AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008012.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008012.01.T01 MTR_2g437060 90.268 298 29 0 219 516 98 395 0.0 551
MsG0280008012.01.T01 MTR_2g437060 64.516 217 77 0 3 219 154 370 2.16e-92 287
MsG0280008012.01.T01 MTR_2g437080 78.114 297 65 0 219 515 83 379 1.33e-165 474
MsG0280008012.01.T01 MTR_2g437080 59.447 217 88 0 3 219 139 355 1.29e-85 270
MsG0280008012.01.T01 MTR_2g436400 76.744 301 68 1 210 510 83 381 2.53e-162 466
MsG0280008012.01.T01 MTR_2g436400 60.829 217 85 0 3 219 146 362 1.32e-86 272
MsG0280008012.01.T01 MTR_2g437040 94.977 219 11 0 1 219 137 355 1.17e-150 436
MsG0280008012.01.T01 MTR_2g437040 64.430 298 106 0 219 516 83 380 7.25e-135 396
MsG0280008012.01.T01 MTR_2g437020 68.667 300 91 2 219 516 82 380 2.83e-143 417
MsG0280008012.01.T01 MTR_2g437020 58.525 217 88 1 3 217 138 354 7.00e-83 262
MsG0280008012.01.T01 MTR_2g437030 68.792 298 93 0 219 516 169 466 1.01e-140 414
MsG0280008012.01.T01 MTR_2g437030 61.574 216 83 0 2 217 224 439 4.25e-83 266
MsG0280008012.01.T01 MTR_2g436440 65.657 297 102 0 219 515 89 385 1.74e-137 403
MsG0280008012.01.T01 MTR_2g436440 61.187 219 85 0 1 219 143 361 2.75e-89 279
MsG0280008012.01.T01 MTR_4g119550 52.703 296 139 1 221 515 94 389 5.64e-109 330
MsG0280008012.01.T01 MTR_4g119550 46.759 216 115 0 2 217 148 363 6.49e-69 226
MsG0280008012.01.T01 MTR_2g437160 54.027 298 135 1 219 514 106 403 2.31e-106 324
MsG0280008012.01.T01 MTR_2g437160 43.779 217 120 1 3 217 162 378 1.37e-53 186
MsG0280008012.01.T01 MTR_2g437170 52.492 301 138 3 219 514 98 398 6.97e-103 315
MsG0280008012.01.T01 MTR_2g437170 44.393 214 116 1 7 217 160 373 5.93e-57 195
MsG0280008012.01.T01 MTR_2g437960 51.163 301 144 2 219 516 96 396 2.70e-102 313
MsG0280008012.01.T01 MTR_2g437960 44.954 218 117 1 3 217 152 369 6.01e-58 198
MsG0280008012.01.T01 MTR_2g437960 51.163 301 144 2 219 516 96 396 5.33e-102 313
MsG0280008012.01.T01 MTR_2g437960 44.954 218 117 1 3 217 152 369 9.89e-58 198
MsG0280008012.01.T01 MTR_2g437120 53.177 299 136 2 219 514 94 391 8.92e-101 310
MsG0280008012.01.T01 MTR_2g437120 46.479 213 110 2 3 212 150 361 3.04e-57 196
MsG0280008012.01.T01 MTR_2g438010 52.303 304 136 4 214 510 106 407 9.75e-101 310
MsG0280008012.01.T01 MTR_2g438010 47.706 218 111 1 3 217 169 386 5.57e-64 214
MsG0280008012.01.T01 MTR_2g437200 47.853 326 132 2 219 506 73 398 1.28e-100 308
MsG0280008012.01.T01 MTR_2g437200 47.248 218 112 1 3 217 164 381 3.09e-61 206
MsG0280008012.01.T01 MTR_2g437150 51.678 298 139 3 219 511 98 395 1.15e-99 306
MsG0280008012.01.T01 MTR_2g437150 44.860 214 115 1 7 217 160 373 5.30e-58 198
MsG0280008012.01.T01 MTR_2g437990 50.492 305 147 2 214 514 86 390 2.33e-99 306
MsG0280008012.01.T01 MTR_2g437990 45.794 214 114 1 3 214 149 362 1.57e-59 202
MsG0280008012.01.T01 MTR_2g076320 50.667 300 135 2 219 510 93 387 8.03e-99 304
MsG0280008012.01.T01 MTR_2g076320 44.545 220 115 2 3 219 149 364 3.71e-58 198
MsG0280008012.01.T01 MTR_2g437100 53.584 293 131 3 219 506 103 395 6.15e-97 300
MsG0280008012.01.T01 MTR_2g437100 45.833 216 114 1 7 219 165 380 2.17e-56 194
MsG0280008012.01.T01 MTR_2g437130 50.169 295 147 0 220 514 85 379 2.72e-96 297
MsG0280008012.01.T01 MTR_2g437130 46.512 215 115 0 3 217 140 354 1.30e-60 204
MsG0280008012.01.T01 MTR_2g437180 50.502 299 143 3 219 514 92 388 9.25e-96 296
MsG0280008012.01.T01 MTR_2g437180 44.954 218 117 1 3 217 148 365 1.20e-57 197
MsG0280008012.01.T01 MTR_2g437260 42.350 366 198 6 157 510 6 370 6.95e-95 294
MsG0280008012.01.T01 MTR_2g437260 44.037 218 120 1 2 217 132 349 2.46e-59 201
MsG0280008012.01.T01 MTR_2g438020 44.675 338 149 2 215 514 108 445 1.62e-94 296
MsG0280008012.01.T01 MTR_2g438020 44.292 219 117 2 3 217 203 420 6.94e-55 192
MsG0280008012.01.T01 MTR_2g437240 45.808 334 143 3 219 514 73 406 1.87e-94 293
MsG0280008012.01.T01 MTR_2g437240 46.818 220 114 1 1 217 162 381 1.04e-59 203
MsG0280008012.01.T01 MTR_2g437940 49.664 298 121 3 219 514 92 362 8.17e-89 277
MsG0280008012.01.T01 MTR_2g437940 50.000 176 88 0 37 212 157 332 3.98e-52 181
MsG0280008012.01.T01 MTR_2g436460 47.241 290 152 1 219 507 88 377 9.30e-87 272
MsG0280008012.01.T01 MTR_2g436460 44.240 217 118 3 3 217 144 359 2.95e-54 187
MsG0280008012.01.T01 MTR_2g437090 64.881 168 59 0 349 516 1 168 6.44e-75 234
MsG0280008012.01.T01 MTR_2g437090 56.291 151 66 0 79 229 3 153 5.99e-57 187
MsG0280008012.01.T01 MTR_4g120380 41.608 286 167 0 219 504 85 370 7.91e-74 238
MsG0280008012.01.T01 MTR_4g120380 43.231 229 128 2 2 229 140 367 1.43e-57 196
MsG0280008012.01.T01 MTR_2g019840 45.172 290 155 3 219 506 84 371 7.32e-73 236
MsG0280008012.01.T01 MTR_2g019840 38.532 218 128 4 3 217 140 354 6.99e-42 154
MsG0280008012.01.T01 MTR_4g119580 40.909 286 169 0 219 504 85 370 8.20e-73 236
MsG0280008012.01.T01 MTR_4g119580 45.413 218 119 0 2 219 140 357 8.46e-61 204
MsG0280008012.01.T01 MTR_2g019810 43.793 290 159 3 219 506 72 359 2.04e-71 232
MsG0280008012.01.T01 MTR_2g019810 39.462 223 125 6 1 218 126 343 7.85e-45 162
MsG0280008012.01.T01 MTR_2g437160 56.000 200 85 1 318 514 113 312 1.22e-69 226
MsG0280008012.01.T01 MTR_2g437160 47.126 174 89 1 47 217 114 287 2.03e-47 167
MsG0280008012.01.T01 MTR_4g120380 42.857 266 152 0 219 484 85 350 1.55e-69 229
MsG0280008012.01.T01 MTR_4g120380 44.811 212 115 2 2 212 140 350 1.29e-54 189
MsG0280008012.01.T01 MTR_4g120380 26.110 383 224 16 124 471 58 416 4.27e-17 84.0
MsG0280008012.01.T01 MTR_4g120380 37.500 120 70 1 80 199 302 416 1.87e-15 79.0
MsG0280008012.01.T01 MTR_2g436370 76.636 107 25 0 219 325 89 195 6.75e-47 162
MsG0280008012.01.T01 MTR_4g119570 35.743 249 127 1 256 504 14 229 2.44e-45 159
MsG0280008012.01.T01 MTR_4g119570 36.239 218 106 1 2 219 32 216 1.18e-40 146
MsG0280008012.01.T01 MTR_3g450500 32.877 292 190 2 219 504 79 370 1.32e-43 159
MsG0280008012.01.T01 MTR_3g450500 31.532 222 146 2 2 217 134 355 9.18e-32 126
MsG0280008012.01.T01 MTR_4g007490 32.192 292 191 5 219 504 78 368 9.60e-35 134
MsG0280008012.01.T01 MTR_4g007490 30.942 223 148 3 2 218 132 354 4.36e-25 107
MsG0280008012.01.T01 MTR_8g080990 29.078 282 197 2 222 500 87 368 5.31e-29 118
MsG0280008012.01.T01 MTR_8g080990 29.091 220 153 2 3 219 140 359 3.75e-20 92.8
MsG0280008012.01.T01 MTR_8g081000 26.224 286 208 2 222 504 100 385 6.39e-24 103
MsG0280008012.01.T01 MTR_8g081000 24.091 220 164 2 3 219 153 372 5.40e-14 74.3
MsG0280008012.01.T01 MTR_8g081000 26.224 286 208 2 222 504 100 385 6.64e-24 103
MsG0280008012.01.T01 MTR_8g081000 24.091 220 164 2 3 219 153 372 6.56e-14 73.9
MsG0280008012.01.T01 MTR_8g081000 26.224 286 208 2 222 504 100 385 9.38e-24 103
MsG0280008012.01.T01 MTR_8g081000 24.091 220 164 2 3 219 153 372 5.19e-14 74.3
MsG0280008012.01.T01 MTR_2g436380 53.535 99 43 2 349 447 1 96 4.27e-23 99.8
MsG0280008012.01.T01 MTR_2g436380 43.119 109 55 3 81 189 5 106 1.66e-19 89.4
MsG0280008012.01.T01 MTR_3g085240 45.556 90 32 1 407 496 175 247 1.45e-16 80.1
MsG0280008012.01.T01 MTR_3g085240 50.000 60 30 0 135 194 175 234 3.26e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008012.01.T01 AT5G07900 36.082 291 180 3 219 503 109 399 6.12e-57 195
MsG0280008012.01.T01 AT5G07900 33.484 221 141 3 3 217 165 385 2.57e-32 128
MsG0280008012.01.T01 AT1G21150 29.553 291 199 3 219 503 60 350 6.29e-38 142
MsG0280008012.01.T01 AT1G21150 30.198 202 134 3 3 198 116 316 1.41e-20 93.6
MsG0280008012.01.T01 AT1G21150 29.553 291 199 3 219 503 96 386 1.59e-37 142
MsG0280008012.01.T01 AT1G21150 30.198 202 134 3 3 198 152 352 1.54e-20 94.0
MsG0280008012.01.T01 AT1G21150 29.553 291 199 3 219 503 160 450 6.20e-37 142
MsG0280008012.01.T01 AT1G21150 30.198 202 134 3 3 198 216 416 2.99e-20 94.0
MsG0280008012.01.T01 AT5G64950 28.247 308 195 5 219 511 79 375 5.48e-26 110
MsG0280008012.01.T01 AT5G64950 31.197 234 134 7 5 219 137 362 5.36e-17 83.6
MsG0280008012.01.T01 AT1G61980 26.923 364 219 10 186 504 55 416 6.45e-24 104
MsG0280008012.01.T01 AT1G61980 27.041 196 136 5 31 221 210 403 6.46e-16 80.5
MsG0280008012.01.T01 AT1G61980 26.923 364 219 10 186 504 55 416 6.45e-24 104
MsG0280008012.01.T01 AT1G61980 27.041 196 136 5 31 221 210 403 6.46e-16 80.5
MsG0280008012.01.T01 AT1G61980 26.923 364 219 10 186 504 55 416 6.45e-24 104
MsG0280008012.01.T01 AT1G61980 27.041 196 136 5 31 221 210 403 6.46e-16 80.5
MsG0280008012.01.T01 AT1G61970 25.806 310 187 7 220 489 93 399 2.28e-21 97.1
MsG0280008012.01.T01 AT1G61970 26.816 179 94 4 79 221 225 402 4.18e-13 71.6
MsG0280008012.01.T01 AT1G61970 25.806 310 187 7 220 489 93 399 2.28e-21 97.1
MsG0280008012.01.T01 AT1G61970 26.816 179 94 4 79 221 225 402 4.18e-13 71.6
MsG0280008012.01.T01 AT1G61970 25.806 310 187 7 220 489 93 399 2.28e-21 97.1
MsG0280008012.01.T01 AT1G61970 26.816 179 94 4 79 221 225 402 4.18e-13 71.6
MsG0280008012.01.T01 AT1G61970 25.806 310 187 7 220 489 93 399 2.28e-21 97.1
MsG0280008012.01.T01 AT1G61970 26.816 179 94 4 79 221 225 402 4.18e-13 71.6
MsG0280008012.01.T01 AT1G61970 25.806 310 187 7 220 489 93 399 2.28e-21 97.1
MsG0280008012.01.T01 AT1G61970 26.816 179 94 4 79 221 225 402 4.18e-13 71.6
MsG0280008012.01.T01 AT1G61970 25.806 310 187 7 220 489 93 399 2.28e-21 97.1
MsG0280008012.01.T01 AT1G61970 26.816 179 94 4 79 221 225 402 4.18e-13 71.6
MsG0280008012.01.T01 AT1G61970 25.806 310 187 7 220 489 93 399 2.28e-21 97.1
MsG0280008012.01.T01 AT1G61970 26.816 179 94 4 79 221 225 402 4.18e-13 71.6
MsG0280008012.01.T01 AT1G62120 26.646 319 181 9 219 491 96 407 4.51e-21 96.3
MsG0280008012.01.T01 AT1G62120 33.913 115 75 1 107 220 294 408 8.31e-15 77.0
MsG0280008012.01.T01 AT1G61990 25.788 349 205 10 186 489 55 394 6.55e-19 89.4
MsG0280008012.01.T01 AT1G61990 28.261 184 94 2 76 221 215 398 7.03e-16 80.1
MsG0280008012.01.T01 AT1G61990 25.788 349 205 10 186 489 55 394 6.55e-19 89.4
MsG0280008012.01.T01 AT1G61990 28.261 184 94 2 76 221 215 398 7.03e-16 80.1
MsG0280008012.01.T01 AT1G62085 26.648 364 176 13 186 465 58 414 1.83e-18 88.6
MsG0280008012.01.T01 AT1G62085 33.621 116 75 2 107 221 328 442 1.30e-14 76.6
MsG0280008012.01.T01 AT1G62085 26.648 364 176 13 186 465 58 414 1.83e-18 88.6
MsG0280008012.01.T01 AT1G62085 33.621 116 75 2 107 221 328 442 1.30e-14 76.6
MsG0280008012.01.T01 AT1G62010 23.154 298 189 4 207 466 64 359 5.94e-18 86.7
MsG0280008012.01.T01 AT1G62010 31.304 115 78 1 107 220 272 386 1.55e-14 76.3
MsG0280008012.01.T01 AT5G23930 25.714 350 178 10 219 494 95 436 4.45e-17 84.3
MsG0280008012.01.T01 AT5G23930 27.815 151 100 2 76 221 289 435 1.27e-13 73.6
MsG0280008012.01.T01 AT3G46950 27.068 266 175 7 167 421 34 291 7.31e-17 83.6
MsG0280008012.01.T01 AT3G46950 24.413 213 90 4 79 220 221 433 1.47e-11 67.0
MsG0280008012.01.T01 AT1G62110 27.670 206 142 3 219 419 92 295 2.98e-14 75.5
MsG0280008012.01.T01 AT1G62110 30.833 120 78 2 107 222 325 443 1.89e-13 72.8
MsG0280008012.01.T01 AT1G61960 23.030 330 170 7 220 471 93 416 1.00e-12 70.5
MsG0280008012.01.T01 AT1G61960 28.205 117 81 1 107 220 324 440 2.78e-11 66.2
MsG0280008012.01.T01 AT1G62150 31.250 112 76 1 107 217 331 442 2.22e-11 66.6

Find 102 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATCTGACAAGGAAATTT+TGG 0.125855 2:+24286708 MsG0280008012.01.T01:CDS
AATTGCAATCCAACTTTATT+TGG 0.152258 2:+24282930 MsG0280008012.01.T01:CDS
GTGAAAGAGTTAAAGGATTT+AGG 0.167996 2:+24283074 MsG0280008012.01.T01:CDS
CGACCAACCCCATTTCTTAA+AGG 0.171385 2:-24286992 None:intergenic
TGCTAAAACACCAAGGGTTT+TGG 0.198044 2:+24283325 MsG0280008012.01.T01:CDS
GTGAAGGAATTAAAGGATTT+GGG 0.210460 2:+24286883 MsG0280008012.01.T01:CDS
TAAACTCAGTGATGAGCTTT+TGG 0.230631 2:+24283270 MsG0280008012.01.T01:CDS
GGTGAAGGAATTAAAGGATT+TGG 0.236355 2:+24286882 MsG0280008012.01.T01:CDS
TTAATTTAGTGATGAGCTTT+TGG 0.242008 2:+24287079 MsG0280008012.01.T01:CDS
TGACAAAATATCAGGTGTTT+TGG 0.255478 2:-24287136 None:intergenic
GTGCAATTTCTTCTCAATAA+TGG 0.259750 2:+24287198 MsG0280008012.01.T01:CDS
TGAAAGAGTTAAAGGATTTA+GGG 0.262679 2:+24283075 MsG0280008012.01.T01:CDS
GAAGAGAGGTTTGCATAAAA+AGG 0.278062 2:+24283403 MsG0280008012.01.T01:CDS
TATGTTCCTTACTGCAAGTT+TGG 0.287367 2:+24282833 None:intergenic
CAAGTTGGTGAAGGAATTAA+AGG 0.289341 2:+24286876 MsG0280008012.01.T01:CDS
TTTCTCATTCCACAAGGTTT+TGG 0.304420 2:-24286962 None:intergenic
TTATCTTATAAAGTTGTATC+AGG 0.309342 2:+24287317 MsG0280008012.01.T01:CDS
AGACCAGCCCCATTTCTTAA+AGG 0.311413 2:-24283183 None:intergenic
AAATATTGCAAGATTGCTTC+GGG 0.322556 2:+24283010 MsG0280008012.01.T01:CDS
TGAGTTGGTGAAAGAGTTAA+AGG 0.327328 2:+24283067 MsG0280008012.01.T01:CDS
GGTTTCGGATAAATATGTTT+TGG 0.343580 2:-24283138 None:intergenic
AAACTTTGGCAACACCCTTT+TGG 0.344097 2:-24286557 None:intergenic
AGTTGATACCTTTAAGAAAT+GGG 0.353795 2:+24283175 MsG0280008012.01.T01:CDS
AAGTTGATACCTTTAAGAAA+TGG 0.365182 2:+24283174 MsG0280008012.01.T01:CDS
TTGGGTCAATCAGTTGGGTT+GGG 0.365374 2:+24283289 MsG0280008012.01.T01:CDS
TTGGGTCAATCAGTTGGGTT+GGG 0.365374 2:+24287098 MsG0280008012.01.T01:CDS
AAGTTGATGCCTTTAAGAAA+TGG 0.366199 2:+24286983 MsG0280008012.01.T01:CDS
AGTTGATGCCTTTAAGAAAT+GGG 0.371481 2:+24286984 MsG0280008012.01.T01:CDS
AAACTTAATGACAAAATATC+AGG 0.378240 2:-24287144 None:intergenic
AATAGTCCCAACCTATGAAT+TGG 0.380595 2:+24282863 MsG0280008012.01.T01:CDS
CTACTTCTTCCAAATAAAGT+TGG 0.386610 2:-24282939 None:intergenic
GCTTAATTTATCCATTCTTA+AGG 0.397953 2:+24287241 MsG0280008012.01.T01:CDS
CAAACATTAAAAGATTGCTT+AGG 0.402903 2:+24286818 MsG0280008012.01.T01:CDS
GTCAGAAGTAGAAGCGCCTT+TGG 0.405353 2:-24286593 None:intergenic
TAAATATTGCAAGATTGCTT+CGG 0.406570 2:+24283009 MsG0280008012.01.T01:CDS
GTATTTATAAACCAATTCAT+AGG 0.407861 2:-24282874 None:intergenic
TATAAACCAATTCATAGGTT+GGG 0.416412 2:-24282869 None:intergenic
AATAGTCCCAACCTATGAAT+TGG 0.421560 2:+24286672 MsG0280008012.01.T01:CDS
GTCTCATCAGTGACTATAAA+CGG 0.428293 2:-24283443 None:intergenic
TTTGGGTCAATCAGTTGGGT+TGG 0.429067 2:+24283288 MsG0280008012.01.T01:CDS
TTTGGGTCAATCAGTTGGGT+TGG 0.429067 2:+24287097 MsG0280008012.01.T01:CDS
GGAAGTAGCCATGGTGCCTT+GGG 0.435586 2:-24286523 None:intergenic
TTCCCTGCGACCCCACCAAA+AGG 0.439725 2:+24286542 MsG0280008012.01.T01:CDS
TCTATGACATGTATATAAAT+CGG 0.442482 2:+24283468 MsG0280008012.01.T01:CDS
GGGAAGTAGCCATGGTGCCT+TGG 0.446977 2:-24286524 None:intergenic
TCTTGTCCAAACTTGCAGTA+AGG 0.462468 2:-24282839 None:intergenic
AAACATTAAAAGATTGCTTA+GGG 0.465201 2:+24286819 MsG0280008012.01.T01:CDS
CTCAATTTCTTTAGAAACCA+TGG 0.466986 2:+24286469 MsG0280008012.01.T01:intron
TGGGAATGATATGACGTAGT+TGG 0.472079 2:-24286504 None:intergenic
AGGCTTACAGACAAGACGCC+AGG 0.477299 2:-24286640 None:intergenic
GAATCTGTACACCAATTCAT+AGG 0.478001 2:-24286683 None:intergenic
GGGAATGATATGACGTAGTT+GGG 0.483432 2:-24286503 None:intergenic
CTGTACACCAATTCATAGGT+TGG 0.484595 2:-24286679 None:intergenic
ATCACAATGCTGATTGAGAA+TGG 0.486666 2:+24286784 MsG0280008012.01.T01:CDS
TTATAAACCAATTCATAGGT+TGG 0.490431 2:-24282870 None:intergenic
TTTAACTCTTTCACCAACTC+AGG 0.490614 2:-24283065 None:intergenic
GATTGCTTAGGGAACATACT+CGG 0.497604 2:+24286830 MsG0280008012.01.T01:CDS
TCAGTTGGGTTGGGATGCTA+TGG 0.506950 2:+24283298 MsG0280008012.01.T01:CDS
TCAGTTGGGTTGGGATGCTA+TGG 0.506950 2:+24287107 MsG0280008012.01.T01:CDS
TGTACACCAATTCATAGGTT+GGG 0.507173 2:-24286678 None:intergenic
TATGATCCTTCGCTCCAGAC+TGG 0.512261 2:-24283351 None:intergenic
TTGGGACTATTTGATTGTTG+AGG 0.513592 2:-24286660 None:intergenic
AAACTTGCAGTAAGGAACAT+AGG 0.519839 2:-24282831 None:intergenic
AACTTCTCAGACCTTAAGAA+TGG 0.523239 2:-24287252 None:intergenic
GGGTCGCAGGGAAGTAGCCA+TGG 0.525873 2:-24286532 None:intergenic
TCCCTGCGACCCCACCAAAA+GGG 0.532744 2:+24286543 MsG0280008012.01.T01:CDS
TATTCCACAACTGAGGCTCT+TGG 0.536781 2:-24283374 None:intergenic
AACTCAAGCTTGCATACACC+AGG 0.537467 2:+24287343 MsG0280008012.01.T01:CDS
CGCCAGGGTTCTTACACACA+AGG 0.557000 2:-24286624 None:intergenic
ATACCTTTAAGAAATGGGGC+TGG 0.564816 2:+24283180 MsG0280008012.01.T01:CDS
ATTGCTTAGGGAACATACTC+GGG 0.568007 2:+24286831 MsG0280008012.01.T01:CDS
GTTGATGCCTTTAAGAAATG+GGG 0.573670 2:+24286985 MsG0280008012.01.T01:CDS
GTTGATACCTTTAAGAAATG+GGG 0.574983 2:+24283176 MsG0280008012.01.T01:CDS
CAGATTCTTGCAATCTGACA+AGG 0.575407 2:+24286699 MsG0280008012.01.T01:CDS
GTGGAATATCTTCTGAAGAG+AGG 0.579571 2:+24283389 MsG0280008012.01.T01:CDS
CATATTTATCCGAAACCCGA+TGG 0.584129 2:+24283144 MsG0280008012.01.T01:CDS
TGAAGGAATTAAAGGATTTG+GGG 0.584499 2:+24286884 MsG0280008012.01.T01:CDS
TGACAATCATGTCTTGTCCC+TGG 0.585106 2:-24287361 None:intergenic
ATCAAATTGTTGATTCAGAG+TGG 0.585441 2:+24282975 MsG0280008012.01.T01:CDS
GACACGAGACATGCTCAAGT+TGG 0.588113 2:+24286861 MsG0280008012.01.T01:CDS
AATTGCACAACAGTGGCTCG+TGG 0.602758 2:-24287183 None:intergenic
ATGCCTTTAAGAAATGGGGT+TGG 0.606718 2:+24286989 MsG0280008012.01.T01:CDS
GGCCATTGCTAAAACACCAA+GGG 0.609965 2:+24283319 MsG0280008012.01.T01:CDS
GTTGGGAGTTAGAGAAACCA+TGG 0.615746 2:-24286486 None:intergenic
CATCAACAACCAAAACCTTG+TGG 0.615914 2:+24286953 MsG0280008012.01.T01:CDS
AGACATGCTCAAGTTGGTGA+AGG 0.618045 2:+24286867 MsG0280008012.01.T01:CDS
GACAGGCAACTTGCCTGAGT+TGG 0.629550 2:+24283052 MsG0280008012.01.T01:CDS
CATACCAAGAGCCTCAGTTG+TGG 0.635286 2:+24283370 MsG0280008012.01.T01:CDS
ACTGAGAAAATTGATTGTGA+AGG 0.638960 2:-24283104 None:intergenic
TTTATTTGGAAGAAGTAGCG+TGG 0.642616 2:+24282944 MsG0280008012.01.T01:CDS
GGCTTACAGACAAGACGCCA+GGG 0.643701 2:-24286639 None:intergenic
ATCAACTTTCTCATTCCACA+AGG 0.645223 2:-24286968 None:intergenic
GAGAAGAAATTGCACAACAG+TGG 0.646434 2:-24287190 None:intergenic
AACCTTGTGTGTAAGAACCC+TGG 0.659854 2:+24286622 MsG0280008012.01.T01:CDS
ACTACGTCATATCATTCCCA+AGG 0.674810 2:+24286507 MsG0280008012.01.T01:CDS
CAGAAGATATTCCACAACTG+AGG 0.677963 2:-24283381 None:intergenic
TGGCCATTGCTAAAACACCA+AGG 0.690744 2:+24283318 MsG0280008012.01.T01:CDS
ATATCATTCCCAAGGCACCA+TGG 0.704378 2:+24286515 MsG0280008012.01.T01:CDS
AATATTGCAAGATTGCTTCG+GGG 0.721927 2:+24283011 MsG0280008012.01.T01:CDS
ATGGATGTTATCATACAGTG+AGG 0.724940 2:-24287048 None:intergenic
ACTCAAGCTTGCATACACCA+GGG 0.735651 2:+24287344 MsG0280008012.01.T01:CDS
ATGGATGTTAACATACACTG+AGG 0.775832 2:-24283239 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTCATATTTAAAATAAAG+AGG + Chr2:24285737-24285756 MsG0280008012.01.T01:intron 10.0%
!!! AATTCTTTATTTTTTATAAC+AGG - Chr2:24284855-24284874 None:intergenic 10.0%
!!! TAAATTTTTTATTTTTTGAG+AGG + Chr2:24285667-24285686 MsG0280008012.01.T01:intron 10.0%
!!! ATATGTTTCATTTGATTTAT+GGG + Chr2:24284453-24284472 MsG0280008012.01.T01:intron 15.0%
!!! CACTAAATTAATTTTATCTA+TGG - Chr2:24287070-24287089 None:intergenic 15.0%
!!! TTTAAATTATTTTAGGTCAT+AGG + Chr2:24284137-24284156 MsG0280008012.01.T01:intron 15.0%
!! AAACTTAATGACAAAATATC+AGG - Chr2:24287147-24287166 None:intergenic 20.0%
!! AAGATGAATGAATAGAATTA+AGG - Chr2:24286114-24286133 None:intergenic 20.0%
!! ATAAGTATTCATATCGAATA+AGG - Chr2:24283622-24283641 None:intergenic 20.0%
!! ATCAATGAAGTGAAAATAAA+TGG - Chr2:24286168-24286187 None:intergenic 20.0%
!! ATTAAATAACAATTAACTCC+AGG - Chr2:24284292-24284311 None:intergenic 20.0%
!! ATTAATTCGTTAATTGTTGT+GGG - Chr2:24285970-24285989 None:intergenic 20.0%
!! GCAAACAATATAAAGAAAAA+TGG + Chr2:24284345-24284364 MsG0280008012.01.T01:intron 20.0%
!! GTATTTATAAACCAATTCAT+AGG - Chr2:24282877-24282896 None:intergenic 20.0%
!! GTCATATAAAATACAAAACA+CGG - Chr2:24284192-24284211 None:intergenic 20.0%
!! TCTATGACATGTATATAAAT+CGG + Chr2:24283468-24283487 MsG0280008012.01.T01:CDS 20.0%
!! TGAAATATGAAAGATTGAAA+GGG - Chr2:24286143-24286162 None:intergenic 20.0%
!! TTATCTTATAAAGTTGTATC+AGG + Chr2:24287317-24287336 MsG0280008012.01.T01:CDS 20.0%
!! TTGAAATATGAAAGATTGAA+AGG - Chr2:24286144-24286163 None:intergenic 20.0%
!! TTTATATTGTTTGCATCTAA+AGG - Chr2:24284339-24284358 None:intergenic 20.0%
!!! AATATTAAGTTTTTCATGAC+AGG + Chr2:24283035-24283054 MsG0280008012.01.T01:CDS 20.0%
!!! AATCATTCAAAAACAACTTT+TGG + Chr2:24286910-24286929 MsG0280008012.01.T01:CDS 20.0%
!!! AGTCAGGTTTAAATTATTTT+AGG + Chr2:24284130-24284149 MsG0280008012.01.T01:intron 20.0%
!!! ATACTTATTTAGAACTTGAT+TGG + Chr2:24283634-24283653 MsG0280008012.01.T01:intron 20.0%
!!! ATTTCTAAATACTTTTCCTT+TGG + Chr2:24284646-24284665 MsG0280008012.01.T01:intron 20.0%
!!! GATATGTTTCATTTGATTTA+TGG + Chr2:24284452-24284471 MsG0280008012.01.T01:intron 20.0%
!!! TGATATTTTGTCATTAAGTT+TGG + Chr2:24287146-24287165 MsG0280008012.01.T01:CDS 20.0%
!!! TGATGAATCTTTTAAACTTT+TGG - Chr2:24285196-24285215 None:intergenic 20.0%
!!! TTGTTTTTTTTTTTGGGTAA+GGG - Chr2:24285935-24285954 None:intergenic 20.0%
!!! TTTCTTCATAAAGCTTTAAT+AGG - Chr2:24283514-24283533 None:intergenic 20.0%
!!! TTTGTTTTTTTTTTTGGGTA+AGG - Chr2:24285936-24285955 None:intergenic 20.0%
! AACAAAACAATGAACCTTAT+TGG - Chr2:24284746-24284765 None:intergenic 25.0%
! AACAGGATAATATATCTAAG+AGG - Chr2:24284838-24284857 None:intergenic 25.0%
! AATTGCAATCCAACTTTATT+TGG + Chr2:24282930-24282949 MsG0280008012.01.T01:CDS 25.0%
! ACAAATTCAACTATTACATC+AGG - Chr2:24283749-24283768 None:intergenic 25.0%
! CAAATCAAATAACTTTGTAG+AGG - Chr2:24284507-24284526 None:intergenic 25.0%
! CATAAAATCCTGATTCAAAA+CGG + Chr2:24283849-24283868 MsG0280008012.01.T01:intron 25.0%
! CATTAATTCGTTAATTGTTG+TGG - Chr2:24285971-24285990 None:intergenic 25.0%
! GAGAGAAAAAATTGAAACTT+TGG - Chr2:24286574-24286593 None:intergenic 25.0%
! GATTTGAGAAACACTTTAAT+TGG + Chr2:24284396-24284415 MsG0280008012.01.T01:intron 25.0%
! GCTTAATTTATCCATTCTTA+AGG + Chr2:24287241-24287260 MsG0280008012.01.T01:CDS 25.0%
! GGATAAGATATTCTTCTAAA+TGG - Chr2:24284777-24284796 None:intergenic 25.0%
! TAAATATTGCAAGATTGCTT+CGG + Chr2:24283009-24283028 MsG0280008012.01.T01:CDS 25.0%
! TATAAACCAATTCATAGGTT+GGG - Chr2:24282872-24282891 None:intergenic 25.0%
! TGAAAGAGTTAAAGGATTTA+GGG + Chr2:24283075-24283094 MsG0280008012.01.T01:CDS 25.0%
! TGTCATTAAGTTTGGAAAAA+AGG + Chr2:24287154-24287173 MsG0280008012.01.T01:CDS 25.0%
! TTATAAACCAATTCATAGGT+TGG - Chr2:24282873-24282892 None:intergenic 25.0%
! TTCACAAAAAGAACAAGATT+GGG + Chr2:24285293-24285312 MsG0280008012.01.T01:intron 25.0%
!! AGTTGATACCTTTAAGAAAT+GGG + Chr2:24283175-24283194 MsG0280008012.01.T01:CDS 25.0%
!! CATGTATATAAATCGGTTTA+AGG + Chr2:24283475-24283494 MsG0280008012.01.T01:intron 25.0%
!! TAATTTAGTGATGAGCTTTT+GGG + Chr2:24287080-24287099 MsG0280008012.01.T01:CDS 25.0%
!! TTAATTAACCATCTAGTTCA+GGG - Chr2:24285872-24285891 None:intergenic 25.0%
!! TTAATTTAGTGATGAGCTTT+TGG + Chr2:24287079-24287098 MsG0280008012.01.T01:CDS 25.0%
!! TTTAATTAACCATCTAGTTC+AGG - Chr2:24285873-24285892 None:intergenic 25.0%
!! TTTTTACTCTTTATGTGAAG+AGG + Chr2:24284925-24284944 MsG0280008012.01.T01:intron 25.0%
!!! AAGTTGATACCTTTAAGAAA+TGG + Chr2:24283174-24283193 MsG0280008012.01.T01:CDS 25.0%
!!! CACTGAGTTTATTTTATCAA+TGG - Chr2:24283261-24283280 None:intergenic 25.0%
!!! TATCAACTTTTTCATTCCAT+CGG - Chr2:24283163-24283182 None:intergenic 25.0%
!!! TTTCAATTTTTTCTCTCCAA+AGG + Chr2:24286577-24286596 MsG0280008012.01.T01:CDS 25.0%
AAAAGAGAAATGGGTAATGT+TGG - Chr2:24286300-24286319 None:intergenic 30.0%
AAAATTATTCTGTTGCACAC+AGG - Chr2:24284373-24284392 None:intergenic 30.0%
AAATATTGCAAGATTGCTTC+GGG + Chr2:24283010-24283029 MsG0280008012.01.T01:CDS 30.0%
AAATGGAGAGAAAAGAGAAA+TGG - Chr2:24286310-24286329 None:intergenic 30.0%
AACTCTCCTAACATTCATTT+GGG + Chr2:24285908-24285927 MsG0280008012.01.T01:intron 30.0%
AAGAAATTGAGAACTGAATC+AGG - Chr2:24286460-24286479 None:intergenic 30.0%
AATGGAGAGAAAAGAGAAAT+GGG - Chr2:24286309-24286328 None:intergenic 30.0%
ACATATGAACTCATTATTGC+AGG + Chr2:24284574-24284593 MsG0280008012.01.T01:intron 30.0%
ACTGAGAAAATTGATTGTGA+AGG - Chr2:24283107-24283126 None:intergenic 30.0%
AGAAATTGAGAACTGAATCA+GGG - Chr2:24286459-24286478 None:intergenic 30.0%
AGAACCTTAATCTATCTCAA+GGG + Chr2:24286226-24286245 MsG0280008012.01.T01:intron 30.0%
AGTACTCATGAATGGTTAAT+GGG + Chr2:24285831-24285850 MsG0280008012.01.T01:intron 30.0%
ATCGATGTTAATAGAACCAA+AGG - Chr2:24284665-24284684 None:intergenic 30.0%
ATGTTGTGCAAACATTACAT+TGG + Chr2:24285707-24285726 MsG0280008012.01.T01:intron 30.0%
ATGTTTCGTACTATTCCAAA+TGG + Chr2:24284544-24284563 MsG0280008012.01.T01:intron 30.0%
CACTTTAATTGGTTACGATA+AGG + Chr2:24284407-24284426 MsG0280008012.01.T01:intron 30.0%
CATGATATGATTGAATTCTC+AGG + Chr2:24283568-24283587 MsG0280008012.01.T01:intron 30.0%
CTACTTCTTCCAAATAAAGT+TGG - Chr2:24282942-24282961 None:intergenic 30.0%
CTATATTATGTACTGAACAG+TGG + Chr2:24284211-24284230 MsG0280008012.01.T01:intron 30.0%
GTGAAAGAGTTAAAGGATTT+AGG + Chr2:24283074-24283093 MsG0280008012.01.T01:CDS 30.0%
GTGAAGGAATTAAAGGATTT+GGG + Chr2:24286883-24286902 MsG0280008012.01.T01:CDS 30.0%
GTGCAATTTCTTCTCAATAA+TGG + Chr2:24287198-24287217 MsG0280008012.01.T01:CDS 30.0%
GTTCACAAAAAGAACAAGAT+TGG + Chr2:24285292-24285311 MsG0280008012.01.T01:intron 30.0%
TAACTCTCCTAACATTCATT+TGG + Chr2:24285907-24285926 MsG0280008012.01.T01:intron 30.0%
TAATCCCTTGAGATAGATTA+AGG - Chr2:24286233-24286252 None:intergenic 30.0%
TAGTACTCATGAATGGTTAA+TGG + Chr2:24285830-24285849 MsG0280008012.01.T01:intron 30.0%
TATTAACATCGATGTTCCAA+GGG + Chr2:24284672-24284691 MsG0280008012.01.T01:intron 30.0%
TCACAAAAAGAACAAGATTG+GGG + Chr2:24285294-24285313 MsG0280008012.01.T01:intron 30.0%
TGAAGGAATTAAAGGATTTG+GGG + Chr2:24286884-24286903 MsG0280008012.01.T01:CDS 30.0%
TGAATTTGTCTTGCACTTAT+GGG + Chr2:24283760-24283779 MsG0280008012.01.T01:intron 30.0%
TGTTGTGCAAACATTACATT+GGG + Chr2:24285708-24285727 MsG0280008012.01.T01:intron 30.0%
TTGAATTTGTCTTGCACTTA+TGG + Chr2:24283759-24283778 MsG0280008012.01.T01:intron 30.0%
! AGAGAAAAAGTACATCTAAG+AGG - Chr2:24284801-24284820 None:intergenic 30.0%
! AGTTGATGCCTTTAAGAAAT+GGG + Chr2:24286984-24287003 MsG0280008012.01.T01:CDS 30.0%
! CTCAATTTCTTTAGAAACCA+TGG + Chr2:24286469-24286488 MsG0280008012.01.T01:intron 30.0%
! GGTTTCGGATAAATATGTTT+TGG - Chr2:24283141-24283160 None:intergenic 30.0%
! GTATATAAATCGGTTTAAGG+AGG + Chr2:24283478-24283497 MsG0280008012.01.T01:intron 30.0%
! GTATTCTTTTTACAGACCAA+AGG + Chr2:24284954-24284973 MsG0280008012.01.T01:intron 30.0%
! GTTGATACCTTTAAGAAATG+GGG + Chr2:24283176-24283195 MsG0280008012.01.T01:CDS 30.0%
! TCATACCTCATTCACAATTT+TGG + Chr2:24286367-24286386 MsG0280008012.01.T01:intron 30.0%
! TCCACAATTATTTTCCCTTT+CGG - Chr2:24283891-24283910 None:intergenic 30.0%
! TGACAAAATATCAGGTGTTT+TGG - Chr2:24287139-24287158 None:intergenic 30.0%
! TGATGATGATGATACTCTTT+CGG - Chr2:24285002-24285021 None:intergenic 30.0%
! TGTTCAAGTTCAACAATACA+TGG + Chr2:24286197-24286216 MsG0280008012.01.T01:intron 30.0%
!! AAGTTGATGCCTTTAAGAAA+TGG + Chr2:24286983-24287002 MsG0280008012.01.T01:CDS 30.0%
!! ACTTTTTCTCTTTTCCGTTT+AGG + Chr2:24284810-24284829 MsG0280008012.01.T01:intron 30.0%
!! ATCAAATTGTTGATTCAGAG+TGG + Chr2:24282975-24282994 MsG0280008012.01.T01:CDS 30.0%
!! CGTTTGATTTTGTCACAATA+TGG + Chr2:24284061-24284080 MsG0280008012.01.T01:intron 30.0%
!! GTTGAATGATGAGTTCTAAA+TGG + Chr2:24285054-24285073 MsG0280008012.01.T01:intron 30.0%
!!! ATCAACTTTTTCATTCCATC+GGG - Chr2:24283162-24283181 None:intergenic 30.0%
!!! TCATATGTTTTAGTGCCATT+TGG - Chr2:24284562-24284581 None:intergenic 30.0%
AAAATAGCGACTTCATGGTA+AGG - Chr2:24286068-24286087 None:intergenic 35.0%
AAACTAACATTCGTGCAAGT+AGG - Chr2:24283697-24283716 None:intergenic 35.0%
AAAGTTTGGAAGCAGATTGT+GGG - Chr2:24286399-24286418 None:intergenic 35.0%
AACTTCTCAGACCTTAAGAA+TGG - Chr2:24287255-24287274 None:intergenic 35.0%
AATAGTCCCAACCTATGAAT+TGG + Chr2:24282863-24282882 MsG0280008012.01.T01:CDS 35.0%
AATATTGCAAGATTGCTTCG+GGG + Chr2:24283011-24283030 MsG0280008012.01.T01:CDS 35.0%
AATGGGTAATGTTGGAAAAG+AGG - Chr2:24286292-24286311 None:intergenic 35.0%
AATGTTGGAAAAGAGGGTTA+GGG - Chr2:24286285-24286304 None:intergenic 35.0%
ACACTTTGCAGTTAGCATTA+TGG + Chr2:24284018-24284037 MsG0280008012.01.T01:intron 35.0%
ACCGAAAGGGAAAATAATTG+TGG + Chr2:24283887-24283906 MsG0280008012.01.T01:intron 35.0%
AGCTACATAAAATCTTCCCT+TGG - Chr2:24284691-24284710 None:intergenic 35.0%
AGCTGCGAAAATTTCTTTCA+AGG - Chr2:24284889-24284908 None:intergenic 35.0%
AGGATCATGATGACAGATAA+AGG - Chr2:24283602-24283621 None:intergenic 35.0%
ATATCTAAGAGGCTCCTAAA+CGG - Chr2:24284827-24284846 None:intergenic 35.0%
ATCAACTTTCTCATTCCACA+AGG - Chr2:24286971-24286990 None:intergenic 35.0%
ATGGATGTTAACATACACTG+AGG - Chr2:24283242-24283261 None:intergenic 35.0%
ATGGATGTTATCATACAGTG+AGG - Chr2:24287051-24287070 None:intergenic 35.0%
ATGGGTAATGTTGGAAAAGA+GGG - Chr2:24286291-24286310 None:intergenic 35.0%
ATTGAATCTTGCACAAACCA+AGG + Chr2:24283535-24283554 MsG0280008012.01.T01:intron 35.0%
CACACATAGTAAGAGATCAA+AGG - Chr2:24284315-24284334 None:intergenic 35.0%
CAGAACCTTAATCTATCTCA+AGG + Chr2:24286225-24286244 MsG0280008012.01.T01:intron 35.0%
CTATTAACATCGATGTTCCA+AGG + Chr2:24284671-24284690 MsG0280008012.01.T01:intron 35.0%
CTTTGATCTCTTACTATGTG+TGG + Chr2:24284313-24284332 MsG0280008012.01.T01:intron 35.0%
GAAGAGAGGTTTGCATAAAA+AGG + Chr2:24283403-24283422 MsG0280008012.01.T01:CDS 35.0%
GAATCTGTACACCAATTCAT+AGG - Chr2:24286686-24286705 None:intergenic 35.0%
GGTGAAGGAATTAAAGGATT+TGG + Chr2:24286882-24286901 MsG0280008012.01.T01:CDS 35.0%
GTACTCATGAATGGTTAATG+GGG + Chr2:24285832-24285851 MsG0280008012.01.T01:intron 35.0%
GTCTCATCAGTGACTATAAA+CGG - Chr2:24283446-24283465 None:intergenic 35.0%
TAAATCATAAGCGTTCCTGA+GGG - Chr2:24284611-24284630 None:intergenic 35.0%
TAATGTTGGAAAAGAGGGTT+AGG - Chr2:24286286-24286305 None:intergenic 35.0%
TAGCATTATGGCATAGTCTT+TGG + Chr2:24284030-24284049 MsG0280008012.01.T01:intron 35.0%
TATGAGCGCTCACATATATA+GGG - Chr2:24285585-24285604 None:intergenic 35.0%
TCAGAAAAATAGCGACTTCA+TGG - Chr2:24286073-24286092 None:intergenic 35.0%
TGAGATAGATTAAGGTTCTG+TGG - Chr2:24286225-24286244 None:intergenic 35.0%
TGAGATGTCTTGAACCAATA+AGG + Chr2:24284729-24284748 MsG0280008012.01.T01:intron 35.0%
TGTACACCAATTCATAGGTT+GGG - Chr2:24286681-24286700 None:intergenic 35.0%
TTGGGACTATTTGATTGTTG+AGG - Chr2:24286663-24286682 None:intergenic 35.0%
TTTAACTCTTTCACCAACTC+AGG - Chr2:24283068-24283087 None:intergenic 35.0%
TTTATTTGGAAGAAGTAGCG+TGG + Chr2:24282944-24282963 MsG0280008012.01.T01:CDS 35.0%
! AAACTCAGTGATGAGCTTTT+GGG + Chr2:24283271-24283290 MsG0280008012.01.T01:CDS 35.0%
! AAAGAAATTTTCGCAGCTAC+TGG + Chr2:24284891-24284910 MsG0280008012.01.T01:intron 35.0%
! AAGAAATTTTCGCAGCTACT+GGG + Chr2:24284892-24284911 MsG0280008012.01.T01:intron 35.0%
! ACTTCTGTTTTACACTATGC+TGG - Chr2:24285384-24285403 None:intergenic 35.0%
! ATCACAATGCTGATTGAGAA+TGG + Chr2:24286784-24286803 MsG0280008012.01.T01:CDS 35.0%
! CTCTTTCTAGTACTCATGAA+TGG + Chr2:24285823-24285842 MsG0280008012.01.T01:intron 35.0%
! GAAAAAGTACATCTAAGAGG+TGG - Chr2:24284798-24284817 None:intergenic 35.0%
! GCAATCTGACAAGGAAATTT+TGG + Chr2:24286708-24286727 MsG0280008012.01.T01:CDS 35.0%
! GTTGATGCCTTTAAGAAATG+GGG + Chr2:24286985-24287004 MsG0280008012.01.T01:CDS 35.0%
! GTTTAGGGATTGCGATTTTT+GGG - Chr2:24286263-24286282 None:intergenic 35.0%
! TAAACTCAGTGATGAGCTTT+TGG + Chr2:24283270-24283289 MsG0280008012.01.T01:CDS 35.0%
! TAACCTGGAAGAATTTTTCC+TGG + Chr2:24284271-24284290 MsG0280008012.01.T01:intron 35.0%
! TTTAGGGATTGCGATTTTTG+GGG - Chr2:24286262-24286281 None:intergenic 35.0%
! TTTCTCATTCCACAAGGTTT+TGG - Chr2:24286965-24286984 None:intergenic 35.0%
! TTTTTCATTCCATCGGGTTT+CGG - Chr2:24283156-24283175 None:intergenic 35.0%
!! ACAACCTTGCTGACTTAATA+CGG - Chr2:24283980-24283999 None:intergenic 35.0%
!! CAAGTTGGTGAAGGAATTAA+AGG + Chr2:24286876-24286895 MsG0280008012.01.T01:CDS 35.0%
!! TGAGTTGGTGAAAGAGTTAA+AGG + Chr2:24283067-24283086 MsG0280008012.01.T01:CDS 35.0%
!! TGTTTTACACTATGCTGGTT+TGG - Chr2:24285379-24285398 None:intergenic 35.0%
!!! AATATCAGGTGTTTTGGCAA+TGG - Chr2:24287133-24287152 None:intergenic 35.0%
!!! GGGAATGGATACTTTTTTTC+TGG + Chr2:24283780-24283799 MsG0280008012.01.T01:intron 35.0%
!!! GTCGCTATTTTTCTGATTCA+AGG + Chr2:24286077-24286096 MsG0280008012.01.T01:intron 35.0%
!!! TATCATGCCAGTTTTTTCCT+TGG - Chr2:24283555-24283574 None:intergenic 35.0%
AAAAATCCGTGAACTCTACC+AGG - Chr2:24285127-24285146 None:intergenic 40.0%
AAGGGACCCAAATGAATGTT+AGG - Chr2:24285917-24285936 None:intergenic 40.0%
ACTACGTCATATCATTCCCA+AGG + Chr2:24286507-24286526 MsG0280008012.01.T01:CDS 40.0%
ACTCCAGGAAAAATTCTTCC+AGG - Chr2:24284277-24284296 None:intergenic 40.0%
CAAAGTTTGGAAGCAGATTG+TGG - Chr2:24286400-24286419 None:intergenic 40.0%
CAGAAGATATTCCACAACTG+AGG - Chr2:24283384-24283403 None:intergenic 40.0%
CAGATTCTTGCAATCTGACA+AGG + Chr2:24286699-24286718 MsG0280008012.01.T01:CDS 40.0%
CATATTTATCCGAAACCCGA+TGG + Chr2:24283144-24283163 MsG0280008012.01.T01:CDS 40.0%
CATCAACAACCAAAACCTTG+TGG + Chr2:24286953-24286972 MsG0280008012.01.T01:CDS 40.0%
CCTGATTCAAAACGGTTTCA+AGG + Chr2:24283857-24283876 MsG0280008012.01.T01:intron 40.0%
CTAAATCATAAGCGTTCCTG+AGG - Chr2:24284612-24284631 None:intergenic 40.0%
CTGTACACCAATTCATAGGT+TGG - Chr2:24286682-24286701 None:intergenic 40.0%
CTTGTAACTGGAGCAAAGTT+TGG - Chr2:24286413-24286432 None:intergenic 40.0%
GAAAAGAGGGTTAGGGTTTA+GGG - Chr2:24286278-24286297 None:intergenic 40.0%
GAGAAGAAATTGCACAACAG+TGG - Chr2:24287193-24287212 None:intergenic 40.0%
GCACAAACCAAGGAAAAAAC+TGG + Chr2:24283545-24283564 MsG0280008012.01.T01:intron 40.0%
GGGAATGATATGACGTAGTT+GGG - Chr2:24286506-24286525 None:intergenic 40.0%
GGTTTGGACTTCAATTGGTA+TGG - Chr2:24285363-24285382 None:intergenic 40.0%
GTATGAGCGCTCACATATAT+AGG - Chr2:24285586-24285605 None:intergenic 40.0%
GTATTAAGTCAGCAAGGTTG+TGG + Chr2:24283979-24283998 MsG0280008012.01.T01:intron 40.0%
TCTTGTCCAAACTTGCAGTA+AGG - Chr2:24282842-24282861 None:intergenic 40.0%
TGGGAATGATATGACGTAGT+TGG - Chr2:24286507-24286526 None:intergenic 40.0%
TTGTCGTGTCTGCTTCAAAA+CGG + Chr2:24285170-24285189 MsG0280008012.01.T01:intron 40.0%
TTGTCTTGCACTTATGGGAA+TGG + Chr2:24283765-24283784 MsG0280008012.01.T01:intron 40.0%
TTGTGAATGAGGTATGAGAC+AGG - Chr2:24286364-24286383 None:intergenic 40.0%
! AAACTTTGGCAACACCCTTT+TGG - Chr2:24286560-24286579 None:intergenic 40.0%
! ATACCTTTAAGAAATGGGGC+TGG + Chr2:24283180-24283199 MsG0280008012.01.T01:CDS 40.0%
! ATGCCTTTAAGAAATGGGGT+TGG + Chr2:24286989-24287008 MsG0280008012.01.T01:CDS 40.0%
! ATTAACCATCTAGTTCAGGG+AGG - Chr2:24285869-24285888 None:intergenic 40.0%
! CTAAAACACCAAGGGTTTTG+GGG + Chr2:24283327-24283346 MsG0280008012.01.T01:CDS 40.0%
! GCTAAAACACCAAGGGTTTT+GGG + Chr2:24283326-24283345 MsG0280008012.01.T01:CDS 40.0%
! GGTTTAGGGATTGCGATTTT+TGG - Chr2:24286264-24286283 None:intergenic 40.0%
! GTGGAATATCTTCTGAAGAG+AGG + Chr2:24283389-24283408 MsG0280008012.01.T01:CDS 40.0%
! TGAGAACTGAATCAGGGTTT+TGG - Chr2:24286453-24286472 None:intergenic 40.0%
! TGCTAAAACACCAAGGGTTT+TGG + Chr2:24283325-24283344 MsG0280008012.01.T01:CDS 40.0%
! TTTTTCCTCCCTGAACTAGA+TGG + Chr2:24285861-24285880 MsG0280008012.01.T01:intron 40.0%
!! AGCTTTTGGGTCAATCAGTT+GGG + Chr2:24283284-24283303 MsG0280008012.01.T01:CDS 40.0%
!! ATGCTGGTTTGGACTTCAAT+TGG - Chr2:24285368-24285387 None:intergenic 40.0%
!! CCTTGAAACCGTTTTGAATC+AGG - Chr2:24283860-24283879 None:intergenic 40.0%
!! GGTTTTGGTGAGTCTTGAAA+CGG - Chr2:24286438-24286457 None:intergenic 40.0%
!! TAAAACACCAAGGGTTTTGG+GGG + Chr2:24283328-24283347 MsG0280008012.01.T01:CDS 40.0%
!! TTAGGGATTGCGATTTTTGG+GGG - Chr2:24286261-24286280 None:intergenic 40.0%
!!! AACCCTTGGTGTTTTAGCAA+TGG - Chr2:24283324-24283343 None:intergenic 40.0%
AACCTTGTGTGTAAGAACCC+TGG + Chr2:24286622-24286641 MsG0280008012.01.T01:CDS 45.0%
AACTCAAGCTTGCATACACC+AGG + Chr2:24287343-24287362 MsG0280008012.01.T01:CDS 45.0%
ACTCAAGCTTGCATACACCA+GGG + Chr2:24287344-24287363 MsG0280008012.01.T01:CDS 45.0%
ACTGATATGGACATGGAGTC+AGG + Chr2:24284114-24284133 MsG0280008012.01.T01:intron 45.0%
AGACCAGCCCCATTTCTTAA+AGG - Chr2:24283186-24283205 None:intergenic 45.0%
AGCTCCGTATTAAGTCAGCA+AGG + Chr2:24283973-24283992 MsG0280008012.01.T01:intron 45.0%
ATAGCGACTTCATGGTAAGG+TGG - Chr2:24286065-24286084 None:intergenic 45.0%
ATGAAAGTAGACGACGACGA+TGG - Chr2:24285028-24285047 None:intergenic 45.0%
ATGTCCATATCAGTTGACCC+AGG - Chr2:24284108-24284127 None:intergenic 45.0%
ATTATGTTGTGTCCGACCTG+AGG + Chr2:24285329-24285348 MsG0280008012.01.T01:intron 45.0%
CAGGTCGGACACAACATAAT+TGG - Chr2:24285329-24285348 None:intergenic 45.0%
CGACCAACCCCATTTCTTAA+AGG - Chr2:24286995-24287014 None:intergenic 45.0%
CGAGGCCAAAATTGTGAATG+AGG - Chr2:24286375-24286394 None:intergenic 45.0%
CTTGAAACGGAGCTTGTAAC+TGG - Chr2:24286425-24286444 None:intergenic 45.0%
GAGGTATGAGACAGGAAAAG+AGG - Chr2:24286356-24286375 None:intergenic 45.0%
GGAAAAGAGGGTTAGGGTTT+AGG - Chr2:24286279-24286298 None:intergenic 45.0%
GGCCATTGCTAAAACACCAA+GGG + Chr2:24283319-24283338 MsG0280008012.01.T01:CDS 45.0%
GTCAAACAAACAGCAGCCTT+TGG - Chr2:24284973-24284992 None:intergenic 45.0%
GTTGGGAGTTAGAGAAACCA+TGG - Chr2:24286489-24286508 None:intergenic 45.0%
TATTCCACAACTGAGGCTCT+TGG - Chr2:24283377-24283396 None:intergenic 45.0%
TCAAGGAGCAGTAACCGAAA+GGG + Chr2:24283874-24283893 MsG0280008012.01.T01:intron 45.0%
TGCTTCTGATCTTTACCCCT+GGG + Chr2:24284088-24284107 MsG0280008012.01.T01:intron 45.0%
TGGCCATTGCTAAAACACCA+AGG + Chr2:24283318-24283337 MsG0280008012.01.T01:CDS 45.0%
TGGGTCAACTGATATGGACA+TGG + Chr2:24284107-24284126 MsG0280008012.01.T01:intron 45.0%
TGTCCATATCAGTTGACCCA+GGG - Chr2:24284107-24284126 None:intergenic 45.0%
TTCAAGGAGCAGTAACCGAA+AGG + Chr2:24283873-24283892 MsG0280008012.01.T01:intron 45.0%
TTGGGTCAATCAGTTGGGTT+GGG + Chr2:24283289-24283308 MsG0280008012.01.T01:CDS 45.0%
TTTGGGTCAATCAGTTGGGT+TGG + Chr2:24283288-24283307 MsG0280008012.01.T01:CDS 45.0%
! AGAGGTTGAATCAGAAGCGT+TGG - Chr2:24286338-24286357 None:intergenic 45.0%
! ATATCATTCCCAAGGCACCA+TGG + Chr2:24286515-24286534 MsG0280008012.01.T01:CDS 45.0%
! CTTGAACAACTTGTTCCAGC+TGG + Chr2:24284239-24284258 MsG0280008012.01.T01:intron 45.0%
! TTTGGCAACACCCTTTTGGT+GGG - Chr2:24286556-24286575 None:intergenic 45.0%
!! AGACATGCTCAAGTTGGTGA+AGG + Chr2:24286867-24286886 MsG0280008012.01.T01:CDS 45.0%
!! GAGCTTTTGGGTCAATCAGT+TGG + Chr2:24283283-24283302 MsG0280008012.01.T01:CDS 45.0%
!! AAAAAAAAAACAAAAATATT+TGG + Chr2:24285942-24285961 MsG0280008012.01.T01:intron 5.0%
!! AAAAAAAAACAAAAATATTT+GGG + Chr2:24285943-24285962 MsG0280008012.01.T01:intron 5.0%
!!! AATATTTTTGTTTTTTTTTT+TGG - Chr2:24285942-24285961 None:intergenic 5.0%
!!! ATATTTTTGTTTTTTTTTTT+GGG - Chr2:24285941-24285960 None:intergenic 5.0%
AAAGTAGACGACGACGATGG+TGG - Chr2:24285025-24285044 None:intergenic 50.0%
AATCCGTGAACTCTACCAGG+CGG - Chr2:24285124-24285143 None:intergenic 50.0%
AATTGCACAACAGTGGCTCG+TGG - Chr2:24287186-24287205 None:intergenic 50.0%
AGCTGGACACACGAATAACC+TGG + Chr2:24284256-24284275 MsG0280008012.01.T01:intron 50.0%
AGGTTATTCGTGTGTCCAGC+TGG - Chr2:24284257-24284276 None:intergenic 50.0%
ATGGATGCACTTCCTCAGGT+CGG - Chr2:24285344-24285363 None:intergenic 50.0%
CATACCAAGAGCCTCAGTTG+TGG + Chr2:24283370-24283389 MsG0280008012.01.T01:CDS 50.0%
CTGCTTCTGATCTTTACCCC+TGG + Chr2:24284087-24284106 MsG0280008012.01.T01:intron 50.0%
GACACGAGACATGCTCAAGT+TGG + Chr2:24286861-24286880 MsG0280008012.01.T01:CDS 50.0%
GTCCATATCAGTTGACCCAG+GGG - Chr2:24284106-24284125 None:intergenic 50.0%
TACCCCTGGGTCAACTGATA+TGG + Chr2:24284101-24284120 MsG0280008012.01.T01:intron 50.0%
TATGATCCTTCGCTCCAGAC+TGG - Chr2:24283354-24283373 None:intergenic 50.0%
TGGTATGGATGCACTTCCTC+AGG - Chr2:24285348-24285367 None:intergenic 50.0%
TTCATGGTAAGGTGGCTTCG+CGG - Chr2:24286057-24286076 None:intergenic 50.0%
! CAGGTTGACACAATTCCCTC+AGG + Chr2:24284593-24284612 MsG0280008012.01.T01:intron 50.0%
! CTTTGGCAACACCCTTTTGG+TGG - Chr2:24286557-24286576 None:intergenic 50.0%
! TTGGCAACACCCTTTTGGTG+GGG - Chr2:24286555-24286574 None:intergenic 50.0%
!! CAGAAGCGTTGGTGCAGAAA+TGG - Chr2:24286327-24286346 None:intergenic 50.0%
!! GTCAGAAGTAGAAGCGCCTT+TGG - Chr2:24286596-24286615 None:intergenic 50.0%
!! TCAGTTGGGTTGGGATGCTA+TGG + Chr2:24283298-24283317 MsG0280008012.01.T01:CDS 50.0%
AGGCTTACAGACAAGACGCC+AGG - Chr2:24286643-24286662 None:intergenic 55.0%
CGCCAGGGTTCTTACACACA+AGG - Chr2:24286627-24286646 None:intergenic 55.0%
GACAGGCAACTTGCCTGAGT+TGG + Chr2:24283052-24283071 MsG0280008012.01.T01:CDS 55.0%
GGAAGTAGCCATGGTGCCTT+GGG - Chr2:24286526-24286545 None:intergenic 55.0%
GGCTTACAGACAAGACGCCA+GGG - Chr2:24286642-24286661 None:intergenic 55.0%
TATGACATGCTTGTGCCGCC+TGG + Chr2:24285106-24285125 MsG0280008012.01.T01:intron 55.0%
TGGAAGCAGATTGTGGGTCG+AGG - Chr2:24286393-24286412 None:intergenic 55.0%
ATGGTAAGGTGGCTTCGCGG+CGG - Chr2:24286054-24286073 None:intergenic 60.0%
GGGAAGTAGCCATGGTGCCT+TGG - Chr2:24286527-24286546 None:intergenic 60.0%
GTGCCGCCTGGTAGAGTTCA+CGG + Chr2:24285118-24285137 MsG0280008012.01.T01:intron 60.0%
TCCCTGCGACCCCACCAAAA+GGG + Chr2:24286543-24286562 MsG0280008012.01.T01:CDS 60.0%
TTCCCTGCGACCCCACCAAA+AGG + Chr2:24286542-24286561 MsG0280008012.01.T01:CDS 60.0%
! ACCCTTTTGGTGGGGTCGCA+GGG - Chr2:24286547-24286566 None:intergenic 60.0%
! AGACTGGCCCCCAAAACCCT+TGG - Chr2:24283338-24283357 None:intergenic 60.0%
!!! AAGGGTTTTGGGGGCCAGTC+TGG + Chr2:24283337-24283356 MsG0280008012.01.T01:CDS 60.0%
GGGTCGCAGGGAAGTAGCCA+TGG - Chr2:24286535-24286554 None:intergenic 65.0%
! CACCCTTTTGGTGGGGTCGC+AGG - Chr2:24286548-24286567 None:intergenic 65.0%
!! GCGGCGGTGCTACGTAACTG+CGG - Chr2:24286038-24286057 None:intergenic 65.0%
! TGGGGGCCAGTCTGGAGCGA+AGG + Chr2:24283345-24283364 MsG0280008012.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 24282834 24287377 24282834 ID=MsG0280008012.01;Name=MsG0280008012.01
Chr2 mRNA 24282834 24287377 24282834 ID=MsG0280008012.01.T01;Parent=MsG0280008012.01;Name=MsG0280008012.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|0|0|2|0|516
Chr2 exon 24282834 24283489 24282834 ID=MsG0280008012.01.T01:exon:13951;Parent=MsG0280008012.01.T01
Chr2 exon 24286483 24287377 24286483 ID=MsG0280008012.01.T01:exon:13952;Parent=MsG0280008012.01.T01
Chr2 CDS 24282834 24283489 24282834 ID=MsG0280008012.01.T01:cds;Parent=MsG0280008012.01.T01
Chr2 CDS 24286483 24287377 24286483 ID=MsG0280008012.01.T01:cds;Parent=MsG0280008012.01.T01
Gene Sequence

>MsG0280008012.01.T01

ATGTTCCTTACTGCAAGTTTGGACAAGAAAATAGTCCCAACCTATGAATTGGTTTATAAATACTTGCAATCTGATAAACACATTCTTGCTTTGTTGAATTGCAATCCAACTTTATTTGGAAGAAGTAGCGTGGAACATAACATCAAATTGTTGATTCAGAGTGGAGTGACAGACATAAATATTGCAAGATTGCTTCGGGGCAATATTAAGTTTTTCATGACAGGCAACTTGCCTGAGTTGGTGAAAGAGTTAAAGGATTTAGGGTTTCATCCTTCACAATCAATTTTCTCAGTAGCATTGATTGCCAAAACATATTTATCCGAAACCCGATGGAATGAAAAAGTTGATACCTTTAAGAAATGGGGCTGGTCTGATGAAGATGTTCTTGAAGCATTTAAAAAGCAACCTCAGTGTATGTTAACATCCATTGATAAAATAAACTCAGTGATGAGCTTTTGGGTCAATCAGTTGGGTTGGGATGCTATGGCCATTGCTAAAACACCAAGGGTTTTGGGGGCCAGTCTGGAGCGAAGGATCATACCAAGAGCCTCAGTTGTGGAATATCTTCTGAAGAGAGGTTTGCATAAAAAGGAAGCAAGTTTAACTTCTCCGTTTATAGTCACTGATGAGACATTCTATGACATGTATATAAATCGAAACCATGGTTTCTCTAACTCCCAACTACGTCATATCATTCCCAAGGCACCATGGCTACTTCCCTGCGACCCCACCAAAAGGGTGTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGCGCTTCTACTTCTGACATTGTTAACCTTGTGTGTAAGAACCCTGGCGTCTTGTCTGTAAGCCTCAACAATCAAATAGTCCCAACCTATGAATTGGTGTACAGATTCTTGCAATCTGACAAGGAAATTTTGGCATTGTTGAATTACAATACAAATTTACTTTGTGATCGTACTGTGCGTAATAACATCACAATGCTGATTGAGAATGGAGTGTCCCACTCAAACATTAAAAGATTGCTTAGGGAACATACTCGGGCATTCAAGACACGAGACATGCTCAAGTTGGTGAAGGAATTAAAGGATTTGGGGTTTAATCATTCAAAAACAACTTTTGGAGTAGCATTGATAGCAAAATCATCAACAACCAAAACCTTGTGGAATGAGAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCGAATGAAGATGTTCTTCAAGCATTTAGAAAGCAGCCTCACTGTATGATAACATCCATAGATAAAATTAATTTAGTGATGAGCTTTTGGGTCAATCAGTTGGGTTGGGATGCTATGGCCATTGCCAAAACACCTGATATTTTGTCATTAAGTTTGGAAAAAAGGATCATTCCACGAGCCACTGTTGTGCAATTTCTTCTCAATAATGGTTTGCGAAGTAAGAATTCAAGCTTAATTTATCCATTCTTAAGGTCTGAGAAGTTGTTTCTTGATATGTTTATAAAACGTTTTAAGAATGAGTCTTCTTATCTTATAAAGTTGTATCAGGAAAAACTCAAGCTTGCATACACCAGGGACAAGACATGA
Protein sequence

>MsG0280008012.01.T01

MFLTASLDKKIVPTYELVYKYLQSDKHILALLNCNPTLFGRSSVEHNIKLLIQSGVTDINIARLLRGNIKFFMTGNLPELVKELKDLGFHPSQSIFSVALIAKTYLSETRWNEKVDTFKKWGWSDEDVLEAFKKQPQCMLTSIDKINSVMSFWVNQLGWDAMAIAKTPRVLGASLERRIIPRASVVEYLLKRGLHKKEASLTSPFIVTDETFYDMYINRNHGFSNSQLRHIIPKAPWLLPCDPTKRVLPKFQFFLSKGASTSDIVNLVCKNPGVLSVSLNNQIVPTYELVYRFLQSDKEILALLNYNTNLLCDRTVRNNITMLIENGVSHSNIKRLLREHTRAFKTRDMLKLVKELKDLGFNHSKTTFGVALIAKSSTTKTLWNEKVDAFKKWGWSNEDVLQAFRKQPHCMITSIDKINLVMSFWVNQLGWDAMAIAKTPDILSLSLEKRIIPRATVVQFLLNNGLRSKNSSLIYPFLRSEKLFLDMFIKRFKNESSYLIKLYQEKLKLAYTRDKT*