AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007962.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007962.01.T01 MTR_2g436400 87.402 381 48 0 1 381 1 381 0.0 682
MsG0280007962.01.T01 MTR_2g437060 76.071 397 83 3 1 387 1 395 0.0 602
MsG0280007962.01.T01 MTR_2g437080 70.649 385 101 3 10 389 5 382 0.0 538
MsG0280007962.01.T01 MTR_2g436440 65.491 397 122 4 1 390 1 389 9.85e-179 503
MsG0280007962.01.T01 MTR_2g437020 65.404 396 111 4 5 390 4 383 2.22e-178 501
MsG0280007962.01.T01 MTR_2g437030 66.410 390 119 2 10 390 83 469 8.98e-176 498
MsG0280007962.01.T01 MTR_2g437040 64.903 359 126 0 31 389 24 382 5.44e-166 470
MsG0280007962.01.T01 MTR_2g437960 51.453 344 164 2 49 389 55 398 5.03e-121 357
MsG0280007962.01.T01 MTR_2g437170 49.614 389 177 5 20 389 14 402 6.32e-121 357
MsG0280007962.01.T01 MTR_2g437960 51.453 344 164 2 49 389 55 398 8.43e-121 357
MsG0280007962.01.T01 MTR_4g119550 50.725 345 167 2 43 386 47 389 5.68e-120 353
MsG0280007962.01.T01 MTR_2g437200 49.333 375 150 3 41 377 26 398 1.97e-118 350
MsG0280007962.01.T01 MTR_2g437160 49.344 381 179 4 22 389 28 407 3.24e-118 350
MsG0280007962.01.T01 MTR_2g437150 48.586 389 181 5 20 389 14 402 7.25e-118 348
MsG0280007962.01.T01 MTR_2g437120 49.062 373 186 2 21 390 25 396 1.70e-117 348
MsG0280007962.01.T01 MTR_2g437990 47.934 363 181 2 35 389 32 394 8.32e-114 339
MsG0280007962.01.T01 MTR_2g437260 49.107 336 167 3 43 376 32 365 2.44e-113 337
MsG0280007962.01.T01 MTR_2g076320 47.967 369 173 3 35 389 32 395 3.56e-113 336
MsG0280007962.01.T01 MTR_2g437180 49.718 354 171 4 39 389 43 392 4.89e-113 336
MsG0280007962.01.T01 MTR_2g437130 47.215 377 173 5 24 389 22 383 5.66e-112 333
MsG0280007962.01.T01 MTR_2g438010 46.995 366 181 3 35 389 52 415 8.79e-111 331
MsG0280007962.01.T01 MTR_2g437240 45.876 388 166 4 42 389 27 410 1.46e-110 330
MsG0280007962.01.T01 MTR_2g437100 52.695 334 153 3 49 377 62 395 4.02e-110 329
MsG0280007962.01.T01 MTR_2g436460 46.087 345 183 2 37 380 37 379 1.01e-106 319
MsG0280007962.01.T01 MTR_2g436370 77.551 196 43 1 1 196 1 195 3.27e-105 309
MsG0280007962.01.T01 MTR_2g438020 45.503 378 166 3 46 385 70 445 1.04e-103 315
MsG0280007962.01.T01 MTR_2g437940 46.561 378 164 6 22 389 17 366 2.94e-102 307
MsG0280007962.01.T01 MTR_2g019840 45.430 372 190 6 13 381 14 375 2.95e-98 298
MsG0280007962.01.T01 MTR_4g120380 41.910 377 210 4 1 375 1 370 1.58e-95 290
MsG0280007962.01.T01 MTR_4g119580 44.277 332 183 1 44 375 41 370 1.73e-94 288
MsG0280007962.01.T01 MTR_2g019810 42.935 368 200 5 14 379 2 361 2.63e-92 282
MsG0280007962.01.T01 MTR_4g120380 42.017 357 198 4 1 355 1 350 2.89e-89 276
MsG0280007962.01.T01 MTR_2g437090 67.456 169 55 0 220 388 1 169 8.15e-78 238
MsG0280007962.01.T01 MTR_2g437160 53.431 204 92 1 189 389 113 316 4.70e-67 215
MsG0280007962.01.T01 MTR_3g450500 32.840 338 215 4 48 377 39 372 1.91e-56 189
MsG0280007962.01.T01 MTR_4g007490 31.233 365 238 7 25 379 11 372 1.07e-51 177
MsG0280007962.01.T01 MTR_4g119570 38.057 247 120 1 127 373 14 227 5.13e-51 171
MsG0280007962.01.T01 MTR_8g080990 29.831 295 204 2 80 371 74 368 2.05e-35 134
MsG0280007962.01.T01 MTR_8g081000 25.836 329 236 3 63 388 70 393 3.26e-31 123
MsG0280007962.01.T01 MTR_8g081000 26.266 316 230 2 63 375 70 385 3.52e-31 122
MsG0280007962.01.T01 MTR_8g081000 26.266 316 230 2 63 375 70 385 3.58e-31 122
MsG0280007962.01.T01 MTR_2g436380 85.246 61 9 0 220 280 1 61 4.21e-28 112
MsG0280007962.01.T01 MTR_4g049400 41.228 114 63 1 39 148 38 151 4.07e-19 85.9
MsG0280007962.01.T01 MTR_3g085240 35.938 128 73 2 42 169 52 170 1.81e-15 75.9
MsG0280007962.01.T01 MTR_3g085240 64.151 53 19 0 279 331 176 228 2.55e-15 75.5
MsG0280007962.01.T01 MTR_4g119615 60.000 50 20 0 319 368 26 75 7.65e-14 67.4
MsG0280007962.01.T01 MTR_8g012210 22.449 294 221 6 92 380 62 353 7.16e-13 69.7
MsG0280007962.01.T01 MTR_2g019830 54.545 66 29 1 312 377 135 199 6.42e-11 62.0
MsG0280007962.01.T01 MTR_2g034600 24.254 268 191 7 86 345 215 478 8.18e-11 63.9
MsG0280007962.01.T01 MTR_2g034600 24.254 268 191 7 86 345 276 539 9.23e-11 63.9
MsG0280007962.01.T01 MTR_2g034600 24.254 268 191 7 86 345 280 543 9.53e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007962.01.T01 AT5G07900 32.727 385 238 8 9 384 32 404 2.37e-64 211
MsG0280007962.01.T01 AT1G21150 29.226 349 237 5 37 378 9 354 8.95e-46 161
MsG0280007962.01.T01 AT1G21150 30.178 338 226 5 48 378 56 390 1.78e-45 161
MsG0280007962.01.T01 AT1G21150 30.178 338 226 5 48 378 120 454 7.65e-45 161
MsG0280007962.01.T01 AT1G61980 29.539 369 213 8 48 374 52 415 6.92e-39 144
MsG0280007962.01.T01 AT1G61980 29.539 369 213 8 48 374 52 415 6.92e-39 144
MsG0280007962.01.T01 AT1G61980 29.539 369 213 8 48 374 52 415 6.92e-39 144
MsG0280007962.01.T01 AT1G62120 27.475 404 239 10 8 366 17 411 4.80e-36 137
MsG0280007962.01.T01 AT1G61970 28.977 352 205 7 49 360 53 399 1.01e-35 135
MsG0280007962.01.T01 AT1G61970 28.977 352 205 7 49 360 53 399 1.01e-35 135
MsG0280007962.01.T01 AT1G61970 28.977 352 205 7 49 360 53 399 1.01e-35 135
MsG0280007962.01.T01 AT1G61970 28.977 352 205 7 49 360 53 399 1.01e-35 135
MsG0280007962.01.T01 AT1G61970 28.977 352 205 7 49 360 53 399 1.01e-35 135
MsG0280007962.01.T01 AT1G61970 28.977 352 205 7 49 360 53 399 1.01e-35 135
MsG0280007962.01.T01 AT1G61970 28.977 352 205 7 49 360 53 399 1.01e-35 135
MsG0280007962.01.T01 AT3G46950 24.558 452 240 10 8 378 17 448 2.20e-34 132
MsG0280007962.01.T01 AT1G62085 28.788 396 200 12 48 366 55 445 2.51e-34 132
MsG0280007962.01.T01 AT1G62085 28.788 396 200 12 48 366 55 445 2.51e-34 132
MsG0280007962.01.T01 AT1G61990 28.649 370 206 9 49 374 53 408 1.09e-32 127
MsG0280007962.01.T01 AT1G61990 28.649 370 206 9 49 374 53 408 1.09e-32 127
MsG0280007962.01.T01 AT5G64950 29.577 355 233 7 36 375 24 376 2.02e-31 123
MsG0280007962.01.T01 AT1G62010 26.543 324 197 6 81 366 69 389 8.31e-29 116
MsG0280007962.01.T01 AT1G62110 27.740 292 189 5 8 290 17 295 2.76e-26 110
MsG0280007962.01.T01 AT1G62110 19.263 353 238 9 54 361 90 440 9.29e-11 63.5
MsG0280007962.01.T01 AT1G61960 31.760 233 155 3 49 279 53 283 6.31e-26 108
MsG0280007962.01.T01 AT5G23930 24.611 386 219 9 48 365 55 436 2.51e-25 107
MsG0280007962.01.T01 AT1G62150 24.205 409 226 13 42 373 52 453 1.40e-24 105
MsG0280007962.01.T01 AT1G56380 23.784 370 218 13 49 366 28 385 1.38e-15 78.2
MsG0280007962.01.T01 AT1G56380 23.784 370 218 13 49 366 17 374 1.47e-15 78.2

Find 82 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATCTGACAAGGAAATTT+TGG 0.116874 2:+23771380 MsG0280007962.01.T01:CDS
TCCTACCTCATCCACAATTT+TGG 0.170865 2:+23771039 MsG0280007962.01.T01:CDS
GGAAAGGAGGGTTAGGGTTT+AGG 0.171082 2:-23770972 None:intergenic
GTGAAGGAATTAAAGGATTT+GGG 0.230293 2:+23771555 MsG0280007962.01.T01:CDS
GAAAGGAGGGTTAGGGTTTA+GGG 0.240541 2:-23770971 None:intergenic
TTAATTTAGTGATGAGCTTT+TGG 0.242008 2:+23771751 MsG0280007962.01.T01:CDS
AAACTTTGGCAACACTCTTT+TGG 0.243647 2:-23771229 None:intergenic
CTCACATTCTTTAGAAACTA+TGG 0.247629 2:+23771141 MsG0280007962.01.T01:CDS
AGACCAACCCCATTTCTTAA+AGG 0.251614 2:-23771664 None:intergenic
TCGCAATCATATCGCGTAGA+TGG 0.267406 2:-23771176 None:intergenic
AACCTTTGTTGAGAAGAAAT+TGG 0.277746 2:-23771872 None:intergenic
GGTGAAGGAATTAAAGGATT+TGG 0.282534 2:+23771554 MsG0280007962.01.T01:CDS
TTAGGGTTTGTGATGTTTGT+GGG 0.292465 2:-23770954 None:intergenic
GGACAAAATAGAAGGTGTTT+TGG 0.307937 2:-23771808 None:intergenic
CTTGTAGGTGGAGCAGAGTT+TGG 0.314073 2:-23771082 None:intergenic
TGTTCAACTTCAATTCTTCA+TGG 0.315566 2:+23770887 MsG0280007962.01.T01:CDS
AAATGGTGGAAAGGAGGGTT+AGG 0.324779 2:-23770979 None:intergenic
TTGGGTCAATCAGTTGGGTT+GGG 0.365374 2:+23771770 MsG0280007962.01.T01:CDS
TGAGAACAGAATCAGGGTTT+TGG 0.365479 2:-23771122 None:intergenic
AAGTTGATGCCTTTAAGAAA+TGG 0.366199 2:+23771655 MsG0280007962.01.T01:CDS
AGTTGATGCCTTTAAGAAAT+GGG 0.371481 2:+23771656 MsG0280007962.01.T01:CDS
AAGAATGTGAGAACAGAATC+AGG 0.380895 2:-23771129 None:intergenic
TTTAGGGTTTGTGATGTTTG+TGG 0.384631 2:-23770955 None:intergenic
GTCAGAGTTAGAAGCACCTT+TGG 0.395726 2:-23771265 None:intergenic
GGAGTCGGTGAAGGAATTAA+AGG 0.411444 2:+23771548 MsG0280007962.01.T01:CDS
AACTTATCAGTCACTACAAA+TGG 0.416436 2:-23771924 None:intergenic
AAACTTGAGGACAAAATAGA+AGG 0.426281 2:-23771816 None:intergenic
CATCAACTTTCTCTTTCCAT+AGG 0.426803 2:-23771641 None:intergenic
TTTGGGTCAATCAGTTGGGT+TGG 0.429067 2:+23771769 MsG0280007962.01.T01:CDS
CAAACATTAAGAGATTGCTT+AGG 0.441978 2:+23771490 MsG0280007962.01.T01:CDS
ATGGATGTTAACATAGAATA+CGG 0.449284 2:-23771720 None:intergenic
AATAGTCCCAGCCTATGAAT+TGG 0.452259 2:+23771344 MsG0280007962.01.T01:CDS
GGGTCGCAGGAAAGCAACTC+TGG 0.453504 2:-23771204 None:intergenic
CTGAAGTGTTGGTGCAGAAA+TGG 0.455082 2:-23770996 None:intergenic
AGCCTTTGAGATAATAGATT+AGG 0.460211 2:-23770924 None:intergenic
AAACATTAAGAGATTGCTTA+GGG 0.463302 2:+23771491 MsG0280007962.01.T01:CDS
CGCAATCATATCGCGTAGAT+GGG 0.463466 2:-23771175 None:intergenic
GAATCTGTACACCAATTCAT+AGG 0.473956 2:-23771355 None:intergenic
ATTGCTTAGGGAACAAAGTC+GGG 0.475223 2:+23771503 MsG0280007962.01.T01:CDS
AGGCTTACATTCAAGACTCT+AGG 0.481486 2:-23771312 None:intergenic
CTGTACACCAATTCATAGGC+TGG 0.485721 2:-23771351 None:intergenic
CTGGGACTATTTGTTTGTTG+AGG 0.489503 2:-23771332 None:intergenic
AATTGGACAACAGCGGCCCT+TGG 0.490519 2:-23771855 None:intergenic
CAGAGTTTGGAAGCAGATTG+TGG 0.492532 2:-23771069 None:intergenic
AGTCTTGAAACGGAGCTTGT+AGG 0.492820 2:-23771097 None:intergenic
GGCTTACATTCAAGACTCTA+GGG 0.494051 2:-23771311 None:intergenic
AATGGTGGAAAGGAGGGTTA+GGG 0.494624 2:-23770978 None:intergenic
CAAAACCAAAATTGTGGATG+AGG 0.498093 2:-23771044 None:intergenic
ATCACAATGCTGATAGAGAA+TGG 0.502697 2:+23771456 MsG0280007962.01.T01:CDS
GTGCAGAAATGGTGGAAAGG+AGG 0.507131 2:-23770985 None:intergenic
TGCAGAAATGGTGGAAAGGA+GGG 0.508537 2:-23770984 None:intergenic
AGAGTTTGGAAGCAGATTGT+GGG 0.513374 2:-23771068 None:intergenic
ATCAACTTTCTCTTTCCATA+GGG 0.514164 2:-23771640 None:intergenic
GTCCAATTTCTTCTCAACAA+AGG 0.517975 2:+23771870 MsG0280007962.01.T01:CDS
CATCTGTAAACAAAACCCTA+TGG 0.523362 2:+23771625 MsG0280007962.01.T01:CDS
ATTCAAGACACGTGACATGC+TGG 0.530417 2:+23771527 MsG0280007962.01.T01:CDS
TCAGTTGGGTTGGGATGCTA+AGG 0.533835 2:+23771779 MsG0280007962.01.T01:CDS
AACCTAATCTATTATCTCAA+AGG 0.537458 2:+23770922 MsG0280007962.01.T01:CDS
TAGGGTTTGTGATGTTTGTG+GGG 0.539539 2:-23770953 None:intergenic
GATTGCTTAGGGAACAAAGT+CGG 0.551762 2:+23771502 MsG0280007962.01.T01:CDS
GAGGTAGGAGACTGCAAAAG+AGG 0.555968 2:-23771025 None:intergenic
AATAGATTAGGTTTCTTCTG+TGG 0.556392 2:-23770912 None:intergenic
TGACATGCATGTCTTGTCCC+TGG 0.559585 2:-23772033 None:intergenic
CAATCTCTTAATGTTTGAGT+CGG 0.570421 2:-23771484 None:intergenic
GTTGATGCCTTTAAGAAATG+GGG 0.573670 2:+23771657 MsG0280007962.01.T01:CDS
CAGATTCTTGCAATCTGACA+AGG 0.575407 2:+23771371 MsG0280007962.01.T01:CDS
AACGCAATCTTGGATACACC+AGG 0.592253 2:+23772015 MsG0280007962.01.T01:CDS
TGAAGGAATTAAAGGATTTG+GGG 0.597102 2:+23771556 MsG0280007962.01.T01:CDS
ACCAAAATTGTGGATGAGGT+AGG 0.597396 2:-23771040 None:intergenic
ATGCCTTTAAGAAATGGGGT+TGG 0.598819 2:+23771661 MsG0280007962.01.T01:CDS
TGTACACCAATTCATAGGCT+GGG 0.603503 2:-23771350 None:intergenic
TGACATGCTGGAGTCGGTGA+AGG 0.604011 2:+23771539 MsG0280007962.01.T01:CDS
CTTGAAACGGAGCTTGTAGG+TGG 0.607975 2:-23771094 None:intergenic
GACACGTGACATGCTGGAGT+CGG 0.615033 2:+23771533 MsG0280007962.01.T01:CDS
AGAGGTTGAATCTGAAGTGT+TGG 0.619487 2:-23771007 None:intergenic
AGAATGTGAGAACAGAATCA+GGG 0.624146 2:-23771128 None:intergenic
GTGGGTCAAAACCAAAATTG+TGG 0.624358 2:-23771050 None:intergenic
TTGGTGCAGAAATGGTGGAA+AGG 0.632944 2:-23770988 None:intergenic
AAGTGTTGGTGCAGAAATGG+TGG 0.640434 2:-23770993 None:intergenic
ATCTACGCGATATGATTGCG+AGG 0.675934 2:+23771178 MsG0280007962.01.T01:CDS
GAGAAGAAATTGGACAACAG+CGG 0.698982 2:-23771862 None:intergenic
ACGCAATCTTGGATACACCA+GGG 0.724913 2:+23772016 MsG0280007962.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CACTAAATTAATTTTATCAA+TGG - Chr2:23771742-23771761 None:intergenic 15.0%
!!! AATCCTTCAAAAATAACTTT+TGG + Chr2:23771582-23771601 MsG0280007962.01.T01:CDS 20.0%
!!! ATACCAAAAGTTATTTTTGA+AGG - Chr2:23771588-23771607 None:intergenic 20.0%
!!! TTATCTTTTAAAGTTGTATG+AGG + Chr2:23771989-23772008 MsG0280007962.01.T01:CDS 20.0%
! AAACATTAAGAGATTGCTTA+GGG + Chr2:23771491-23771510 MsG0280007962.01.T01:CDS 25.0%
! AACCTAATCTATTATCTCAA+AGG + Chr2:23770922-23770941 MsG0280007962.01.T01:CDS 25.0%
! ATGGATGTTAACATAGAATA+CGG - Chr2:23771723-23771742 None:intergenic 25.0%
! GAGAGAAAAAATTGAAACTT+TGG - Chr2:23771246-23771265 None:intergenic 25.0%
!! TAATTTAGTGATGAGCTTTT+GGG + Chr2:23771752-23771771 MsG0280007962.01.T01:CDS 25.0%
!! TTAATTTAGTGATGAGCTTT+TGG + Chr2:23771751-23771770 MsG0280007962.01.T01:CDS 25.0%
!!! TATAAAACGTTTTGAGAATG+AGG + Chr2:23771962-23771981 MsG0280007962.01.T01:CDS 25.0%
!!! TTTCAATTTTTTCTCTCCAA+AGG + Chr2:23771249-23771268 MsG0280007962.01.T01:CDS 25.0%
AAACTTGAGGACAAAATAGA+AGG - Chr2:23771819-23771838 None:intergenic 30.0%
AACCTTTGTTGAGAAGAAAT+TGG - Chr2:23771875-23771894 None:intergenic 30.0%
AACTTATCAGTCACTACAAA+TGG - Chr2:23771927-23771946 None:intergenic 30.0%
AATAGATTAGGTTTCTTCTG+TGG - Chr2:23770915-23770934 None:intergenic 30.0%
ATCAACTTTCTCTTTCCATA+GGG - Chr2:23771643-23771662 None:intergenic 30.0%
CAAACATTAAGAGATTGCTT+AGG + Chr2:23771490-23771509 MsG0280007962.01.T01:CDS 30.0%
CAATCTCTTAATGTTTGAGT+CGG - Chr2:23771487-23771506 None:intergenic 30.0%
GTGAAGGAATTAAAGGATTT+GGG + Chr2:23771555-23771574 MsG0280007962.01.T01:CDS 30.0%
TGAAGGAATTAAAGGATTTG+GGG + Chr2:23771556-23771575 MsG0280007962.01.T01:CDS 30.0%
TGTTCAACTTCAATTCTTCA+TGG + Chr2:23770887-23770906 MsG0280007962.01.T01:CDS 30.0%
! AGTTGATGCCTTTAAGAAAT+GGG + Chr2:23771656-23771675 MsG0280007962.01.T01:CDS 30.0%
! CTCACATTCTTTAGAAACTA+TGG + Chr2:23771141-23771160 MsG0280007962.01.T01:CDS 30.0%
! TTCTATTTTGTCCTCAAGTT+TGG + Chr2:23771818-23771837 MsG0280007962.01.T01:CDS 30.0%
!! AAGTTGATGCCTTTAAGAAA+TGG + Chr2:23771655-23771674 MsG0280007962.01.T01:CDS 30.0%
!! AGCCTTTGAGATAATAGATT+AGG - Chr2:23770927-23770946 None:intergenic 30.0%
!!! GGTTTTGTTTACAGATGTTT+TGG - Chr2:23771622-23771641 None:intergenic 30.0%
AAGAATGTGAGAACAGAATC+AGG - Chr2:23771132-23771151 None:intergenic 35.0%
AGAATGTGAGAACAGAATCA+GGG - Chr2:23771131-23771150 None:intergenic 35.0%
ATCACAATGCTGATAGAGAA+TGG + Chr2:23771456-23771475 MsG0280007962.01.T01:CDS 35.0%
CAAAACCAAAATTGTGGATG+AGG - Chr2:23771047-23771066 None:intergenic 35.0%
CATCAACTTTCTCTTTCCAT+AGG - Chr2:23771644-23771663 None:intergenic 35.0%
CATCTGTAAACAAAACCCTA+TGG + Chr2:23771625-23771644 MsG0280007962.01.T01:CDS 35.0%
GAATCTGTACACCAATTCAT+AGG - Chr2:23771358-23771377 None:intergenic 35.0%
GGAAAAAAGGATCATTCCAA+GGG + Chr2:23771839-23771858 MsG0280007962.01.T01:CDS 35.0%
GGTGAAGGAATTAAAGGATT+TGG + Chr2:23771554-23771573 MsG0280007962.01.T01:CDS 35.0%
GTCCAATTTCTTCTCAACAA+AGG + Chr2:23771870-23771889 MsG0280007962.01.T01:CDS 35.0%
TATGAGGAAAAACGCAATCT+TGG + Chr2:23772005-23772024 MsG0280007962.01.T01:CDS 35.0%
TGGAAAAAAGGATCATTCCA+AGG + Chr2:23771838-23771857 MsG0280007962.01.T01:CDS 35.0%
TGTCCTCAAGTTTGGAAAAA+AGG + Chr2:23771826-23771845 MsG0280007962.01.T01:CDS 35.0%
TTAGGGTTTGTGATGTTTGT+GGG - Chr2:23770957-23770976 None:intergenic 35.0%
! AAACTTTGGCAACACTCTTT+TGG - Chr2:23771232-23771251 None:intergenic 35.0%
! GCAATCTGACAAGGAAATTT+TGG + Chr2:23771380-23771399 MsG0280007962.01.T01:CDS 35.0%
! GTTGATGCCTTTAAGAAATG+GGG + Chr2:23771657-23771676 MsG0280007962.01.T01:CDS 35.0%
! TTTAGGGTTTGTGATGTTTG+TGG - Chr2:23770958-23770977 None:intergenic 35.0%
!!! GATCCTTTTTTCCAAACTTG+AGG - Chr2:23771832-23771851 None:intergenic 35.0%
!!! GGACAAAATAGAAGGTGTTT+TGG - Chr2:23771811-23771830 None:intergenic 35.0%
AATAGTCCCAGCCTATGAAT+TGG + Chr2:23771344-23771363 MsG0280007962.01.T01:CDS 40.0%
ACCAAAATTGTGGATGAGGT+AGG - Chr2:23771043-23771062 None:intergenic 40.0%
AGACCAACCCCATTTCTTAA+AGG - Chr2:23771667-23771686 None:intergenic 40.0%
AGAGTTTGGAAGCAGATTGT+GGG - Chr2:23771071-23771090 None:intergenic 40.0%
AGGCTTACATTCAAGACTCT+AGG - Chr2:23771315-23771334 None:intergenic 40.0%
ATTGCTTAGGGAACAAAGTC+GGG + Chr2:23771503-23771522 MsG0280007962.01.T01:CDS 40.0%
CAGATTCTTGCAATCTGACA+AGG + Chr2:23771371-23771390 MsG0280007962.01.T01:CDS 40.0%
GAGAAGAAATTGGACAACAG+CGG - Chr2:23771865-23771884 None:intergenic 40.0%
GATTGCTTAGGGAACAAAGT+CGG + Chr2:23771502-23771521 MsG0280007962.01.T01:CDS 40.0%
GGCTTACATTCAAGACTCTA+GGG - Chr2:23771314-23771333 None:intergenic 40.0%
GTGGGTCAAAACCAAAATTG+TGG - Chr2:23771053-23771072 None:intergenic 40.0%
TAGGGTTTGTGATGTTTGTG+GGG - Chr2:23770956-23770975 None:intergenic 40.0%
TGTACACCAATTCATAGGCT+GGG - Chr2:23771353-23771372 None:intergenic 40.0%
! AGAGGTTGAATCTGAAGTGT+TGG - Chr2:23771010-23771029 None:intergenic 40.0%
! ATGCCTTTAAGAAATGGGGT+TGG + Chr2:23771661-23771680 MsG0280007962.01.T01:CDS 40.0%
! CTGGGACTATTTGTTTGTTG+AGG - Chr2:23771335-23771354 None:intergenic 40.0%
! TCCTACCTCATCCACAATTT+TGG + Chr2:23771039-23771058 MsG0280007962.01.T01:CDS 40.0%
! TGAGAACAGAATCAGGGTTT+TGG - Chr2:23771125-23771144 None:intergenic 40.0%
! TTTGGCAACACTCTTTTGGA+GGG - Chr2:23771228-23771247 None:intergenic 40.0%
!! AGCTTTTGGGTCAATCAGTT+GGG + Chr2:23771765-23771784 MsG0280007962.01.T01:CDS 40.0%
!! GGTTTTGGTGAGTCTTGAAA+CGG - Chr2:23771110-23771129 None:intergenic 40.0%
AACGCAATCTTGGATACACC+AGG + Chr2:23772015-23772034 MsG0280007962.01.T01:CDS 45.0%
ACGCAATCTTGGATACACCA+GGG + Chr2:23772016-23772035 MsG0280007962.01.T01:CDS 45.0%
AGTCTTGAAACGGAGCTTGT+AGG - Chr2:23771100-23771119 None:intergenic 45.0%
ATCTACGCGATATGATTGCG+AGG + Chr2:23771178-23771197 MsG0280007962.01.T01:CDS 45.0%
ATTCAAGACACGTGACATGC+TGG + Chr2:23771527-23771546 MsG0280007962.01.T01:CDS 45.0%
CAGAGTTTGGAAGCAGATTG+TGG - Chr2:23771072-23771091 None:intergenic 45.0%
CGCAATCATATCGCGTAGAT+GGG - Chr2:23771178-23771197 None:intergenic 45.0%
CTGTACACCAATTCATAGGC+TGG - Chr2:23771354-23771373 None:intergenic 45.0%
GAAAGGAGGGTTAGGGTTTA+GGG - Chr2:23770974-23770993 None:intergenic 45.0%
GGAGTCGGTGAAGGAATTAA+AGG + Chr2:23771548-23771567 MsG0280007962.01.T01:CDS 45.0%
TCGCAATCATATCGCGTAGA+TGG - Chr2:23771179-23771198 None:intergenic 45.0%
TTGGGTCAATCAGTTGGGTT+GGG + Chr2:23771770-23771789 MsG0280007962.01.T01:CDS 45.0%
TTTGGGTCAATCAGTTGGGT+TGG + Chr2:23771769-23771788 MsG0280007962.01.T01:CDS 45.0%
! AAATGGTGGAAAGGAGGGTT+AGG - Chr2:23770982-23771001 None:intergenic 45.0%
! AATGGTGGAAAGGAGGGTTA+GGG - Chr2:23770981-23771000 None:intergenic 45.0%
! CTTTGGCAACACTCTTTTGG+AGG - Chr2:23771229-23771248 None:intergenic 45.0%
! TGCAGAAATGGTGGAAAGGA+GGG - Chr2:23770987-23771006 None:intergenic 45.0%
! TTGGTGCAGAAATGGTGGAA+AGG - Chr2:23770991-23771010 None:intergenic 45.0%
!! AAGTGTTGGTGCAGAAATGG+TGG - Chr2:23770996-23771015 None:intergenic 45.0%
!! CTGAAGTGTTGGTGCAGAAA+TGG - Chr2:23770999-23771018 None:intergenic 45.0%
!! GAGCTTTTGGGTCAATCAGT+TGG + Chr2:23771764-23771783 MsG0280007962.01.T01:CDS 45.0%
!! GTCAGAGTTAGAAGCACCTT+TGG - Chr2:23771268-23771287 None:intergenic 45.0%
!! TTGGCAACACTCTTTTGGAG+GGG - Chr2:23771227-23771246 None:intergenic 45.0%
CTTGAAACGGAGCTTGTAGG+TGG - Chr2:23771097-23771116 None:intergenic 50.0%
CTTGTAGGTGGAGCAGAGTT+TGG - Chr2:23771085-23771104 None:intergenic 50.0%
GAGGTAGGAGACTGCAAAAG+AGG - Chr2:23771028-23771047 None:intergenic 50.0%
GGAAAGGAGGGTTAGGGTTT+AGG - Chr2:23770975-23770994 None:intergenic 50.0%
TGACATGCATGTCTTGTCCC+TGG - Chr2:23772036-23772055 None:intergenic 50.0%
! GTGCAGAAATGGTGGAAAGG+AGG - Chr2:23770988-23771007 None:intergenic 50.0%
!! TCAGTTGGGTTGGGATGCTA+AGG + Chr2:23771779-23771798 MsG0280007962.01.T01:CDS 50.0%
AATTGGACAACAGCGGCCCT+TGG - Chr2:23771858-23771877 None:intergenic 55.0%
GACACGTGACATGCTGGAGT+CGG + Chr2:23771533-23771552 MsG0280007962.01.T01:CDS 55.0%
TGACATGCTGGAGTCGGTGA+AGG + Chr2:23771539-23771558 MsG0280007962.01.T01:CDS 55.0%
GGGTCGCAGGAAAGCAACTC+TGG - Chr2:23771207-23771226 None:intergenic 60.0%
!! CACTCTTTTGGAGGGGTCGC+AGG - Chr2:23771220-23771239 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 23770886 23772058 23770886 ID=MsG0280007962.01;Name=MsG0280007962.01
Chr2 mRNA 23770886 23772058 23770886 ID=MsG0280007962.01.T01;Parent=MsG0280007962.01;Name=MsG0280007962.01.T01;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|390
Chr2 exon 23770886 23772058 23770886 ID=MsG0280007962.01.T01:exon:3026;Parent=MsG0280007962.01.T01
Chr2 CDS 23770886 23772058 23770886 ID=MsG0280007962.01.T01:cds;Parent=MsG0280007962.01.T01
Gene Sequence

>MsG0280007962.01.T01

ATGTTCAACTTCAATTCTTCATGGCGCCACAGAAGAAACCTAATCTATTATCTCAAAGGCTTCACTACCCCACAAACATCACAAACCCTAAACCCTAACCCTCCTTTCCACCATTTCTGCACCAACACTTCAGATTCAACCTCTTTTGCAGTCTCCTACCTCATCCACAATTTTGGTTTTGACCCACAATCTGCTTCCAAACTCTGCTCCACCTACAAGCTCCGTTTCAAGACTCACCAAAACCCTGATTCTGTTCTCACATTCTTTAGAAACTATGGTTTCTCTGATTCCCATCTACGCGATATGATTGCGAGGATGCCAGAGTTGCTTTCCTGCGACCCCTCCAAAAGAGTGTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTAACTCTGACATTGTTAACATTTTCAGTAAGAACCCTAGAGTCTTGAATGTAAGCCTCAACAAACAAATAGTCCCAGCCTATGAATTGGTGTACAGATTCTTGCAATCTGACAAGGAAATTTTGGAAAAGTTGAATTACAGTGCAAATTTACTTTGTGATTGTACTGTGCAAAATAACATCACAATGCTGATAGAGAATGGAGTGTCCGACTCAAACATTAAGAGATTGCTTAGGGAACAAAGTCGGGTATTCAAGACACGTGACATGCTGGAGTCGGTGAAGGAATTAAAGGATTTGGGGTTTAATCCTTCAAAAATAACTTTTGGTATAGCATTGCATGCCAAAACATCTGTAAACAAAACCCTATGGAAAGAGAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCTGAAGAAGATTCTCTTAAAGCATTTAGAAAGAAACCGTATTCTATGTTAACATCCATTGATAAAATTAATTTAGTGATGAGCTTTTGGGTCAATCAGTTGGGTTGGGATGCTAAGGACATTGCCAAAACACCTTCTATTTTGTCCTCAAGTTTGGAAAAAAGGATCATTCCAAGGGCCGCTGTTGTCCAATTTCTTCTCAACAAAGGTTTGACAAATAAGAATGCAAGCTTAACTTATCCATTTGTAGTGACTGATAAGTTGTTTCTTAATATGTTTATAAAACGTTTTGAGAATGAGGCTTCTTATCTTTTAAAGTTGTATGAGGAAAAACGCAATCTTGGATACACCAGGGACAAGACATGCATGTCATGA
Protein sequence

>MsG0280007962.01.T01

MFNFNSSWRHRRNLIYYLKGFTTPQTSQTLNPNPPFHHFCTNTSDSTSFAVSYLIHNFGFDPQSASKLCSTYKLRFKTHQNPDSVLTFFRNYGFSDSHLRDMIARMPELLSCDPSKRVLPKFQFFLSKGASNSDIVNIFSKNPRVLNVSLNKQIVPAYELVYRFLQSDKEILEKLNYSANLLCDCTVQNNITMLIENGVSDSNIKRLLREQSRVFKTRDMLESVKELKDLGFNPSKITFGIALHAKTSVNKTLWKEKVDAFKKWGWSEEDSLKAFRKKPYSMLTSIDKINLVMSFWVNQLGWDAKDIAKTPSILSSSLEKRIIPRAAVVQFLLNKGLTNKNASLTYPFVVTDKLFLNMFIKRFENEASYLLKLYEEKRNLGYTRDKTCMS*