Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008026.01.T01 | XP_039686380.1 | 93.909 | 394 | 23 | 1 | 1 | 394 | 1 | 393 | 0 | 766 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008026.01.T01 | A0A072V7I7 | 93.909 | 394 | 23 | 1 | 1 | 394 | 1 | 393 | 0.0 | 766 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0280008026.01.T01 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008026.01.T01 | MTR_2g437260 | 93.909 | 394 | 23 | 1 | 1 | 394 | 1 | 393 | 0.0 | 766 |
| MsG0280008026.01.T01 | MTR_2g437240 | 50.000 | 412 | 161 | 5 | 1 | 374 | 1 | 405 | 9.55e-134 | 389 |
| MsG0280008026.01.T01 | MTR_2g437200 | 50.495 | 404 | 155 | 5 | 1 | 366 | 1 | 397 | 4.18e-132 | 385 |
| MsG0280008026.01.T01 | MTR_2g438020 | 48.276 | 377 | 155 | 4 | 36 | 374 | 70 | 444 | 1.48e-117 | 351 |
| MsG0280008026.01.T01 | MTR_2g437020 | 47.467 | 375 | 192 | 3 | 1 | 371 | 1 | 374 | 3.25e-117 | 346 |
| MsG0280008026.01.T01 | MTR_2g437060 | 47.414 | 348 | 179 | 3 | 31 | 376 | 49 | 394 | 2.57e-113 | 337 |
| MsG0280008026.01.T01 | MTR_2g437130 | 46.197 | 355 | 184 | 2 | 34 | 388 | 40 | 387 | 7.09e-112 | 333 |
| MsG0280008026.01.T01 | MTR_2g437160 | 47.863 | 351 | 175 | 4 | 27 | 371 | 51 | 399 | 1.78e-110 | 330 |
| MsG0280008026.01.T01 | MTR_2g437120 | 49.153 | 354 | 170 | 7 | 23 | 371 | 39 | 387 | 1.78e-110 | 330 |
| MsG0280008026.01.T01 | MTR_2g437080 | 46.023 | 352 | 184 | 3 | 25 | 374 | 30 | 377 | 2.30e-110 | 328 |
| MsG0280008026.01.T01 | MTR_2g437040 | 46.705 | 349 | 182 | 2 | 30 | 376 | 33 | 379 | 3.28e-110 | 328 |
| MsG0280008026.01.T01 | MTR_2g436460 | 47.353 | 340 | 176 | 2 | 30 | 368 | 40 | 377 | 6.45e-110 | 327 |
| MsG0280008026.01.T01 | MTR_2g437170 | 47.368 | 361 | 179 | 6 | 23 | 374 | 39 | 397 | 1.29e-109 | 328 |
| MsG0280008026.01.T01 | MTR_2g437150 | 47.207 | 358 | 178 | 6 | 23 | 371 | 39 | 394 | 3.77e-109 | 326 |
| MsG0280008026.01.T01 | MTR_2g437030 | 47.230 | 343 | 177 | 3 | 31 | 371 | 120 | 460 | 4.27e-108 | 326 |
| MsG0280008026.01.T01 | MTR_2g437990 | 46.649 | 373 | 184 | 7 | 5 | 372 | 25 | 387 | 5.82e-108 | 324 |
| MsG0280008026.01.T01 | MTR_4g120380 | 48.225 | 338 | 173 | 1 | 28 | 365 | 35 | 370 | 3.63e-107 | 320 |
| MsG0280008026.01.T01 | MTR_4g119550 | 45.858 | 338 | 180 | 2 | 36 | 372 | 50 | 385 | 9.74e-107 | 320 |
| MsG0280008026.01.T01 | MTR_2g076320 | 44.974 | 378 | 184 | 6 | 5 | 372 | 25 | 388 | 6.65e-106 | 318 |
| MsG0280008026.01.T01 | MTR_2g436440 | 45.455 | 352 | 186 | 4 | 25 | 374 | 36 | 383 | 1.15e-105 | 317 |
| MsG0280008026.01.T01 | MTR_2g437100 | 46.133 | 375 | 183 | 7 | 23 | 384 | 40 | 408 | 2.03e-104 | 314 |
| MsG0280008026.01.T01 | MTR_2g437960 | 44.568 | 359 | 184 | 6 | 37 | 386 | 53 | 405 | 4.11e-104 | 314 |
| MsG0280008026.01.T01 | MTR_2g437960 | 45.821 | 347 | 173 | 6 | 37 | 374 | 53 | 393 | 4.21e-104 | 313 |
| MsG0280008026.01.T01 | MTR_2g437180 | 46.779 | 357 | 177 | 6 | 23 | 374 | 39 | 387 | 5.47e-104 | 313 |
| MsG0280008026.01.T01 | MTR_2g438010 | 43.583 | 374 | 195 | 6 | 5 | 372 | 45 | 408 | 5.27e-101 | 306 |
| MsG0280008026.01.T01 | MTR_2g436400 | 43.417 | 357 | 196 | 3 | 12 | 366 | 24 | 376 | 5.49e-101 | 305 |
| MsG0280008026.01.T01 | MTR_4g119580 | 44.058 | 345 | 189 | 2 | 23 | 365 | 28 | 370 | 2.00e-98 | 298 |
| MsG0280008026.01.T01 | MTR_4g120380 | 47.799 | 318 | 164 | 1 | 28 | 345 | 35 | 350 | 2.15e-98 | 299 |
| MsG0280008026.01.T01 | MTR_2g437940 | 43.733 | 359 | 159 | 6 | 23 | 374 | 39 | 361 | 2.67e-90 | 277 |
| MsG0280008026.01.T01 | MTR_2g019810 | 43.466 | 352 | 196 | 3 | 15 | 366 | 10 | 358 | 1.63e-89 | 275 |
| MsG0280008026.01.T01 | MTR_2g019840 | 39.510 | 367 | 219 | 3 | 15 | 380 | 20 | 384 | 2.53e-82 | 257 |
| MsG0280008026.01.T01 | MTR_3g450500 | 30.838 | 334 | 227 | 1 | 36 | 365 | 37 | 370 | 7.27e-56 | 188 |
| MsG0280008026.01.T01 | MTR_2g437090 | 49.367 | 158 | 80 | 0 | 214 | 371 | 5 | 162 | 5.39e-54 | 177 |
| MsG0280008026.01.T01 | MTR_2g437160 | 44.949 | 198 | 104 | 2 | 177 | 371 | 113 | 308 | 7.28e-54 | 181 |
| MsG0280008026.01.T01 | MTR_2g437160 | 52.174 | 92 | 40 | 2 | 27 | 114 | 51 | 142 | 1.54e-19 | 89.0 |
| MsG0280008026.01.T01 | MTR_4g007490 | 28.940 | 349 | 239 | 3 | 23 | 365 | 23 | 368 | 7.38e-53 | 180 |
| MsG0280008026.01.T01 | MTR_4g119570 | 36.145 | 249 | 124 | 2 | 115 | 363 | 14 | 227 | 3.33e-50 | 169 |
| MsG0280008026.01.T01 | MTR_2g436370 | 42.373 | 177 | 100 | 1 | 10 | 184 | 19 | 195 | 5.80e-40 | 141 |
| MsG0280008026.01.T01 | MTR_8g081000 | 24.183 | 306 | 229 | 2 | 62 | 365 | 81 | 385 | 1.18e-28 | 115 |
| MsG0280008026.01.T01 | MTR_8g081000 | 24.183 | 306 | 229 | 2 | 62 | 365 | 81 | 385 | 1.68e-28 | 115 |
| MsG0280008026.01.T01 | MTR_8g081000 | 24.183 | 306 | 229 | 2 | 62 | 365 | 81 | 385 | 2.29e-28 | 115 |
| MsG0280008026.01.T01 | MTR_8g080990 | 25.987 | 304 | 220 | 4 | 65 | 365 | 71 | 372 | 3.87e-28 | 114 |
| MsG0280008026.01.T01 | MTR_3g085240 | 35.573 | 253 | 91 | 8 | 1 | 220 | 21 | 234 | 6.16e-26 | 105 |
| MsG0280008026.01.T01 | MTR_3g085240 | 41.758 | 91 | 36 | 1 | 269 | 359 | 176 | 249 | 1.09e-15 | 76.6 |
| MsG0280008026.01.T01 | MTR_4g049400 | 47.863 | 117 | 57 | 2 | 23 | 135 | 34 | 150 | 1.05e-23 | 99.0 |
| MsG0280008026.01.T01 | MTR_2g436380 | 41.379 | 58 | 34 | 0 | 212 | 269 | 3 | 60 | 1.42e-12 | 68.2 |
| MsG0280008026.01.T01 | MTR_8g012210 | 20.455 | 308 | 232 | 9 | 81 | 382 | 63 | 363 | 3.42e-12 | 67.8 |
| MsG0280008026.01.T01 | MTR_4g119615 | 58.182 | 55 | 22 | 1 | 304 | 358 | 22 | 75 | 4.09e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008026.01.T01 | AT5G07900 | 33.824 | 340 | 215 | 3 | 38 | 370 | 69 | 405 | 2.90e-65 | 213 |
| MsG0280008026.01.T01 | AT1G21150 | 32.335 | 334 | 222 | 2 | 35 | 364 | 17 | 350 | 1.16e-52 | 179 |
| MsG0280008026.01.T01 | AT1G21150 | 32.831 | 332 | 219 | 2 | 37 | 364 | 55 | 386 | 1.35e-52 | 180 |
| MsG0280008026.01.T01 | AT1G21150 | 33.030 | 330 | 217 | 2 | 37 | 362 | 119 | 448 | 5.25e-52 | 180 |
| MsG0280008026.01.T01 | AT1G61970 | 28.571 | 392 | 237 | 7 | 14 | 365 | 28 | 416 | 2.05e-45 | 162 |
| MsG0280008026.01.T01 | AT1G61970 | 28.571 | 392 | 237 | 7 | 14 | 365 | 28 | 416 | 2.05e-45 | 162 |
| MsG0280008026.01.T01 | AT1G61970 | 28.571 | 392 | 237 | 7 | 14 | 365 | 28 | 416 | 2.05e-45 | 162 |
| MsG0280008026.01.T01 | AT1G61970 | 28.571 | 392 | 237 | 7 | 14 | 365 | 28 | 416 | 2.05e-45 | 162 |
| MsG0280008026.01.T01 | AT1G61970 | 28.571 | 392 | 237 | 7 | 14 | 365 | 28 | 416 | 2.05e-45 | 162 |
| MsG0280008026.01.T01 | AT1G61970 | 28.571 | 392 | 237 | 7 | 14 | 365 | 28 | 416 | 2.05e-45 | 162 |
| MsG0280008026.01.T01 | AT1G61970 | 28.571 | 392 | 237 | 7 | 14 | 365 | 28 | 416 | 2.05e-45 | 162 |
| MsG0280008026.01.T01 | AT1G61980 | 28.726 | 369 | 222 | 7 | 36 | 365 | 50 | 416 | 1.62e-41 | 151 |
| MsG0280008026.01.T01 | AT1G61980 | 28.726 | 369 | 222 | 7 | 36 | 365 | 50 | 416 | 1.62e-41 | 151 |
| MsG0280008026.01.T01 | AT1G61980 | 28.726 | 369 | 222 | 7 | 36 | 365 | 50 | 416 | 1.62e-41 | 151 |
| MsG0280008026.01.T01 | AT1G62120 | 27.513 | 378 | 225 | 7 | 26 | 356 | 36 | 411 | 7.00e-35 | 134 |
| MsG0280008026.01.T01 | AT3G46950 | 31.522 | 276 | 170 | 5 | 8 | 279 | 28 | 288 | 1.03e-34 | 133 |
| MsG0280008026.01.T01 | AT1G61990 | 26.648 | 364 | 221 | 6 | 39 | 364 | 53 | 408 | 7.66e-34 | 130 |
| MsG0280008026.01.T01 | AT1G61990 | 26.648 | 364 | 221 | 6 | 39 | 364 | 53 | 408 | 7.66e-34 | 130 |
| MsG0280008026.01.T01 | AT1G61960 | 25.355 | 422 | 234 | 12 | 17 | 364 | 37 | 451 | 6.87e-32 | 125 |
| MsG0280008026.01.T01 | AT1G62085 | 27.204 | 397 | 205 | 9 | 38 | 356 | 55 | 445 | 8.88e-32 | 125 |
| MsG0280008026.01.T01 | AT1G62085 | 27.204 | 397 | 205 | 9 | 38 | 356 | 55 | 445 | 8.88e-32 | 125 |
| MsG0280008026.01.T01 | AT1G62110 | 25.707 | 389 | 210 | 6 | 39 | 350 | 53 | 439 | 4.05e-31 | 124 |
| MsG0280008026.01.T01 | AT1G62150 | 24.304 | 395 | 223 | 6 | 36 | 356 | 56 | 448 | 2.19e-30 | 122 |
| MsG0280008026.01.T01 | AT1G62010 | 25.532 | 329 | 206 | 6 | 64 | 356 | 64 | 389 | 8.04e-25 | 105 |
| MsG0280008026.01.T01 | AT5G23930 | 25.648 | 386 | 207 | 7 | 38 | 349 | 55 | 434 | 1.07e-23 | 102 |
| MsG0280008026.01.T01 | AT5G64950 | 23.701 | 308 | 225 | 4 | 68 | 365 | 69 | 376 | 2.65e-23 | 100 |
| MsG0280008026.01.T01 | AT1G56380 | 24.513 | 359 | 217 | 9 | 39 | 350 | 17 | 368 | 1.45e-15 | 78.2 |
| MsG0280008026.01.T01 | AT1G56380 | 24.513 | 359 | 217 | 9 | 39 | 350 | 28 | 379 | 1.82e-15 | 77.8 |
Find 63 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGTTATCAAATTATAATT+AGG | 0.157640 | 2:-24390009 | None:intergenic |
| ATAGTCTCGCCTACCTTTCT+AGG | 0.217620 | 2:-24390198 | None:intergenic |
| TATGAATGAATTGAGAAATA+TGG | 0.221089 | 2:+24390218 | MsG0280008026.01.T01:CDS |
| TCGGATACCAACATACATTT+TGG | 0.230388 | 2:-24390384 | None:intergenic |
| AAACTTGATTTCATGAATCT+AGG | 0.301301 | 2:-24389970 | None:intergenic |
| AATTTCTCAGACGCATAAAA+TGG | 0.303465 | 2:-24390588 | None:intergenic |
| GAGTTATCAAATTATAATTA+GGG | 0.322194 | 2:-24390008 | None:intergenic |
| AATTGATACATTTAAGAAAT+GGG | 0.323107 | 2:+24390320 | MsG0280008026.01.T01:CDS |
| GACATTCTTCGTATTGTTGT+AGG | 0.336874 | 2:+24389943 | MsG0280008026.01.T01:CDS |
| AAGAAGTTGATAACTGAATC+AGG | 0.337121 | 2:-24389787 | None:intergenic |
| TTTGTTATTGTTTGGAGAAA+AGG | 0.353610 | 2:+24390490 | MsG0280008026.01.T01:CDS |
| GAATTGATACATTTAAGAAA+TGG | 0.356085 | 2:+24390319 | MsG0280008026.01.T01:CDS |
| AAACTGTTATGAAAGCTATT+AGG | 0.382613 | 2:+24390355 | MsG0280008026.01.T01:CDS |
| TTGGGTTAATGAGTTAGGTT+GGG | 0.414764 | 2:+24390434 | MsG0280008026.01.T01:CDS |
| ATGAATGAATTGAGAAATAT+GGG | 0.422711 | 2:+24390219 | MsG0280008026.01.T01:CDS |
| GTCGGAGGTAGAAGCACCTT+TGG | 0.424855 | 2:-24389923 | None:intergenic |
| TTTGGGTTAATGAGTTAGGT+TGG | 0.425653 | 2:+24390433 | MsG0280008026.01.T01:CDS |
| TCTTACCTTGCCAAGGGACC+AGG | 0.434193 | 2:+24390462 | MsG0280008026.01.T01:CDS |
| AACTTGATTTCATGAATCTA+GGG | 0.435263 | 2:-24389969 | None:intergenic |
| TAAAAGACAACCATAGCTCT+TGG | 0.452781 | 2:-24390519 | None:intergenic |
| GTTTGTGAAATAAAGCTGTT+TGG | 0.457934 | 2:-24389755 | None:intergenic |
| GGAACACGGAAGATAGCATT+AGG | 0.467423 | 2:-24390177 | None:intergenic |
| ATTCCTTAAATCTAATCAAA+AGG | 0.470193 | 2:+24390032 | MsG0280008026.01.T01:CDS |
| GGATTCTTCTTACCTTGCCA+AGG | 0.474249 | 2:+24390455 | MsG0280008026.01.T01:CDS |
| ACAAAACATCCCTGGTCCCT+TGG | 0.484060 | 2:-24390472 | None:intergenic |
| GATCCTACTAGATATAACTT+TGG | 0.490359 | 2:+24390246 | MsG0280008026.01.T01:CDS |
| TATCTTCCGTGTTCCTAGAA+AGG | 0.493028 | 2:+24390185 | MsG0280008026.01.T01:CDS |
| GATGAAGATGGCAGATAAGA+AGG | 0.498815 | 2:+24390680 | MsG0280008026.01.T01:CDS |
| ATCAATTTGATGATTGATGA+TGG | 0.507784 | 2:+24390114 | MsG0280008026.01.T01:CDS |
| ACTGAGAATTCTATAAATGC+TGG | 0.517426 | 2:-24390148 | None:intergenic |
| TCCTACCTCATCCACAAACT+CGG | 0.522785 | 2:+24389703 | MsG0280008026.01.T01:CDS |
| ATTGATACATTTAAGAAATG+GGG | 0.523270 | 2:+24390321 | MsG0280008026.01.T01:CDS |
| TCACCAAAGTTATATCTAGT+AGG | 0.526211 | 2:-24390249 | None:intergenic |
| GATTCTTCTTACCTTGCCAA+GGG | 0.546470 | 2:+24390456 | MsG0280008026.01.T01:CDS |
| ATTTAAGAAATGGGGTTGGT+CGG | 0.552247 | 2:+24390329 | MsG0280008026.01.T01:CDS |
| CGCCTACCTTTCTAGGAACA+CGG | 0.552628 | 2:-24390191 | None:intergenic |
| AAGGATCATTCCAAGAGCTA+TGG | 0.559324 | 2:+24390509 | MsG0280008026.01.T01:CDS |
| ATACATTTAAGAAATGGGGT+TGG | 0.563549 | 2:+24390325 | MsG0280008026.01.T01:CDS |
| CATGTGTGAAACCGAGTTTG+TGG | 0.566219 | 2:-24389714 | None:intergenic |
| CACAGCAAAATCATAAGTCA+TGG | 0.577557 | 2:+24390703 | MsG0280008026.01.T01:CDS |
| TGAAACCGAGTTTGTGGATG+AGG | 0.578404 | 2:-24389708 | None:intergenic |
| AAACAATAACAAAACATCCC+TGG | 0.578613 | 2:-24390480 | None:intergenic |
| CTTACCTTGCCAAGGGACCA+GGG | 0.580713 | 2:+24390463 | MsG0280008026.01.T01:CDS |
| ATATCGTCAAATGATGAAGA+TGG | 0.584508 | 2:+24390668 | MsG0280008026.01.T01:CDS |
| ACATCCCTGGTCCCTTGGCA+AGG | 0.588697 | 2:-24390467 | None:intergenic |
| TAATTACAACAAATCAAAGA+AGG | 0.591734 | 2:-24390078 | None:intergenic |
| TGAGTTTGAATCTGAAACGA+TGG | 0.595602 | 2:-24389671 | None:intergenic |
| TGAGTGGTTGAGTATTGTTG+AGG | 0.597250 | 2:-24389626 | None:intergenic |
| GAAGCAGCCAAAATGTATGT+TGG | 0.599690 | 2:+24390377 | MsG0280008026.01.T01:CDS |
| TACAACAATACGAAGAATGT+CGG | 0.604747 | 2:-24389941 | None:intergenic |
| CTGTTTGGAAGCTTTGAGTG+CGG | 0.608920 | 2:-24389740 | None:intergenic |
| TAAGAAATGGGGTTGGTCGG+AGG | 0.613085 | 2:+24390332 | MsG0280008026.01.T01:CDS |
| TTCCGTGTTCCTAGAAAGGT+AGG | 0.633386 | 2:+24390189 | MsG0280008026.01.T01:CDS |
| TGAATCTGAAACGATGGTAG+TGG | 0.633559 | 2:-24389665 | None:intergenic |
| ACCGAGTTTGTGGATGAGGT+AGG | 0.654680 | 2:-24389704 | None:intergenic |
| ACATCATCAAAAGAGAACCA+TGG | 0.657560 | 2:+24389845 | MsG0280008026.01.T01:CDS |
| CTGAAACGATGGTAGTGGTG+AGG | 0.665601 | 2:-24389660 | None:intergenic |
| GTATCGCAGGAAAGAAGCCA+TGG | 0.666550 | 2:-24389862 | None:intergenic |
| TGAGGAAATTGATGAGTGAG+TGG | 0.676843 | 2:-24389642 | None:intergenic |
| AACAATACGAAGAATGTCGG+AGG | 0.678969 | 2:-24389938 | None:intergenic |
| ATCAATTCTATCATTCCACG+TGG | 0.688199 | 2:-24390304 | None:intergenic |
| TTGATATGGGAAATGCATTG+CGG | 0.690475 | 2:-24389600 | None:intergenic |
| TATGTTTAAGCAAATCCACG+TGG | 0.729827 | 2:+24390289 | MsG0280008026.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATACATTTAAGAAAT+GGG | + | Chr2:24390320-24390339 | MsG0280008026.01.T01:CDS | 15.0% |
| !! | GAGTTATCAAATTATAATTA+GGG | - | Chr2:24390011-24390030 | None:intergenic | 15.0% |
| !! | TGAGTTATCAAATTATAATT+AGG | - | Chr2:24390012-24390031 | None:intergenic | 15.0% |
| !! | AGAGTAAAAATTGAAACTTT+GGG | - | Chr2:24389903-24389922 | None:intergenic | 20.0% |
| !! | ATGAATGAATTGAGAAATAT+GGG | + | Chr2:24390219-24390238 | MsG0280008026.01.T01:CDS | 20.0% |
| !! | ATTCCTTAAATCTAATCAAA+AGG | + | Chr2:24390032-24390051 | MsG0280008026.01.T01:CDS | 20.0% |
| !! | ATTGATACATTTAAGAAATG+GGG | + | Chr2:24390321-24390340 | MsG0280008026.01.T01:CDS | 20.0% |
| !! | GAATTGATACATTTAAGAAA+TGG | + | Chr2:24390319-24390338 | MsG0280008026.01.T01:CDS | 20.0% |
| !! | TAATTACAACAAATCAAAGA+AGG | - | Chr2:24390081-24390100 | None:intergenic | 20.0% |
| !! | TATGAATGAATTGAGAAATA+TGG | + | Chr2:24390218-24390237 | MsG0280008026.01.T01:CDS | 20.0% |
| ! | AAACTGTTATGAAAGCTATT+AGG | + | Chr2:24390355-24390374 | MsG0280008026.01.T01:CDS | 25.0% |
| ! | AAACTTGATTTCATGAATCT+AGG | - | Chr2:24389973-24389992 | None:intergenic | 25.0% |
| ! | AACTTGATTTCATGAATCTA+GGG | - | Chr2:24389972-24389991 | None:intergenic | 25.0% |
| ! | ATCAACTTCTTCAAAAATCA+CGG | + | Chr2:24389799-24389818 | MsG0280008026.01.T01:CDS | 25.0% |
| ! | GAGAGTAAAAATTGAAACTT+TGG | - | Chr2:24389904-24389923 | None:intergenic | 25.0% |
| !! | ACAATCAAACGTTTTACAAA+CGG | - | Chr2:24390735-24390754 | None:intergenic | 25.0% |
| !! | ATCAATTTGATGATTGATGA+TGG | + | Chr2:24390114-24390133 | MsG0280008026.01.T01:CDS | 25.0% |
| !! | ATTGTTGAGGTTTTTGATAT+GGG | - | Chr2:24389616-24389635 | None:intergenic | 25.0% |
| !! | TATTGTTGAGGTTTTTGATA+TGG | - | Chr2:24389617-24389636 | None:intergenic | 25.0% |
| !! | TTTCAATTTTTACTCTCCAA+AGG | + | Chr2:24389907-24389926 | MsG0280008026.01.T01:CDS | 25.0% |
| !!! | GTATGTGTTATTTTATGAAG+AGG | + | Chr2:24390623-24390642 | MsG0280008026.01.T01:CDS | 25.0% |
| !!! | TAGCCTTTTGATTAGATTTA+AGG | - | Chr2:24390038-24390057 | None:intergenic | 25.0% |
| !!! | TTTGTTATTGTTTGGAGAAA+AGG | + | Chr2:24390490-24390509 | MsG0280008026.01.T01:CDS | 25.0% |
| AAACAATAACAAAACATCCC+TGG | - | Chr2:24390483-24390502 | None:intergenic | 30.0% | |
| AATTTCTCAGACGCATAAAA+TGG | - | Chr2:24390591-24390610 | None:intergenic | 30.0% | |
| ACTGAGAATTCTATAAATGC+TGG | - | Chr2:24390151-24390170 | None:intergenic | 30.0% | |
| ATACATTTAAGAAATGGGGT+TGG | + | Chr2:24390325-24390344 | MsG0280008026.01.T01:CDS | 30.0% | |
| ATATCGTCAAATGATGAAGA+TGG | + | Chr2:24390668-24390687 | MsG0280008026.01.T01:CDS | 30.0% | |
| GATCCTACTAGATATAACTT+TGG | + | Chr2:24390246-24390265 | MsG0280008026.01.T01:CDS | 30.0% | |
| GTTTGTGAAATAAAGCTGTT+TGG | - | Chr2:24389758-24389777 | None:intergenic | 30.0% | |
| TACAACAATACGAAGAATGT+CGG | - | Chr2:24389944-24389963 | None:intergenic | 30.0% | |
| TCACCAAAGTTATATCTAGT+AGG | - | Chr2:24390252-24390271 | None:intergenic | 30.0% | |
| ! | CAATCAAACGTTTTACAAAC+GGG | - | Chr2:24390734-24390753 | None:intergenic | 30.0% |
| ! | GTCTTTTATCTTCTAACGAA+GGG | + | Chr2:24390534-24390553 | MsG0280008026.01.T01:CDS | 30.0% |
| ! | TGTCTTTTATCTTCTAACGA+AGG | + | Chr2:24390533-24390552 | MsG0280008026.01.T01:CDS | 30.0% |
| !! | AAGAAGTTGATAACTGAATC+AGG | - | Chr2:24389790-24389809 | None:intergenic | 30.0% |
| !!! | AGGGATGTTTTGTTATTGTT+TGG | + | Chr2:24390482-24390501 | MsG0280008026.01.T01:CDS | 30.0% |
| !!! | AGTTTTTGGGTTAATGAGTT+AGG | + | Chr2:24390429-24390448 | MsG0280008026.01.T01:CDS | 30.0% |
| !!! | CTGAGAAATTGTTTTTGGAA+AGG | + | Chr2:24390601-24390620 | MsG0280008026.01.T01:CDS | 30.0% |
| !!! | TGTGTTATTTTATGAAGAGG+AGG | + | Chr2:24390626-24390645 | MsG0280008026.01.T01:CDS | 30.0% |
| ACATCATCAAAAGAGAACCA+TGG | + | Chr2:24389845-24389864 | MsG0280008026.01.T01:CDS | 35.0% | |
| ATCAATTCTATCATTCCACG+TGG | - | Chr2:24390307-24390326 | None:intergenic | 35.0% | |
| ATCCGACGAAAAAATCGATA+GGG | + | Chr2:24390401-24390420 | MsG0280008026.01.T01:CDS | 35.0% | |
| CACAGCAAAATCATAAGTCA+TGG | + | Chr2:24390703-24390722 | MsG0280008026.01.T01:CDS | 35.0% | |
| GACATTCTTCGTATTGTTGT+AGG | + | Chr2:24389943-24389962 | MsG0280008026.01.T01:CDS | 35.0% | |
| TAAAAGACAACCATAGCTCT+TGG | - | Chr2:24390522-24390541 | None:intergenic | 35.0% | |
| TATCCGACGAAAAAATCGAT+AGG | + | Chr2:24390400-24390419 | MsG0280008026.01.T01:CDS | 35.0% | |
| TATGTTTAAGCAAATCCACG+TGG | + | Chr2:24390289-24390308 | MsG0280008026.01.T01:CDS | 35.0% | |
| TTGATATGGGAAATGCATTG+CGG | - | Chr2:24389603-24389622 | None:intergenic | 35.0% | |
| TTGGGTTAATGAGTTAGGTT+GGG | + | Chr2:24390434-24390453 | MsG0280008026.01.T01:CDS | 35.0% | |
| ! | ATTTAAGAAATGGGGTTGGT+CGG | + | Chr2:24390329-24390348 | MsG0280008026.01.T01:CDS | 35.0% |
| ! | TCGGATACCAACATACATTT+TGG | - | Chr2:24390387-24390406 | None:intergenic | 35.0% |
| ! | TGAGTTTGAATCTGAAACGA+TGG | - | Chr2:24389674-24389693 | None:intergenic | 35.0% |
| ! | TGCGTCTGAGAAATTGTTTT+TGG | + | Chr2:24390596-24390615 | MsG0280008026.01.T01:CDS | 35.0% |
| ! | TTTGGGTTAATGAGTTAGGT+TGG | + | Chr2:24390433-24390452 | MsG0280008026.01.T01:CDS | 35.0% |
| !! | ACTTTGGGAGAATTCTTTTG+TGG | - | Chr2:24389888-24389907 | None:intergenic | 35.0% |
| !! | CTTTGGGAGAATTCTTTTGT+GGG | - | Chr2:24389887-24389906 | None:intergenic | 35.0% |
| AACAATACGAAGAATGTCGG+AGG | - | Chr2:24389941-24389960 | None:intergenic | 40.0% | |
| AAGGATCATTCCAAGAGCTA+TGG | + | Chr2:24390509-24390528 | MsG0280008026.01.T01:CDS | 40.0% | |
| GAAGCAGCCAAAATGTATGT+TGG | + | Chr2:24390377-24390396 | MsG0280008026.01.T01:CDS | 40.0% | |
| GATGAAGATGGCAGATAAGA+AGG | + | Chr2:24390680-24390699 | MsG0280008026.01.T01:CDS | 40.0% | |
| GATTCTTCTTACCTTGCCAA+GGG | + | Chr2:24390456-24390475 | MsG0280008026.01.T01:CDS | 40.0% | |
| TATCTTCCGTGTTCCTAGAA+AGG | + | Chr2:24390185-24390204 | MsG0280008026.01.T01:CDS | 40.0% | |
| TGAGGAAATTGATGAGTGAG+TGG | - | Chr2:24389645-24389664 | None:intergenic | 40.0% | |
| ! | TGAATCTGAAACGATGGTAG+TGG | - | Chr2:24389668-24389687 | None:intergenic | 40.0% |
| ! | TGAGTGGTTGAGTATTGTTG+AGG | - | Chr2:24389629-24389648 | None:intergenic | 40.0% |
| !! | AATTCTTTTGTGGGTATCGC+AGG | - | Chr2:24389878-24389897 | None:intergenic | 40.0% |
| !!! | CACCCTATCGATTTTTTCGT+CGG | - | Chr2:24390406-24390425 | None:intergenic | 40.0% |
| ATAGTCTCGCCTACCTTTCT+AGG | - | Chr2:24390201-24390220 | None:intergenic | 45.0% | |
| CATGTGTGAAACCGAGTTTG+TGG | - | Chr2:24389717-24389736 | None:intergenic | 45.0% | |
| GGAACACGGAAGATAGCATT+AGG | - | Chr2:24390180-24390199 | None:intergenic | 45.0% | |
| GGATTCTTCTTACCTTGCCA+AGG | + | Chr2:24390455-24390474 | MsG0280008026.01.T01:CDS | 45.0% | |
| TCCTACCTCATCCACAAACT+CGG | + | Chr2:24389703-24389722 | MsG0280008026.01.T01:CDS | 45.0% | |
| TGAAACCGAGTTTGTGGATG+AGG | - | Chr2:24389711-24389730 | None:intergenic | 45.0% | |
| TTCCGTGTTCCTAGAAAGGT+AGG | + | Chr2:24390189-24390208 | MsG0280008026.01.T01:CDS | 45.0% | |
| !! | CTGTTTGGAAGCTTTGAGTG+CGG | - | Chr2:24389743-24389762 | None:intergenic | 45.0% |
| !!! | CGATAGGGTGCTGAGTTTTT+GGG | + | Chr2:24390416-24390435 | MsG0280008026.01.T01:CDS | 45.0% |
| !!! | TCGATAGGGTGCTGAGTTTT+TGG | + | Chr2:24390415-24390434 | MsG0280008026.01.T01:CDS | 45.0% |
| ACAAAACATCCCTGGTCCCT+TGG | - | Chr2:24390475-24390494 | None:intergenic | 50.0% | |
| ACCGAGTTTGTGGATGAGGT+AGG | - | Chr2:24389707-24389726 | None:intergenic | 50.0% | |
| GTATCGCAGGAAAGAAGCCA+TGG | - | Chr2:24389865-24389884 | None:intergenic | 50.0% | |
| ! | CGCCTACCTTTCTAGGAACA+CGG | - | Chr2:24390194-24390213 | None:intergenic | 50.0% |
| !! | CTGAAACGATGGTAGTGGTG+AGG | - | Chr2:24389663-24389682 | None:intergenic | 50.0% |
| !! | TAAGAAATGGGGTTGGTCGG+AGG | + | Chr2:24390332-24390351 | MsG0280008026.01.T01:CDS | 50.0% |
| CTTACCTTGCCAAGGGACCA+GGG | + | Chr2:24390463-24390482 | MsG0280008026.01.T01:CDS | 55.0% | |
| TCTTACCTTGCCAAGGGACC+AGG | + | Chr2:24390462-24390481 | MsG0280008026.01.T01:CDS | 55.0% | |
| !! | GTCGGAGGTAGAAGCACCTT+TGG | - | Chr2:24389926-24389945 | None:intergenic | 55.0% |
| ACATCCCTGGTCCCTTGGCA+AGG | - | Chr2:24390470-24390489 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 24389580 | 24390764 | 24389580 | ID=MsG0280008026.01;Name=MsG0280008026.01 |
| Chr2 | mRNA | 24389580 | 24390764 | 24389580 | ID=MsG0280008026.01.T01;Parent=MsG0280008026.01;Name=MsG0280008026.01.T01;_AED=0.44;_eAED=0.44;_QI=0|-1|0|1|-1|1|1|0|394 |
| Chr2 | exon | 24389580 | 24390764 | 24389580 | ID=MsG0280008026.01.T01:exon:40568;Parent=MsG0280008026.01.T01 |
| Chr2 | CDS | 24389580 | 24390764 | 24389580 | ID=MsG0280008026.01.T01:cds;Parent=MsG0280008026.01.T01 |
| Gene Sequence |
| Protein sequence |
