TCTCCTGCTGACAGTCCTAA+TGG | + | Chr2:17401453-17401472 | MsG0280007570.01.T01:three_prime_UTR | 50.0% | |
| TGGGACATATCTCCTGGAGT+TGG | - | Chr2:17401289-17401308 | None:intergenic | 50.0% | |
| TTACCTGACTGCTCATCCGA+TGG | + | Chr2:17400307-17400326 | MsG0280007570.01.T01:CDS | 50.0% | |
| ! | CCAGATTCTGGTTGCCAAGT+CGG | + | Chr2:17401429-17401448 | MsG0280007570.01.T01:three_prime_UTR | 50.0% |
| ! | GAATTGGATAGCTTGGTGGC+AGG | + | Chr2:17401650-17401669 | MsG0280007570.01.T01:three_prime_UTR | 50.0% |
| !! | AGCAGCTTTTTCTGGGTCAG+GGG | - | Chr2:17401344-17401363 | None:intergenic | 50.0% |
| ACCTTTGGGTGTGGCACCTA+AGG | - | Chr2:17400122-17400141 | None:intergenic | 55.0% | |
| AGAGCAACAGCGACTCAGTG+GGG | + | Chr2:17401228-17401247 | MsG0280007570.01.T01:CDS | 55.0% | |
| CAATGCCTCAAACCCGTTGG+TGG | + | Chr2:17400712-17400731 | MsG0280007570.01.T01:intron | 55.0% | |
| CGGGTAAGGAAAACAGCGGT+TGG | - | Chr2:17401585-17401604 | None:intergenic | 55.0% | |
| GAAGAGCAACAGCGACTCAG+TGG | + | Chr2:17401226-17401245 | MsG0280007570.01.T01:CDS | 55.0% | |
| GATGCTGTGGCTCAACTTGG+TGG | + | Chr2:17399908-17399927 | MsG0280007570.01.T01:CDS | 55.0% | |
| GGGTGTGGCACCTAAGGAAA+AGG | - | Chr2:17400116-17400135 | None:intergenic | 55.0% | |
| GGTGTATCAGCACCAACTCC+AGG | + | Chr2:17401274-17401293 | MsG0280007570.01.T01:CDS | 55.0% | |
| GTACCATCGGATGAGCAGTC+AGG | - | Chr2:17400313-17400332 | None:intergenic | 55.0% | |
| TCGCCATTAGGACTGTCAGC+AGG | - | Chr2:17401459-17401478 | None:intergenic | 55.0% | |
| TCTGAGGACACCTTTGGGTG+TGG | - | Chr2:17400131-17400150 | None:intergenic | 55.0% | |
| TGTCAGCAGGAGAACCGACT+TGG | - | Chr2:17401446-17401465 | None:intergenic | 55.0% | |
| ! | GCGGTTGGTTGCTGGTATGA+TGG | - | Chr2:17401570-17401589 | None:intergenic | 55.0% |
| ! | GGAAAACAGCGGTTGGTTGC+TGG | - | Chr2:17401578-17401597 | None:intergenic | 55.0% |
| ! | TCCTTAGGTGCCACACCCAA+AGG | + | Chr2:17400118-17400137 | MsG0280007570.01.T01:intron | 55.0% |
| ! | TTTTCTGGGTCAGGGGTTGC+CGG | - | Chr2:17401337-17401356 | None:intergenic | 55.0% |
| !! | CCGACTTGGCAACCAGAATC+TGG | - | Chr2:17401432-17401451 | None:intergenic | 55.0% |
| !! | GGGGTTCTTTCAGAAGCACC+CGG | + | Chr2:17401247-17401266 | MsG0280007570.01.T01:CDS | 55.0% |
| !! | TGGTGCTGATACACCAGAGC+CGG | - | Chr2:17401269-17401288 | None:intergenic | 55.0% |
| !! | CTTTCAGAAGCACCCGGCTC+TGG | + | Chr2:17401253-17401272 | MsG0280007570.01.T01:CDS | 60.0% |
| !! | GGTGCTGATACACCAGAGCC+GGG | - | Chr2:17401268-17401287 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 17399812 | 17401886 | 17399812 | ID=MsG0280007570.01;Name=MsG0280007570.01 |
| Chr2 | mRNA | 17399812 | 17401886 | 17399812 | ID=MsG0280007570.01.T01;Parent=MsG0280007570.01;Name=MsG0280007570.01.T01;_AED=0.21;_eAED=0.25;_QI=0|0|0.16|1|0.2|0.33|6|460|232 |
| Chr2 | exon | 17399812 | 17399942 | 17399812 | ID=MsG0280007570.01.T01:exon:10494;Parent=MsG0280007570.01.T01 |
| Chr2 | exon | 17400125 | 17400230 | 17400125 | ID=MsG0280007570.01.T01:exon:10495;Parent=MsG0280007570.01.T01 |
| Chr2 | exon | 17400287 | 17400328 | 17400287 | ID=MsG0280007570.01.T01:exon:10496;Parent=MsG0280007570.01.T01 |
| Chr2 | exon | 17400405 | 17400525 | 17400405 | ID=MsG0280007570.01.T01:exon:10497;Parent=MsG0280007570.01.T01 |
| Chr2 | exon | 17400831 | 17400869 | 17400831 | ID=MsG0280007570.01.T01:exon:10498;Parent=MsG0280007570.01.T01 |
| Chr2 | exon | 17401167 | 17401886 | 17401167 | ID=MsG0280007570.01.T01:exon:10499;Parent=MsG0280007570.01.T01 |
| Chr2 | CDS | 17399812 | 17399942 | 17399812 | ID=MsG0280007570.01.T01:cds;Parent=MsG0280007570.01.T01 |
| Chr2 | CDS | 17400125 | 17400230 | 17400125 | ID=MsG0280007570.01.T01:cds;Parent=MsG0280007570.01.T01 |
| Chr2 | CDS | 17400287 | 17400328 | 17400287 | ID=MsG0280007570.01.T01:cds;Parent=MsG0280007570.01.T01 |
| Chr2 | CDS | 17400405 | 17400525 | 17400405 | ID=MsG0280007570.01.T01:cds;Parent=MsG0280007570.01.T01 |
| Chr2 | CDS | 17400831 | 17400869 | 17400831 | ID=MsG0280007570.01.T01:cds;Parent=MsG0280007570.01.T01 |
| Chr2 | CDS | 17401167 | 17401426 | 17401167 | ID=MsG0280007570.01.T01:cds;Parent=MsG0280007570.01.T01 |
| Chr2 | three_prime_UTR | 17401427 | 17401886 | 17401427 | ID=MsG0280007570.01.T01:three_prime_utr;Parent=MsG0280007570.01.T01 |
| Gene Sequence |
| Protein sequence |
