AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008001.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008001.01.T01 MTR_8g040560 46.000 150 76 2 263 408 806 954 1.64e-26 114
MsG0280008001.01.T01 MTR_8g040560 50.588 85 42 0 392 476 801 885 1.71e-21 98.6
MsG0280008001.01.T01 MTR_8g040560 35.484 155 67 8 5 137 428 571 1.20e-13 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008001.01.T01 AT3G12280 32.787 183 81 8 11 162 426 597 9.86e-17 84.0
MsG0280008001.01.T01 AT3G12280 42.537 134 65 6 263 396 797 918 1.33e-16 83.6
MsG0280008001.01.T01 AT3G12280 53.247 77 32 2 392 468 792 864 2.11e-16 82.8
MsG0280008001.01.T01 AT3G12280 32.787 183 81 8 11 162 426 597 9.86e-17 84.0
MsG0280008001.01.T01 AT3G12280 42.537 134 65 6 263 396 797 918 1.33e-16 83.6
MsG0280008001.01.T01 AT3G12280 53.247 77 32 2 392 468 792 864 2.11e-16 82.8

Find 105 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGGAAAGGTAATATTTC+AGG 0.192841 2:+24157850 None:intergenic
CTCTGTAGAGTCACTACTTT+TGG 0.216812 2:-24155618 MsG0280008001.01.T01:CDS
AGTATTTCATGTAGTGTTTC+GGG 0.247285 2:+24160280 None:intergenic
AGACTATATTTCCTGATAAT+TGG 0.251144 2:-24160387 MsG0280008001.01.T01:CDS
AATTAACAACTTCAGCTAAT+TGG 0.268835 2:+24158999 None:intergenic
TGTTTCGGGCTCCTTCTTCT+TGG 0.285142 2:+24160294 None:intergenic
TTTCTATTCGGCCAATTATC+AGG 0.291015 2:+24160376 None:intergenic
TAGTATTTCATGTAGTGTTT+CGG 0.335939 2:+24160279 None:intergenic
TGCTGCTGGTGCGAGTTATT+TGG 0.349200 2:+24160200 None:intergenic
CACATGCAAGCAAACATCTA+TGG 0.358139 2:+24160242 None:intergenic
TACTTACCTCTTTGTTTGCC+TGG 0.364580 2:-24158966 MsG0280008001.01.T01:CDS
AATCTTCGGATCTTTCTATT+CGG 0.373694 2:+24160364 None:intergenic
CAAGTCAGGGGTTGCAGAAC+TGG 0.373973 2:+24158901 None:intergenic
CGTATTTGTTGATTGGTCAT+TGG 0.390654 2:-24155723 MsG0280008001.01.T01:CDS
TTGATAGCGTATTTGTTGAT+TGG 0.394006 2:-24155730 MsG0280008001.01.T01:CDS
TCAGCATTTGGTAAAACAAT+AGG 0.401763 2:-24155689 MsG0280008001.01.T01:CDS
TTCATAGTGAATTTGCTGAT+TGG 0.403484 2:-24158181 MsG0280008001.01.T01:CDS
GCATGCAAGGACTCAGCATT+TGG 0.404602 2:-24155701 MsG0280008001.01.T01:CDS
CTACATTTCGTTGTGAAGTT+GGG 0.407614 2:+24160488 None:intergenic
CTATAATCCCTGGAAAAGTT+AGG 0.408836 2:+24158243 None:intergenic
GCATGCCTAGACCCGTCATA+TGG 0.410401 2:-24158152 MsG0280008001.01.T01:CDS
CATCTTTGTCACAGTGCTGC+TGG 0.413867 2:+24160186 None:intergenic
TACTTTATACTATACAGTAT+TGG 0.418535 2:-24160332 MsG0280008001.01.T01:CDS
TCTACATTTCGTTGTGAAGT+TGG 0.424113 2:+24160487 None:intergenic
CGATGCATAACAGGAAATCT+TGG 0.427891 2:+24158815 None:intergenic
AATAGAAAATCACACAAGTC+AGG 0.430228 2:+24158887 None:intergenic
CTGCACTATATTATGTGCTC+TGG 0.435506 2:+24160408 None:intergenic
TATGCATGTGTCTCTCCAAT+AGG 0.440195 2:-24157787 MsG0280008001.01.T01:CDS
GCTCAGGACATTGAGCTAGA+TGG 0.442938 2:+24157875 None:intergenic
TCTTGAAATCATACGCATCA+TGG 0.444821 2:-24160459 MsG0280008001.01.T01:CDS
AGTACCTCAGATGATGATAA+TGG 0.449042 2:+24158755 None:intergenic
AAGATTTCCTGTTATGCATC+GGG 0.453453 2:-24158813 MsG0280008001.01.T01:CDS
CGGGCTCCTTCTTCTTGGCT+CGG 0.455002 2:+24160299 None:intergenic
CGACAGCAGCGGCTTTACAT+AGG 0.459406 2:+24158067 None:intergenic
ATCTGTATGGCCACTGGTGA+TGG 0.459470 2:-24159056 MsG0280008001.01.T01:CDS
CTCTCCAATACATAATCAGC+AGG 0.462992 2:+24160160 None:intergenic
ACACAAGACATTGAGCTAGA+TGG 0.464043 2:+24158858 None:intergenic
GGTAATATTTCAGGAGGCTC+AGG 0.464123 2:+24157859 None:intergenic
TCTGTGGCCCATCATCATTA+TGG 0.467928 2:+24159122 None:intergenic
AAGTAAGTGTATCAAATCTT+CGG 0.469338 2:+24160350 None:intergenic
AGTACCTCAGATGATCCTAT+TGG 0.469550 2:+24157772 None:intergenic
CTGGCATAGCAATGGAAGTC+GGG 0.474136 2:+24158920 None:intergenic
AGCTGAAGTTGTTAATTCAA+AGG 0.474939 2:-24158993 MsG0280008001.01.T01:CDS
CTATAGCTGGCTATAATCCC+TGG 0.480036 2:+24158233 None:intergenic
CGCTCCATCTGTATGGCCAC+TGG 0.485239 2:-24159062 MsG0280008001.01.T01:CDS
ACATATTCGCTCCATCTGTA+TGG 0.497154 2:-24159069 MsG0280008001.01.T01:CDS
GAGACGCGTAAATTTCTTGT+GGG 0.497626 2:+24158779 None:intergenic
TTGGCAGGCCATAATGATGA+TGG 0.498440 2:-24159130 MsG0280008001.01.T01:intron
CTGTGGTTGCAGTCTATAGC+TGG 0.499518 2:+24158220 None:intergenic
CAAGATTTCCTGTTATGCAT+CGG 0.503469 2:-24158814 MsG0280008001.01.T01:CDS
GATTATGTATTGGAGAGCTC+TGG 0.503799 2:-24160154 MsG0280008001.01.T01:CDS
GACAGCAGCGGCTTTACATA+GGG 0.508885 2:+24158068 None:intergenic
GTTCCCTGCTGATTATGTAT+TGG 0.512692 2:-24160164 MsG0280008001.01.T01:CDS
GATGCATAACAGGAAATCTT+GGG 0.516279 2:+24158816 None:intergenic
GAAGTTGTTAATTCAAAGGA+TGG 0.532012 2:-24158989 MsG0280008001.01.T01:CDS
CTTGAAATCATACGCATCAT+GGG 0.533418 2:-24160458 MsG0280008001.01.T01:CDS
AATTGAAAGCAAACTTAGCC+AGG 0.538671 2:+24158948 None:intergenic
CATGCCTAGACCCGTCATAT+GGG 0.538915 2:-24158151 MsG0280008001.01.T01:CDS
CAGACATAACAGGAAGGCTT+GGG 0.541418 2:+24157833 None:intergenic
ATCACCAGTGGCCATACAGA+TGG 0.542017 2:+24159058 None:intergenic
CCGTCATATGGGAAAACAAA+GGG 0.546044 2:-24158140 MsG0280008001.01.T01:CDS
ACAGACATAACAGGAAGGCT+TGG 0.546125 2:+24157832 None:intergenic
TGAATTTGCTGATTGGCCAT+TGG 0.549842 2:-24158174 MsG0280008001.01.T01:CDS
AAGCCTTCCTGTTATGTCTG+TGG 0.553212 2:-24157830 MsG0280008001.01.T01:CDS
TCCCACATCAATGTCTTACC+AGG 0.554424 2:+24160514 None:intergenic
ATCATACGCATCATGGGGCG+AGG 0.568090 2:-24160452 MsG0280008001.01.T01:CDS
CTATGTAAAGCCGCTGCTGT+CGG 0.569655 2:-24158066 MsG0280008001.01.T01:CDS
CAAAAGTAGTGACTCTACAG+AGG 0.572178 2:+24155619 None:intergenic
TGATTGGTCATTGGCATGCA+AGG 0.572680 2:-24155714 MsG0280008001.01.T01:CDS
AGTTATTTGGAGTACTTGAT+CGG 0.575426 2:+24160213 None:intergenic
ATAGAAAATCACACAAGTCA+GGG 0.575496 2:+24158888 None:intergenic
TTGCAGAACTGGCATAGCAA+TGG 0.586522 2:+24158912 None:intergenic
TGTGTGCCGAGCCAAGAAGA+AGG 0.595093 2:-24160305 MsG0280008001.01.T01:CDS
TGGCAGGCCATAATGATGAT+GGG 0.595863 2:-24159129 MsG0280008001.01.T01:intron
ATATGGGAAAACAAAGGGAC+TGG 0.596793 2:-24158135 MsG0280008001.01.T01:CDS
AGAGACGCGTAAATTTCTTG+TGG 0.598473 2:+24158778 None:intergenic
TTTGGAACTTGGCGCTGAAG+GGG 0.599163 2:-24155600 MsG0280008001.01.T01:CDS
ATCTCCTTAAAACTCAGACT+CGG 0.601227 2:+24155797 None:intergenic
GACGGGTCTAGGCATGCCAA+TGG 0.617781 2:+24158158 None:intergenic
ATAACAGGAAGGCTTGGGAA+AGG 0.618263 2:+24157838 None:intergenic
ATAATTCCAACACGCTTCTG+TGG 0.619317 2:+24159106 None:intergenic
ATAACAGGAAATCTTGGGAA+AGG 0.622579 2:+24158821 None:intergenic
CTCTCCATTATCATCATCTG+AGG 0.623327 2:-24158759 MsG0280008001.01.T01:intron
AAAAGTAGTGACTCTACAGA+GGG 0.626239 2:+24155620 None:intergenic
GATGGGCCACAGAAGCGTGT+TGG 0.626772 2:-24159112 MsG0280008001.01.T01:CDS
ACTTAGCCAGGCAAACAAAG+AGG 0.632718 2:+24158960 None:intergenic
CTTCCACAGACATAACAGGA+AGG 0.636074 2:+24157827 None:intergenic
GGGAAAGGTAATATTTCAGG+AGG 0.639440 2:+24157853 None:intergenic
TAGAAAATCACACAAGTCAG+GGG 0.641588 2:+24158889 None:intergenic
ACTGGCATAGCAATGGAAGT+CGG 0.645170 2:+24158919 None:intergenic
GAATTCATTAACAAAGCCGA+TGG 0.655551 2:-24157999 MsG0280008001.01.T01:intron
AGACGCGTAAATTTCTTGTG+GGG 0.656963 2:+24158780 None:intergenic
CTCTCCAATAGGATCATCTG+AGG 0.660685 2:-24157776 MsG0280008001.01.T01:intron
ACCTGGTAAGACATTGATGT+GGG 0.674272 2:-24160515 MsG0280008001.01.T01:CDS
GTGTAAAGTTCCGACAGCAG+CGG 0.675258 2:+24158056 None:intergenic
TTGAAATCATACGCATCATG+GGG 0.681522 2:-24160457 MsG0280008001.01.T01:CDS
CCCGTCATATGGGAAAACAA+AGG 0.682970 2:-24158141 MsG0280008001.01.T01:CDS
GTGACAAGTTCCATCACCAG+TGG 0.694389 2:+24159046 None:intergenic
CACCTGGTAAGACATTGATG+TGG 0.697380 2:-24160516 MsG0280008001.01.T01:CDS
AAAACACGTGGGTTGCACCG+TGG 0.697661 2:+24155752 None:intergenic
ACACTGTTGTGACACCTGCG+AGG 0.699379 2:-24158037 MsG0280008001.01.T01:CDS
AGAGACACATGCATAGTGTG+CGG 0.699537 2:+24157795 None:intergenic
TCTCCAATACATAATCAGCA+GGG 0.716826 2:+24160161 None:intergenic
AAAACTGGTGGTGTGTACTG+TGG 0.738141 2:+24158203 None:intergenic
GCAGCTATAAGAAGCAACCA+CGG 0.739982 2:-24155769 MsG0280008001.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTAAATTTAAAAATA+TGG + Chr2:24157486-24157505 None:intergenic 0.0%
!! AAAAAATTGTTTAAAAATGA+AGG + Chr2:24158789-24158808 None:intergenic 10.0%
!! AATAGTTAAAAAAGATAATT+TGG + Chr2:24158650-24158669 None:intergenic 10.0%
!!! AAATTATCTTTTTTAACTAT+TGG - Chr2:24158649-24158668 MsG0280008001.01.T01:intron 10.0%
!! AAAATAAAAAAAAAAGTCCA+AGG + Chr2:24158373-24158392 None:intergenic 15.0%
!!! AACAAAAATTGATTTTTCTT+GGG - Chr2:24159137-24159156 MsG0280008001.01.T01:intron 15.0%
!! AAAAAAAGTTAACATTGCAT+TGG - Chr2:24158750-24158769 MsG0280008001.01.T01:intron 20.0%
!! AAAAGAATAGAATGAGAAAA+TGG + Chr2:24156842-24156861 None:intergenic 20.0%
!! AATGTTTCCATTTATGTTAA+GGG - Chr2:24159430-24159449 MsG0280008001.01.T01:intron 20.0%
!! ATATAAGAATCCAATTTGAA+AGG + Chr2:24156462-24156481 None:intergenic 20.0%
!! ATGAAAAAATAGGATGTAAA+TGG + Chr2:24156343-24156362 None:intergenic 20.0%
!! TAATGTTTCCATTTATGTTA+AGG - Chr2:24159429-24159448 MsG0280008001.01.T01:intron 20.0%
!! TAATTATGTTCAACAACTAT+TGG - Chr2:24156402-24156421 MsG0280008001.01.T01:intron 20.0%
!! TACTTTATACTATACAGTAT+TGG - Chr2:24155768-24155787 MsG0280008001.01.T01:CDS 20.0%
!! TTGTTTAAATTGAGAAACTT+GGG - Chr2:24160217-24160236 MsG0280008001.01.T01:CDS 20.0%
!! TTTGTTTAAATTGAGAAACT+TGG - Chr2:24160216-24160235 MsG0280008001.01.T01:CDS 20.0%
!!! AGAAAAATCAATTTTTGTTG+TGG + Chr2:24159136-24159155 None:intergenic 20.0%
!!! CAACAAAAATTGATTTTTCT+TGG - Chr2:24159136-24159155 MsG0280008001.01.T01:intron 20.0%
!!! GAAAAATCAATTTTTGTTGT+GGG + Chr2:24159135-24159154 None:intergenic 20.0%
!!! TTTTCTCTTTTTTTTTTTGC+AGG - Chr2:24157833-24157852 MsG0280008001.01.T01:CDS 20.0%
!!! TTTTTTTTTGTTACCATGTT+TGG - Chr2:24157432-24157451 MsG0280008001.01.T01:intron 20.0%
! AAAAAAAGAGAAAACAGCAA+TGG + Chr2:24157827-24157846 None:intergenic 25.0%
! AAAGAATAGAATGAGAAAAC+GGG + Chr2:24160267-24160286 None:intergenic 25.0%
! AAGTAAGTGTATCAAATCTT+CGG + Chr2:24155753-24155772 None:intergenic 25.0%
! AATAGGATGTAAATGGAATT+TGG + Chr2:24156336-24156355 None:intergenic 25.0%
! AATTAACAACTTCAGCTAAT+TGG + Chr2:24157104-24157123 None:intergenic 25.0%
! ACAATCCAATTCAATTCAAT+AGG + Chr2:24159870-24159889 None:intergenic 25.0%
! ACCAACAAGAAATAGAATAT+GGG + Chr2:24158397-24158416 None:intergenic 25.0%
! AGACTATATTTCCTGATAAT+TGG - Chr2:24155713-24155732 MsG0280008001.01.T01:CDS 25.0%
! AGATTCTCAATCAAGAAAAA+AGG + Chr2:24158986-24159005 None:intergenic 25.0%
! AGCATAATTTCATTGAATGA+TGG + Chr2:24156158-24156177 None:intergenic 25.0%
! AGTTTCCTATTGAATTGAAT+TGG - Chr2:24159862-24159881 MsG0280008001.01.T01:intron 25.0%
! ATGTTTCCATTTATGTTAAG+GGG - Chr2:24159431-24159450 MsG0280008001.01.T01:intron 25.0%
! CTAAAGTAAAAGAATGCTTT+GGG - Chr2:24158683-24158702 MsG0280008001.01.T01:intron 25.0%
! GAAAGAATAGAATGAGAAAA+CGG + Chr2:24160268-24160287 None:intergenic 25.0%
! GCATATATATACATATGAAC+TGG + Chr2:24159677-24159696 None:intergenic 25.0%
! GTTGTTGAACATAATTAAGA+TGG + Chr2:24156399-24156418 None:intergenic 25.0%
! TAGTATTTCATGTAGTGTTT+CGG + Chr2:24155824-24155843 None:intergenic 25.0%
!! ATTCAAGTTTCCTTTCAAAT+TGG - Chr2:24156449-24156468 MsG0280008001.01.T01:intron 25.0%
!! GATTTGGTCAATATGAAAAT+CGG + Chr2:24157701-24157720 None:intergenic 25.0%
!! TTCATTCAAAGAACAACTTT+TGG - Chr2:24156025-24156044 MsG0280008001.01.T01:intron 25.0%
!!! AAAGCATTCTTTTACTTTAG+CGG + Chr2:24158683-24158702 None:intergenic 25.0%
!!! AAATGACACTCATTTTGAAA+TGG - Chr2:24158824-24158843 MsG0280008001.01.T01:CDS 25.0%
!!! AACATGATTTTAGGAACTAT+TGG - Chr2:24159810-24159829 MsG0280008001.01.T01:intron 25.0%
!!! AACTTATGGGACATTTTTTT+AGG - Chr2:24156510-24156529 MsG0280008001.01.T01:intron 25.0%
!!! ATGTACATAGGAGTATTAAT+TGG - Chr2:24158710-24158729 MsG0280008001.01.T01:intron 25.0%
!!! TACATCCTATTTTTTCATTG+TGG - Chr2:24156345-24156364 MsG0280008001.01.T01:intron 25.0%
!!! TTTTTTTTTTGTTGCACTTC+CGG - Chr2:24157541-24157560 MsG0280008001.01.T01:intron 25.0%
AAAAAGAAACCACTGTTTAG+TGG + Chr2:24159480-24159499 None:intergenic 30.0%
AACGAAACAAATAGTTGGTT+TGG + Chr2:24158925-24158944 None:intergenic 30.0%
AATAGAAAATCACACAAGTC+AGG + Chr2:24157216-24157235 None:intergenic 30.0%
AATCTTCGGATCTTTCTATT+CGG + Chr2:24155739-24155758 None:intergenic 30.0%
AATGTATACCATATCTTCCA+GGG - Chr2:24157646-24157665 MsG0280008001.01.T01:intron 30.0%
AATTCACTATGAAAAACTGG+TGG + Chr2:24157912-24157931 None:intergenic 30.0%
ACAAATTGTAATGACCCAAA+GGG + Chr2:24159736-24159755 None:intergenic 30.0%
AGCTGAAGTTGTTAATTCAA+AGG - Chr2:24157107-24157126 MsG0280008001.01.T01:intron 30.0%
AGTATTTCATGTAGTGTTTC+GGG + Chr2:24155823-24155842 None:intergenic 30.0%
ATAGAAAATCACACAAGTCA+GGG + Chr2:24157215-24157234 None:intergenic 30.0%
ATGAAAATCGGAGAAGATAT+GGG + Chr2:24157689-24157708 None:intergenic 30.0%
ATTTCATTGAATGATGGCAT+TGG + Chr2:24156152-24156171 None:intergenic 30.0%
GAACGAAATCAAAAAGAAAC+AGG + Chr2:24156540-24156559 None:intergenic 30.0%
GAAGTTGTTAATTCAAAGGA+TGG - Chr2:24157111-24157130 MsG0280008001.01.T01:intron 30.0%
GACCAACAAGAAATAGAATA+TGG + Chr2:24158398-24158417 None:intergenic 30.0%
GCAAATTCACTATGAAAAAC+TGG + Chr2:24157915-24157934 None:intergenic 30.0%
GCTAAAGTAAAAGAATGCTT+TGG - Chr2:24158682-24158701 MsG0280008001.01.T01:intron 30.0%
GTCAAATGTTGACATTTACA+AGG - Chr2:24158493-24158512 MsG0280008001.01.T01:intron 30.0%
GTTTCCTAGATCATTATGTT+AGG - Chr2:24157565-24157584 MsG0280008001.01.T01:intron 30.0%
TACAAATTGTAATGACCCAA+AGG + Chr2:24159737-24159756 None:intergenic 30.0%
TACATCCTATTTGTTCAATG+TGG - Chr2:24159755-24159774 MsG0280008001.01.T01:intron 30.0%
TATGAAAATCGGAGAAGATA+TGG + Chr2:24157690-24157709 None:intergenic 30.0%
TATTAATTGGAGGGTTCAAT+TGG - Chr2:24158723-24158742 MsG0280008001.01.T01:intron 30.0%
TCACAACGAAATAAGTCAAA+CGG + Chr2:24159903-24159922 None:intergenic 30.0%
TCAGCATTTGGTAAAACAAT+AGG - Chr2:24160411-24160430 MsG0280008001.01.T01:CDS 30.0%
TCTTGCCACAATGAAAAAAT+AGG + Chr2:24156353-24156372 None:intergenic 30.0%
TGACAAAGAGTTATACAATG+AGG + Chr2:24156075-24156094 None:intergenic 30.0%
TTCAAAATGAATGTCGTCAA+AGG - Chr2:24158566-24158585 MsG0280008001.01.T01:intron 30.0%
TTCCTACTATGTTTCATGTT+TGG - Chr2:24157405-24157424 MsG0280008001.01.T01:intron 30.0%
TTCTCAATCAAGAAAAAAGG+TGG + Chr2:24158983-24159002 None:intergenic 30.0%
! AAGCTGTTCAACATGATTTT+AGG - Chr2:24159801-24159820 MsG0280008001.01.T01:intron 30.0%
! AGTTATTTGGAGTACTTGAT+CGG + Chr2:24155890-24155909 None:intergenic 30.0%
! GGAACTGTAACATTTCTTTT+GGG - Chr2:24159029-24159048 MsG0280008001.01.T01:CDS 30.0%
! TCCCATATTCTATTTCTTGT+TGG - Chr2:24158393-24158412 MsG0280008001.01.T01:intron 30.0%
! TGGAACTGTAACATTTCTTT+TGG - Chr2:24159028-24159047 MsG0280008001.01.T01:CDS 30.0%
! TTGTGTGATTTTCTATTCAC+AGG - Chr2:24157219-24157238 MsG0280008001.01.T01:intron 30.0%
!! ACATAGGAGTATTAATTGGA+GGG - Chr2:24158714-24158733 MsG0280008001.01.T01:intron 30.0%
!! TACATAGGAGTATTAATTGG+AGG - Chr2:24158713-24158732 MsG0280008001.01.T01:intron 30.0%
!! TGACGACATTCATTTTGAAA+CGG + Chr2:24158565-24158584 None:intergenic 30.0%
!! TGTTTCCTTCTGAAACTTAT+GGG - Chr2:24156497-24156516 MsG0280008001.01.T01:intron 30.0%
!! TTCATAGTGAATTTGCTGAT+TGG - Chr2:24157919-24157938 MsG0280008001.01.T01:intron 30.0%
!! TTGATAGCGTATTTGTTGAT+TGG - Chr2:24160370-24160389 MsG0280008001.01.T01:CDS 30.0%
!! TTGTTTCCTTCTGAAACTTA+TGG - Chr2:24156496-24156515 MsG0280008001.01.T01:intron 30.0%
!!! ACAGGTTTCTCTTTTAACTT+TGG - Chr2:24156796-24156815 MsG0280008001.01.T01:intron 30.0%
!!! AGTCTTAACCGTGTTTTAAT+CGG - Chr2:24159201-24159220 MsG0280008001.01.T01:intron 30.0%
!!! CTGAGTTTTAAGGAGATTAT+AGG - Chr2:24160309-24160328 MsG0280008001.01.T01:CDS 30.0%
AAAACTGAACCTGAGTTTCT+GGG - Chr2:24156873-24156892 MsG0280008001.01.T01:intron 35.0%
AAAAGTAGTGACTCTACAGA+GGG + Chr2:24160483-24160502 None:intergenic 35.0%
AAAGGCTACAATTATCTCAG+AGG - Chr2:24156663-24156682 MsG0280008001.01.T01:intron 35.0%
AAATGGAGCATACAAGTCAA+TGG + Chr2:24158200-24158219 None:intergenic 35.0%
AAGATTTCCTGTTATGCATC+GGG - Chr2:24157287-24157306 MsG0280008001.01.T01:intron 35.0%
AATACGCTATCAAAAACACG+TGG + Chr2:24160363-24160382 None:intergenic 35.0%
AATGTCCCATAAGTTTCAGA+AGG + Chr2:24156505-24156524 None:intergenic 35.0%
AATTGAAAGCAAACTTAGCC+AGG + Chr2:24157155-24157174 None:intergenic 35.0%
ACAATTATCTCAGAGGACAA+GGG - Chr2:24156670-24156689 MsG0280008001.01.T01:intron 35.0%
ACAGGGTAAAGAAAATGTAG+TGG + Chr2:24159163-24159182 None:intergenic 35.0%
AGAAGCAACACAACATGATT+TGG + Chr2:24156766-24156785 None:intergenic 35.0%
AGCCAAACATGAAACATAGT+AGG + Chr2:24157410-24157429 None:intergenic 35.0%
AGGTTCATTAAGTGGGAATA+GGG + Chr2:24159109-24159128 None:intergenic 35.0%
AGTACCTCAGATGATGATAA+TGG + Chr2:24157348-24157367 None:intergenic 35.0%
AGTTTCTATCCTATTCCCTT+TGG + Chr2:24159240-24159259 None:intergenic 35.0%
ATAACAGGAAATCTTGGGAA+AGG + Chr2:24157282-24157301 None:intergenic 35.0%
ATACGCTATCAAAAACACGT+GGG + Chr2:24160362-24160381 None:intergenic 35.0%
ATCTCCTTAAAACTCAGACT+CGG + Chr2:24160306-24160325 None:intergenic 35.0%
CAAACAGTACTATTACCTCA+CGG + Chr2:24156220-24156239 None:intergenic 35.0%
CAAGATTTCCTGTTATGCAT+CGG - Chr2:24157286-24157305 MsG0280008001.01.T01:intron 35.0%
CAATATGACGATTGAAGAAG+AGG + Chr2:24156742-24156761 None:intergenic 35.0%
CAATGATGTGGTCAATATGA+CGG + Chr2:24160167-24160186 None:intergenic 35.0%
CAATTGAAAGTGACTTAGCT+AGG + Chr2:24158141-24158160 None:intergenic 35.0%
CAGATAAGGGAGAATGTATA+CGG - Chr2:24160096-24160115 MsG0280008001.01.T01:intron 35.0%
CATAATGATCTAGGAAACAC+CGG + Chr2:24157563-24157582 None:intergenic 35.0%
CCATAATAACATAGACTGCT+GGG + Chr2:24159642-24159661 None:intergenic 35.0%
CGATCAACGAAACAAATAGT+TGG + Chr2:24158930-24158949 None:intergenic 35.0%
CTACATTTCGTTGTGAAGTT+GGG + Chr2:24155615-24155634 None:intergenic 35.0%
CTATAATCCCTGGAAAAGTT+AGG + Chr2:24157860-24157879 None:intergenic 35.0%
CTATTACCTCACGGAAAAAT+AGG + Chr2:24156211-24156230 None:intergenic 35.0%
CTTGAAATCATACGCATCAT+GGG - Chr2:24155642-24155661 MsG0280008001.01.T01:CDS 35.0%
CTTGCGCTGTAATATTTACA+CGG - Chr2:24157459-24157478 MsG0280008001.01.T01:intron 35.0%
CTTGGGAAAGGTAATATTTC+AGG + Chr2:24158253-24158272 None:intergenic 35.0%
GAATGTATACCATATCTTCC+AGG - Chr2:24157645-24157664 MsG0280008001.01.T01:intron 35.0%
GAATTCATTAACAAAGCCGA+TGG - Chr2:24158101-24158120 MsG0280008001.01.T01:CDS 35.0%
GATGCATAACAGGAAATCTT+GGG + Chr2:24157287-24157306 None:intergenic 35.0%
GCAATTCCCCTTAACATAAA+TGG + Chr2:24159440-24159459 None:intergenic 35.0%
GCATAGCTTAGAATGACATA+GGG + Chr2:24159987-24160006 None:intergenic 35.0%
GGAAGCAACACAAAATGATT+TGG + Chr2:24157717-24157736 None:intergenic 35.0%
GGAATGCTTAAAGTGACTTA+GGG + Chr2:24156574-24156593 None:intergenic 35.0%
GTCTCCTAGATCATTATGTT+GGG - Chr2:24160027-24160046 MsG0280008001.01.T01:intron 35.0%
GTTTCTCAGATCAGTATGTT+GGG - Chr2:24156614-24156633 MsG0280008001.01.T01:intron 35.0%
TAATGACCCAAAGGGAATAA+GGG + Chr2:24159728-24159747 None:intergenic 35.0%
TACAATTATCTCAGAGGACA+AGG - Chr2:24156669-24156688 MsG0280008001.01.T01:intron 35.0%
TAGAAAATCACACAAGTCAG+GGG + Chr2:24157214-24157233 None:intergenic 35.0%
TATTTCGTTGTGAGACTTGT+GGG - Chr2:24159910-24159929 MsG0280008001.01.T01:intron 35.0%
TCAGAAGGAAACAAGCAAAA+TGG + Chr2:24156490-24156509 None:intergenic 35.0%
TCCATAATAACATAGACTGC+TGG + Chr2:24159643-24159662 None:intergenic 35.0%
TCTACATTTCGTTGTGAAGT+TGG + Chr2:24155616-24155635 None:intergenic 35.0%
TCTCCAATACATAATCAGCA+GGG + Chr2:24155942-24155961 None:intergenic 35.0%
TCTTGAAATCATACGCATCA+TGG - Chr2:24155641-24155660 MsG0280008001.01.T01:CDS 35.0%
TCTTGCCACATTGAACAAAT+AGG + Chr2:24159763-24159782 None:intergenic 35.0%
TCTTTACCCTGTAGAAATGA+AGG - Chr2:24159171-24159190 MsG0280008001.01.T01:intron 35.0%
TGAAAATCGGAGAAGATATG+GGG + Chr2:24157688-24157707 None:intergenic 35.0%
TGCATAGCTTAGAATGACAT+AGG + Chr2:24159988-24160007 None:intergenic 35.0%
TGCTCCTAACATAATGATCT+AGG + Chr2:24157572-24157591 None:intergenic 35.0%
TGGAATGCTTAAAGTGACTT+AGG + Chr2:24156575-24156594 None:intergenic 35.0%
TGTCTCCTAGATCATTATGT+TGG - Chr2:24160026-24160045 MsG0280008001.01.T01:intron 35.0%
TGTTGGTCAAAACATTCAAC+TGG - Chr2:24158410-24158429 MsG0280008001.01.T01:intron 35.0%
TGTTTCATATGTGCCTCAAT+GGG + Chr2:24159392-24159411 None:intergenic 35.0%
TGTTTCTCAGATCAGTATGT+TGG - Chr2:24156613-24156632 MsG0280008001.01.T01:intron 35.0%
TTAGGAGCAGTCAGAATAAA+TGG - Chr2:24157583-24157602 MsG0280008001.01.T01:intron 35.0%
TTATTTCGTTGTGAGACTTG+TGG - Chr2:24159909-24159928 MsG0280008001.01.T01:intron 35.0%
TTGAAATCATACGCATCATG+GGG - Chr2:24155643-24155662 MsG0280008001.01.T01:CDS 35.0%
TTGTTTCATATGTGCCTCAA+TGG + Chr2:24159393-24159412 None:intergenic 35.0%
TTTCTATTCGGCCAATTATC+AGG + Chr2:24155727-24155746 None:intergenic 35.0%
! AAAACCGAGTCTGAGTTTTA+AGG - Chr2:24160299-24160318 MsG0280008001.01.T01:CDS 35.0%
! ACATTCAACTGGCATTTTCT+TGG - Chr2:24158421-24158440 MsG0280008001.01.T01:intron 35.0%
! CACAAGAAGTGCAAACAATA+TGG + Chr2:24156595-24156614 None:intergenic 35.0%
! CATTCAACTGGCATTTTCTT+GGG - Chr2:24158422-24158441 MsG0280008001.01.T01:intron 35.0%
! CGTATTTGTTGATTGGTCAT+TGG - Chr2:24160377-24160396 MsG0280008001.01.T01:CDS 35.0%
! TGTATTTGTTGATTGCCCAT+TGG - Chr2:24156951-24156970 MsG0280008001.01.T01:intron 35.0%
! TTTTCTTCCACAGACATAAC+AGG + Chr2:24158280-24158299 None:intergenic 35.0%
!! CATGTTGTGTTGCTTCTATA+TGG - Chr2:24156769-24156788 MsG0280008001.01.T01:intron 35.0%
!! GAGGTACTAAGTTTCTAGTA+TGG - Chr2:24158343-24158362 MsG0280008001.01.T01:intron 35.0%
!!! CTTGGGAAAGGTACTATTTT+TGG + Chr2:24157270-24157289 None:intergenic 35.0%
!!! GACATTCATTTTGAAACGGA+GGG + Chr2:24158561-24158580 None:intergenic 35.0%
!!! TGACACTCATTTTGAAATGG+AGG - Chr2:24158827-24158846 MsG0280008001.01.T01:CDS 35.0%
ACACAAGACATTGAGCTAGA+TGG + Chr2:24157245-24157264 None:intergenic 40.0%
ACATATTCGCTCCATCTGTA+TGG - Chr2:24157031-24157050 MsG0280008001.01.T01:intron 40.0%
ACATTCGGCCGATTAAAACA+CGG + Chr2:24159212-24159231 None:intergenic 40.0%
ACCTGGTAAGACATTGATGT+GGG - Chr2:24155585-24155604 MsG0280008001.01.T01:CDS 40.0%
AGAAGCAACACACAATGATG+TGG + Chr2:24160179-24160198 None:intergenic 40.0%
AGACGCGTAAATTTCTTGTG+GGG + Chr2:24157323-24157342 None:intergenic 40.0%
AGAGACGCGTAAATTTCTTG+TGG + Chr2:24157325-24157344 None:intergenic 40.0%
AGCAGTCAGAATAAATGGCA+TGG - Chr2:24157588-24157607 MsG0280008001.01.T01:intron 40.0%
AGGGTTATCTCAGCAGATAA+GGG - Chr2:24160083-24160102 MsG0280008001.01.T01:intron 40.0%
AGTACCTCAGATGATCCTAT+TGG + Chr2:24158331-24158350 None:intergenic 40.0%
ATAATTCCAACACGCTTCTG+TGG + Chr2:24156997-24157016 None:intergenic 40.0%
ATATGGGAAAACAAAGGGAC+TGG - Chr2:24157965-24157984 MsG0280008001.01.T01:intron 40.0%
ATGTAGAGTCCAAAGGGAAT+AGG - Chr2:24159228-24159247 MsG0280008001.01.T01:intron 40.0%
ATTTCGTTGTGAGACTTGTG+GGG - Chr2:24159911-24159930 MsG0280008001.01.T01:intron 40.0%
CAAAACTGAACCTGAGTTTC+TGG - Chr2:24156872-24156891 MsG0280008001.01.T01:intron 40.0%
CAAAAGTAGTGACTCTACAG+AGG + Chr2:24160484-24160503 None:intergenic 40.0%
CAATGAAATTATGCTCGACC+TGG - Chr2:24156163-24156182 MsG0280008001.01.T01:intron 40.0%
CACATGCAAGCAAACATCTA+TGG + Chr2:24155861-24155880 None:intergenic 40.0%
CAGTGTTATATGATGCTAGC+TGG - Chr2:24159008-24159027 MsG0280008001.01.T01:CDS 40.0%
CCCAGCAGTCTATGTTATTA+TGG - Chr2:24159639-24159658 MsG0280008001.01.T01:intron 40.0%
CCGTCATATGGGAAAACAAA+GGG - Chr2:24157960-24157979 MsG0280008001.01.T01:intron 40.0%
CGATGCATAACAGGAAATCT+TGG + Chr2:24157288-24157307 None:intergenic 40.0%
CGGTTAGTGAATCATGTACT+CGG + Chr2:24159303-24159322 None:intergenic 40.0%
CTCTCCAATACATAATCAGC+AGG + Chr2:24155943-24155962 None:intergenic 40.0%
CTCTCCATTATCATCATCTG+AGG - Chr2:24157341-24157360 MsG0280008001.01.T01:intron 40.0%
CTGCACTATATTATGTGCTC+TGG + Chr2:24155695-24155714 None:intergenic 40.0%
CTGCTAGTAGGAAATTGTAG+CGG + Chr2:24159356-24159375 None:intergenic 40.0%
GACTTGTATGCTCCATTTAC+AGG - Chr2:24158202-24158221 MsG0280008001.01.T01:CDS 40.0%
GAGACGCGTAAATTTCTTGT+GGG + Chr2:24157324-24157343 None:intergenic 40.0%
GAGGTTCATTAAGTGGGAAT+AGG + Chr2:24159110-24159129 None:intergenic 40.0%
GATTATGTATTGGAGAGCTC+TGG - Chr2:24155946-24155965 MsG0280008001.01.T01:intron 40.0%
GCAAAGCCTTCATTTCTACA+GGG + Chr2:24159180-24159199 None:intergenic 40.0%
GGAATAGGATAGAAACTAGC+TGG - Chr2:24159243-24159262 MsG0280008001.01.T01:intron 40.0%
GGCAGATAAACAAGTACCAT+CGG + Chr2:24158120-24158139 None:intergenic 40.0%
GGGAAAGGTAATATTTCAGG+AGG + Chr2:24158250-24158269 None:intergenic 40.0%
GTAATGACCCAAAGGGAATA+AGG + Chr2:24159729-24159748 None:intergenic 40.0%
TAGGGTTATCTCAGCAGATA+AGG - Chr2:24160082-24160101 MsG0280008001.01.T01:intron 40.0%
TATGCATGTGTCTCTCCAAT+AGG - Chr2:24158313-24158332 MsG0280008001.01.T01:intron 40.0%
TCTGTTATAGGTCTGCTAGT+AGG + Chr2:24159368-24159387 None:intergenic 40.0%
TGCAAAGCCTTCATTTCTAC+AGG + Chr2:24159181-24159200 None:intergenic 40.0%
TGCACCCAACATAATGATCT+AGG + Chr2:24160034-24160053 None:intergenic 40.0%
TGCTAGTAGGAAATTGTAGC+GGG + Chr2:24159355-24159374 None:intergenic 40.0%
TGCTTCTTACCACTAAACAG+TGG - Chr2:24159468-24159487 MsG0280008001.01.T01:intron 40.0%
TGGTACTAGAGAAGAAGTGA+AGG - Chr2:24159263-24159282 MsG0280008001.01.T01:intron 40.0%
TTAGGATTCCCTGGAAGATA+TGG + Chr2:24157657-24157676 None:intergenic 40.0%
TTCCCTTTGGACTCTACATT+CGG + Chr2:24159227-24159246 None:intergenic 40.0%
TTGCAACTCCTGTTCTACAA+GGG + Chr2:24156254-24156273 None:intergenic 40.0%
! AACTGGCATTTTCTTGGGAA+AGG - Chr2:24158427-24158446 MsG0280008001.01.T01:intron 40.0%
! ACGGTTGATTTCCTCTGAAA+GGG + Chr2:24156111-24156130 None:intergenic 40.0%
! ACTGATTCTGCAACTTCTGT+GGG - Chr2:24159053-24159072 MsG0280008001.01.T01:CDS 40.0%
! AGAGAGATGTCTGATGATGT+AGG + Chr2:24160137-24160156 None:intergenic 40.0%
! CTCTGTAGAGTCACTACTTT+TGG - Chr2:24160482-24160501 MsG0280008001.01.T01:CDS 40.0%
! GAGGTACTAAGTTTCATGTC+TGG - Chr2:24157360-24157379 MsG0280008001.01.T01:intron 40.0%
! GTTCCCTGCTGATTATGTAT+TGG - Chr2:24155936-24155955 MsG0280008001.01.T01:intron 40.0%
! TACTTACCTCTTTGTTTGCC+TGG - Chr2:24157134-24157153 MsG0280008001.01.T01:intron 40.0%
! TCTGATGATGTAGGATTCTC+TGG + Chr2:24160128-24160147 None:intergenic 40.0%
! TTAGCCTTCGCTAATGTCAT+CGG + Chr2:24159610-24159629 None:intergenic 40.0%
! TTGATTTCCTCTGAAAGGGA+CGG + Chr2:24156107-24156126 None:intergenic 40.0%
!! AGAACAACTTTTGGAGAGCA+TGG - Chr2:24156034-24156053 MsG0280008001.01.T01:intron 40.0%
!! CATACAAGTCAATGGATTGC+AGG + Chr2:24158192-24158211 None:intergenic 40.0%
!! CTGAATGCAGTGCTTTAAGA+TGG - Chr2:24159584-24159603 MsG0280008001.01.T01:intron 40.0%
!! GCTTTGGGAGTAATGTACAT+AGG - Chr2:24158698-24158717 MsG0280008001.01.T01:intron 40.0%
!! GTTGTGTTGCTTCTATATGG+TGG - Chr2:24156772-24156791 MsG0280008001.01.T01:intron 40.0%
!! GTTTCTAGTATGGCTTTCCT+TGG - Chr2:24158353-24158372 MsG0280008001.01.T01:intron 40.0%
!! TCAATTTTTGTTGTGGGCTG+AGG + Chr2:24159129-24159148 None:intergenic 40.0%
!! TGAATTTGCTGATTGGCCAT+TGG - Chr2:24157926-24157945 MsG0280008001.01.T01:intron 40.0%
!!! CCCTTTGTTTTCCCATATGA+CGG + Chr2:24157963-24157982 None:intergenic 40.0%
!!! CCTTTGTTTTCCCATATGAC+GGG + Chr2:24157962-24157981 None:intergenic 40.0%
!!! CGACATTCATTTTGAAACGG+AGG + Chr2:24158562-24158581 None:intergenic 40.0%
!!! GAGTCACTACTTTTGGAACT+TGG - Chr2:24160489-24160508 MsG0280008001.01.T01:CDS 40.0%
AAGCCTTCCTGTTATGTCTG+TGG - Chr2:24158270-24158289 MsG0280008001.01.T01:intron 45.0%
ACAGACATAACAGGAAGGCT+TGG + Chr2:24158271-24158290 None:intergenic 45.0%
ACCTATAACAGAGCCCATTG+AGG - Chr2:24159376-24159395 MsG0280008001.01.T01:intron 45.0%
ACTGGCATAGCAATGGAAGT+CGG + Chr2:24157184-24157203 None:intergenic 45.0%
ACTTAGCCAGGCAAACAAAG+AGG + Chr2:24157143-24157162 None:intergenic 45.0%
AGAGACACATGCATAGTGTG+CGG + Chr2:24158308-24158327 None:intergenic 45.0%
AGATATGGGGTCGTAGAGTT+AGG + Chr2:24157675-24157694 None:intergenic 45.0%
ATAACAGGAAGGCTTGGGAA+AGG + Chr2:24158265-24158284 None:intergenic 45.0%
ATTATCTCAGAGGACAAGGG+AGG - Chr2:24156673-24156692 MsG0280008001.01.T01:intron 45.0%
CACCTGGTAAGACATTGATG+TGG - Chr2:24155584-24155603 MsG0280008001.01.T01:CDS 45.0%
CAGACATAACAGGAAGGCTT+GGG + Chr2:24158270-24158289 None:intergenic 45.0%
CATCATTATGGCCTGCCAAT+GGG + Chr2:24156969-24156988 None:intergenic 45.0%
CCCGTCATATGGGAAAACAA+AGG - Chr2:24157959-24157978 MsG0280008001.01.T01:intron 45.0%
CTACAACTATCTCAGCAGAC+AGG - Chr2:24157619-24157638 MsG0280008001.01.T01:intron 45.0%
CTATAGCTGGCTATAATCCC+TGG + Chr2:24157870-24157889 None:intergenic 45.0%
CTCTCCAATAGGATCATCTG+AGG - Chr2:24158324-24158343 MsG0280008001.01.T01:intron 45.0%
CTTCCACAGACATAACAGGA+AGG + Chr2:24158276-24158295 None:intergenic 45.0%
CTTGCAACTCCTGTTCTACA+AGG + Chr2:24156255-24156274 None:intergenic 45.0%
CTTGCATAGCAATGGAAGTC+AGG + Chr2:24158168-24158187 None:intergenic 45.0%
GAATAAGCGGCATGGTTGAA+AGG - Chr2:24156645-24156664 MsG0280008001.01.T01:intron 45.0%
GAGAAACCTTTGCAACTGCA+CGG + Chr2:24157738-24157757 None:intergenic 45.0%
GCAGCTATAAGAAGCAACCA+CGG - Chr2:24160331-24160350 MsG0280008001.01.T01:CDS 45.0%
GGTAATATTTCAGGAGGCTC+AGG + Chr2:24158244-24158263 None:intergenic 45.0%
GTACAATCTCCCAGAAACTC+AGG + Chr2:24156885-24156904 None:intergenic 45.0%
GTTGAGCAAACAGTCCAAGA+CGG + Chr2:24156130-24156149 None:intergenic 45.0%
TACCAACTCCCTTGTAGAAC+AGG - Chr2:24156243-24156262 MsG0280008001.01.T01:intron 45.0%
TCAGAGGAAATCAACCGTCT+TGG - Chr2:24156113-24156132 MsG0280008001.01.T01:intron 45.0%
TCAGATCAGTATGTTGGGAG+CGG - Chr2:24156619-24156638 MsG0280008001.01.T01:intron 45.0%
TCATCATTATGGCCTGCCAA+TGG + Chr2:24156970-24156989 None:intergenic 45.0%
TCCCACATCAATGTCTTACC+AGG + Chr2:24155589-24155608 None:intergenic 45.0%
TCTGTGGCCCATCATCATTA+TGG + Chr2:24156981-24157000 None:intergenic 45.0%
TGAAATTATGCTCGACCTGG+AGG - Chr2:24156166-24156185 MsG0280008001.01.T01:intron 45.0%
TGAGAAGTCGACTGAACTTG+TGG + Chr2:24156004-24156023 None:intergenic 45.0%
TGAGCTAGATGGCCTGTAAA+TGG + Chr2:24158217-24158236 None:intergenic 45.0%
TGCAGTCAGAATTAGGAGCA+TGG - Chr2:24160050-24160069 MsG0280008001.01.T01:intron 45.0%
TGGCAGGCCATAATGATGAT+GGG - Chr2:24156971-24156990 MsG0280008001.01.T01:intron 45.0%
TGGGCTGAGGTTCATTAAGT+GGG + Chr2:24159116-24159135 None:intergenic 45.0%
TGTTGGGTGCAGTCAGAATT+AGG - Chr2:24160043-24160062 MsG0280008001.01.T01:intron 45.0%
TTGCAGAACTGGCATAGCAA+TGG + Chr2:24157191-24157210 None:intergenic 45.0%
TTGCAGGACTTGCATAGCAA+TGG + Chr2:24158176-24158195 None:intergenic 45.0%
TTGCTTCTATATGGTGGCAC+AGG - Chr2:24156778-24156797 MsG0280008001.01.T01:intron 45.0%
TTGCTTCTATGCAGTCGCAA+AGG - Chr2:24160191-24160210 MsG0280008001.01.T01:CDS 45.0%
TTGGCAGGCCATAATGATGA+TGG - Chr2:24156970-24156989 MsG0280008001.01.T01:intron 45.0%
! AAAACTGGTGGTGTGTACTG+TGG + Chr2:24157900-24157919 None:intergenic 45.0%
! CGTTTTTCCCGATGCATAAC+AGG + Chr2:24157297-24157316 None:intergenic 45.0%
! GACGGTTGATTTCCTCTGAA+AGG + Chr2:24156112-24156131 None:intergenic 45.0%
! GAGAGCATGGCATGGAAAAA+GGG - Chr2:24156047-24156066 MsG0280008001.01.T01:intron 45.0%
! GCAGTCAGAATTAGGAGCAT+GGG - Chr2:24160051-24160070 MsG0280008001.01.T01:intron 45.0%
! TGATTGGTCATTGGCATGCA+AGG - Chr2:24160386-24160405 MsG0280008001.01.T01:CDS 45.0%
! TGCAGGACCTAACTTTTCCA+GGG - Chr2:24157850-24157869 MsG0280008001.01.T01:CDS 45.0%
! TTGCAGGACCTAACTTTTCC+AGG - Chr2:24157849-24157868 MsG0280008001.01.T01:CDS 45.0%
! TTTGTTGATTGCCCATTGGC+AGG - Chr2:24156955-24156974 MsG0280008001.01.T01:intron 45.0%
!! AACTTTTGGAGAGCATGGCA+TGG - Chr2:24156039-24156058 MsG0280008001.01.T01:intron 45.0%
!! AATTGTAGCGGGTTGACTAG+AGG + Chr2:24159344-24159363 None:intergenic 45.0%
!! ATTGTAGCGGGTTGACTAGA+GGG + Chr2:24159343-24159362 None:intergenic 45.0%
!! CACTGATTCTGCAACTTCTG+TGG - Chr2:24159052-24159071 MsG0280008001.01.T01:CDS 45.0%
!! GATCGACCTATTTTTCCGTG+AGG - Chr2:24156202-24156221 MsG0280008001.01.T01:intron 45.0%
!! GCTATTTTGTAACTCCTCGC+AGG + Chr2:24158080-24158099 None:intergenic 45.0%
!!! TTTTCCCATATGACGGGTCT+AGG + Chr2:24157956-24157975 None:intergenic 45.0%
!!! TTTTGGAACTTGGCGCTGAA+GGG - Chr2:24160499-24160518 MsG0280008001.01.T01:CDS 45.0%
AAAACGAGTGACCTGCACTC+TGG + Chr2:24156925-24156944 None:intergenic 50.0%
ACAAACAGCAACCAGAGTGC+AGG - Chr2:24156911-24156930 MsG0280008001.01.T01:intron 50.0%
ATCACCAGTGGCCATACAGA+TGG + Chr2:24157045-24157064 None:intergenic 50.0%
ATCTGTATGGCCACTGGTGA+TGG - Chr2:24157044-24157063 MsG0280008001.01.T01:intron 50.0%
ATGGCCGATGACATTAGCGA+AGG - Chr2:24159603-24159622 MsG0280008001.01.T01:intron 50.0%
CAGCGCAAGAAAGCCAAACA+TGG + Chr2:24157448-24157467 None:intergenic 50.0%
CATCTTTGTCACAGTGCTGC+TGG + Chr2:24155917-24155936 None:intergenic 50.0%
CATGCCTAGACCCGTCATAT+GGG - Chr2:24157949-24157968 MsG0280008001.01.T01:intron 50.0%
CTATGTAAAGCCGCTGCTGT+CGG - Chr2:24158034-24158053 MsG0280008001.01.T01:CDS 50.0%
CTCCTGTTCTACAAGGGAGT+TGG + Chr2:24156248-24156267 None:intergenic 50.0%
CTGGCATAGCAATGGAAGTC+GGG + Chr2:24157183-24157202 None:intergenic 50.0%
CTGTGGTTGCAGTCTATAGC+TGG + Chr2:24157883-24157902 None:intergenic 50.0%
GACAGCAGCGGCTTTACATA+GGG + Chr2:24158035-24158054 None:intergenic 50.0%
GACTAGAGGGAGGGAAATAG+AGG + Chr2:24159330-24159349 None:intergenic 50.0%
GCATGCAAGGACTCAGCATT+TGG - Chr2:24160399-24160418 MsG0280008001.01.T01:CDS 50.0%
GCTCAGGACATTGAGCTAGA+TGG + Chr2:24158228-24158247 None:intergenic 50.0%
GGAGCATGGGTGAAATGCTA+GGG - Chr2:24160064-24160083 MsG0280008001.01.T01:intron 50.0%
GGCCGAATGTAGAGTCCAAA+GGG - Chr2:24159222-24159241 MsG0280008001.01.T01:intron 50.0%
GTCGACTGAACTTGTGGTGA+TGG + Chr2:24155998-24156017 None:intergenic 50.0%
GTCGTAGAGTTAGGATTCCC+TGG + Chr2:24157666-24157685 None:intergenic 50.0%
GTGACAAGTTCCATCACCAG+TGG + Chr2:24157057-24157076 None:intergenic 50.0%
GTGTAAAGTTCCGACAGCAG+CGG + Chr2:24158047-24158066 None:intergenic 50.0%
TCATAGTTTCTGCTGCCTCC+AGG + Chr2:24156184-24156203 None:intergenic 50.0%
TCCAGCGAATCCTAAACGAG+CGG - Chr2:24156711-24156730 MsG0280008001.01.T01:intron 50.0%
TGCCTGCCCTTATTCCCTTT+GGG - Chr2:24159719-24159738 MsG0280008001.01.T01:intron 50.0%
TGCTGCTGGTGCGAGTTATT+TGG + Chr2:24155903-24155922 None:intergenic 50.0%
TGTTTCGGGCTCCTTCTTCT+TGG + Chr2:24155809-24155828 None:intergenic 50.0%
TTGCCTGCCCTTATTCCCTT+TGG - Chr2:24159718-24159737 MsG0280008001.01.T01:intron 50.0%
TTGCTTCCGTGCAGTTGCAA+AGG - Chr2:24157729-24157748 MsG0280008001.01.T01:intron 50.0%
TTGGGAGCGGTCAGAATAAG+CGG - Chr2:24156632-24156651 MsG0280008001.01.T01:intron 50.0%
! AGGAGCATGGGTGAAATGCT+AGG - Chr2:24160063-24160082 MsG0280008001.01.T01:intron 50.0%
! GCCTCAATGGGCTCTGTTAT+AGG + Chr2:24159380-24159399 None:intergenic 50.0%
! GGAGAGCATGGCATGGAAAA+AGG - Chr2:24156046-24156065 MsG0280008001.01.T01:intron 50.0%
! GTGGGCTGAGGTTCATTAAG+TGG + Chr2:24159117-24159136 None:intergenic 50.0%
! TTTGGAACTTGGCGCTGAAG+GGG - Chr2:24160500-24160519 MsG0280008001.01.T01:CDS 50.0%
!! GGGAGGGAAATAGAGGCATT+CGG + Chr2:24159323-24159342 None:intergenic 50.0%
!!! CTTTTGGAACTTGGCGCTGA+AGG - Chr2:24160498-24160517 MsG0280008001.01.T01:CDS 50.0%
ACACTGTTGTGACACCTGCG+AGG - Chr2:24158063-24158082 MsG0280008001.01.T01:CDS 55.0%
AGCGGTCAGAATAAGCGGCA+TGG - Chr2:24156637-24156656 MsG0280008001.01.T01:intron 55.0%
ATCATACGCATCATGGGGCG+AGG - Chr2:24155648-24155667 MsG0280008001.01.T01:CDS 55.0%
CAAGTCAGGGGTTGCAGAAC+TGG + Chr2:24157202-24157221 None:intergenic 55.0%
CGACAGCAGCGGCTTTACAT+AGG + Chr2:24158036-24158055 None:intergenic 55.0%
CGGCCGAATGTAGAGTCCAA+AGG - Chr2:24159221-24159240 MsG0280008001.01.T01:intron 55.0%
GACCCAAAGGGAATAAGGGC+AGG + Chr2:24159724-24159743 None:intergenic 55.0%
GCATGCCTAGACCCGTCATA+TGG - Chr2:24157948-24157967 MsG0280008001.01.T01:intron 55.0%
TGCTAGACCGTCCCTTTCAG+AGG - Chr2:24156097-24156116 MsG0280008001.01.T01:intron 55.0%
TGTGTGCCGAGCCAAGAAGA+AGG - Chr2:24155795-24155814 MsG0280008001.01.T01:CDS 55.0%
! AAAACACGTGGGTTGCACCG+TGG + Chr2:24160351-24160370 None:intergenic 55.0%
! AGAGGTGTGTCCGCTCGTTT+AGG + Chr2:24156724-24156743 None:intergenic 55.0%
! TCCGCTCGTTTAGGATTCGC+TGG + Chr2:24156715-24156734 None:intergenic 55.0%
!! TAGCGGGTTGACTAGAGGGA+GGG + Chr2:24159339-24159358 None:intergenic 55.0%
!!! GACTTGTGGGGCTGCTTTTC+TGG - Chr2:24159923-24159942 MsG0280008001.01.T01:intron 55.0%
CGCTCCATCTGTATGGCCAC+TGG - Chr2:24157038-24157057 MsG0280008001.01.T01:intron 60.0%
CGGGCTCCTTCTTCTTGGCT+CGG + Chr2:24155804-24155823 None:intergenic 60.0%
GACGGGTCTAGGCATGCCAA+TGG + Chr2:24157945-24157964 None:intergenic 60.0%
! GATGGGCCACAGAAGCGTGT+TGG - Chr2:24156988-24157007 MsG0280008001.01.T01:intron 60.0%
!! GTAGCGGGTTGACTAGAGGG+AGG + Chr2:24159340-24159359 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 24155580 24160542 24155580 ID=MsG0280008001.01;Name=MsG0280008001.01
Chr2 mRNA 24155580 24160542 24155580 ID=MsG0280008001.01.T01;Parent=MsG0280008001.01;Name=MsG0280008001.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|0.8|1|1|5|0|477
Chr2 exon 24160134 24160542 24160134 ID=MsG0280008001.01.T01:exon:34712;Parent=MsG0280008001.01.T01
Chr2 exon 24158760 24159145 24158760 ID=MsG0280008001.01.T01:exon:34711;Parent=MsG0280008001.01.T01
Chr2 exon 24158000 24158267 24158000 ID=MsG0280008001.01.T01:exon:34710;Parent=MsG0280008001.01.T01
Chr2 exon 24157777 24157898 24157777 ID=MsG0280008001.01.T01:exon:34709;Parent=MsG0280008001.01.T01
Chr2 exon 24155580 24155828 24155580 ID=MsG0280008001.01.T01:exon:34708;Parent=MsG0280008001.01.T01
Chr2 CDS 24160134 24160542 24160134 ID=MsG0280008001.01.T01:cds;Parent=MsG0280008001.01.T01
Chr2 CDS 24158760 24159145 24158760 ID=MsG0280008001.01.T01:cds;Parent=MsG0280008001.01.T01
Chr2 CDS 24158000 24158267 24158000 ID=MsG0280008001.01.T01:cds;Parent=MsG0280008001.01.T01
Chr2 CDS 24157777 24157898 24157777 ID=MsG0280008001.01.T01:cds;Parent=MsG0280008001.01.T01
Chr2 CDS 24155580 24155828 24155580 ID=MsG0280008001.01.T01:cds;Parent=MsG0280008001.01.T01
Gene Sequence

>MsG0280008001.01.T01

ATGGCACCTGGTAAGACATTGATGTGGGAAATCCCAACTTCACAACGAAATGTAGATTACTTCTTGAAATCATACGCATCATGGGGCGAGGATGTTACAGATGTTTTGAGTTCCAGAGCACATAATATAGTGCAGACTATATTTCCTGATAATTGGCCGAATAGAAAGATCCGAAGATTTGATACACTTACTTTATACTATACAGTATTGGAACGTGTGTGCCGAGCCAAGAAGAAGGAGCCCGAAACACTACATGAAATACTAACTTCTGATATCTTCCATAGATGTTTGCTTGCATGTGCTGCTGCCGATCAAGTACTCCAAATAACTCGCACCAGCAGCACTGTGACAAAGATGTTCCCTGCTGATTATGTATTGGAGAGCTCTGGAATTACAGCTTTTGATCTTAGCCATAATGATGATGGGCCACAGAAGCGTGTTGGAATTATTACATTTTACAATGACATATTCGCTCCATCTGTATGGCCACTGGTGATGGAACTTGTCACTGATGAAGAAACTGTGAAAAGTGACCAATTAGCTGAAGTTGTTAATTCAAAGGATGGTACTTACCTCTTTGTTTGCCTGGCTAAGTTTGCTTTCAATTGTTTGCCCGACTTCCATTGCTATGCCAGTTCTGCAACCCCTGACTTGTGTGATTTTCTATTCACAGGCCATCTAGCTCAATGTCTTGTGTCTCCAAAAATAGTACCTTTCCCAAGATTTCCTGTTATGCATCGGGAAAAACGATACCCCACAAGAAATTTACGCGTCTCTCCATTATCATCATCTGAGGACCTAACTTTTCCAGGGATTATAGCCAGCTATAGACTGCAACCACAGTACACACCACCAGTTTTTCATAGTGAATTTGCTGATTGGCCATTGGCATGCCTAGACCCGTCATATGGGAAAACAAAGGGACTGGCACATATCACTAACATTGTAAAATATTACAATGATATATTCTTTCCCTATGTAAAGCCGCTGCTGTCGGAACTTTACACTGTTGTGACACCTGCGAGGAGTTACAAAATAGCTGAATTCATTAACAAAGCCGATGGCCATCTAGCTCAATGTCCTGAGCCTCCTGAAATATTACCTTTCCCAAGCCTTCCTGTTATGTCTGTGGAAGAAAAGTCTGCCGCACACTATGCATGTGTCTCTCCAATAGGATCATCTGAGATTTCAAAACCGAGTCTGAGTTTTAAGGAGATTATAGGCAGCTATAAGAAGCAACCACGGTGCAACCCACGTGTTTTTGATAGCGTATTTGTTGATTGGTCATTGGCATGCAAGGACTCAGCATTTGGTAAAACAATAGGACATGAGCATGTCGACATTGTTACATTCTGCAATGATATATTTGTTCCCTCTGTAGAGTCACTACTTTTGGAACTTGGCGCTGAAGGGGAAGCTGTGAAAAGTTGCTGA
Protein sequence

>MsG0280008001.01.T01

MAPGKTLMWEIPTSQRNVDYFLKSYASWGEDVTDVLSSRAHNIVQTIFPDNWPNRKIRRFDTLTLYYTVLERVCRAKKKEPETLHEILTSDIFHRCLLACAAADQVLQITRTSSTVTKMFPADYVLESSGITAFDLSHNDDGPQKRVGIITFYNDIFAPSVWPLVMELVTDEETVKSDQLAEVVNSKDGTYLFVCLAKFAFNCLPDFHCYASSATPDLCDFLFTGHLAQCLVSPKIVPFPRFPVMHREKRYPTRNLRVSPLSSSEDLTFPGIIASYRLQPQYTPPVFHSEFADWPLACLDPSYGKTKGLAHITNIVKYYNDIFFPYVKPLLSELYTVVTPARSYKIAEFINKADGHLAQCPEPPEILPFPSLPVMSVEEKSAAHYACVSPIGSSEISKPSLSFKEIIGSYKKQPRCNPRVFDSVFVDWSLACKDSAFGKTIGHEHVDIVTFCNDIFVPSVESLLLELGAEGEAVKSC*