AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008003.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008003.01.T01 MTR_3g072200 73.832 214 39 2 1 200 1 211 8.23e-103 307
MsG0280008003.01.T01 MTR_3g015530 73.529 170 37 1 26 187 33 202 6.24e-89 261
MsG0280008003.01.T01 MTR_2g026585 63.319 229 25 5 1 200 1 199 4.64e-88 264
MsG0280008003.01.T01 MTR_1g081740 65.657 198 24 3 8 191 22 189 2.32e-82 243
MsG0280008003.01.T01 MTR_4g051638 78.523 149 24 1 11 151 92 240 8.86e-79 236
MsG0280008003.01.T01 MTR_7g050385 77.551 147 25 1 11 149 83 229 1.68e-77 232
MsG0280008003.01.T01 MTR_2g067930 64.921 191 40 1 10 200 31 194 1.15e-69 211
MsG0280008003.01.T01 MTR_3g437000 78.626 131 19 2 1 123 1 130 1.59e-67 203
MsG0280008003.01.T01 MTR_3g462670 56.085 189 49 1 12 200 27 181 9.05e-63 194
MsG0280008003.01.T01 MTR_4g057300 75.410 122 30 0 79 200 1 122 1.13e-62 198
MsG0280008003.01.T01 MTR_4g119600 53.684 190 83 2 14 199 36 224 8.79e-62 196
MsG0280008003.01.T01 MTR_6g075990 53.439 189 83 2 15 199 55 242 5.12e-61 191
MsG0280008003.01.T01 MTR_7g106560 56.808 213 47 6 1 200 1 181 3.00e-60 187
MsG0280008003.01.T01 MTR_5g060540 56.383 188 49 3 8 187 8 170 8.02e-59 189
MsG0280008003.01.T01 MTR_1g059880 70.769 130 24 1 8 137 59 174 4.43e-58 182
MsG0280008003.01.T01 MTR_3g030230 82.692 104 18 0 77 180 69 172 1.45e-57 179
MsG0280008003.01.T01 MTR_1g058140 53.403 191 42 2 10 200 52 195 3.27e-56 178
MsG0280008003.01.T01 MTR_4g049670 67.407 135 21 2 8 142 17 128 1.83e-53 167
MsG0280008003.01.T01 MTR_5g031650 50.568 176 78 3 7 178 55 225 7.19e-53 169
MsG0280008003.01.T01 MTR_3g077875 45.503 189 94 3 14 200 64 245 1.49e-50 165
MsG0280008003.01.T01 MTR_8g107490 53.691 149 68 1 39 187 44 191 3.27e-49 162
MsG0280008003.01.T01 MTR_6g089230 67.521 117 20 1 84 200 28 126 3.35e-48 157
MsG0280008003.01.T01 MTR_8g445570 76.289 97 22 1 103 199 7 102 3.71e-48 153
MsG0280008003.01.T01 MTR_3g067290 49.162 179 82 2 16 194 52 221 7.68e-48 156
MsG0280008003.01.T01 MTR_4g057975 53.378 148 67 2 33 179 52 198 7.80e-47 153
MsG0280008003.01.T01 MTR_4g113170 84.946 93 14 0 110 202 72 164 5.58e-46 161
MsG0280008003.01.T01 MTR_6g026910 46.047 215 28 4 1 200 1 142 3.58e-45 150
MsG0280008003.01.T01 MTR_8g009330 51.592 157 68 5 4 159 56 205 7.70e-45 149
MsG0280008003.01.T01 MTR_2g451070 63.115 122 22 2 1 99 1 122 8.05e-45 145
MsG0280008003.01.T01 MTR_7g050365 63.492 126 17 2 75 200 15 111 2.29e-43 144
MsG0280008003.01.T01 MTR_0116s0050 41.294 201 81 3 5 200 4 172 1.22e-41 139
MsG0280008003.01.T01 MTR_5g006100 45.405 185 94 4 18 200 42 221 2.14e-41 148
MsG0280008003.01.T01 MTR_3g034840 43.713 167 85 3 12 176 52 211 2.09e-40 137
MsG0280008003.01.T01 MTR_0599s0020 43.713 167 85 3 12 176 52 211 2.09e-40 137
MsG0280008003.01.T01 MTR_5g071980 68.868 106 10 2 1 83 1 106 3.35e-40 138
MsG0280008003.01.T01 MTR_8g103800 41.753 194 79 3 16 199 25 194 3.37e-40 139
MsG0280008003.01.T01 MTR_3g087440 48.322 149 74 2 34 180 78 225 1.65e-39 135
MsG0280008003.01.T01 MTR_1g098990 38.806 201 74 2 16 199 25 193 3.44e-39 135
MsG0280008003.01.T01 MTR_1g012760 36.994 173 105 2 27 199 28 196 2.25e-36 128
MsG0280008003.01.T01 MTR_1g012760 36.994 173 105 2 27 199 39 207 3.02e-36 128
MsG0280008003.01.T01 MTR_8g020433 59.615 104 42 0 96 199 72 175 2.41e-35 129
MsG0280008003.01.T01 MTR_6g029530 39.080 174 98 2 34 200 498 670 5.21e-35 130
MsG0280008003.01.T01 MTR_8g038805 64.198 81 29 0 79 159 52 132 1.16e-34 120
MsG0280008003.01.T01 MTR_6g464570 45.070 142 71 4 33 169 13 152 6.53e-34 119
MsG0280008003.01.T01 MTR_6g090600 56.311 103 44 1 52 154 1 102 9.96e-34 116
MsG0280008003.01.T01 MTR_5g046245 62.222 90 34 0 110 199 5 94 6.17e-33 118
MsG0280008003.01.T01 MTR_5g046245 53.947 76 32 1 99 171 135 210 8.62e-20 84.0
MsG0280008003.01.T01 MTR_5g060510 53.741 147 35 3 6 143 36 158 6.65e-33 116
MsG0280008003.01.T01 MTR_7g024830 82.812 64 11 0 137 200 1 64 2.37e-32 112
MsG0280008003.01.T01 MTR_5g046160 38.182 165 85 3 35 199 42 189 2.63e-32 117
MsG0280008003.01.T01 MTR_6g084740 62.245 98 14 2 1 75 1 98 4.88e-32 114
MsG0280008003.01.T01 MTR_0156s0040 50.407 123 59 1 79 199 1 123 8.06e-32 114
MsG0280008003.01.T01 MTR_4g120790 36.508 189 83 4 12 200 48 199 2.00e-31 114
MsG0280008003.01.T01 MTR_2g096070 44.295 149 52 2 39 187 83 200 1.45e-30 118
MsG0280008003.01.T01 MTR_3g116710 35.032 157 98 2 34 187 78 233 1.81e-28 107
MsG0280008003.01.T01 MTR_1g052890 59.770 87 35 0 113 199 2 88 1.99e-28 108
MsG0280008003.01.T01 MTR_5g079560 37.222 180 100 5 14 187 60 232 4.72e-28 106
MsG0280008003.01.T01 MTR_8g095070 38.537 205 84 7 5 199 20 192 1.15e-27 105
MsG0280008003.01.T01 MTR_1g099140 31.288 163 108 2 40 199 89 250 6.93e-27 107
MsG0280008003.01.T01 MTR_2g090505 30.769 169 113 2 34 199 83 250 8.20e-27 104
MsG0280008003.01.T01 MTR_2g461140 37.888 161 67 4 41 197 48 179 1.27e-26 100
MsG0280008003.01.T01 MTR_3g467720 58.667 75 31 0 119 193 64 138 2.27e-26 99.0
MsG0280008003.01.T01 MTR_7g065910 46.218 119 53 2 80 196 34 143 9.99e-26 102
MsG0280008003.01.T01 MTR_7g034570 42.857 119 60 1 75 193 71 181 1.33e-24 95.9
MsG0280008003.01.T01 MTR_7g060350 37.952 166 80 4 7 172 33 175 2.12e-24 95.1
MsG0280008003.01.T01 MTR_2g073060 54.255 94 40 3 10 101 75 167 2.43e-24 94.4
MsG0280008003.01.T01 MTR_4g066090 57.831 83 35 0 115 197 70 152 1.14e-23 92.4
MsG0280008003.01.T01 MTR_7g057800 49.057 106 34 3 6 92 21 125 1.26e-23 94.7
MsG0280008003.01.T01 MTR_7g057800 47.917 96 41 2 14 101 161 255 1.64e-20 86.7
MsG0280008003.01.T01 MTR_1g080040 45.370 108 57 1 80 185 1 108 6.66e-23 90.1
MsG0280008003.01.T01 MTR_5g070810 44.340 106 54 3 53 156 10 112 2.86e-22 87.4
MsG0280008003.01.T01 MTR_7g064870 36.429 140 74 4 11 148 31 157 3.96e-22 89.0
MsG0280008003.01.T01 MTR_7g010970 44.348 115 58 3 84 193 6 119 4.56e-22 90.1
MsG0280008003.01.T01 MTR_0528s0010 40.625 96 56 1 104 199 17 111 2.18e-21 86.3
MsG0280008003.01.T01 MTR_0219s0080 49.074 108 42 4 7 105 22 125 5.43e-21 84.7
MsG0280008003.01.T01 MTR_6g037570 55.670 97 38 2 33 125 74 169 5.45e-21 87.8
MsG0280008003.01.T01 MTR_2g023130 40.659 91 54 0 109 199 58 148 3.51e-20 85.1
MsG0280008003.01.T01 MTR_1g043440 45.977 87 47 0 114 200 166 252 1.08e-19 85.1
MsG0280008003.01.T01 MTR_3g045850 48.101 79 39 2 33 111 71 147 1.31e-19 81.6
MsG0280008003.01.T01 MTR_8g463940 54.878 82 35 2 33 113 88 168 1.37e-19 82.4
MsG0280008003.01.T01 MTR_4g100470 38.583 127 67 2 74 200 51 166 3.66e-19 81.6
MsG0280008003.01.T01 MTR_5g046145 32.624 141 88 3 40 180 125 258 5.27e-19 84.0
MsG0280008003.01.T01 MTR_1g075420 45.918 98 45 3 14 111 25 114 8.05e-19 79.0
MsG0280008003.01.T01 MTR_1g088955 45.098 102 25 2 56 157 36 106 9.17e-19 79.3
MsG0280008003.01.T01 MTR_8g467980 52.857 70 32 1 40 109 76 144 1.53e-18 78.6
MsG0280008003.01.T01 MTR_0341s0040 44.000 100 38 2 16 98 25 123 1.93e-18 78.2
MsG0280008003.01.T01 MTR_3g110070 45.631 103 44 3 3 94 18 119 2.18e-18 78.2
MsG0280008003.01.T01 MTR_4g051890 59.677 62 25 0 128 189 1 62 2.41e-18 75.9
MsG0280008003.01.T01 MTR_2g027000 47.059 85 43 1 115 197 90 174 2.59e-18 79.0
MsG0280008003.01.T01 MTR_2g067720 48.485 99 44 3 11 105 28 123 2.65e-18 77.8
MsG0280008003.01.T01 MTR_2g026605 45.536 112 46 5 5 105 20 127 2.72e-18 77.8
MsG0280008003.01.T01 MTR_0340s0010 46.154 104 44 3 6 98 63 165 8.73e-18 77.8
MsG0280008003.01.T01 MTR_8g028020 51.389 72 35 0 128 199 1 72 4.16e-17 74.7
MsG0280008003.01.T01 MTR_5g018790 58.730 63 26 0 137 199 1 63 5.94e-17 79.0
MsG0280008003.01.T01 MTR_5g032220 26.627 169 104 3 34 199 71 222 3.02e-16 76.6
MsG0280008003.01.T01 MTR_2g030885 47.000 100 42 4 7 96 22 120 1.00e-15 75.1
MsG0280008003.01.T01 MTR_6g019000 56.667 60 25 1 33 92 59 117 1.05e-15 70.5
MsG0280008003.01.T01 MTR_4g051612 43.243 111 52 4 12 112 43 152 3.85e-15 71.2
MsG0280008003.01.T01 MTR_5g072970 39.474 76 46 0 124 199 43 118 1.50e-14 70.9
MsG0280008003.01.T01 MTR_3g007220 54.098 61 28 0 137 197 1 61 1.90e-14 67.0
MsG0280008003.01.T01 MTR_1g075860 53.448 58 26 1 33 90 48 104 2.93e-14 67.0
MsG0280008003.01.T01 MTR_5g071805 56.140 57 25 0 128 184 1 57 3.74e-14 66.6
MsG0280008003.01.T01 MTR_2g030640 54.237 59 27 0 128 186 1 59 4.59e-14 64.7
MsG0280008003.01.T01 MTR_0632s0010 51.562 64 31 0 137 200 5 68 6.88e-14 66.2
MsG0280008003.01.T01 MTR_8g446840 47.368 76 35 2 106 181 12 82 8.10e-14 64.7
MsG0280008003.01.T01 MTR_5g015710 50.617 81 37 2 34 112 76 155 8.82e-14 67.4
MsG0280008003.01.T01 MTR_3g434990 40.385 104 49 4 5 96 34 136 2.00e-13 65.5
MsG0280008003.01.T01 MTR_8g016360 31.343 134 87 3 19 149 2 133 3.66e-13 64.3
MsG0280008003.01.T01 MTR_7g056020 27.011 174 96 3 34 201 383 531 5.82e-13 67.4
MsG0280008003.01.T01 MTR_6g018990 33.333 144 53 4 5 137 20 131 8.26e-13 63.5
MsG0280008003.01.T01 MTR_5g055912 54.902 51 23 0 110 160 10 60 9.68e-13 61.2
MsG0280008003.01.T01 MTR_8g059020 41.667 96 44 3 3 87 109 203 1.55e-12 64.7
MsG0280008003.01.T01 MTR_5g098640 44.156 77 39 2 10 86 38 110 4.39e-12 62.4
MsG0280008003.01.T01 MTR_6g081290 36.275 102 53 2 80 176 3 97 5.07e-12 60.1
MsG0280008003.01.T01 MTR_5g073000 36.842 76 48 0 124 199 121 196 8.18e-12 63.9
MsG0280008003.01.T01 MTR_2g046540 40.206 97 57 1 2 98 52 147 2.52e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAATTGGCCATTCTTAA+TGG 0.211843 2:-24174206 MsG0280008003.01.T01:CDS
TGACAAACTTGAGGAATAAA+AGG 0.231079 2:-24174061 MsG0280008003.01.T01:CDS
AGCAAATAGGGCTGGATTTA+CGG 0.276740 2:-24174399 MsG0280008003.01.T01:CDS
AGCGGGAGCTTCAACCTTAA+TGG 0.277606 2:+24174547 None:intergenic
GGAAGACAATGCTTGGAAAT+TGG 0.294672 2:-24174219 MsG0280008003.01.T01:CDS
AGATAATGTCGATTCCATTA+AGG 0.321813 2:-24174561 MsG0280008003.01.T01:CDS
GGGTCCGTCGACAAGCAAAT+AGG 0.324624 2:-24174412 MsG0280008003.01.T01:CDS
CTGGATTTACGGTTATCATT+AGG 0.337717 2:-24174388 MsG0280008003.01.T01:CDS
GTCGTCCTCCGTTAATCTTC+CGG 0.345153 2:+24174136 None:intergenic
TGAACGTCATAAATTCAAAA+AGG 0.360066 2:-24174003 MsG0280008003.01.T01:CDS
ACGTAGACTTCGACCTTAGC+GGG 0.397822 2:+24174530 None:intergenic
TTTATCTTTCCATGTGTCTT+GGG 0.412580 2:+24174451 None:intergenic
ATAGCAGGGCACCTTCTTGC+CGG 0.416513 2:-24174155 MsG0280008003.01.T01:CDS
AGAAGGTGCCCTGCTATATA+CGG 0.418034 2:+24174161 None:intergenic
CCTTCTTGCCGGAAGATTAA+CGG 0.427545 2:-24174144 MsG0280008003.01.T01:CDS
CACAAAATGCATCAAAGAAC+AGG 0.428325 2:-24174940 None:intergenic
ACATGACTTGACCGATTCTT+CGG 0.433021 2:-24174102 MsG0280008003.01.T01:CDS
AGGTGCGTGGATATGTCGTT+AGG 0.439715 2:-24174241 MsG0280008003.01.T01:CDS
AAGAAATGATATGTTGGAGT+TGG 0.457867 2:-24174351 MsG0280008003.01.T01:CDS
GGTCCGTCGACAAGCAAATA+GGG 0.479832 2:-24174411 MsG0280008003.01.T01:CDS
AACGTAGACTTCGACCTTAG+CGG 0.496689 2:+24174529 None:intergenic
GACTTGCTTGATATTTGTCA+TGG 0.506902 2:+24174031 None:intergenic
GAGATGGTTCCGTATATAGC+AGG 0.514903 2:-24174170 MsG0280008003.01.T01:CDS
AGGCAAAAGGGGTGACTTGA+CGG 0.524170 2:-24173983 None:intergenic
CGTCGACAAGCAAATAGGGC+TGG 0.526515 2:-24174407 MsG0280008003.01.T01:CDS
AAAGTGTGGGTGTTTGTTCA+AGG 0.533208 2:-24174261 MsG0280008003.01.T01:CDS
CCGTTAATCTTCCGGCAAGA+AGG 0.533693 2:+24174144 None:intergenic
TGAAGGAAGAAATGATATGT+TGG 0.539035 2:-24174357 MsG0280008003.01.T01:CDS
ACAATTAGATCAAGAAAGTG+TGG 0.545273 2:-24174275 MsG0280008003.01.T01:CDS
GTTGTGAACGCCATTAAGAA+TGG 0.548117 2:+24174196 None:intergenic
TCGTTAGGGAAGACAATGCT+TGG 0.556018 2:-24174226 MsG0280008003.01.T01:CDS
GGTGCGTGGATATGTCGTTA+GGG 0.556776 2:-24174240 MsG0280008003.01.T01:CDS
CGTCAATTCCGATGTGGACA+CGG 0.557951 2:-24174489 MsG0280008003.01.T01:CDS
CAGCCCTATTTGCTTGTCGA+CGG 0.576051 2:+24174408 None:intergenic
CGAAGTCTACGTTAAAGTTG+AGG 0.580220 2:-24174519 MsG0280008003.01.T01:CDS
TAAGGTTGAAGCTCCCGCTA+AGG 0.581885 2:-24174543 MsG0280008003.01.T01:CDS
CTATATACGGAACCATCTCA+TGG 0.592576 2:+24174174 None:intergenic
TGGCGTTCACAACCATGAGA+TGG 0.601420 2:-24174186 MsG0280008003.01.T01:CDS
GGGTGTTTGTTCAAGGTGCG+TGG 0.604884 2:-24174254 MsG0280008003.01.T01:CDS
CAATTAGATCAAGAAAGTGT+GGG 0.605428 2:-24174274 MsG0280008003.01.T01:CDS
TGTTGGAGTTGGTTTGTGAA+CGG 0.610780 2:-24174340 MsG0280008003.01.T01:CDS
AGATGGTTCCGTATATAGCA+GGG 0.644359 2:-24174169 MsG0280008003.01.T01:CDS
ATCATTAGGAGATCTTGTGA+AGG 0.645829 2:-24174374 MsG0280008003.01.T01:CDS
GAAATGAGCCGTGTCCACAT+CGG 0.661366 2:+24174481 None:intergenic
TTCAAGCGTCAATTCCGATG+TGG 0.715226 2:-24174495 MsG0280008003.01.T01:CDS
GAGTTGGTTTGTGAACGGAG+CGG 0.720933 2:-24174335 MsG0280008003.01.T01:CDS
TCTTGCCGGAAGATTAACGG+AGG 0.737009 2:-24174141 MsG0280008003.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAAAGAAAAAAAAAT+TGG + Chr2:24174186-24174205 None:intergenic 10.0%
!!! AAGTTTGTCAAAATATTTTT+TGG + Chr2:24174849-24174868 None:intergenic 15.0%
!! AAAGATAAAAACGAATTGTT+CGG - Chr2:24174483-24174502 MsG0280008003.01.T01:CDS 20.0%
!! ATAAATTCAAAAAGGCAAAA+GGG - Chr2:24174925-24174944 MsG0280008003.01.T01:intron 20.0%
!! GAAAAATGCATTAAATGTAA+TGG + Chr2:24174023-24174042 None:intergenic 20.0%
!!! AAAATATTTTGACAAACTTG+AGG - Chr2:24174850-24174869 MsG0280008003.01.T01:intron 20.0%
!!! TTACATTTAATGCATTTTTC+TGG - Chr2:24174023-24174042 MsG0280008003.01.T01:CDS 20.0%
! AAAAAGTTGCTTATTTGACA+AGG + Chr2:24174325-24174344 None:intergenic 25.0%
! CATAAATTCAAAAAGGCAAA+AGG - Chr2:24174924-24174943 MsG0280008003.01.T01:intron 25.0%
! TAAATTCAAAAAGGCAAAAG+GGG - Chr2:24174926-24174945 MsG0280008003.01.T01:intron 25.0%
! TGAACGTCATAAATTCAAAA+AGG - Chr2:24174917-24174936 MsG0280008003.01.T01:intron 25.0%
!!! CTGGTTTTTTTTTTTTGCAT+GGG - Chr2:24174042-24174061 MsG0280008003.01.T01:CDS 25.0%
!!! TCTGGTTTTTTTTTTTTGCA+TGG - Chr2:24174041-24174060 MsG0280008003.01.T01:CDS 25.0%
AAAAATTTCTAAGTCTCCAG+CGG + Chr2:24174120-24174139 None:intergenic 30.0%
AAGAAATGATATGTTGGAGT+TGG - Chr2:24174569-24174588 MsG0280008003.01.T01:intron 30.0%
ACAATTAGATCAAGAAAGTG+TGG - Chr2:24174645-24174664 MsG0280008003.01.T01:intron 30.0%
ATAAAAACGAATTGTTCGGT+TGG - Chr2:24174487-24174506 MsG0280008003.01.T01:CDS 30.0%
TAAAAACGAATTGTTCGGTT+GGG - Chr2:24174488-24174507 MsG0280008003.01.T01:CDS 30.0%
TGAAGGAAGAAATGATATGT+TGG - Chr2:24174563-24174582 MsG0280008003.01.T01:intron 30.0%
TGACAAACTTGAGGAATAAA+AGG - Chr2:24174859-24174878 MsG0280008003.01.T01:intron 30.0%
TTTATCTTTCCATGTGTCTT+GGG + Chr2:24174472-24174491 None:intergenic 30.0%
! CAATTAGATCAAGAAAGTGT+GGG - Chr2:24174646-24174665 MsG0280008003.01.T01:intron 30.0%
! TTTTATCTTTCCATGTGTCT+TGG + Chr2:24174473-24174492 None:intergenic 30.0%
!! AGATAATGTCGATTCCATTA+AGG - Chr2:24174359-24174378 MsG0280008003.01.T01:CDS 30.0%
!! TCATTCTTCACTTTTGTCTT+CGG + Chr2:24174624-24174643 None:intergenic 30.0%
ATCATTAGGAGATCTTGTGA+AGG - Chr2:24174546-24174565 MsG0280008003.01.T01:CDS 35.0%
CTGGATTTACGGTTATCATT+AGG - Chr2:24174532-24174551 MsG0280008003.01.T01:CDS 35.0%
TGGAAATTGGCCATTCTTAA+TGG - Chr2:24174714-24174733 MsG0280008003.01.T01:intron 35.0%
! GACTTGCTTGATATTTGTCA+TGG + Chr2:24174892-24174911 None:intergenic 35.0%
!!! TTTTGGTTTCACCGAAGAAT+CGG + Chr2:24174832-24174851 None:intergenic 35.0%
AAAGTGTGGGTGTTTGTTCA+AGG - Chr2:24174659-24174678 MsG0280008003.01.T01:intron 40.0%
AGATGGTTCCGTATATAGCA+GGG - Chr2:24174751-24174770 MsG0280008003.01.T01:intron 40.0%
AGCAAATAGGGCTGGATTTA+CGG - Chr2:24174521-24174540 MsG0280008003.01.T01:CDS 40.0%
CGAAGTCTACGTTAAAGTTG+AGG - Chr2:24174401-24174420 MsG0280008003.01.T01:CDS 40.0%
CTATATACGGAACCATCTCA+TGG + Chr2:24174749-24174768 None:intergenic 40.0%
GGAAGACAATGCTTGGAAAT+TGG - Chr2:24174701-24174720 MsG0280008003.01.T01:intron 40.0%
GTTGTGAACGCCATTAAGAA+TGG + Chr2:24174727-24174746 None:intergenic 40.0%
! ACATGACTTGACCGATTCTT+CGG - Chr2:24174818-24174837 MsG0280008003.01.T01:intron 40.0%
! GTTTTCACAGTAGCTATTGC+AGG + Chr2:24174154-24174173 None:intergenic 40.0%
! TCTTTTCAACCCAAGACACA+TGG - Chr2:24174460-24174479 MsG0280008003.01.T01:CDS 40.0%
!! TGTTGGAGTTGGTTTGTGAA+CGG - Chr2:24174580-24174599 MsG0280008003.01.T01:intron 40.0%
AACGTAGACTTCGACCTTAG+CGG + Chr2:24174394-24174413 None:intergenic 45.0%
CCTTCTTGCCGGAAGATTAA+CGG - Chr2:24174776-24174795 MsG0280008003.01.T01:intron 45.0%
GAGATGGTTCCGTATATAGC+AGG - Chr2:24174750-24174769 MsG0280008003.01.T01:intron 45.0%
TCGTTAGGGAAGACAATGCT+TGG - Chr2:24174694-24174713 MsG0280008003.01.T01:intron 45.0%
TTCAAGCGTCAATTCCGATG+TGG - Chr2:24174425-24174444 MsG0280008003.01.T01:CDS 45.0%
!! AGAAGGTGCCCTGCTATATA+CGG + Chr2:24174762-24174781 None:intergenic 45.0%
ACGTAGACTTCGACCTTAGC+GGG + Chr2:24174393-24174412 None:intergenic 50.0%
AGCGGGAGCTTCAACCTTAA+TGG + Chr2:24174376-24174395 None:intergenic 50.0%
AGGTGCGTGGATATGTCGTT+AGG - Chr2:24174679-24174698 MsG0280008003.01.T01:intron 50.0%
CAGCCCTATTTGCTTGTCGA+CGG + Chr2:24174515-24174534 None:intergenic 50.0%
CCGTTAATCTTCCGGCAAGA+AGG + Chr2:24174779-24174798 None:intergenic 50.0%
CGTCAATTCCGATGTGGACA+CGG - Chr2:24174431-24174450 MsG0280008003.01.T01:CDS 50.0%
GAAATGAGCCGTGTCCACAT+CGG + Chr2:24174442-24174461 None:intergenic 50.0%
GGTCCGTCGACAAGCAAATA+GGG - Chr2:24174509-24174528 MsG0280008003.01.T01:CDS 50.0%
GGTGCGTGGATATGTCGTTA+GGG - Chr2:24174680-24174699 MsG0280008003.01.T01:intron 50.0%
GTCGTCCTCCGTTAATCTTC+CGG + Chr2:24174787-24174806 None:intergenic 50.0%
TAAGGTTGAAGCTCCCGCTA+AGG - Chr2:24174377-24174396 MsG0280008003.01.T01:CDS 50.0%
TCTTGCCGGAAGATTAACGG+AGG - Chr2:24174779-24174798 MsG0280008003.01.T01:intron 50.0%
TGGCGTTCACAACCATGAGA+TGG - Chr2:24174734-24174753 MsG0280008003.01.T01:intron 50.0%
!! GAGTTGGTTTGTGAACGGAG+CGG - Chr2:24174585-24174604 MsG0280008003.01.T01:intron 50.0%
AGCGGCAGTTAACTACCGCT+GGG - Chr2:24174075-24174094 MsG0280008003.01.T01:CDS 55.0%
CGTCGACAAGCAAATAGGGC+TGG - Chr2:24174513-24174532 MsG0280008003.01.T01:CDS 55.0%
GGGTCCGTCGACAAGCAAAT+AGG - Chr2:24174508-24174527 MsG0280008003.01.T01:CDS 55.0%
GGGTGTTTGTTCAAGGTGCG+TGG - Chr2:24174666-24174685 MsG0280008003.01.T01:intron 55.0%
TAACTACCGCTGGGAGTGAG+CGG - Chr2:24174084-24174103 MsG0280008003.01.T01:CDS 55.0%
TAGCGGCAGTTAACTACCGC+TGG - Chr2:24174074-24174093 MsG0280008003.01.T01:CDS 55.0%
TGCATGGGAACGCGTTGTAG+CGG - Chr2:24174057-24174076 MsG0280008003.01.T01:CDS 55.0%
! ATAGCAGGGCACCTTCTTGC+CGG - Chr2:24174765-24174784 MsG0280008003.01.T01:intron 55.0%
TAACAGCCGCTCACTCCCAG+CGG + Chr2:24174093-24174112 None:intergenic 60.0%
GAGCGGCTGTTAACTGCCGC+TGG - Chr2:24174101-24174120 MsG0280008003.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 24173986 24174956 24173986 ID=MsG0280008003.01;Name=MsG0280008003.01
Chr2 mRNA 24173986 24174956 24173986 ID=MsG0280008003.01.T01;Parent=MsG0280008003.01;Name=MsG0280008003.01.T01;_AED=0.51;_eAED=0.51;_QI=0|0|0|0.5|1|1|2|0|203
Chr2 exon 24174941 24174956 24174941 ID=MsG0280008003.01.T01:exon:34724;Parent=MsG0280008003.01.T01
Chr2 exon 24173986 24174581 24173986 ID=MsG0280008003.01.T01:exon:34723;Parent=MsG0280008003.01.T01
Chr2 CDS 24174941 24174956 24174941 ID=MsG0280008003.01.T01:cds;Parent=MsG0280008003.01.T01
Chr2 CDS 24173986 24174581 24173986 ID=MsG0280008003.01.T01:cds;Parent=MsG0280008003.01.T01
Gene Sequence

>MsG0280008003.01.T01

ATGCATCAAAGAACAGATAATGTCGATTCCATTAAGGTTGAAGCTCCCGCTAAGGTCGAAGTCTACGTTAAAGTTGAGGCTTCAAGCGTCAATTCCGATGTGGACACGGCTCATTTCTTTTCAACCCAAGACACATGGAAAGATAAAAACGAATTGTTCGGTTGGGTCCGTCGACAAGCAAATAGGGCTGGATTTACGGTTATCATTAGGAGATCTTGTGAAGGAAGAAATGATATGTTGGAGTTGGTTTGTGAACGGAGCGGCGAGCACAAAGTACCGAAGACAAAAGTGAAGAATGAAACAATTAGATCAAGAAAGTGTGGGTGTTTGTTCAAGGTGCGTGGATATGTCGTTAGGGAAGACAATGCTTGGAAATTGGCCATTCTTAATGGCGTTCACAACCATGAGATGGTTCCGTATATAGCAGGGCACCTTCTTGCCGGAAGATTAACGGAGGACGACAAGAAGCTTGTACATGACTTGACCGATTCTTCGGTGAAACCAAAAAATATTTTGACAAACTTGAGGAATAAAAGGAAAGAGTCCATGACAAATATCAAGCAAGTCTACAATGAACGTCATAAATTCAAAAAGGCAAAAGGGGTGACTTGA
Protein sequence

>MsG0280008003.01.T01

MHQRTDNVDSIKVEAPAKVEVYVKVEASSVNSDVDTAHFFSTQDTWKDKNELFGWVRRQANRAGFTVIIRRSCEGRNDMLELVCERSGEHKVPKTKVKNETIRSRKCGCLFKVRGYVVREDNAWKLAILNGVHNHEMVPYIAGHLLAGRLTEDDKKLVHDLTDSSVKPKNILTNLRNKRKESMTNIKQVYNERHKFKKAKGVT*