AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008078.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008078.01.T01 MTR_2g437990 85.101 396 55 3 296 690 10 402 0.0 671
MsG0280008078.01.T01 MTR_2g437990 70.251 279 82 1 19 297 124 401 4.52e-128 386
MsG0280008078.01.T01 MTR_2g076320 83.586 396 62 2 296 690 10 403 0.0 649
MsG0280008078.01.T01 MTR_2g076320 71.739 276 78 0 19 294 124 399 5.52e-131 392
MsG0280008078.01.T01 MTR_2g438010 77.778 396 85 2 296 690 30 423 0.0 610
MsG0280008078.01.T01 MTR_2g438010 68.478 276 87 0 19 294 144 419 1.16e-126 382
MsG0280008078.01.T01 MTR_2g437120 76.786 392 80 3 296 682 10 395 0.0 587
MsG0280008078.01.T01 MTR_2g437120 75.458 273 66 1 19 291 125 396 1.78e-135 405
MsG0280008078.01.T01 MTR_2g437940 73.250 400 67 4 296 690 10 374 0.0 555
MsG0280008078.01.T01 MTR_2g437940 68.478 276 59 1 19 294 123 370 1.95e-120 364
MsG0280008078.01.T01 MTR_2g437150 71.033 397 107 3 296 685 10 405 0.0 552
MsG0280008078.01.T01 MTR_2g437150 71.480 277 77 1 19 293 129 405 9.69e-133 397
MsG0280008078.01.T01 MTR_2g437170 70.896 402 107 4 296 688 10 410 0.0 551
MsG0280008078.01.T01 MTR_2g437170 73.239 284 74 1 19 300 129 412 6.80e-139 413
MsG0280008078.01.T01 MTR_2g437960 70.025 397 115 2 296 689 10 405 0.0 539
MsG0280008078.01.T01 MTR_2g437960 75.532 282 67 1 19 300 127 406 2.62e-145 429
MsG0280008078.01.T01 MTR_2g437960 70.127 395 114 2 296 687 10 403 0.0 538
MsG0280008078.01.T01 MTR_2g437960 76.449 276 65 0 19 294 127 402 4.19e-145 430
MsG0280008078.01.T01 MTR_2g437160 69.388 392 112 4 296 683 21 408 0.0 535
MsG0280008078.01.T01 MTR_2g437160 68.750 272 84 1 19 290 137 407 3.07e-126 381
MsG0280008078.01.T01 MTR_2g437180 68.101 395 112 3 296 685 10 395 7.65e-178 512
MsG0280008078.01.T01 MTR_2g437180 70.280 286 80 2 11 293 112 395 8.59e-133 397
MsG0280008078.01.T01 MTR_2g437100 68.684 380 114 2 296 670 16 395 2.98e-176 509
MsG0280008078.01.T01 MTR_2g437100 70.922 282 74 2 19 298 134 409 1.89e-129 389
MsG0280008078.01.T01 MTR_2g437200 87.770 278 34 0 1 278 121 398 6.25e-173 500
MsG0280008078.01.T01 MTR_2g437200 64.341 387 97 3 319 670 18 398 3.07e-158 462
MsG0280008078.01.T01 MTR_2g438020 78.405 301 64 1 1 301 160 459 1.07e-158 467
MsG0280008078.01.T01 MTR_2g438020 62.274 387 108 3 336 687 70 453 2.77e-155 458
MsG0280008078.01.T01 MTR_2g437240 61.440 389 113 2 336 689 31 417 3.56e-153 450
MsG0280008078.01.T01 MTR_2g437240 74.830 294 74 0 1 294 121 414 1.46e-144 428
MsG0280008078.01.T01 MTR_2g437130 61.892 370 130 3 317 686 29 387 4.35e-148 436
MsG0280008078.01.T01 MTR_2g437130 64.493 276 95 1 19 294 115 387 2.60e-118 359
MsG0280008078.01.T01 MTR_2g436440 52.033 369 168 2 314 682 29 388 1.85e-120 365
MsG0280008078.01.T01 MTR_2g436440 52.747 273 126 1 19 291 120 389 1.67e-91 290
MsG0280008078.01.T01 MTR_2g437080 51.240 363 168 2 318 680 27 380 5.94e-119 361
MsG0280008078.01.T01 MTR_2g437080 53.558 267 121 1 19 285 114 377 8.75e-93 293
MsG0280008078.01.T01 MTR_2g437020 52.174 368 164 4 313 678 21 378 9.01e-117 355
MsG0280008078.01.T01 MTR_2g437020 53.091 275 123 3 19 291 113 383 3.01e-88 281
MsG0280008078.01.T01 MTR_2g437060 49.589 365 175 2 314 678 38 393 2.09e-110 339
MsG0280008078.01.T01 MTR_2g437060 53.704 270 122 2 19 288 129 395 1.52e-91 290
MsG0280008078.01.T01 MTR_2g437040 49.589 365 175 2 318 682 27 382 4.07e-108 333
MsG0280008078.01.T01 MTR_2g437040 50.735 272 131 1 19 290 114 382 1.79e-85 274
MsG0280008078.01.T01 MTR_2g437030 48.077 364 180 2 319 682 114 468 2.78e-104 326
MsG0280008078.01.T01 MTR_2g437030 48.718 273 137 1 19 291 200 469 1.76e-83 271
MsG0280008078.01.T01 MTR_2g436400 48.387 341 173 1 334 674 44 381 6.12e-103 320
MsG0280008078.01.T01 MTR_2g436400 50.190 263 128 1 19 281 121 380 1.19e-81 264
MsG0280008078.01.T01 MTR_2g436460 50.712 351 160 5 324 673 41 379 3.91e-101 315
MsG0280008078.01.T01 MTR_2g436460 48.485 264 132 3 19 281 119 379 1.06e-69 232
MsG0280008078.01.T01 MTR_2g437260 46.369 358 185 4 320 675 19 371 1.21e-99 311
MsG0280008078.01.T01 MTR_2g437260 42.561 289 161 3 19 305 108 393 4.60e-70 234
MsG0280008078.01.T01 MTR_4g119550 44.540 348 187 3 332 678 46 388 1.69e-97 306
MsG0280008078.01.T01 MTR_4g119550 45.896 268 142 1 19 286 124 388 1.69e-78 256
MsG0280008078.01.T01 MTR_4g120380 46.784 342 169 3 330 667 37 369 8.90e-93 293
MsG0280008078.01.T01 MTR_4g120380 44.186 258 141 1 19 276 116 370 2.91e-64 218
MsG0280008078.01.T01 MTR_4g120380 47.368 323 157 3 330 648 37 350 3.05e-88 283
MsG0280008078.01.T01 MTR_4g120380 42.636 258 144 2 19 275 116 370 2.18e-59 206
MsG0280008078.01.T01 MTR_4g120380 29.752 242 141 8 20 243 186 416 4.11e-18 87.8
MsG0280008078.01.T01 MTR_4g119580 45.058 344 176 3 328 667 35 369 3.37e-88 281
MsG0280008078.01.T01 MTR_4g119580 42.960 277 154 2 1 276 97 370 3.18e-64 218
MsG0280008078.01.T01 MTR_2g437160 72.283 184 51 0 107 290 133 316 7.43e-88 278
MsG0280008078.01.T01 MTR_2g437160 58.952 229 83 2 458 683 97 317 6.19e-84 268
MsG0280008078.01.T01 MTR_2g437160 76.068 117 21 3 296 408 21 134 1.72e-45 165
MsG0280008078.01.T01 MTR_2g019840 40.310 387 194 9 308 675 8 376 2.85e-75 247
MsG0280008078.01.T01 MTR_2g019840 40.909 264 145 6 19 278 115 371 8.17e-49 176
MsG0280008078.01.T01 MTR_2g019810 43.582 335 178 6 339 670 33 359 2.70e-73 241
MsG0280008078.01.T01 MTR_2g019810 43.657 268 132 6 19 278 103 359 4.52e-54 190
MsG0280008078.01.T01 MTR_2g437090 59.146 164 67 0 121 284 1 164 1.32e-60 201
MsG0280008078.01.T01 MTR_2g437090 53.216 171 80 0 513 683 1 171 3.24e-55 186
MsG0280008078.01.T01 MTR_4g119570 38.492 252 119 3 25 276 14 229 4.29e-48 169
MsG0280008078.01.T01 MTR_4g119570 37.200 250 121 2 417 666 14 227 2.91e-42 153
MsG0280008078.01.T01 MTR_3g450500 31.325 332 223 3 339 667 40 369 1.96e-45 166
MsG0280008078.01.T01 MTR_3g450500 29.963 267 176 3 19 278 110 372 4.30e-34 134
MsG0280008078.01.T01 MTR_4g007490 29.101 378 251 8 295 667 2 367 1.04e-39 150
MsG0280008078.01.T01 MTR_4g007490 28.409 264 179 7 19 276 109 368 1.83e-24 106
MsG0280008078.01.T01 MTR_4g049400 50.000 148 69 2 294 437 4 150 1.17e-36 137
MsG0280008078.01.T01 MTR_2g436370 48.092 131 68 0 339 469 48 178 6.36e-33 126
MsG0280008078.01.T01 MTR_8g081000 27.815 302 214 2 368 667 85 384 8.77e-30 122
MsG0280008078.01.T01 MTR_8g081000 28.137 263 179 4 19 276 128 385 2.96e-23 102
MsG0280008078.01.T01 MTR_8g081000 27.815 302 214 2 368 667 85 384 1.09e-29 122
MsG0280008078.01.T01 MTR_8g081000 28.137 263 179 4 19 276 128 385 3.49e-23 102
MsG0280008078.01.T01 MTR_8g081000 26.300 327 236 3 367 690 84 408 1.37e-29 122
MsG0280008078.01.T01 MTR_8g081000 28.137 263 179 4 19 276 128 385 3.64e-23 103
MsG0280008078.01.T01 MTR_8g080990 28.188 298 210 3 369 664 73 368 2.24e-28 117
MsG0280008078.01.T01 MTR_8g080990 29.688 256 176 4 19 272 115 368 5.31e-24 105
MsG0280008078.01.T01 MTR_3g085240 60.000 90 19 1 180 269 176 248 2.91e-24 103
MsG0280008078.01.T01 MTR_3g085240 55.556 90 23 1 572 661 176 248 3.87e-21 94.0
MsG0280008078.01.T01 MTR_3g085240 42.000 150 66 7 314 460 40 171 3.29e-17 82.4
MsG0280008078.01.T01 MTR_2g436380 60.000 60 24 0 121 180 1 60 8.34e-17 82.0
MsG0280008078.01.T01 MTR_2g436380 39.823 113 44 4 513 619 1 95 1.59e-13 72.0
MsG0280008078.01.T01 MTR_4g119615 52.632 57 25 1 212 268 20 74 2.21e-11 61.2
MsG0280008078.01.T01 MTR_2g034600 23.529 255 172 7 376 618 215 458 8.24e-11 65.5
MsG0280008078.01.T01 MTR_2g034600 23.529 255 172 7 376 618 280 523 9.04e-11 65.5
MsG0280008078.01.T01 MTR_2g034600 23.529 255 172 7 376 618 276 519 9.63e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008078.01.T01 AT5G07900 32.831 332 218 4 339 667 70 399 3.40e-50 181
MsG0280008078.01.T01 AT5G07900 35.249 261 164 4 19 275 140 399 1.81e-42 159
MsG0280008078.01.T01 AT1G21150 29.474 380 254 6 296 665 9 384 5.77e-46 168
MsG0280008078.01.T01 AT1G21150 29.749 279 188 4 1 273 108 384 2.37e-28 118
MsG0280008078.01.T01 AT1G21150 29.474 380 254 6 296 665 73 448 1.61e-45 169
MsG0280008078.01.T01 AT1G21150 29.749 279 188 4 1 273 172 448 6.39e-28 118
MsG0280008078.01.T01 AT1G21150 30.183 328 224 3 341 665 23 348 3.48e-44 162
MsG0280008078.01.T01 AT1G21150 29.749 279 188 4 1 273 72 348 1.55e-28 117
MsG0280008078.01.T01 AT1G61980 28.056 360 201 8 339 653 53 399 3.44e-31 127
MsG0280008078.01.T01 AT1G61980 23.711 291 172 7 19 267 123 405 2.89e-15 79.0
MsG0280008078.01.T01 AT1G61980 28.056 360 201 8 339 653 53 399 3.44e-31 127
MsG0280008078.01.T01 AT1G61980 23.711 291 172 7 19 267 123 405 2.89e-15 79.0
MsG0280008078.01.T01 AT1G61980 28.056 360 201 8 339 653 53 399 3.44e-31 127
MsG0280008078.01.T01 AT1G61980 23.711 291 172 7 19 267 123 405 2.89e-15 79.0
MsG0280008078.01.T01 AT1G61990 27.989 368 214 6 339 667 53 408 4.21e-30 124
MsG0280008078.01.T01 AT1G61990 26.351 296 169 5 19 275 123 408 1.16e-19 92.4
MsG0280008078.01.T01 AT1G61990 27.989 368 214 6 339 667 53 408 4.21e-30 124
MsG0280008078.01.T01 AT1G61990 26.351 296 169 5 19 275 123 408 1.16e-19 92.4
MsG0280008078.01.T01 AT1G61970 27.095 358 207 9 339 653 53 399 4.77e-29 120
MsG0280008078.01.T01 AT1G61970 24.823 282 168 8 19 261 123 399 2.55e-16 82.4
MsG0280008078.01.T01 AT1G61970 27.095 358 207 9 339 653 53 399 4.77e-29 120
MsG0280008078.01.T01 AT1G61970 24.823 282 168 8 19 261 123 399 2.55e-16 82.4
MsG0280008078.01.T01 AT1G61970 27.095 358 207 9 339 653 53 399 4.77e-29 120
MsG0280008078.01.T01 AT1G61970 24.823 282 168 8 19 261 123 399 2.55e-16 82.4
MsG0280008078.01.T01 AT1G61970 27.095 358 207 9 339 653 53 399 4.77e-29 120
MsG0280008078.01.T01 AT1G61970 24.823 282 168 8 19 261 123 399 2.55e-16 82.4
MsG0280008078.01.T01 AT1G61970 27.095 358 207 9 339 653 53 399 4.77e-29 120
MsG0280008078.01.T01 AT1G61970 24.823 282 168 8 19 261 123 399 2.55e-16 82.4
MsG0280008078.01.T01 AT1G61970 27.095 358 207 9 339 653 53 399 4.77e-29 120
MsG0280008078.01.T01 AT1G61970 24.823 282 168 8 19 261 123 399 2.55e-16 82.4
MsG0280008078.01.T01 AT1G61970 27.095 358 207 9 339 653 53 399 4.77e-29 120
MsG0280008078.01.T01 AT1G61970 24.823 282 168 8 19 261 123 399 2.55e-16 82.4
MsG0280008078.01.T01 AT5G64950 29.043 303 209 5 327 625 28 328 8.20e-29 119
MsG0280008078.01.T01 AT5G64950 27.509 269 186 4 17 276 108 376 2.67e-23 103
MsG0280008078.01.T01 AT3G46950 27.675 271 186 3 316 585 30 291 1.18e-24 108
MsG0280008078.01.T01 AT3G46950 24.615 195 138 3 1 193 104 291 8.90e-11 65.1
MsG0280008078.01.T01 AT1G62120 24.581 358 229 6 311 630 27 381 2.87e-22 100
MsG0280008078.01.T01 AT1G62120 25.818 275 166 5 1 238 108 381 1.85e-15 79.7
MsG0280008078.01.T01 AT1G61960 28.854 253 161 4 339 583 53 294 4.44e-21 97.4
MsG0280008078.01.T01 AT1G61960 27.225 191 129 4 6 191 109 294 7.76e-11 65.5
MsG0280008078.01.T01 AT1G62085 27.668 253 163 4 339 582 56 297 6.83e-19 90.5
MsG0280008078.01.T01 AT1G62085 27.668 253 163 4 339 582 56 297 6.83e-19 90.5
MsG0280008078.01.T01 AT1G62110 26.772 254 166 4 339 583 53 295 6.72e-18 87.4
MsG0280008078.01.T01 AT1G62150 26.087 253 167 4 339 582 59 300 2.67e-17 85.9
MsG0280008078.01.T01 AT1G62150 22.222 315 172 7 25 267 135 448 4.50e-11 66.2
MsG0280008078.01.T01 AT1G62010 25.391 256 150 4 19 238 109 359 2.18e-16 82.4
MsG0280008078.01.T01 AT1G62010 23.000 300 182 5 371 630 69 359 1.37e-15 80.1
MsG0280008078.01.T01 AT5G23930 24.265 272 192 5 305 572 19 280 4.86e-15 78.6

Find 106 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTGATGTCTGATTT+TGG 0.116384 2:+25173916 MsG0280008078.01.T01:CDS
TCTTACCTCATCAACAATTT+TGG 0.162834 2:+25173490 MsG0280008078.01.T01:CDS
ATCAATCTGATGTCTGATTT+TGG 0.167543 2:+25170152 MsG0280008078.01.T01:CDS
AAGCTAGTTTGTAAAATTAC+AGG 0.232888 2:-25169999 None:intergenic
TTGGAGGAAGTTAAAGGTTT+AGG 0.236931 2:+25170251 MsG0280008078.01.T01:CDS
AAACTATAACCACACATATT+TGG 0.239144 2:-25170512 None:intergenic
TTTCTTATAGTTTACCTAAA+AGG 0.248707 2:+25174286 MsG0280008078.01.T01:CDS
TTGGAGGAAGTTAAGTGTTT+AGG 0.257551 2:+25174015 MsG0280008078.01.T01:CDS
CATCCTCCAATCACTACTTT+TGG 0.261925 2:+25170278 MsG0280008078.01.T01:CDS
TGGAGGAAGTTAAGTGTTTA+GGG 0.262883 2:+25174016 MsG0280008078.01.T01:CDS
TGGAGGAAGTTAAAGGTTTA+GGG 0.271068 2:+25170252 MsG0280008078.01.T01:CDS
ATAACTGAAACAGGATTATC+TGG 0.272402 2:-25173571 None:intergenic
ATGCTGCATTTGAGTGAAAA+TGG 0.281235 2:-25173418 None:intergenic
AAGTCATTGGAGGAAGTTAA+AGG 0.288064 2:+25170245 MsG0280008078.01.T01:CDS
AAGCTGTTATTCGAGTATTT+AGG 0.318007 2:+25174151 MsG0280008078.01.T01:CDS
TCAATTATGTTGGGATTCAT+TGG 0.321983 2:+25170475 MsG0280008078.01.T01:CDS
AAGGGATTTGATTAAGTCAT+TGG 0.323129 2:+25170232 MsG0280008078.01.T01:CDS
GTGGTTATAGTTTACATAAA+AGG 0.329396 2:+25170522 MsG0280008078.01.T01:CDS
AGTTGATGTCTTTAAGAAAT+GGG 0.334222 2:+25170352 MsG0280008078.01.T01:CDS
TCCCTTGAACAAAATATAGA+TGG 0.336767 2:-25170215 None:intergenic
TAGAGGTAACCCTAAGTTCT+TGG 0.343348 2:+25169884 MsG0280008078.01.T01:CDS
AAATGATTTGATTAAGTCAT+TGG 0.345760 2:+25173996 MsG0280008078.01.T01:CDS
AAGCTTAATTCCAAGAACTT+AGG 0.347303 2:-25169894 None:intergenic
TTGCTAGACTGCTTCTTAGA+AGG 0.348343 2:+25173956 MsG0280008078.01.T01:CDS
AAGTTGATGTCTTTAAGAAA+TGG 0.356329 2:+25170351 MsG0280008078.01.T01:CDS
ATCACCTTCTTTCAAAATCA+TGG 0.357053 2:+25173592 MsG0280008078.01.T01:CDS
ATTGAAACCAACATCAAATT+AGG 0.361121 2:-25170416 None:intergenic
AATGTATGAGTAAAATACTT+TGG 0.370949 2:+25174085 MsG0280008078.01.T01:CDS
GATAGAAAATATTCAAACTT+TGG 0.371358 2:-25173694 None:intergenic
GCTTAATTCGACATTCGAAA+TGG 0.385119 2:+25170093 MsG0280008078.01.T01:CDS
TTCAATTGATAAGATTAATC+TGG 0.385597 2:+25174197 MsG0280008078.01.T01:CDS
TACAGAAGATCTTACCCATT+TGG 0.386126 2:-25170756 None:intergenic
TATTGCAAAATTGAGGCTCT+TGG 0.390283 2:-25174315 None:intergenic
GCAAACAATGGTATCCTTGT+TGG 0.390955 2:-25173836 None:intergenic
AGCTTAATTCCAAGAACTTA+GGG 0.393617 2:-25169893 None:intergenic
GATTGATATTAGCCACAATA+AGG 0.403119 2:-25170136 None:intergenic
AAACTACTTTGTAAAATTTG+AGG 0.407296 2:-25173763 None:intergenic
AACTACTTTGTAAAATTTGA+GGG 0.411226 2:-25173762 None:intergenic
AACATTGTCCACATGGTTAG+AGG 0.414086 2:+25169867 None:intergenic
TTGGGTTAATCAAATGGGTT+GGG 0.420431 2:+25174230 MsG0280008078.01.T01:CDS
TCATTTGAACAAAATATAGA+TGG 0.424258 2:-25173979 None:intergenic
AGATCAATACATTACACATT+TGG 0.428401 2:-25174520 None:intergenic
TTGGGTCAATCAATTATGTT+GGG 0.433615 2:+25170466 MsG0280008078.01.T01:CDS
ATGTATGAGTAAAATACTTT+GGG 0.434480 2:+25174086 MsG0280008078.01.T01:CDS
TTTGGGTCAATCAATTATGT+TGG 0.439467 2:+25170465 MsG0280008078.01.T01:CDS
ATCAGATGAAGAAACACCTT+TGG 0.441657 2:-25169952 None:intergenic
ATCAGATGAAGAAACACCTT+TGG 0.441657 2:-25173716 None:intergenic
GTCCGAAAAGCGGTTGTTGA+AGG 0.442684 2:-25174045 None:intergenic
AAGAAGGTGATAACTGAAAC+AGG 0.444501 2:-25173580 None:intergenic
CTTAATTCGACATTCGAAAT+GGG 0.446962 2:+25170094 MsG0280008078.01.T01:CDS
TCAAATGGGTTGGGATCCCT+TGG 0.453367 2:+25174239 MsG0280008078.01.T01:CDS
GTGGCATGTCATCCACCAAA+TGG 0.454184 2:+25170741 MsG0280008078.01.T01:CDS
TTTGGGTTAATCAAATGGGT+TGG 0.454317 2:+25174229 MsG0280008078.01.T01:CDS
CAAATACAACGGAGAACAAT+GGG 0.473276 2:+25174487 MsG0280008078.01.T01:CDS
TTTCATCACAACCCCACAAA+AGG 0.473339 2:+25173665 MsG0280008078.01.T01:CDS
GCAGTCCCAAAAGTAGTGAT+TGG 0.476571 2:-25170284 None:intergenic
TCAATACATTACACATTTGG+TGG 0.494508 2:-25174517 None:intergenic
AGAAGATCTTACCCATTTGG+TGG 0.500395 2:-25170753 None:intergenic
GTTGATGTCTTTAAGAAATG+GGG 0.513781 2:+25170353 MsG0280008078.01.T01:CDS
TACATAAAAGGATCATTCCA+AGG 0.520767 2:+25170534 MsG0280008078.01.T01:CDS
ATTAGCCACAATAAGGTGAT+GGG 0.522815 2:-25170129 None:intergenic
AAACTATAAGAAAACATAAG+TGG 0.525922 2:-25174276 None:intergenic
ATTAGCCTCTAGAACATGAT+GGG 0.526186 2:-25173893 None:intergenic
TACATTACACATTTGGTGGA+TGG 0.530490 2:-25174513 None:intergenic
CAAAAGATATTGCAAAATTG+AGG 0.532650 2:-25174322 None:intergenic
TGGCATGTCATCCACCAAAT+GGG 0.533577 2:+25170742 MsG0280008078.01.T01:CDS
CAAAGCTTTCAACAACAAGC+AGG 0.537532 2:+25173534 MsG0280008078.01.T01:CDS
ATGAGGTAAGATACAGCAAA+AGG 0.538628 2:-25173478 None:intergenic
TGCTGCATTTGAGTGAAAAT+GGG 0.540143 2:-25173417 None:intergenic
AGAAACCAAAATTGTTGATG+AGG 0.541698 2:-25173495 None:intergenic
AATTGCATAACTGAGGCCCT+TGG 0.542717 2:-25170551 None:intergenic
ATATCAGCCTAATTTGATGT+TGG 0.542801 2:+25170409 MsG0280008078.01.T01:CDS
TTATCTATTAAAGCTATATG+AGG 0.548013 2:+25170685 MsG0280008078.01.T01:CDS
ATATTCTCAGAATAAGCAAA+TGG 0.549537 2:-25174384 None:intergenic
TATTAGCCTCTAGAACATGA+TGG 0.549790 2:-25173894 None:intergenic
TATTAGCCACAATAAGGTGA+TGG 0.550694 2:-25170130 None:intergenic
TGGATATTTAGTAAGTTCCA+AGG 0.551751 2:-25174256 None:intergenic
GGATTTGATTAAGTCATTGG+AGG 0.560936 2:+25170235 MsG0280008078.01.T01:CDS
TTATCCCCATCACCTTATTG+TGG 0.562119 2:+25170124 MsG0280008078.01.T01:CDS
TGATTTGATTAAGTCATTGG+AGG 0.568604 2:+25173999 MsG0280008078.01.T01:CDS
TCCGAAAAGCGGTTGTTGAA+GGG 0.570224 2:-25174044 None:intergenic
ATTGAAGTCAACATCAAACT+AGG 0.571733 2:-25174180 None:intergenic
ACTGCTTTGATGGCCAAGAA+AGG 0.571792 2:+25170302 MsG0280008078.01.T01:CDS
GCAAATACAACGGAGAACAA+TGG 0.572984 2:+25174486 MsG0280008078.01.T01:CDS
GTCCCAAAAGTAGTGATTGG+AGG 0.586110 2:-25170281 None:intergenic
CACAACCCCACAAAAGGTTG+TGG 0.590593 2:+25173671 MsG0280008078.01.T01:CDS
TTATCCCCATCATGTTCTAG+AGG 0.591171 2:+25173888 MsG0280008078.01.T01:CDS
ATTTCGAATTAAGCAAACAA+TGG 0.591852 2:-25173848 None:intergenic
TTTGATGATGATGCGTATGT+GGG 0.595672 2:-25173626 None:intergenic
ATGTCTTTAAGAAATGGGGT+TGG 0.604281 2:+25170357 MsG0280008078.01.T01:CDS
TAACTGAAACAGGATTATCT+GGG 0.608189 2:-25173570 None:intergenic
ACATAAAAGGATCATTCCAA+GGG 0.612722 2:+25170535 MsG0280008078.01.T01:CDS
GGATATTTAGTAAGTTCCAA+GGG 0.625307 2:-25174255 None:intergenic
TCTAAGAAGCAGTCTAGCAA+TGG 0.630562 2:-25173953 None:intergenic
CAAAAGAAATTGCATAACTG+AGG 0.634260 2:-25170558 None:intergenic
AATGTTCTTTAAAACTAACA+AGG 0.637962 2:+25170058 MsG0280008078.01.T01:CDS
AATGAAACTTGCAAATACAA+CGG 0.655557 2:+25174476 MsG0280008078.01.T01:CDS
TTAGCCACAATAAGGTGATG+GGG 0.666360 2:-25170128 None:intergenic
ATTGAAACTTGTATACACAA+AGG 0.672367 2:+25170712 MsG0280008078.01.T01:CDS
AACTGAAACAGGATTATCTG+GGG 0.676500 2:-25173569 None:intergenic
TTAGCCTCTAGAACATGATG+GGG 0.688598 2:-25173892 None:intergenic
GTGAAAATGGGAATGACAAG+TGG 0.688711 2:-25173405 None:intergenic
TATCAAAGCAGTCCGAAAAG+CGG 0.690793 2:-25174055 None:intergenic
GCTAAATGTCCAAATATGTG+TGG 0.697574 2:+25170503 MsG0280008078.01.T01:CDS
GTATACACAAAGGAGAACAG+TGG 0.740544 2:+25170722 MsG0280008078.01.T01:CDS
GGTTGTGATGAAAGTAACCA+CGG 0.765250 2:-25173655 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATTAAAAGTAACAA+TGG - Chr2:25173065-25173084 None:intergenic 10.0%
!!! CTAATAATAATAATACATTT+TGG + Chr2:25173032-25173051 MsG0280008078.01.T01:intron 10.0%
!! ATAAAGTATAATGAAATTCT+TGG + Chr2:25171357-25171376 MsG0280008078.01.T01:intron 15.0%
!! TATTTAACAATTCAAAAAGA+GGG - Chr2:25173804-25173823 None:intergenic 15.0%
!! TCATTTATATGTTTATACTT+TGG - Chr2:25173123-25173142 None:intergenic 15.0%
!! TTCATTAAAAACAAAAACAA+CGG - Chr2:25172817-25172836 None:intergenic 15.0%
!!! AATATATCTTTCGTTTTTTT+AGG + Chr2:25172837-25172856 MsG0280008078.01.T01:intron 15.0%
!!! TATTGAAGAGTTTTTAAAAA+AGG - Chr2:25171776-25171795 None:intergenic 15.0%
!!! TATTTTCATTTATATGTTTG+TGG - Chr2:25173198-25173217 None:intergenic 15.0%
!!! TTTTAATTACTTCAAAACAA+TGG - Chr2:25172878-25172897 None:intergenic 15.0%
!! AAACTACTTTGTAAAATTTG+AGG - Chr2:25173766-25173785 None:intergenic 20.0%
!! AAACTATAAGAAAACATAAG+TGG - Chr2:25174279-25174298 None:intergenic 20.0%
!! AAATGATTTGATTAAGTCAT+TGG + Chr2:25173996-25174015 MsG0280008078.01.T01:CDS 20.0%
!! AACTACTTTGTAAAATTTGA+GGG - Chr2:25173765-25173784 None:intergenic 20.0%
!! AATGTATGAGTAAAATACTT+TGG + Chr2:25174085-25174104 MsG0280008078.01.T01:CDS 20.0%
!! AATGTGTTATAAAAATTGGA+CGG + Chr2:25171092-25171111 MsG0280008078.01.T01:intron 20.0%
!! AGTAATAAACTAATAATGGT+TGG - Chr2:25171047-25171066 None:intergenic 20.0%
!! ATGTATGAGTAAAATACTTT+GGG + Chr2:25174086-25174105 MsG0280008078.01.T01:CDS 20.0%
!! ATTCTTAACAATTCAAAAAG+AGG - Chr2:25170041-25170060 None:intergenic 20.0%
!! CTATTTAACAATTCAAAAAG+AGG - Chr2:25173805-25173824 None:intergenic 20.0%
!! GATAGAAAATATTCAAACTT+TGG - Chr2:25169933-25169952 None:intergenic 20.0%
!! GATCAGTAATAAACTAATAA+TGG - Chr2:25171051-25171070 None:intergenic 20.0%
!! GTAATAAACTAATAATGGTT+GGG - Chr2:25171046-25171065 None:intergenic 20.0%
!! TAAATACTTCAAATCAAAGA+AGG - Chr2:25170805-25170824 None:intergenic 20.0%
!! TAATAAACTAATAATGGTTG+GGG - Chr2:25171045-25171064 None:intergenic 20.0%
!! TATAATGAAATTCTTGGAAA+AGG + Chr2:25171363-25171382 MsG0280008078.01.T01:intron 20.0%
!! TCATTTGAACAAAATATAGA+TGG - Chr2:25173982-25174001 None:intergenic 20.0%
!! TTATCTATTAAAGCTATATG+AGG + Chr2:25170685-25170704 MsG0280008078.01.T01:CDS 20.0%
!! TTCAATTGATAAGATTAATC+TGG + Chr2:25174197-25174216 MsG0280008078.01.T01:CDS 20.0%
!! TTCTTAACAATTCAAAAAGA+GGG - Chr2:25170040-25170059 None:intergenic 20.0%
!! TTTCTTATAGTTTACCTAAA+AGG + Chr2:25174286-25174305 MsG0280008078.01.T01:CDS 20.0%
!!! AAGTTGATGTTTTTAAGAAA+CGG + Chr2:25174115-25174134 MsG0280008078.01.T01:CDS 20.0%
!!! AATGTTCTTTAAAACTAACA+AGG + Chr2:25170058-25170077 MsG0280008078.01.T01:CDS 20.0%
!!! AATTTTTGGGTTAATCAAAT+GGG + Chr2:25174225-25174244 MsG0280008078.01.T01:CDS 20.0%
!!! CATTTTCATTTATATGTAAG+TGG + Chr2:25173158-25173177 MsG0280008078.01.T01:intron 20.0%
!!! CTCTTTTTGAATTGTTAAAT+AGG + Chr2:25173803-25173822 MsG0280008078.01.T01:CDS 20.0%
!!! TATTTTACTCATACATTTCT+TGG - Chr2:25174082-25174101 None:intergenic 20.0%
!!! TCAAATTTTACAAAGTAGTT+TGG + Chr2:25173765-25173784 MsG0280008078.01.T01:CDS 20.0%
!!! TTGAAGTATTTATTCTTTCT+AGG + Chr2:25170813-25170832 MsG0280008078.01.T01:intron 20.0%
!!! TTTGAATATTTTCTATCCAA+AGG + Chr2:25169936-25169955 MsG0280008078.01.T01:CDS 20.0%
! AAACTATAACCACACATATT+TGG - Chr2:25170515-25170534 None:intergenic 25.0%
! AAACTTAAGTCAAAGTTCTT+CGG - Chr2:25171227-25171246 None:intergenic 25.0%
! AAGGTATGAGTAAAAAACTT+TGG + Chr2:25170321-25170340 MsG0280008078.01.T01:CDS 25.0%
! AATAAACTAATAATGGTTGG+GGG - Chr2:25171044-25171063 None:intergenic 25.0%
! AATGAAACTTGCAAATACAA+CGG + Chr2:25174476-25174495 MsG0280008078.01.T01:CDS 25.0%
! AATTACTTCAAAACAATGGA+AGG - Chr2:25172874-25172893 None:intergenic 25.0%
! ACAACTCAAAAATCATTACT+TGG - Chr2:25171706-25171725 None:intergenic 25.0%
! AGAATAAGTTACTTACACAA+AGG + Chr2:25172355-25172374 MsG0280008078.01.T01:intron 25.0%
! AGGTATGAGTAAAAAACTTT+GGG + Chr2:25170322-25170341 MsG0280008078.01.T01:CDS 25.0%
! ATATTCTCAGAATAAGCAAA+TGG - Chr2:25174387-25174406 None:intergenic 25.0%
! ATCACTGAATAATTGAATGA+TGG + Chr2:25172072-25172091 MsG0280008078.01.T01:intron 25.0%
! ATCATCTTTATCACTTATCA+TGG + Chr2:25171844-25171863 MsG0280008078.01.T01:intron 25.0%
! ATTGAAACCAACATCAAATT+AGG - Chr2:25170419-25170438 None:intergenic 25.0%
! ATTGAAACTTGTATACACAA+AGG + Chr2:25170712-25170731 MsG0280008078.01.T01:CDS 25.0%
! ATTTCGAATTAAGCAAACAA+TGG - Chr2:25173851-25173870 None:intergenic 25.0%
! CAAAAGATATTGCAAAATTG+AGG - Chr2:25174325-25174344 None:intergenic 25.0%
! GTGGTTATAGTTTACATAAA+AGG + Chr2:25170522-25170541 MsG0280008078.01.T01:CDS 25.0%
! TGGGAATGTGTTATAAAAAT+TGG + Chr2:25171088-25171107 MsG0280008078.01.T01:intron 25.0%
! TTAAAAACAAAAACAACGGA+AGG - Chr2:25172813-25172832 None:intergenic 25.0%
!! AACCATCTATATTTTGTTCA+AGG + Chr2:25170213-25170232 MsG0280008078.01.T01:CDS 25.0%
!! AAGCTAGTTTGTAAAATTAC+AGG - Chr2:25170002-25170021 None:intergenic 25.0%
!! ACCATCTATATTTTGTTCAA+GGG + Chr2:25170214-25170233 MsG0280008078.01.T01:CDS 25.0%
!! ACTTCAAAATGTGTATCTTT+TGG - Chr2:25173248-25173267 None:intergenic 25.0%
!! AGTAGAGATTTTACCTTAAT+AGG + Chr2:25172730-25172749 MsG0280008078.01.T01:intron 25.0%
!! AGTTGATGTCTTTAAGAAAT+GGG + Chr2:25170352-25170371 MsG0280008078.01.T01:CDS 25.0%
!! ATCAATTTGATGTCTGATTT+TGG + Chr2:25173916-25173935 MsG0280008078.01.T01:CDS 25.0%
!! ATGCAATTTCTTTTGATGAA+AGG + Chr2:25170566-25170585 MsG0280008078.01.T01:CDS 25.0%
!! ATTTTCTCAGAATAAGCAAA+TGG - Chr2:25170623-25170642 None:intergenic 25.0%
!! TTGCAATATCTTTTGATGAA+AGG + Chr2:25174330-25174349 MsG0280008078.01.T01:CDS 25.0%
!!! AAAACCATGATTTTGAAAGA+AGG - Chr2:25173599-25173618 None:intergenic 25.0%
!!! AAGACCTTATTGAGTTTTAT+GGG - Chr2:25172601-25172620 None:intergenic 25.0%
!!! AAGTTGATGTCTTTAAGAAA+TGG + Chr2:25170351-25170370 MsG0280008078.01.T01:CDS 25.0%
!!! AGTTGATGTTTTTAAGAAAC+GGG + Chr2:25174116-25174135 MsG0280008078.01.T01:CDS 25.0%
!!! CAAGTTTGTTTTCAGATTTA+AGG + Chr2:25170652-25170671 MsG0280008078.01.T01:CDS 25.0%
!!! CGTAAAACAGTTTTTTTTGT+TGG - Chr2:25172930-25172949 None:intergenic 25.0%
!!! GAATTTTTGGGTTAATCAAA+TGG + Chr2:25174224-25174243 MsG0280008078.01.T01:CDS 25.0%
!!! TAATCTGGTGATGAATTTTT+GGG + Chr2:25174212-25174231 MsG0280008078.01.T01:CDS 25.0%
!!! TAATTTGCTGATGAGTTTTT+GGG + Chr2:25170448-25170467 MsG0280008078.01.T01:CDS 25.0%
!!! TGAAGAGACTTTTTTTTTGT+GGG - Chr2:25172907-25172926 None:intergenic 25.0%
!!! TTAATCTGGTGATGAATTTT+TGG + Chr2:25174211-25174230 MsG0280008078.01.T01:CDS 25.0%
!!! TTAATTTGCTGATGAGTTTT+TGG + Chr2:25170447-25170466 MsG0280008078.01.T01:CDS 25.0%
!!! TTTTTTACTCATACCTTTCT+TGG - Chr2:25170318-25170337 None:intergenic 25.0%
AAACATACACTAAATCACCT+TGG + Chr2:25171626-25171645 MsG0280008078.01.T01:intron 30.0%
AAGCTGTTATTCGAGTATTT+AGG + Chr2:25174151-25174170 MsG0280008078.01.T01:CDS 30.0%
AAGCTTAATTCCAAGAACTT+AGG - Chr2:25169897-25169916 None:intergenic 30.0%
AAGGGATTTGATTAAGTCAT+TGG + Chr2:25170232-25170251 MsG0280008078.01.T01:CDS 30.0%
AATCAATCAAACAACCACTT+TGG - Chr2:25170977-25170996 None:intergenic 30.0%
ACAATTTCTTTAGACCAAAG+TGG + Chr2:25170960-25170979 MsG0280008078.01.T01:intron 30.0%
ACATAAAAGGATCATTCCAA+GGG + Chr2:25170535-25170554 MsG0280008078.01.T01:CDS 30.0%
AGAAACCAAAATTGTTGATG+AGG - Chr2:25173498-25173517 None:intergenic 30.0%
AGCTTAATTCCAAGAACTTA+GGG - Chr2:25169896-25169915 None:intergenic 30.0%
AGTCAAGAATTCATATTGGT+GGG + Chr2:25171527-25171546 MsG0280008078.01.T01:intron 30.0%
ATAACTGAAACAGGATTATC+TGG - Chr2:25173574-25173593 None:intergenic 30.0%
ATATCAGCCTAATTTGATGT+TGG + Chr2:25170409-25170428 MsG0280008078.01.T01:CDS 30.0%
ATCACCTTCTTTCAAAATCA+TGG + Chr2:25173592-25173611 MsG0280008078.01.T01:CDS 30.0%
ATCTTTACATCCTACTTCAT+CGG - Chr2:25171460-25171479 None:intergenic 30.0%
ATTGAAGTCAACATCAAACT+AGG - Chr2:25174183-25174202 None:intergenic 30.0%
CAAAAGAAATTGCATAACTG+AGG - Chr2:25170561-25170580 None:intergenic 30.0%
CCAATATGAATTCTTGACTA+TGG - Chr2:25171526-25171545 None:intergenic 30.0%
CCATAGTCAAGAATTCATAT+TGG + Chr2:25171523-25171542 MsG0280008078.01.T01:intron 30.0%
CTTAATTCGACATTCGAAAT+GGG + Chr2:25170094-25170113 MsG0280008078.01.T01:CDS 30.0%
GACGATATATGATTTAGTAG+AGG + Chr2:25171498-25171517 MsG0280008078.01.T01:intron 30.0%
GATTGATATTAGCCACAATA+AGG - Chr2:25170139-25170158 None:intergenic 30.0%
GGATATTTAGTAAGTTCCAA+GGG - Chr2:25174258-25174277 None:intergenic 30.0%
TAACTGAAACAGGATTATCT+GGG - Chr2:25173573-25173592 None:intergenic 30.0%
TACATAAAAGGATCATTCCA+AGG + Chr2:25170534-25170553 MsG0280008078.01.T01:CDS 30.0%
TAGTCAAGAATTCATATTGG+TGG + Chr2:25171526-25171545 MsG0280008078.01.T01:intron 30.0%
TCAATACATTACACATTTGG+TGG - Chr2:25174520-25174539 None:intergenic 30.0%
TCAATTATGTTGGGATTCAT+TGG + Chr2:25170475-25170494 MsG0280008078.01.T01:CDS 30.0%
TCCCTTGAACAAAATATAGA+TGG - Chr2:25170218-25170237 None:intergenic 30.0%
TGATTTGATTAAGTCATTGG+AGG + Chr2:25173999-25174018 MsG0280008078.01.T01:CDS 30.0%
TGCAACATATATAGTGTTTC+TGG - Chr2:25172649-25172668 None:intergenic 30.0%
TGGATATTTAGTAAGTTCCA+AGG - Chr2:25174259-25174278 None:intergenic 30.0%
TGTATATCTGTAGTCTGTAA+CGG + Chr2:25171327-25171346 MsG0280008078.01.T01:intron 30.0%
TTGGGTCAATCAATTATGTT+GGG + Chr2:25170466-25170485 MsG0280008078.01.T01:CDS 30.0%
TTTAAAAAAGGCAAGACAGT+GGG - Chr2:25171764-25171783 None:intergenic 30.0%
TTTGGGTCAATCAATTATGT+TGG + Chr2:25170465-25170484 MsG0280008078.01.T01:CDS 30.0%
! ATCAATCTGATGTCTGATTT+TGG + Chr2:25170152-25170171 MsG0280008078.01.T01:CDS 30.0%
! ATCTTTTGATGAAAGGTTTG+CGG + Chr2:25174337-25174356 MsG0280008078.01.T01:CDS 30.0%
! ATTTTGTGCAGAAATGGAAT+TGG + Chr2:25170994-25171013 MsG0280008078.01.T01:intron 30.0%
! CAAGTGGTTGTTGAATTTTA+AGG - Chr2:25173392-25173411 None:intergenic 30.0%
! GAAGACCTTATTGAGTTTTA+TGG - Chr2:25172602-25172621 None:intergenic 30.0%
! GTTGATGTCTTTAAGAAATG+GGG + Chr2:25170353-25170372 MsG0280008078.01.T01:CDS 30.0%
! TCAAAGTTGTAGTTCTTTTC+TGG - Chr2:25171969-25171988 None:intergenic 30.0%
! TCTTACCTCATCAACAATTT+TGG + Chr2:25173490-25173509 MsG0280008078.01.T01:CDS 30.0%
!! AGACCTTATTGAGTTTTATG+GGG - Chr2:25172600-25172619 None:intergenic 30.0%
!! GACAATTTGTTTTCTGCAAA+AGG + Chr2:25171896-25171915 MsG0280008078.01.T01:intron 30.0%
!! GTTGATGTTTTTAAGAAACG+GGG + Chr2:25174117-25174136 MsG0280008078.01.T01:CDS 30.0%
!! GTTTGTTTTCAGATTTAAGG+AGG + Chr2:25170655-25170674 MsG0280008078.01.T01:CDS 30.0%
!! TGATTGATTTTGTGCAGAAA+TGG + Chr2:25170988-25171007 MsG0280008078.01.T01:intron 30.0%
!! TTTTAAAAAAGGCAAGACAG+TGG - Chr2:25171765-25171784 None:intergenic 30.0%
!!! ACACATTTTGAAGTAGTATC+TGG + Chr2:25173254-25173273 MsG0280008078.01.T01:intron 30.0%
!!! GAAGAGACTTTTTTTTTGTG+GGG - Chr2:25172906-25172925 None:intergenic 30.0%
!!! GTGAAGAGACTTTTTTTTTG+TGG - Chr2:25172908-25172927 None:intergenic 30.0%
AACATGTATACCATGTTGGA+AGG + Chr2:25172312-25172331 MsG0280008078.01.T01:intron 35.0%
AACTGAAACAGGATTATCTG+GGG - Chr2:25173572-25173591 None:intergenic 35.0%
AAGAAGGTGATAACTGAAAC+AGG - Chr2:25173583-25173602 None:intergenic 35.0%
AAGTCATTGGAGGAAGTTAA+AGG + Chr2:25170245-25170264 MsG0280008078.01.T01:CDS 35.0%
ACAACCTCTTCATATTTCTC+AGG - Chr2:25172013-25172032 None:intergenic 35.0%
ATCAAAGAAGGAACAAGACA+AGG - Chr2:25170793-25170812 None:intergenic 35.0%
ATCAGATGAAGAAACACCTT+TGG - Chr2:25169955-25169974 None:intergenic 35.0%
ATGAGGTAAGATACAGCAAA+AGG - Chr2:25173481-25173500 None:intergenic 35.0%
ATGCTGCATTTGAGTGAAAA+TGG - Chr2:25173421-25173440 None:intergenic 35.0%
ATTAGCCACAATAAGGTGAT+GGG - Chr2:25170132-25170151 None:intergenic 35.0%
CAAAATATCGTTAGTCGAGA+AGG + Chr2:25172682-25172701 MsG0280008078.01.T01:intron 35.0%
CAAATACAACGGAGAACAAT+GGG + Chr2:25174487-25174506 MsG0280008078.01.T01:CDS 35.0%
CACTATATATGTTGCATGAG+AGG + Chr2:25172653-25172672 MsG0280008078.01.T01:intron 35.0%
CATTGTGTATAAAGCCAACA+AGG - Chr2:25171408-25171427 None:intergenic 35.0%
CGAAGAGAAACATCTTCTAA+CGG + Chr2:25172520-25172539 MsG0280008078.01.T01:intron 35.0%
CTGCGAGAAAAACAATTTGT+TGG - Chr2:25173332-25173351 None:intergenic 35.0%
CTTCCCCATAAAACTCAATA+AGG + Chr2:25172594-25172613 MsG0280008078.01.T01:intron 35.0%
CTTCCTTTCGATGTAAAACT+TGG - Chr2:25172462-25172481 None:intergenic 35.0%
GATGCTGCAATCAAATTGTA+CGG + Chr2:25172281-25172300 MsG0280008078.01.T01:intron 35.0%
GCTAAATGTCCAAATATGTG+TGG + Chr2:25170503-25170522 MsG0280008078.01.T01:CDS 35.0%
GCTTAATTCGACATTCGAAA+TGG + Chr2:25170093-25170112 MsG0280008078.01.T01:CDS 35.0%
GGATTTGATTAAGTCATTGG+AGG + Chr2:25170235-25170254 MsG0280008078.01.T01:CDS 35.0%
GTATATCTGTAGTCTGTAAC+GGG + Chr2:25171328-25171347 MsG0280008078.01.T01:intron 35.0%
GTATGAGATGGAACACTATA+TGG + Chr2:25171271-25171290 MsG0280008078.01.T01:intron 35.0%
GTATTTATTCTTTCTAGGCC+AGG + Chr2:25170818-25170837 MsG0280008078.01.T01:intron 35.0%
GTGAAACATGTATACCATGT+TGG + Chr2:25172308-25172327 MsG0280008078.01.T01:intron 35.0%
GTTGTATGGTGTCTACTTTA+CGG - Chr2:25171935-25171954 None:intergenic 35.0%
TACAGAAGATCTTACCCATT+TGG - Chr2:25170759-25170778 None:intergenic 35.0%
TAGTTGCAATTTCGATGCAT+AGG + Chr2:25170914-25170933 MsG0280008078.01.T01:intron 35.0%
TATAGTGTTCCATCTCATAC+TGG - Chr2:25171271-25171290 None:intergenic 35.0%
TATATATGTTGCATGAGAGG+AGG + Chr2:25172656-25172675 MsG0280008078.01.T01:intron 35.0%
TATATCTGTAGTCTGTAACG+GGG + Chr2:25171329-25171348 MsG0280008078.01.T01:intron 35.0%
TATTAGCCACAATAAGGTGA+TGG - Chr2:25170133-25170152 None:intergenic 35.0%
TATTGCAAAATTGAGGCTCT+TGG - Chr2:25174318-25174337 None:intergenic 35.0%
TCACATTGTCACTCCTATTA+AGG - Chr2:25172746-25172765 None:intergenic 35.0%
TGCTGCATTTGAGTGAAAAT+GGG - Chr2:25173420-25173439 None:intergenic 35.0%
TGGAGGAAGTTAAAGGTTTA+GGG + Chr2:25170252-25170271 MsG0280008078.01.T01:CDS 35.0%
TGGAGGAAGTTAAGTGTTTA+GGG + Chr2:25174016-25174035 MsG0280008078.01.T01:CDS 35.0%
TGTGAATACTTTGATGCATG+TGG - Chr2:25172116-25172135 None:intergenic 35.0%
TTGCAGCATCTTCATAATCT+TGG - Chr2:25172271-25172290 None:intergenic 35.0%
TTGGAGGAAGTTAAAGGTTT+AGG + Chr2:25170251-25170270 MsG0280008078.01.T01:CDS 35.0%
TTGGAGGAAGTTAAGTGTTT+AGG + Chr2:25174015-25174034 MsG0280008078.01.T01:CDS 35.0%
TTGTAGAAGTTGTGCTTAGA+TGG + Chr2:25172201-25172220 MsG0280008078.01.T01:intron 35.0%
! AAGAATTCATATTGGTGGGT+TGG + Chr2:25171531-25171550 MsG0280008078.01.T01:intron 35.0%
! ACACATTCCCAAAAGTATGA+TGG - Chr2:25171079-25171098 None:intergenic 35.0%
! ACTTTGATGCATGTGGATTT+TGG - Chr2:25172109-25172128 None:intergenic 35.0%
! ATCTCACACCATCATACTTT+TGG + Chr2:25171068-25171087 MsG0280008078.01.T01:intron 35.0%
! ATGTCTTTAAGAAATGGGGT+TGG + Chr2:25170357-25170376 MsG0280008078.01.T01:CDS 35.0%
! CAAGTGTGTTTTCAGCTTTA+AGG + Chr2:25174416-25174435 MsG0280008078.01.T01:CDS 35.0%
! TACATTACACATTTGGTGGA+TGG - Chr2:25174516-25174535 None:intergenic 35.0%
! TAGGTTTTCGAAAACCAACA+AGG + Chr2:25173822-25173841 MsG0280008078.01.T01:CDS 35.0%
! TCTCACACCATCATACTTTT+GGG + Chr2:25171069-25171088 MsG0280008078.01.T01:intron 35.0%
! TGGTTTGTGTTTGTGTTGTA+TGG - Chr2:25171949-25171968 None:intergenic 35.0%
! TTGGGTTAATCAAATGGGTT+GGG + Chr2:25174230-25174249 MsG0280008078.01.T01:CDS 35.0%
! TTTGGGTTAATCAAATGGGT+TGG + Chr2:25174229-25174248 MsG0280008078.01.T01:CDS 35.0%
!! AGAATTCATATTGGTGGGTT+GGG + Chr2:25171532-25171551 MsG0280008078.01.T01:intron 35.0%
!! ATCCTCCAATCACTACTTTT+GGG + Chr2:25170279-25170298 MsG0280008078.01.T01:CDS 35.0%
!! ATGTTTTTAAGAAACGGGGT+TGG + Chr2:25174121-25174140 MsG0280008078.01.T01:CDS 35.0%
!! ATTAGCCTCTAGAACATGAT+GGG - Chr2:25173896-25173915 None:intergenic 35.0%
!! TATTAGCCTCTAGAACATGA+TGG - Chr2:25173897-25173916 None:intergenic 35.0%
!! TTGGCTTTATACACAATGAG+TGG + Chr2:25171410-25171429 MsG0280008078.01.T01:intron 35.0%
!! TTTGATGATGATGCGTATGT+GGG - Chr2:25173629-25173648 None:intergenic 35.0%
!!! TTTTGATGATGATGCGTATG+TGG - Chr2:25173630-25173649 None:intergenic 35.0%
AGAAGATCTTACCCATTTGG+TGG - Chr2:25170756-25170775 None:intergenic 40.0%
AGCATACCTTTGTCTGATGT+TGG + Chr2:25171147-25171166 MsG0280008078.01.T01:intron 40.0%
ATGGTTGGGGGATGAATTAA+TGG - Chr2:25171032-25171051 None:intergenic 40.0%
ATTCTTTCTAGGCCAGGATA+AGG + Chr2:25170824-25170843 MsG0280008078.01.T01:intron 40.0%
ATTGGACGGAGCATATTTCT+TGG + Chr2:25171106-25171125 MsG0280008078.01.T01:intron 40.0%
CAAAGCTTTCAACAACAAGC+AGG + Chr2:25173534-25173553 MsG0280008078.01.T01:CDS 40.0%
CACTGAGTAAGCTAGAATCA+CGG - Chr2:25171599-25171618 None:intergenic 40.0%
CAGAACTACACGAGATTCAT+TGG - Chr2:25172170-25172189 None:intergenic 40.0%
CGGAAAAAAAATGCGAGCTT+AGG + Chr2:25174357-25174376 MsG0280008078.01.T01:CDS 40.0%
GAAAAGGTAGAGTTTGAGTG+TGG + Chr2:25171379-25171398 MsG0280008078.01.T01:intron 40.0%
GACAGTGGGAAGATATTCAA+AGG - Chr2:25171750-25171769 None:intergenic 40.0%
GATTGTCATTCCTTCCAACA+TGG - Chr2:25172325-25172344 None:intergenic 40.0%
GCAAACAATGGTATCCTTGT+TGG - Chr2:25173839-25173858 None:intergenic 40.0%
GCAAATACAACGGAGAACAA+TGG + Chr2:25174486-25174505 MsG0280008078.01.T01:CDS 40.0%
GCATTACCAACATCAGACAA+AGG - Chr2:25171156-25171175 None:intergenic 40.0%
GCCAACCTCTCTTGAAATAA+TGG - Chr2:25172548-25172567 None:intergenic 40.0%
GCCATTATTTCAAGAGAGGT+TGG + Chr2:25172544-25172563 MsG0280008078.01.T01:intron 40.0%
GGGAAGATATTCAAAGGAGT+TGG - Chr2:25171744-25171763 None:intergenic 40.0%
GGTTGTGATGAAAGTAACCA+CGG - Chr2:25173658-25173677 None:intergenic 40.0%
GTAAAACTTGGCCACATATC+CGG - Chr2:25172450-25172469 None:intergenic 40.0%
GTATACACAAAGGAGAACAG+TGG + Chr2:25170722-25170741 MsG0280008078.01.T01:CDS 40.0%
GTGAAAATGGGAATGACAAG+TGG - Chr2:25173408-25173427 None:intergenic 40.0%
GTTGTGCTTAGATGGCTTAA+AGG + Chr2:25172209-25172228 MsG0280008078.01.T01:intron 40.0%
TAGAGGTAACCCTAAGTTCT+TGG + Chr2:25169884-25169903 MsG0280008078.01.T01:CDS 40.0%
TATCAAAGCAGTCCGAAAAG+CGG - Chr2:25174058-25174077 None:intergenic 40.0%
TCTAAGAAGCAGTCTAGCAA+TGG - Chr2:25173956-25173975 None:intergenic 40.0%
TGGACCTGAGAAATATGAAG+AGG + Chr2:25172006-25172025 MsG0280008078.01.T01:intron 40.0%
TGGGATGAGAATTTAGAGGT+TGG + Chr2:25172568-25172587 MsG0280008078.01.T01:intron 40.0%
TTACTCCTACCAGTATGAGA+TGG + Chr2:25171259-25171278 MsG0280008078.01.T01:intron 40.0%
TTAGCCACAATAAGGTGATG+GGG - Chr2:25170131-25170150 None:intergenic 40.0%
TTATCCCCATCACCTTATTG+TGG + Chr2:25170124-25170143 MsG0280008078.01.T01:CDS 40.0%
TTATCCCCATCATGTTCTAG+AGG + Chr2:25173888-25173907 MsG0280008078.01.T01:CDS 40.0%
TTATTTCAAGAGAGGTTGGC+TGG + Chr2:25172548-25172567 MsG0280008078.01.T01:intron 40.0%
TTCTTTCTAGGCCAGGATAA+GGG + Chr2:25170825-25170844 MsG0280008078.01.T01:intron 40.0%
TTGCTAGACTGCTTCTTAGA+AGG + Chr2:25173956-25173975 MsG0280008078.01.T01:CDS 40.0%
TTGGACGGAGCATATTTCTT+GGG + Chr2:25171107-25171126 MsG0280008078.01.T01:intron 40.0%
TTGTCTTCCTTATGCTCATC+AGG - Chr2:25171562-25171581 None:intergenic 40.0%
TTTACCTCAACTGCTGACAA+AGG - Chr2:25171178-25171197 None:intergenic 40.0%
TTTCATCACAACCCCACAAA+AGG + Chr2:25173665-25173684 MsG0280008078.01.T01:CDS 40.0%
! ATGAATCTCGTGTAGTTCTG+AGG + Chr2:25172170-25172189 MsG0280008078.01.T01:intron 40.0%
! ATTTCTTGGGAGGCTATTTC+TGG + Chr2:25171120-25171139 MsG0280008078.01.T01:intron 40.0%
! CATCCTCCAATCACTACTTT+TGG + Chr2:25170278-25170297 MsG0280008078.01.T01:CDS 40.0%
! GCTCTTGGAATGATCCTTTT+AGG - Chr2:25174303-25174322 None:intergenic 40.0%
! TATTTCAAGAGAGGTTGGCT+GGG + Chr2:25172549-25172568 MsG0280008078.01.T01:intron 40.0%
! TGGCCAAGTTTTACATCGAA+AGG + Chr2:25172456-25172475 MsG0280008078.01.T01:intron 40.0%
!! TCATCATCAAAAAAGCACCG+TGG + Chr2:25173638-25173657 MsG0280008078.01.T01:CDS 40.0%
!! TTAGCCTCTAGAACATGATG+GGG - Chr2:25173895-25173914 None:intergenic 40.0%
!!! GTGTGTTTTCAGCTTTAAGG+AGG + Chr2:25174419-25174438 MsG0280008078.01.T01:CDS 40.0%
!!! TACTTTTGGGACTGCTTTGA+TGG + Chr2:25170292-25170311 MsG0280008078.01.T01:CDS 40.0%
AATGCCTTTGTCAGCAGTTG+AGG + Chr2:25171171-25171190 MsG0280008078.01.T01:intron 45.0%
AATTGCATAACTGAGGCCCT+TGG - Chr2:25170554-25170573 None:intergenic 45.0%
ACAATACCAACCCCTTATCC+TGG - Chr2:25170839-25170858 None:intergenic 45.0%
CAACAAGATAGCCACAAGAC+CGG + Chr2:25172428-25172447 MsG0280008078.01.T01:intron 45.0%
CATATTTCTCAGGTCCAGTG+AGG - Chr2:25172003-25172022 None:intergenic 45.0%
GCAGTCCCAAAAGTAGTGAT+TGG - Chr2:25170287-25170306 None:intergenic 45.0%
GGCTTAAAGGTGAGTGATGT+GGG + Chr2:25172222-25172241 MsG0280008078.01.T01:intron 45.0%
GGGTATACCTGATGAGCATA+AGG + Chr2:25171552-25171571 MsG0280008078.01.T01:intron 45.0%
GGTGCAAGTTGTGTCGTATT+GGG - Chr2:25171206-25171225 None:intergenic 45.0%
GTCCCAAAAGTAGTGATTGG+AGG - Chr2:25170284-25170303 None:intergenic 45.0%
GTGTTCCATCTCATACTGGT+AGG - Chr2:25171267-25171286 None:intergenic 45.0%
TCCGAAAAGCGGTTGTTGAA+GGG - Chr2:25174047-25174066 None:intergenic 45.0%
TCTTTCTAGGCCAGGATAAG+GGG + Chr2:25170826-25170845 MsG0280008078.01.T01:intron 45.0%
TGATTGCAAAGAAGCCTCAC+TGG + Chr2:25171986-25172005 MsG0280008078.01.T01:intron 45.0%
TGCAAAATACGACACGACCA+AGG - Chr2:25171646-25171665 None:intergenic 45.0%
TGCTTCACAGTGAAGAGTTG+TGG + Chr2:25172777-25172796 MsG0280008078.01.T01:intron 45.0%
TGGCATGTCATCCACCAAAT+GGG + Chr2:25170742-25170761 MsG0280008078.01.T01:CDS 45.0%
TGGCTGGGATGAGAATTTAG+AGG + Chr2:25172564-25172583 MsG0280008078.01.T01:intron 45.0%
TGGCTTAAAGGTGAGTGATG+TGG + Chr2:25172221-25172240 MsG0280008078.01.T01:intron 45.0%
TTTGAGTGTGGCTTCCTTGT+TGG + Chr2:25171391-25171410 MsG0280008078.01.T01:intron 45.0%
! ACTGCTTTGATGGCCAAGAA+AGG + Chr2:25170302-25170321 MsG0280008078.01.T01:CDS 45.0%
! ACTTTGGCCACAACCTTTTG+TGG - Chr2:25173681-25173700 None:intergenic 45.0%
! ATGACTGACTCCGATGAAGT+AGG + Chr2:25171447-25171466 MsG0280008078.01.T01:intron 45.0%
! CTTTGGCCACAACCTTTTGT+GGG - Chr2:25173680-25173699 None:intergenic 45.0%
! GGTAGGAGTAAGAGTGTACA+TGG - Chr2:25171250-25171269 None:intergenic 45.0%
! TTTGGCCACAACCTTTTGTG+GGG - Chr2:25173679-25173698 None:intergenic 45.0%
!! ACCCTTCAACAACCGCTTTT+CGG + Chr2:25174043-25174062 MsG0280008078.01.T01:CDS 45.0%
!! GGATAAGGGGTTGGTATTGT+TGG + Chr2:25170839-25170858 MsG0280008078.01.T01:intron 45.0%
!! TACACAATGAGTGGTGCCAT+TGG + Chr2:25171419-25171438 MsG0280008078.01.T01:intron 45.0%
!!! ATATGATTTTTTTTTTTTTA+AGG + Chr2:25172980-25172999 MsG0280008078.01.T01:intron 5.0%
CACAACCCCACAAAAGGTTG+TGG + Chr2:25173671-25173690 MsG0280008078.01.T01:CDS 50.0%
CGGCGCCATTATTTCAAGAG+AGG + Chr2:25172540-25172559 MsG0280008078.01.T01:intron 50.0%
CGGTGCAAGTTGTGTCGTAT+TGG - Chr2:25171207-25171226 None:intergenic 50.0%
GACGGAGCATATTTCTTGGG+AGG + Chr2:25171110-25171129 MsG0280008078.01.T01:intron 50.0%
GAGTCAGTCATGACGACCAA+TGG - Chr2:25171438-25171457 None:intergenic 50.0%
GTCCGAAAAGCGGTTGTTGA+AGG - Chr2:25174048-25174067 None:intergenic 50.0%
GTGGCATGTCATCCACCAAA+TGG + Chr2:25170741-25170760 MsG0280008078.01.T01:CDS 50.0%
TAGCCACAAGACCGGATATG+TGG + Chr2:25172436-25172455 MsG0280008078.01.T01:intron 50.0%
!! GAGTGATGTGGGAGCACTAA+AGG + Chr2:25172233-25172252 MsG0280008078.01.T01:intron 50.0%
!! GATGTGGGAGCACTAAAGGT+TGG + Chr2:25172237-25172256 MsG0280008078.01.T01:intron 50.0%
!! TCAAATGGGTTGGGATCCCT+TGG + Chr2:25174239-25174258 MsG0280008078.01.T01:CDS 50.0%
GCCATGACGAGAACGTGACA+CGG + Chr2:25172382-25172401 MsG0280008078.01.T01:intron 55.0%
TCCGTGTCACGTTCTCGTCA+TGG - Chr2:25172386-25172405 None:intergenic 55.0%
TCTAGGCCAGGATAAGGGGT+TGG + Chr2:25170830-25170849 MsG0280008078.01.T01:intron 55.0%
TGGCCACATATCCGGTCTTG+TGG - Chr2:25172442-25172461 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 25169879 25174539 25169879 ID=MsG0280008078.01;Name=MsG0280008078.01
Chr2 mRNA 25169879 25174539 25169879 ID=MsG0280008078.01.T01;Parent=MsG0280008078.01;Name=MsG0280008078.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|2|0|690
Chr2 exon 25169879 25170763 25169879 ID=MsG0280008078.01.T01:exon:14036;Parent=MsG0280008078.01.T01
Chr2 exon 25173352 25174539 25173352 ID=MsG0280008078.01.T01:exon:14037;Parent=MsG0280008078.01.T01
Chr2 CDS 25169879 25170763 25169879 ID=MsG0280008078.01.T01:cds;Parent=MsG0280008078.01.T01
Chr2 CDS 25173352 25174539 25173352 ID=MsG0280008078.01.T01:cds;Parent=MsG0280008078.01.T01
Gene Sequence

>MsG0280008078.01.T01

ATGGTTAGAGGTAACCCTAAGTTCTTGGAATTAAGCTTGAAGAATCATGAAATTAAGTTTGAATATTTTCTATCCAAAGGTGTTTCTTCATCTGATATTGTTTCATTGTTAACTTCAAATCCTGTAATTTTACAAACTAGCTTCGAGAAACGAATAATCCCTCTTTTTGAATTGTTAAGAATGTTCTTTAAAACTAACAAGGATACAATTGTTTGCTTAATTCGACATTCGAAATGGGTTGCTAGTTATCCCCATCACCTTATTGTGGCTAATATCAATCTGATGTCTGATTTTGGAGTTTCTGATAATGTCATTGCTAGATTGCTTCAAATTAAACCATCTATATTTTGTTCAAGGGATTTGATTAAGTCATTGGAGGAAGTTAAAGGTTTAGGGTTTCATCCTCCAATCACTACTTTTGGGACTGCTTTGATGGCCAAGAAAGGTATGAGTAAAAAACTTTGGGATGAGAAAGTTGATGTCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTAATTCGAGCATTTAGATATCAGCCTAATTTGATGTTGGTTTCAATTGATAAGATTAATTTGCTGATGAGTTTTTGGGTCAATCAATTATGTTGGGATTCATTGGCACTTGCTAAATGTCCAAATATGTGTGGTTATAGTTTACATAAAAGGATCATTCCAAGGGCCTCAGTTATGCAATTTCTTTTGATGAAAGGTTTGCGAAAAAAGAATGCAAGCTTAGTTGCACCATTTGCTTATTCTGAGAAAATGTTCTTGAGCAAGTTTGTTTTCAGATTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATGAGGAAAAATTGAAACTTGTATACACAAAGGAGAACAGTGGCATGTCATCCACCAAATGGAATCTTGTTTTATGTCTCATCACAACAAAATCAACAACCTTAAAATTCAACAACCACTTGTCATTCCCATTTTCACTCAAATGCAGCATCACAACATCTCAAACTCAATCAGAATCAATCACACAACCTTTTGCTGTATCTTACCTCATCAACAATTTTGGTTTCTCAACTGAATCAGCTCTCAAAGCTTTCAACAACAAGCAGGTTCGTTTCAATACCCCAGATAATCCTGTTTCAGTTATCACCTTCTTTCAAAATCATGGTTTTTCACACTCCCACATACGCATCATCATCAAAAAAGCACCGTGGTTACTTTCATCACAACCCCACAAAAGGTTGTGGCCAAAGTTTGAATATTTTCTATCCAAAGGTGTTTCTTCATCTGATATTGTTTCATTGTTAACTTCAAACCCTCAAATTTTACAAAGTAGTTTGGAGAATCGAATAATCCCTCTTTTTGAATTGTTAAATAGGTTTTCGAAAACCAACAAGGATACCATTGTTTGCTTAATTCGAAATTCAAGATCATTTACTGTTTATCCCCATCATGTTCTAGAGGCTAATATCAATTTGATGTCTGATTTTGGAGTTTCTGATTCTGCCATTGCTAGACTGCTTCTTAGAAGGCCATCTATATTTTGTTCAAATGATTTGATTAAGTCATTGGAGGAAGTTAAGTGTTTAGGGTTTGACCCTTCAACAACCGCTTTTCGGACTGCTTTGATAGCCAAGAAATGTATGAGTAAAATACTTTGGGATAAGAAAGTTGATGTTTTTAAGAAACGGGGTTGGTCTGATGAAGCTGTTATTCGAGTATTTAGGTGTCAGCCTAGTTTGATGTTGACTTCAATTGATAAGATTAATCTGGTGATGAATTTTTGGGTTAATCAAATGGGTTGGGATCCCTTGGAACTTACTAAATATCCACTTATGTTTTCTTATAGTTTACCTAAAAGGATCATTCCAAGAGCCTCAATTTTGCAATATCTTTTGATGAAAGGTTTGCGGAAAAAAAATGCGAGCTTAGGTAGACCATTTGCTTATTCTGAGAATATGTTCTTGAACAAGTGTGTTTTCAGCTTTAAGGAGGAGTCTGATTATCTGTTGAAGCTATATGACGAAAAAATGAAACTTGCAAATACAACGGAGAACAATGGGATGCCATCCACCAAATGTGTAATGTATTGA
Protein sequence

>MsG0280008078.01.T01

MVRGNPKFLELSLKNHEIKFEYFLSKGVSSSDIVSLLTSNPVILQTSFEKRIIPLFELLRMFFKTNKDTIVCLIRHSKWVASYPHHLIVANINLMSDFGVSDNVIARLLQIKPSIFCSRDLIKSLEEVKGLGFHPPITTFGTALMAKKGMSKKLWDEKVDVFKKWGWSDEDVIRAFRYQPNLMLVSIDKINLLMSFWVNQLCWDSLALAKCPNMCGYSLHKRIIPRASVMQFLLMKGLRKKNASLVAPFAYSEKMFLSKFVFRFKEESDYLLKLYEEKLKLVYTKENSGMSSTKWNLVLCLITTKSTTLKFNNHLSFPFSLKCSITTSQTQSESITQPFAVSYLINNFGFSTESALKAFNNKQVRFNTPDNPVSVITFFQNHGFSHSHIRIIIKKAPWLLSSQPHKRLWPKFEYFLSKGVSSSDIVSLLTSNPQILQSSLENRIIPLFELLNRFSKTNKDTIVCLIRNSRSFTVYPHHVLEANINLMSDFGVSDSAIARLLLRRPSIFCSNDLIKSLEEVKCLGFDPSTTAFRTALIAKKCMSKILWDKKVDVFKKRGWSDEAVIRVFRCQPSLMLTSIDKINLVMNFWVNQMGWDPLELTKYPLMFSYSLPKRIIPRASILQYLLMKGLRKKNASLGRPFAYSENMFLNKCVFSFKEESDYLLKLYDEKMKLANTTENNGMPSTKCVMY*